BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020672
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82314|U082_ARATH Probable transcriptional regulatory protein At2g25830
OS=Arabidopsis thaliana GN=At2g25830 PE=2 SV=2
Length = 331
Score = 437 bits (1123), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/336 (70%), Positives = 266/336 (79%), Gaps = 20/336 (5%)
Query: 1 MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
M SH S R IL R SNGVSS+ NS + H LLS + ++ SS+SS P H
Sbjct: 1 MASHCSMRV---ILLRFSNGVSSRSILNS---TNHRLLSLTMTNTLSSLSSISPHTTTSH 54
Query: 61 ------------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVI 106
C Q+R I P+CMGRRSSKIAGRKGAQD+KKAKLY R+GKEV+
Sbjct: 55 FTAASQQSDDQNCFRKLQLRKISISTPLCMGRRSSKIAGRKGAQDSKKAKLYCRIGKEVV 114
Query: 107 SAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGG 166
SAVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGG
Sbjct: 115 SAVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGG 174
Query: 167 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 226
VS+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL
Sbjct: 175 VSMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLI 234
Query: 227 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
IALDAGAEDVIEPP EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSEL
Sbjct: 235 IALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSEL 294
Query: 287 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
LP+TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 295 LPLTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 330
>sp|Q9PJT5|Y742_CHLMU Probable transcriptional regulatory protein TC_0742 OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=TC_0742 PE=3 SV=1
Length = 238
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR KE+ISAVK GGP+P SN L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ + E YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + + D+ LL +D G ED+ D DE+ ++ V+ +
Sbjct: 133 FSRKGACYVPKSSIDEASLLTHVIDCGGEDL-------DSEDEE----FFLVLCEPTDLA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L G+ ++ +P+ ++ D+EA + N LI L +DDVD VY
Sbjct: 182 SVKEALLAKGVTC-SEEKMIYVPLRLVDCDEEAGKSNLALIEWLENIDDVDDVY 234
>sp|Q9Z7Y0|Y573_CHLPN Probable transcriptional regulatory protein
CPn_0573/CP_0176/CPj0573/CpB0595 OS=Chlamydia pneumoniae
GN=CPn_0573 PE=3 SV=1
Length = 238
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 134/236 (56%), Gaps = 12/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR+ KE+ISAVK GG +P SN L V++KAKE ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRIIKELISAVKLGGADPKSNARLRMVIQKAKENNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ Q+ F E YE+YG+GGV I+VE +TD R+ + +R + GG + +PGSV++
Sbjct: 73 ATSAEQKNFEEVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAINKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + + D++ + A++AGAED+ DT++ E + V+
Sbjct: 133 FARKGACTVAKSSIDEEVIFSYAIEAGAEDL--------DTED---EENFLVICAPSELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ KL G D LP+ ++ D++ E N LI L +++DVD VY +
Sbjct: 182 SVKEKLISQGATCSEDRLI-YLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHN 236
>sp|B0B830|Y717_CHLT2 Probable transcriptional regulatory protein CTL0717 OS=Chlamydia
trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
GN=CTL0717 PE=3 SV=1
Length = 238
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR KE+ISAVK GGP+P SN L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ + E YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + D+ LL +D G ED+ D+D+ E ++ V+ +
Sbjct: 133 FSRKGACYVPKHSIDEASLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L G+ ++ +P+ ++ D+E + N LI L +DDVD VY
Sbjct: 182 SVKEALLAKGVTC-SEERLIYVPLRLVDCDEETGKSNLALIEWLENIDDVDDVY 234
>sp|B0BC95|Y713_CHLTB Probable transcriptional regulatory protein CTLon_0713 OS=Chlamydia
trachomatis serovar L2b (strain UCH-1/proctitis)
GN=CTLon_0713 PE=3 SV=1
Length = 238
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR KE+ISAVK GGP+P SN L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ + E YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + D+ LL +D G ED+ D+D+ E ++ V+ +
Sbjct: 133 FSRKGACYVPKHSIDEASLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L G+ ++ +P+ ++ D+E + N LI L +DDVD VY
Sbjct: 182 SVKEALLAKGVTC-SEERLIYVPLRLVDCDEETGKSNLALIEWLENIDDVDDVY 234
>sp|Q3KLP1|Y499_CHLTA Probable transcriptional regulatory protein CTA_0499 OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=CTA_0499 PE=3 SV=1
Length = 238
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR KE+ISAVK GGP+P SN L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ + E YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + D+ LL +D G ED+ D+D+ E ++ V+ +
Sbjct: 133 FSRKGACYVPKHSIDEASLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L G+ ++ +P+ ++ D+E + N LI L +DDVD VY
Sbjct: 182 SVKEALLAKGVTC-SEERLIYVPLRLVDCDEETGKSNLALIEWLENIDDVDDVY 234
>sp|Q253C8|Y838_CHLFF Probable transcriptional regulatory protein CF0838 OS=Chlamydophila
felis (strain Fe/C-56) GN=CF0838 PE=3 SV=1
Length = 238
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 134/234 (57%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D K+ K++SR KE+ISAVK GGP+P +N L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKRGKIFSRTIKELISAVKMGGPDPKTNARLRVIIQKAKDQNIPSENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ F + YE+YGYGGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNFEDVTYELYGYGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + D+ LL ++ GAED+ D D+ E ++ V+ + +
