Query 020672
Match_columns 323
No_of_seqs 145 out of 1122
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 06:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3q_A Transcriptional regulat 100.0 2E-89 6.7E-94 636.6 26.8 234 75-321 4-239 (247)
2 1lfp_A Hypothetical protein AQ 100.0 1.4E-89 4.9E-94 637.8 22.8 234 75-321 1-237 (249)
3 1kon_A Protein YEBC, YEBC; alp 100.0 2.1E-89 7.2E-94 636.6 20.5 236 73-322 2-239 (249)
4 1mw7_A Hypothetical protein HP 100.0 6.8E-89 2.3E-93 630.6 21.7 233 76-322 1-239 (240)
5 2jsx_A Protein NAPD; TAT, proo 81.5 1 3.4E-05 35.5 3.2 64 253-318 8-72 (95)
6 2ko1_A CTR148A, GTP pyrophosph 72.3 4.9 0.00017 29.2 4.5 61 259-320 14-77 (88)
7 3ncq_A Nitrogen regulatory pro 63.7 10 0.00035 30.8 5.1 53 254-306 3-77 (119)
8 3t9z_A GLNK3, nitrogen regulat 62.5 12 0.00041 30.3 5.3 53 254-306 3-77 (118)
9 4aff_A Nitrogen regulatory pro 62.3 11 0.00039 30.3 5.1 50 254-303 3-74 (116)
10 3mhy_A PII-like protein PZ; PI 55.6 13 0.00043 29.6 4.3 24 254-277 3-26 (112)
11 2lqj_A Mg2+ transport protein; 55.0 11 0.00038 29.4 3.7 67 254-321 10-86 (94)
12 2f1f_A Acetolactate synthase i 52.5 18 0.00062 30.9 5.0 59 258-320 11-76 (164)
13 3l7p_A Putative nitrogen regul 51.1 17 0.0006 29.1 4.4 49 254-302 5-76 (115)
14 2pc6_A Probable acetolactate s 44.4 25 0.00084 30.2 4.6 58 259-320 13-77 (165)
15 3lh2_S 4E10_1VI7A_S0_002_N (T8 38.1 18 0.00062 26.3 2.4 44 254-300 9-54 (76)
16 2f1f_A Acetolactate synthase i 34.9 1.6E+02 0.0056 24.8 8.3 134 170-313 5-143 (164)
17 2f06_A Conserved hypothetical 34.0 1.7E+02 0.0059 23.0 9.9 94 171-280 9-102 (144)
18 3m05_A Uncharacterized protein 33.5 41 0.0014 27.3 4.0 51 253-303 7-62 (114)
19 1i1g_A Transcriptional regulat 33.3 47 0.0016 26.1 4.4 67 254-321 67-134 (141)
20 3fyb_A Protein of unknown func 32.8 19 0.00066 28.8 1.9 21 298-318 14-34 (104)
21 2fgc_A Acetolactate synthase, 31.7 40 0.0014 29.8 3.9 132 169-312 30-169 (193)
22 2cvi_A 75AA long hypothetical 31.6 56 0.0019 23.6 4.3 64 254-321 5-72 (83)
23 1hwu_A PII protein; herbaspiri 30.6 45 0.0016 26.0 3.8 24 254-277 3-26 (112)
24 1sfu_A 34L protein; protein/Z- 30.5 33 0.0011 26.0 2.7 28 123-150 30-57 (75)
25 3bzq_A Nitrogen regulatory pro 30.0 47 0.0016 26.0 3.8 25 253-277 4-28 (114)
26 2ns1_B Nitrogen regulatory pro 29.7 48 0.0016 26.2 3.8 25 253-277 6-30 (116)
27 2eg2_A Nitrogen regulatory pro 29.1 50 0.0017 25.8 3.8 24 254-277 3-26 (112)
28 1p65_A Nucleocapsid protein; v 28.2 50 0.0017 24.4 3.3 26 180-205 24-51 (73)
29 2gw8_A PII signal transduction 27.9 54 0.0018 25.7 3.8 25 253-277 4-28 (114)