Sbjct: 133 FSRKGACYVPKNSIDEAALLSHVIEVGAEDL--------DNDD---EEHFVVLCDPVDLS 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ +L G+ T+ +P+ ++ D++ E N LI L ++DDVD VY
Sbjct: 182 SVKEQLVALGVTC-TEEKLIYVPLRVVDCDEKDGEANLALIEWLEKIDDVDEVY 234
>sp|O84463|Y457_CHLTR Probable transcriptional regulatory protein CT_457 OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=CT_457 PE=3 SV=1
Length = 238
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 132/236 (55%), Gaps = 12/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR KE+ISAVK GGP+P SN L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ + E YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + D+ LL +D G ED+ D+D+ E ++ V+ +
Sbjct: 133 FSRKGACYVPKHSIDEASLLTHMIDCGGEDL--------DSDD---EEFFLVLCEPTDLA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L G+ ++ +P+ ++ D+E + N LI L ++DVD VY +
Sbjct: 182 SVKEALLAKGVTC-SEERLIYVPLRLVDCDEETGKSNLALIEWLENINDVDDVYHN 236
>sp|Q824H7|Y169_CHLCV Probable transcriptional regulatory protein CCA_00169
OS=Chlamydophila caviae (strain GPIC) GN=CCA_00169 PE=3
SV=1
Length = 238
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 133/234 (56%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D K+ K++SR KE+++AVK GGP+P +N L V++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRVVIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ Q+ F + YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ATSADQKNFEDVTYELYGFGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R I + D+ LL +D GAED+ D+ DE+ + V+
Sbjct: 133 FARKGACYISKSSIDEATLLSHVIDVGAEDL-------DNDDEEN----FIVLCDPVELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ KL G+ ++ +P+ ++ D++ E N LI L ++DDVD VY
Sbjct: 182 SVKEKLVALGVTC-SEEKLIYVPLRLVDCDEKDGEANLALIEWLEQIDDVDEVY 234
>sp|Q5L6U7|Y166_CHLAB Probable transcriptional regulatory protein CAB166 OS=Chlamydophila
abortus (strain S26/3) GN=CAB166 PE=3 SV=1
Length = 238
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 133/236 (56%), Gaps = 12/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D K+ K++SR KE+++AVK GGP+P +N L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ Q+ F YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ATSADQKNFENVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + + D+ LL +D GAED+ D D+D ++ V+
Sbjct: 133 FVRKGACYVPKSSIDEAVLLPHVIDVGAEDL--------DNDDD---EHFLVLCDPVELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ KL G+ ++ +P+ ++ D++ E N LI L ++DDVD VY +
Sbjct: 182 SVKEKLTALGVAC-SEEKLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHN 236
>sp|B3WD20|Y1186_LACCB Probable transcriptional regulatory protein LCABL_11860
OS=Lactobacillus casei (strain BL23) GN=LCABL_11860 PE=3
SV=1
Length = 243
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 135/240 (56%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQD+K+ K++ ++ +E+ A K+GGP+P+ N L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDSKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS++ + E YE YG GGV+I+VE LTD R+ + VR + GG MA G+V
Sbjct: 70 LDKASDRDAANYDEVTYEGYGPGGVAILVEALTDNRNRTSSTVRVAITRHGGNMAAAGAV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ D D+DQ+L+ AL+AGAED+ ++ +++ +
Sbjct: 130 SYMFDRKGYLVISRDDLDVDEDQMLEDALEAGAEDM------------QTSDEAFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L E G F N ++P + ++ +E + +I +L + DDV VYT
Sbjct: 178 PKEFAQVRDALEEKGYKF-VQNELTMVPQNLTPIPEDKVEQFQAMIDQLEDDDDVQEVYT 236
>sp|Q03AF5|Y1022_LACC3 Probable transcriptional regulatory protein LSEI_1022
OS=Lactobacillus casei (strain ATCC 334) GN=LSEI_1022
PE=3 SV=1
Length = 243
Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 135/240 (56%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQD+K+ K++ ++ +E+ A K+GGP+P+ N L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDSKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS++ + E YE YG GGV+I+VE LTD R+ + VR + GG MA G+V
Sbjct: 70 LDKASDRDAANYDEVTYEGYGPGGVAILVEALTDNRNRTSSTVRVAITRHGGNMAAAGAV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ D D+DQ+L+ AL+AGAED+ ++ +++ +
Sbjct: 130 SYMFDRKGYLVISRDDLDVDEDQMLEDALEAGAEDM------------QTSDEAFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L E G F N ++P + ++ +E + +I +L + DDV VYT
Sbjct: 178 PKEFAQVRDALEEKGYKF-VQNELTMVPQNLTPIPEDKVEKFQAMIDQLEDDDDVQEVYT 236
>sp|P62036|Y1074_GEOSL Probable transcriptional regulatory protein GSU1074 OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=GSU1074 PE=3 SV=1
Length = 247
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 140/244 (57%), Gaps = 15/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++++ KE+ A K GG +P N L A ++KAK ++PKD
Sbjct: 6 KWSTIRHKKGAADAKRGKVFTKLIKEITVAAKIGGGDPNGNPRLRAAVDKAKAENMPKDN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ + E ++ E +YE YG GGV+++VE +TD R+V VR C G M
Sbjct: 66 IERAIKKGTGELEGVSYEEIIYEGYGPGGVAVLVECMTDNRNRTVGEVRSTFTKCNGNMG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F + ++ + D D ++L + AL+AGA+DV DE E Y+V
Sbjct: 126 EAGCVSWMFDKKGLIVLS-KDVDFEKLFETALEAGADDV---------ADE---EEQYEV 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ + D+ L +AG PFE+ + ++P T +++D + E +L+ +L + DDV
Sbjct: 173 LTDPAAFIDVREALEKAGFPFESAEIT-MIPQTMVKLDGKNAENMLKLMDRLEDNDDVQN 231
Query: 318 VYTD 321
VY +
Sbjct: 232 VYAN 235
>sp|B2V2S0|Y943_CLOBA Probable transcriptional regulatory protein CLH_0943 OS=Clostridium
botulinum (strain Alaska E43 / Type E3) GN=CLH_0943 PE=3
SV=1
Length = 246
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 134/239 (56%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK GGP+P +N L ++ KAK ++P D + R+
Sbjct: 10 IQAKKGKTDAKRGKIFTKIGKELMVAVKNGGPSPETNNRLRDIIAKAKAANMPNDTITRS 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS E G + +YE YG GV+++VE LTD RS VR GG M G
Sbjct: 70 IKKASGELGSVNYENIIYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTQGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+ + I+ D D+D+++ +ALDAGAED + DED + V +T
Sbjct: 130 VGFMFQEKGEMVIEKADKDEDEMMMLALDAGAEDF--------NADEDEV---FVVTTTP 178
Query: 262 DNYTDITTKLREAGIPF-ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + L GI F E D +++P T +D+ + ++++ L + +DV VY
Sbjct: 179 EDFGTVREALEAEGIEFLEAD--VKMIPDTYTAIDEADAKKFQKMLDLLEDDEDVQEVY 235
>sp|B2TML4|Y1008_CLOBB Probable transcriptional regulatory protein CLL_A1008
OS=Clostridium botulinum (strain Eklund 17B / Type B)
GN=CLL_A1008 PE=3 SV=1
Length = 246
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 134/239 (56%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK GGP+P +N L ++ KAK ++P D + R+
Sbjct: 10 IQAKKGKTDAKRGKIFTKIGKELMVAVKNGGPSPETNNRLRDIIAKAKAANMPNDTITRS 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS E G + +YE YG GV+++VE LTD RS VR GG M G
Sbjct: 70 IKKASGELGSVNYENIIYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTQGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+ + I+ D D+D+++ +ALDAGAED + DED + V +T
Sbjct: 130 VGFMFQEKGEMVIEKADKDEDEMMMLALDAGAEDF--------NADEDEV---FVVTTTP 178
Query: 262 DNYTDITTKLREAGIPF-ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + L GI F E D +++P T +D+ + ++++ L + +DV VY
Sbjct: 179 EDFGTVREALEAEGIEFLEAD--VKMIPDTYTAIDEADAKKFQKMLDLLEDDEDVQEVY 235
>sp|Q838A9|Y663_ENTFA Probable transcriptional regulatory protein EF_0663 OS=Enterococcus
faecalis (strain ATCC 700802 / V583) GN=EF_0663 PE=3
SV=1
Length = 242
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 131/243 (53%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KAK ++P D +
Sbjct: 8 SNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSANMPNDNIA 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G+ E + E YE YG GGV+++V LTD R+ VR GG + +
Sbjct: 68 RAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + IK D ++D +L++ L+AG ED+ P +++
Sbjct: 128 GSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDIETSP------------EVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L +AG + ++P T + ++DE + L+ KL + DDV
Sbjct: 176 YTAPEDFTAVRDALEQAGYSLAQAELT-MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSE 234
Query: 318 VYT 320
V+T
Sbjct: 235 VFT 237
>sp|Q20X07|Y4807_RHOPB Probable transcriptional regulatory protein RPC_4807
OS=Rhodopseudomonas palustris (strain BisB18)
GN=RPC_4807 PE=3 SV=1
Length = 248
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 132/246 (53%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+S++ +E+ A K G P+P N L + + A++ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFSKLAREITVAAKLGTPDPAMNARLRSAIIAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGSDGENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ A D +LD A++AGA+DV+ ++ ++V ++ D
Sbjct: 130 AFMFDRTGIIEFDAKVASADDMLDAAIEAGADDVLS------------SDSGHEVYASQD 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++ ++ L R+A + ++ P T+ VDDE E +LI L E DDV
Sbjct: 178 SFREVAKALEQKFGEARKAALTWK--------PQNTVPVDDETGEKLLKLIDLLQEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>sp|Q3SP09|Y2729_NITWN Probable transcriptional regulatory protein Nwi_2729 OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=Nwi_2729
PE=3 SV=1
Length = 248
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 129/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFSKLAREITVAAKLGTPDPAMNPRLRAAVIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E++ E YE YG GGV++++EVLTD R+ + +R GG + + GSV
Sbjct: 70 IKKASGNDAESYDELRYEGYGPGGVAVIMEVLTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ A D +L+ A++AGA+DV+ +DE E Y ++ D
Sbjct: 130 SFMFDRLGVIEYDADKASVDDMLEAAIEAGADDVV--------SDEGGHEIY----ASQD 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L F L+ P TI VDD E +LI L E DDV VY
Sbjct: 178 TFRDVAKALEST---FGEARKVALIWKPQNTIAVDDNTGEKLLKLIDLLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>sp|B3E787|Y1245_GEOLS Probable transcriptional regulatory protein Glov_1245 OS=Geobacter
lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)
GN=Glov_1245 PE=3 SV=1
Length = 247
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 140/245 (57%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++++ KE+ A K GG +P +N L ++KAK ++PKD
Sbjct: 6 KWSTIKHKKGAADAKRGKIFTKIIKEISVAAKLGGGDPAANPRLRTAIDKAKGENMPKDN 65
Query: 139 VERNIKRASEKGQEAFI--EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ER IK+ + G E + E VYE YG GGV+++VEV+TD R+V+ VR + C G M
Sbjct: 66 IERAIKKGT-GGMEGVVYEEIVYEGYGPGGVAVLVEVMTDNRNRTVSEVRSIFTKCNGNM 124
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ G V + F + V++ T D DQL + AL+AGAEDV+E ED+ E
Sbjct: 125 GEAGCVAWMFDKKGVISYD-TSLDFDQLFEAALEAGAEDVVE----EDEQIE-------- 171
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V + ++ ++ L G F++ + ++P T + ++ + E +++ +L + DDV
Sbjct: 172 VYTEPSSFIEVRDALEAKGFKFQSAEIT-MIPQTQVALEGKQAESMLKMMDRLEDCDDVQ 230
Query: 317 AVYTD 321
VY +
Sbjct: 231 NVYAN 235
>sp|Q1QHP3|Y3525_NITHX Probable transcriptional regulatory protein Nham_3525
OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=Nham_3525 PE=3 SV=1
Length = 248