30 1owx_A Lupus LA protein, SS-B, 27.7 42 0.0014 27.2 3.2 46 164-215 16-63 (121)
31 2o35_A Hypothetical protein DU 27.4 24 0.00082 28.3 1.5 21 298-318 15-35 (105)
32 2j9c_A GLNK1, hypothetical nit 27.0 55 0.0019 26.0 3.7 24 254-277 5-28 (119)
33 1u8s_A Glycine cleavage system 26.6 1.2E+02 0.0042 25.3 6.1 110 169-281 7-124 (192)
34 3lk7_A UDP-N-acetylmuramoylala 26.5 64 0.0022 31.0 4.8 58 123-186 284-342 (451)
35 3dfe_A Putative PII-like signa 26.4 42 0.0014 26.8 2.9 50 253-302 7-76 (111)
36 1vk8_A Hypothetical protein TM 26.2 1.2E+02 0.0043 24.0 5.6 49 265-321 36-86 (106)
37 1vfj_A Nitrogen regulatory pro 25.8 62 0.0021 25.4 3.8 24 254-277 3-26 (116)
38 2pc6_A Probable acetolactate s 24.8 2E+02 0.0067 24.4 7.0 133 170-312 6-143 (165)
39 4h1h_A LMO1638 protein; MCCF-l 23.9 1.3E+02 0.0043 28.0 6.2 63 254-320 14-84 (327)
40 1gg4_A UDP-N-acetylmuramoylala 23.6 87 0.003 30.1 5.1 61 122-188 286-347 (452)
41 2x5o_A UDP-N-acetylmuramoylala 23.1 74 0.0025 30.4 4.5 59 122-186 272-331 (439)
42 2zbc_A 83AA long hypothetical 22.8 88 0.003 22.1 3.9 64 254-321 5-72 (83)
43 2iii_A S-adenosylmethionine de 22.7 90 0.0031 25.8 4.3 38 137-174 25-62 (135)
44 3c7m_A Thiol:disulfide interch 22.7 1.9E+02 0.0066 23.2 6.5 47 98-144 93-140 (195)
45 2z30_B TK-subtilisin; thermoco 22.6 26 0.00088 25.0 0.8 47 267-322 14-60 (65)
46 2nzc_A Hypothetical protein; s 22.5 1.1E+02 0.0036 23.6 4.4 59 170-233 9-71 (86)
47 2ovm_B NCOR, progesterone rece 22.3 44 0.0015 20.2 1.6 18 114-131 5-22 (26)
48 2e1c_A Putative HTH-type trans 22.2 90 0.0031 26.0 4.3 66 254-321 90-156 (171)
49 1qbj_A Protein (double-strande 22.1 64 0.0022 24.1 3.0 41 103-149 13-54 (81)
50 2o66_A PII protein; regulation 21.5 79 0.0027 26.0 3.7 25 253-277 14-38 (135)
51 3hn7_A UDP-N-acetylmuramate-L- 21.4 1.4E+02 0.0048 29.4 6.2 59 123-188 348-407 (524)
52 1e8c_A UDP-N-acetylmuramoylala 21.3 1.6E+02 0.0056 28.5 6.6 60 122-188 311-371 (498)
53 3neu_A LIN1836 protein; struct 20.9 1E+02 0.0035 24.3 4.2 51 97-149 14-64 (125)
54 2epi_A UPF0045 protein MJ1052; 20.1 1.2E+02 0.0041 23.6 4.4 49 265-321 27-77 (100)
No 1
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=100.00 E-value=2e-89 Score=636.56 Aligned_cols=234 Identities=31% Similarity=0.547 Sum_probs=217.8
Q ss_pred cCcc-hhhHHhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHhccC-Ccc
Q 020672 75 CMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQE 152 (323)
Q Consensus 75 ~mG~-kWsnIKh~Kaa~DakKsklfsKl~keI~~Avk~GG~DP~~N~~La~aI~kAK~~nmPKd~IErAIkra~g~-~~~ 152 (323)
++|| ||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.||+||.+|++||+.|||||+||||||||+|. ++.