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 128/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFSKLAREITVAAKLGTPDPAMNARLRAAMIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E++ E YE YG GGV+I++EVLTD R+ + +R GG + + GSV
Sbjct: 70 IKKASGHDAESYDELRYEGYGPGGVAIIMEVLTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R VV A D +L+ A++AGA+DV+ E +++ ++ +
Sbjct: 130 SFMFDRLGVVEYDADKASADDMLEAAVEAGADDVVS------------GEGGHEIYASQE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L F L+ P T+ VDD E +LI L E DDV VY
Sbjct: 178 TFRDVARALEG---KFGEARKVALIWKPQNTVAVDDNTGEKLLKLIDLLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>sp|Q130U9|Y4171_RHOPS Probable transcriptional regulatory protein RPD_4171
OS=Rhodopseudomonas palustris (strain BisB5) GN=RPD_4171
PE=3 SV=1
Length = 248
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+++K +S++ +E+ A K G P+P N L A + A++ ++PKD +ER
Sbjct: 10 IMHRKGKQDAQRSKAFSKLAREITVAAKLGTPDPAMNPRLRAAVIAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGGDSENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ A D +LD A++AGA+DV+ +E ++V ++ +
Sbjct: 130 SFMFDRTGVIEYDAGKASADDMLDAAIEAGADDVLS------------SEGGHEVFASQE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L F + L+ P T+ VDDE E +L+ L E DDV VY
Sbjct: 178 TFRDVAKALE---AKFGEPRKAALIWKPQNTVAVDDETGEKLFKLMEHLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>sp|C4Z5P5|Y902_EUBE2 Probable transcriptional regulatory protein EUBELI_00902
OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48)
GN=EUBELI_00902 PE=3 SV=1
Length = 247
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 137/243 (56%), Gaps = 18/243 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ IA +K A DA K K+++R+GKE++ AVK+GGP+ +N+ L V+ K K ++P D ++
Sbjct: 8 ANIAHKKAANDAAKGKIFTRLGKELMIAVKEGGPDVNNNSKLRQVVAKCKAANMPNDTID 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A+ + YE YG G +I+VE LTD R+ + +R GG + PG
Sbjct: 68 RAIKKAASNDMSNYESVTYEGYGPNGTAIIVEALTDNRNRAASNIRSAFTKGGGNVGTPG 127
Query: 201 SVMFKF--RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
V F F + +V+ + D D+L+ +ALDAGA+D E E Y+++
Sbjct: 128 CVSFMFDNKGQMIVDKEEYTGDADELMMLALDAGADDFNEE------------EDCYEIL 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEV--DDEAMELNKELIAKLLELDDVD 316
++ + + + L +AG+ F + + ++P TT+++ +D+ ++N+ ++ L E DDV
Sbjct: 176 TSPEEFDAVNQALADAGVTFASAEVT-MIPQTTVDLTSEDDIKKMNR-ILGLLDEDDDVQ 233
Query: 317 AVY 319
VY
Sbjct: 234 NVY 236
>sp|Q609L3|Y1220_METCA Probable transcriptional regulatory protein MCA1220
OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB
11132 / Bath) GN=MCA1220 PE=3 SV=1
Length = 248
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 138/242 (57%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ KL++++ +E+ A + GGP+P +N L ++KA ++ KD +E
Sbjct: 8 ANIQHRKGAQDAKRGKLFTKLIREITVASRTGGPDPGNNPRLRTAIDKALVANMSKDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ S E+V YE YG GG++++V+ LTD R+VA VR GG +
Sbjct: 68 RAIKKGSGAADGDNYEEVRYEGYGPGGIAVLVDCLTDNRNRTVAEVRHAFSKAGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + VV+ D +D++++ ALDAGA+DV+ VNED + V++
Sbjct: 128 GSVAYLFSKTGVVSFS-ADLGEDRVMEPALDAGADDVV---VNEDGS--------VDVLT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
D + + L AG+ E+ + + T++++D E E L+ +L +LDDV VY
Sbjct: 176 APDQFEAVRDALEAAGLTPESAEVT-MRASTSVKLDKEDAEKMIRLLERLEDLDDVQNVY 234
Query: 320 TD 321
++
Sbjct: 235 SN 236
>sp|Q39XN9|Y743_GEOMG Probable transcriptional regulatory protein Gmet_0743 OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=Gmet_0743 PE=3 SV=1
Length = 247
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 141/244 (57%), Gaps = 15/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++++ KE+ A K GG +P N L + ++KAK ++PKD
Sbjct: 6 KWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGGDPNGNPRLRSAVDKAKAENMPKDN 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ + + + + E VYE YG GGV+++VE +TD R+V VR C G M
Sbjct: 66 IERAIKKGTGELEGVNYEEIVYEGYGPGGVAVLVECMTDNRNRTVGDVRSTFTKCNGNMG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F + ++ + DAD ++L ++AL+AGAEDV DE E Y+V
Sbjct: 126 ETGCVSWMFDKKGLIVVS-KDADFEKLFEVALEAGAEDV---------ADE---EEQYEV 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ ++ ++ L +AG E+ + ++P T +++D + E +L+ +L + DDV
Sbjct: 173 LTDPSSFMEVREALEKAGFAHESAEIT-MIPQTMVKLDGKNAENMLKLMDRLEDNDDVQN 231
Query: 318 VYTD 321
VY +
Sbjct: 232 VYAN 235
>sp|C5CGU7|Y1935_KOSOT Probable transcriptional regulatory protein Kole_1935 OS=Kosmotoga
olearia (strain TBF 19.5.1) GN=Kole_1935 PE=3 SV=1
Length = 252
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 140/245 (57%), Gaps = 20/245 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK+K+++++ +E++ A ++GG +P +N L A +E+AK ++PKD +E
Sbjct: 8 ANIKHRKMAQDAKKSKIFTKIIRELMVAAREGGTDPNTNNALRAAIERAKAANMPKDTME 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ IK+ A E ++F+E +YEVY GGV++++ LTD R+ +R ++ GG MA+
Sbjct: 68 KAIKKGAGELEGQSFVEALYEVYAPGGVAMLIRALTDNKNRTAQEIRHLLSKHGGNMAES 127
Query: 200 GSVMFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F R V+ + + +D D+ QLL A+DAGAED+ +D+ D R
Sbjct: 128 GSVAWMFERKGVITVPRSEISDMDEFQLL--AIDAGAEDI------QDEEDPVR------ 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ + +++ L E G + +P T+ V E +L+ L + DDV
Sbjct: 174 IITAPEEASNVKNALEENG--YTASYELTYIPKNTVSVSGNDAEKLLKLLNVLEDNDDVQ 231
Query: 317 AVYTD 321
VY +
Sbjct: 232 EVYAN 236
>sp|Q0VRK0|Y750_ALCBS Probable transcriptional regulatory protein ABO_0750 OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=ABO_0750 PE=3 SV=1
Length = 247
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 139/243 (57%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ A K GG P N L A ++KA ++ +D ++
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKLIRELTVAAKMGGGEPNDNPRLRAAIDKALGQNMTRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R +KR + + ++++ YE YG GGV+++VE +TD + R+VA VR GG +
Sbjct: 68 RAVKRGAGGDDDGSMDEITYEGYGKGGVAVLVETMTDNVNRTVAEVRHAFSKFGGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F + + + D+++L+++AL+AGAEDV E+ + + V++
Sbjct: 128 GSVAFLFTKRGEIFFE-PGVDEEKLMEVALEAGAEDV-----------EEMGDDGFLVIT 175
Query: 260 TSD-NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
T D ++ ++ LR AG+ F + + P T E+D + E +++I L +LDDV V
Sbjct: 176 TPDKSFGEVVDSLRAAGLEF-AEAEVTMHPSTEAEMDTDTAETVQKMIDMLEDLDDVQNV 234
Query: 319 YTD 321
YT+
Sbjct: 235 YTN 237
>sp|Q891Z5|Y2215_CLOTE Probable transcriptional regulatory protein CTC_02215
OS=Clostridium tetani (strain Massachusetts / E88)
GN=CTC_02215 PE=3 SV=1
Length = 246
Score = 130 bits (328), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 136/239 (56%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++G+E+I A K+GG NP +N+ L V+ KA+ ++P+D + R
Sbjct: 10 IQAKKGKMDAKRGKIFTKIGRELIIASKEGGSNPDTNSKLRDVIAKARANNMPQDTISRA 69
Query: 143 IKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ A E + E YE YG GV+ VV LTD R+ VR GG + + G
Sbjct: 70 IKKGAGELEGVNYEEMTYEGYGPNGVAFVVSTLTDNKNRTAGNVRAAFSKHGGNLGETGC 129
Query: 202 VMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V + F+ + +++ + D D+D+++ +ALDAGAED + +E +++++T
Sbjct: 130 VGWMFQSKGQMIIERNEDMDEDEIMMVALDAGAEDF------------ESSEEVFEIITT 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ ++ KL G F + + ++P TTIE+ E ++LI KL + DDV VY
Sbjct: 178 PESFGEVREKLEAEGFEFISAEVT-MIPDTTIEISMERAAGLQKLIDKLEDDDDVQNVY 235
>sp|B5EJL6|Y060_ACIF5 Probable transcriptional regulatory protein Lferr_0060
OS=Acidithiobacillus ferrooxidans (strain ATCC 53993)
GN=Lferr_0060 PE=3 SV=1
Length = 250
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 140/243 (57%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +K +DAK+ K+++R+ +E+ A + GG +P SN+ L L+KA ++ KD +E
Sbjct: 8 STIKFKKALKDAKRGKIFTRLIREITVAARAGGGDPASNSRLRLALDKAYGANMTKDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + E+V YE YG GGV+I++E +TD R+VA VR + GG M
Sbjct: 68 RAIKRGTGELEGVDYEEVTYEGYGPGGVAILIETMTDNKVRTVAEVRHIFSKRGGNMGTA 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV ++F++ ++ + DAD+D++L+ AL+AGAEDV VNE ER +
Sbjct: 128 GSVAYQFKKLGLI-VFPADADEDRILEAALEAGAEDV----VNE-------GERIAVYTA 175
Query: 260 TSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
SD ++ + L AG+ P E++ ++P TIEV E E LI L E DDV V
Sbjct: 176 PSDLHS-VVLALEAAGLKPEESE--MTMIPENTIEVSGEEAEKLLRLIDFLEENDDVQNV 232
Query: 319 YTD 321
Y +
Sbjct: 233 YAN 235
>sp|B7J3G0|Y059_ACIF2 Probable transcriptional regulatory protein AFE_0059
OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 /
DSM 14882 / NCIB 8455) GN=AFE_0059 PE=3 SV=1
Length = 250
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 140/243 (57%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +K +DAK+ K+++R+ +E+ A + GG +P SN+ L L+KA ++ KD +E
Sbjct: 8 STIKFKKALKDAKRGKIFTRLIREITVAARAGGGDPASNSRLRLALDKAYGANMTKDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + E+V YE YG GGV+I++E +TD R+VA VR + GG M
Sbjct: 68 RAIKRGTGELEGVDYEEVTYEGYGPGGVAILIETMTDNKVRTVAEVRHIFSKRGGNMGTA 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV ++F++ ++ + DAD+D++L+ AL+AGAEDV VNE ER +
Sbjct: 128 GSVAYQFKKLGLI-VFPADADEDRILEAALEAGAEDV----VNE-------GERIAVYTA 175
Query: 260 TSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
SD ++ + L AG+ P E++ ++P TIEV E E LI L E DDV V
Sbjct: 176 PSDLHS-VVLALEAAGLKPEESE--MTMIPENTIEVSGEEAEKLLRLIDFLEENDDVQNV 232
Query: 319 YTD 321
Y +
Sbjct: 233 YAN 235
>sp|Q89U83|Y1534_BRAJA Probable transcriptional regulatory protein blr1534
OS=Bradyrhizobium japonicum (strain USDA 110) GN=blr1534
PE=3 SV=1
Length = 248
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+ ++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKALGSDGENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DV+ E +++ ++++
Sbjct: 130 SFMFDRTGIIEYDRSVASDDAVLDAAIEAGADDVVS------------GEGGHEIYASTE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
Y D+ L F + L+ P T+ VDDE E +L+ L E DDV VY
Sbjct: 178 GYRDVAKALE---AKFGEPRKAALIWKPQNTVAVDDETGEKLLKLMDLLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>sp|Q1GAZ3|Y677_LACDA Probable transcriptional regulatory protein Ldb0677
OS=Lactobacillus delbrueckii subsp. bulgaricus (strain
ATCC 11842 / DSM 20081) GN=Ldb0677 PE=3 SV=1
Length = 243
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPLGNPRLRLAVDKARAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+I+VE LTD R+ ++VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEVTYEGYAPGGVAILVEALTDNKNRTASSVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L ++AG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQMLMDVMEAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++T + L +AG SEL +P T V + E ++L+ L + DDV V
Sbjct: 178 AKSFTAVRDALEKAGYQLAV---SELTMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>sp|Q04BD3|Y609_LACDB Probable transcriptional regulatory protein LBUL_0609
OS=Lactobacillus delbrueckii subsp. bulgaricus (strain
ATCC BAA-365) GN=LBUL_0609 PE=3 SV=1
Length = 243
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPLGNPRLRLAVDKARAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+I+VE LTD R+ ++VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEVTYEGYAPGGVAILVEALTDNKNRTASSVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L ++AG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQMLMDVMEAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++T + L +AG SEL +P T V + E ++L+ L + DDV V
Sbjct: 178 AKSFTAVRDALEKAGYQLAV---SELTMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>sp|Q5FL22|Y733_LACAC Probable transcriptional regulatory protein LBA0733
OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56
/ N2 / NCFM) GN=LBA0733 PE=3 SV=1
Length = 242
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 126/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPDGNPALRMVIDKARSNNMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV++ VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGGSDEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ ++ L +AG D ++P T V + E + L+ L + DDV VYT
Sbjct: 178 PKQFAEVRDALIKAGYKL-ADAELTMIPQNTTPVPADKKEQFEHLVEALEDSDDVQNVYT 236
>sp|Q042I3|Y1276_LACGA Probable transcriptional regulatory protein LGAS_1276
OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243)
GN=LGAS_1276 PE=3 SV=1
Length = 243
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 129/242 (53%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PK +ER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPTLRMVMDKARAANMPKTNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+++VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ +T +D +++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL--------ETSDDA----FEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+T + L +AG +EL +P T V + E LI L + DDV V
Sbjct: 178 PKQFTAVRDALEKAGYKLAN---AELTMIPQNTTPVPADKKEQFTHLIDALEDNDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>sp|P62037|Y904_LACJO Probable transcriptional regulatory protein LJ_0904
OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 /
NCC 533) GN=LJ_0904 PE=3 SV=1
Length = 243
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 129/242 (53%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PK +ER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPTLRMVMDKARAANMPKTNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+++VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ +T +D +++ +
Sbjct: 130 AYMFDRKGYLVIDRSTTDADEDQVLLDVMDAGGDDL--------ETSDDA----FEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+T + L +AG +EL +P T V + E LI L + DDV V
Sbjct: 178 PKQFTAVRDALEKAGYKLAN---AELTMIPQNTTPVPADKKEQFAHLIDALEDNDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>sp|B8FL13|Y2958_DESAA Probable transcriptional regulatory protein Dalk_2958
OS=Desulfatibacillum alkenivorans (strain AK-01)
GN=Dalk_2958 PE=3 SV=1
Length = 247
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 14/243 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K++S++ KE+ A + GG +P +N L + AK ++PKD
Sbjct: 6 KWSTIKHKKGAADAKRGKVFSKLIKEITIAARMGGGDPDANPRLRTAINAAKAENMPKDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
ER IK+ + + + E+ YE YG GG +++VE LTD R+ A +R + CGG +
Sbjct: 66 WERAIKKGTGELEGVNYEEFQYEGYGPGGGAVLVESLTDNKNRAAAEIRHIFSKCGGSLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F + + + + D+D L++IAL+AGAEDV E A ++V
Sbjct: 126 EAGCVAWMFDKKGYIVVNQSVTDEDTLMEIALEAGAEDVRE------------AGDVFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ D+Y + + AGI E D LP T+EV + E L+ L + DDV
Sbjct: 174 ITQPDDYDAVKEAIDAAGIETE-DASVTKLPQNTVEVTGKEAEQMVRLLQTLDDCDDVQN 232
Query: 318 VYT 320
VYT
Sbjct: 233 VYT 235
>sp|A5IJV5|Y454_THEP1 Probable transcriptional regulatory protein Tpet_0454 OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=Tpet_0454 PE=3 SV=1
Length = 253
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 141/245 (57%), Gaps = 20/245 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK+K+++++ +E+I A ++GG N +N L A +EKA+ ++PK+ +E
Sbjct: 8 ANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVEKARAENMPKENIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + + E +YE Y GGV++ + LTD R+ +R + GG +A+
Sbjct: 68 RAIKRGTGELEGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFNKYGGSLAES 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDV--IEPPVNEDDTDEDRAERYYK 256
GSV + F R V+ I D ++L+ IA+DAGAED+ E P+ +
Sbjct: 128 GSVSWIFERKGVIEIPRDKVKDLEELMMIAIDAGAEDIKDTEDPI--------------Q 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++T +N +++ +KL EAG +E + +P T++V + E E + L ++DDV
Sbjct: 174 IITTPENLSEVKSKLEEAG--YEVEAKVTFIPKNTMKVTGKDAEKVLEFLNALEDMDDVQ 231
Query: 317 AVYTD 321
VY++
Sbjct: 232 EVYSN 236
>sp|Q8RIE0|Y1661_FUSNN Probable transcriptional regulatory protein FN1661 OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=FN1661 PE=3 SV=1
Length = 249
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 136/247 (55%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGGDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFTRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ V+ +K D D+ + AL+AGAEDV EDD Y++V
Sbjct: 126 ADGAVSWMFKKKGVITVKAEGIDADEFMMAALEAGAEDVT-----EDDG-------YFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>sp|Q04FS7|Y768_OENOB Probable transcriptional regulatory protein OEOE_0768 OS=Oenococcus
oeni (strain ATCC BAA-331 / PSU-1) GN=OEOE_0768 PE=3
SV=1
Length = 240
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 134/241 (55%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P++N L V++KAK ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISHDLYVAAKAGGADPSANASLRLVMDKAKAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +A+ G F E YE Y GG++++VE TD I R+V+ VR GG + GSV
Sbjct: 70 LDKATGAGDVKFEEATYEGYAPGGIAVLVETSTDNINRTVSNVRNSFNHHGGSLGTSGSV 129
Query: 203 MFKF-RRARVVNIKFTDAD--KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F RR V + + D +DQ+++ A++AGAEDV DD +++ S
Sbjct: 130 SFQFDRRGHFVIDRQSHPDITEDQVMEDAIEAGAEDV----QTSDDA--------FEIFS 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L + G ++ ++P +EV + E ++LI +L + DDV AVY
Sbjct: 178 QPADFAAVEGALTDKGYDL-AESEITMIPQNPVEVPEADQEKFEKLIDELEDNDDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>sp|A9BHC2|Y807_PETMO Probable transcriptional regulatory protein Pmob_0807 OS=Petrotoga
mobilis (strain DSM 10674 / SJ95) GN=Pmob_0807 PE=3 SV=1
Length = 251
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 143/243 (58%), Gaps = 16/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQDAK++++++++ +E+ A ++GG +P SN L +E AK ++PKD
Sbjct: 6 KWANIKHRKGAQDAKRSQMFTKLIRELTIAAREGGGDPESNPRLRTAVENAKAANMPKDK 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+E IK+ + + + + ++ YE YG GGV++++ V+TD R+ VR V+ GG +A
Sbjct: 66 IESAIKKGTGELEGEELTEIMYEAYGPGGVALLISVVTDNKNRTAQEVRHVLSKWGGALA 125
Query: 198 DPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ GSV + F R ++ I + D D+L+ +A++AGAED+ +++TD +
Sbjct: 126 ESGSVSWNFERKGLITIPKEEVEDIDELMLLAVEAGAEDL------DENTDP------LE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ +N T + L+EAG + LP TT+++ DE E +L+ L ++DDV
Sbjct: 174 IITAPENLTQVRNALKEAG--YTVSEKLTFLPKTTVKLSDEDAEKLLKLLNALDDMDDVQ 231
Query: 317 AVY 319
V+
Sbjct: 232 EVF 234
>sp|B7IHX7|Y1246_THEAB Probable transcriptional regulatory protein THA_1246 OS=Thermosipho
africanus (strain TCF52B) GN=THA_1246 PE=3 SV=1
Length = 252
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 141/245 (57%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK AQDAKK+K+++++ +E+I A K+GG +P +N L AVLE+A+ ++PKD
Sbjct: 6 KWANIKHRKAAQDAKKSKIFTKLIREIIVAAKEGGGDPETNPRLRAVLERARAANMPKDT 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+E++IK+ + + + + E +YE Y GV++ + +TD R+ +R ++ GG +A
Sbjct: 66 IEKSIKKGTGELEGVDYQEIIYEAYAPAGVALYIYAMTDNKNRTAQELRHLLSKHGGSLA 125
Query: 198 DPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ GSV + F R ++ I K AD ++ +A+DAGAED+I EDD +
Sbjct: 126 ESGSVAWLFERKGIIEIPKEKIADFEEFAMVAIDAGAEDII-----EDDP--------IQ 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V++ D T++ KL E G FE + +P T++V E +L++ L + DDV
Sbjct: 173 VITAPDMLTEVKDKLAENG--FEGEAKVTFIPKNTVKVTGADAEKVLKLVSVLEDNDDVQ 230
Query: 317 AVYTD 321
VY +
Sbjct: 231 EVYAN 235
>sp|A8YUH0|Y777_LACH4 Probable transcriptional regulatory protein lhv_0777
OS=Lactobacillus helveticus (strain DPC 4571)
GN=lhv_0777 PE=3 SV=1
Length = 242
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 126/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV++ VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGGSEEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ DD +++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL----QTSDDA--------FEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L + G D ++P T V + E + L+ L + DDV VYT
Sbjct: 178 PKQFADVRDALIKDGYKL-ADAELTMIPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYT 236
>sp|A0LUK8|Y1346_ACIC1 Probable transcriptional regulatory protein Acel_1346
OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
GN=Acel_1346 PE=3 SV=1
Length = 248
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DA++ KL++++ K + A + GGP+P N LA + KA++ VP D +ER I+R
Sbjct: 13 KKAVIDARRGKLFAKLIKNIEVAARVGGPDPNGNPTLADAIAKARDQSVPNDNIERAIRR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GGV++++E LTD R+ + VR + GG MADPGSV
Sbjct: 73 GAGLEAGGTDWEPIIYEGYGPGGVALLIECLTDNRNRAASEVRTTMTRNGGSMADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R +V + +D +L LDAGAE+V +D E ++VVS +
Sbjct: 133 YLFNRKGIVIVPKEGRSEDDVLAAVLDAGAEEV-------NDLGES-----FEVVSEPGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
T + L AGI +E+ + + P + +DD+ LI L + DDV AV+ +
Sbjct: 181 LTRVRDALSAAGIRYESADVA-WQPTVNVPLDDDTARKVLRLIEALEDCDDVQAVWAN 237
>sp|Q67QQ4|Y1004_SYMTH Probable transcriptional regulatory protein STH1004
OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=STH1004 PE=3 SV=1
Length = 242
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 16/249 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ I K D ++ +SR+ K+++ A ++GGP+P +N +L + A++ ++P
Sbjct: 1 MGRKWENIKRSKAKLDQQRGATFSRITKDIMKAAREGGPDPETNFLLKVAVAAARKANMP 60
Query: 136 KDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
+ ++R I R A E F E VYE YG GGV+I++ ++TD R+ A VR + GG
Sbjct: 61 NENIQRAIARGAGLDSAERFDEIVYEGYGPGGVAIMMNIVTDNRNRTAADVRHIFSKHGG 120
Query: 195 KMADPGSVMFKFRRARVVNIKF--TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE 252
+ + G V + F++ V+ I T +D L+ IALDAGAED++ T+ED
Sbjct: 121 SLGETGCVSWMFKKRGVIEIDRGETPIGEDDLMMIALDAGAEDLV--------TEEDS-- 170
Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
Y + + D + +L AG+P E + ++P TT+ V E E L+ L E
Sbjct: 171 --YAIYTAPDALNQVMKQLEAAGVPVEKGEVA-MVPTTTVAVSGEEAEQLMRLLDLLEEH 227
Query: 313 DDVDAVYTD 321
DDV VYT+
Sbjct: 228 DDVQNVYTN 236
>sp|A8F5Z3|Y1011_THELT Probable transcriptional regulatory protein Tlet_1011 OS=Thermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
GN=Tlet_1011 PE=3 SV=1
Length = 253
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 145/244 (59%), Gaps = 18/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK++L++++ +E+I A ++GG +P +N+ L +EKAKE ++P++ +E
Sbjct: 8 ANIKHRKMAQDAKKSQLFTKLIRELIVAAREGGGDPETNSRLRTAIEKAKEANMPRENIE 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
+ IKR + +G E + E +YE YG GGV++ + LTD R+ +R V+ GG +AD
Sbjct: 68 KAIKRGTGELEGVE-YQEIIYEAYGPGGVALYIRALTDNKNRTAQELRHVLSRHGGSLAD 126
Query: 199 PGSVMFKFRRARVVNIKFTD-ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F R ++++ A+ ++L+ +A+DAGAED+ DD D+ ++
Sbjct: 127 LGAVGWIFERKGIISVPRDQVANVEELVMMAIDAGAEDI-------DDQDDP-----VRI 174
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ DN + +L + G ++ + G +P T++V + E L+ L ++DDV
Sbjct: 175 TTSPDNLMSVKEELEKNG--YKAEAGISYVPKNTVQVTGKDAEKILALLNALEDMDDVQD 232
Query: 318 VYTD 321
VY++
Sbjct: 233 VYSN 236
>sp|Q2RZ66|Y2667_SALRD Probable transcriptional regulatory protein SRU_2667
OS=Salinibacter ruber (strain DSM 13855 / M31)
GN=SRU_2667 PE=3 SV=2
Length = 257
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 136/244 (55%), Gaps = 14/244 (5%)
Query: 78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
R+ +K+ +K D +K+K+++R+ +E+ A ++GG +P +N L+ LE+A+E D+ KD
Sbjct: 6 RKWAKVKRKKQKDDRRKSKVWARLSQEIEKAAREGGGDPDANVALSQALERAREEDMAKD 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ER IKR + + +E EKV YE Y GV++ VE T+ I R+V +R + D GG +
Sbjct: 66 TIERAIKRGTGELEEEGREKVTYEGYAPHGVAVFVEGETENINRTVKDLRNLFSDHGGNL 125
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F + I D+ L ++A++AGAE+V D+TD Y
Sbjct: 126 GKDGSVAYLFEQKGRFEIAADATDEMTLFEVAVEAGAEEV-------DETD-----GTYV 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V + D + D+ L EAG+P E N P TT+ + + + + LI K+ +L DV
Sbjct: 174 VTTGRDAFADVGEALDEAGLPVEA-NALVRAPTTTVALAPDERDAVRGLIEKINDLRDVT 232
Query: 317 AVYT 320
+VYT
Sbjct: 233 SVYT 236
>sp|Q9WYT7|Y466_THEMA Probable transcriptional regulatory protein TM_0466 OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=TM_0466 PE=3 SV=2
Length = 253
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 140/243 (57%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK+K+++++ +E+I A ++GG N +N L A +E+A+ ++PK+ +E
Sbjct: 8 ANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVERARAENMPKENIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + + E +YE Y GGV++ + LTD R+ +R + GG +A+
Sbjct: 68 RAIKRGTGELEGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFNKYGGSLAES 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F R V+ I D ++L+ IA+DAGAED+ + AE +++
Sbjct: 128 GSVSWIFERKGVIEISRDKVKDLEELMMIAIDAGAEDIKD------------AEDPIQII 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +N +++ +KL EAG +E + +P T++V + E E + L ++DDV V
Sbjct: 176 TAPENLSEVKSKLEEAG--YEVEAKVTFIPKNTVKVTGKDAEKVLEFLNALEDMDDVQEV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>sp|Q2IS49|Y4273_RHOP2 Probable transcriptional regulatory protein RPB_4273
OS=Rhodopseudomonas palustris (strain HaA2) GN=RPB_4273
PE=3 SV=1
Length = 248
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 126/241 (52%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+++K +S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGKQDAQRSKAFSKLAREITVAAKLGTPDPAMNPRLRAAVIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGGDSENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ A D +L+ A++AGA+DV +E ++V ++ D
Sbjct: 130 SFMFDRTGVIEYDADKASADDMLEAAIEAGADDVAS------------SESGHEVYASQD 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L F + L+ P T+ VDDE E +L+ L + DDV VY
Sbjct: 178 TFRDVAKALE---AKFGEARKAALIWKPQNTVAVDDETGEKLFKLMDHLNDHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>sp|B1L927|Y469_THESQ Probable transcriptional regulatory protein TRQ2_0469 OS=Thermotoga
sp. (strain RQ2) GN=TRQ2_0469 PE=3 SV=1
Length = 253
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 140/245 (57%), Gaps = 20/245 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK+K+++++ +E+I A ++GG N +N L A +E+A+ ++PK+ +E
Sbjct: 8 ANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVERARAENMPKENIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + + E +YE Y GGV++ + LTD R+ +R + GG +A+
Sbjct: 68 RAIKRGTGELEGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFNKYGGSLAES 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDV--IEPPVNEDDTDEDRAERYYK 256
GSV + F R V+ I D ++L+ IA+DAGAED+ E P+ +
Sbjct: 128 GSVSWIFERKGVIEISRDKVKDLEELMMIAIDAGAEDIKDTEDPI--------------Q 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ +N +++ +KL EAG +E + +P T++V + E E + L ++DDV
Sbjct: 174 IITAPENLSEVKSKLEEAG--YEVEAKVTFIPKNTVKVTGKDAEKVLEFLNALEDMDDVQ 231
Query: 317 AVYTD 321
VY++
Sbjct: 232 EVYSN 236
>sp|Q07H94|Y4771_RHOP5 Probable transcriptional regulatory protein RPE_4771
OS=Rhodopseudomonas palustris (strain BisA53)
GN=RPE_4771 PE=3 SV=1
Length = 248
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+S++ +E+ A K G P+P N L + + A++ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFSKLAREITVAAKLGAPDPAMNARLRSAIIAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A + + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGSDGDNYDEMRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F ++ A D +LD A++AGA+DV+ ++V ++ D
Sbjct: 130 AFMFDHTGLIEYDAGVASADDVLDAAIEAGADDVLSSDTG------------HEVYASHD 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ ++ L F + L+ P T+ VDDE E +LI L E DDV VY
Sbjct: 178 TFREVAKALE---AKFGEARKAALIWKPQNTVPVDDETGEKLLKLIDLLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,772,034
Number of Sequences: 539616
Number of extensions: 4789945
Number of successful extensions: 16854
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 14760
Number of HSP's gapped (non-prelim): 814
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)