T Consensus 4 maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~ 83 (247)
T 4f3q_A 4 MAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSGAGD 83 (247)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC-----C
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCcC
Confidence 4565 99999999999999999999999999999999999999999999999999999999999999999999986 567
Q ss_pred ceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCccccCCcceeeeceeeEEEEEeCCCCCHHHHHHHHHHCC
Q 020672 153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG 232 (323)
Q Consensus 153 ~~~e~~YEg~GPgGvaiIVE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f~F~~kGvI~v~~~~~d~D~lle~AIEaG 232 (323)
+|+|++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.+... .++|++||.|||+|
T Consensus 84 ~yeei~YEgyGPgGvaviVe~lTDN~nRT~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~~~d~~~e~aieaG 162 (247)
T 4f3q_A 84 NLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPN-SDEEKIMEIALEVG 162 (247)
T ss_dssp CCEEEEEEEECGGGCEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEECTT-CCHHHHHHHHHHHT
T ss_pred CceEEEEEEEcCCCeEEEEEEeCCCHhHHHHHHHHHHHhcCceECCCCceeEEEeeeEEEEECCC-CCHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999999999999999999999999764 79999999999999
Q ss_pred CcccccCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHhCCCCeeecccceeecCCccccCHHHHHHHHHHHHHHccC
Q 020672 233 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312 (323)
Q Consensus 233 AEDV~~~~~~ed~~~ed~~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~~~Vel~~e~~~~~~~lid~Lee~ 312 (323)
||||++. | ++.|+|+|+|++|.+|+++|+++||++++ ++++|+|+++|+|++|+++++++|+|+|+|+
T Consensus 163 AeDv~~~----e-------dg~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~e~~~~~~klid~Led~ 230 (247)
T 4f3q_A 163 AEDVTTN----D-------DGSIDVTTLPEDFEKIRNAMKAADLNPSH-AEVTVLASTEVGLDKDSAEQMLRLTEMLEDL 230 (247)
T ss_dssp CSEEEEC----T-------TSCEEEEECGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCEECCHHHHHHHHHHHHHHHTS
T ss_pred Cceeeec----C-------CceEEEEECHHHHHHHHHHHHHcCCCeeE-EEEEEecCCccccCHHHHHHHHHHHHHhhcC
Confidence 9999762 1 13699999999999999999999999986 5999999999999999999999999999999
Q ss_pred CCcceeecc
Q 020672 313 DDVDAVYTD 321 (323)
Q Consensus 313 dDV~~VY~N 321 (323)
||||+||||
T Consensus 231 dDVq~Vy~N 239 (247)
T 4f3q_A 231 DDVQNVYSN 239 (247)
T ss_dssp TTEEEEEEC
T ss_pred cCcceeeEC
Confidence 999999999
No 2
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=100.00 E-value=1.4e-89 Score=637.79 Aligned_cols=234 Identities=32% Similarity=0.551 Sum_probs=220.7
Q ss_pred cCcc-hhhHHhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHhccC-Ccc
Q 020672 75 CMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQE 152 (323)
Q Consensus 75 ~mG~-kWsnIKh~Kaa~DakKsklfsKl~keI~~Avk~GG~DP~~N~~La~aI~kAK~~nmPKd~IErAIkra~g~-~~~ 152 (323)
+||| ||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.||+||.+|++||+.|||||+||||||||+|. ++.
T Consensus 1 MaGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~~ 80 (249)
T 1lfp_A 1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGE 80 (249)
T ss_dssp ----CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSSC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCccc
Confidence 4675 99999999999999999999999999999999999999999999999999999999999999999999986 556
Q ss_pred ceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCccccCCcceeeeceeeEEEEEeCCCCCHHHHHHHHHHCC
Q 020672 153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG 232 (323)
Q Consensus 153 ~~~e~~YEg~GPgGvaiIVE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f~F~~kGvI~v~~~~~d~D~lle~AIEaG 232 (323)
+|+|++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.+..+..++|++||+|||+|
T Consensus 81 ~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~mF~~kG~i~~~~~~~~ed~~le~aleaG 160 (249)
T 1lfp_A 81 QFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVG 160 (249)
T ss_dssp CCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHHHHHHHHHT
T ss_pred ceEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEEcCCCCCHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999865579999999999999
Q ss_pred CcccccCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHhCCCCeeecccceeecCCcccc-CHHHHHHHHHHHHHHcc
Q 020672 233 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLE 311 (323)
Q Consensus 233 AEDV~~~~~~ed~~~ed~~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~~~Vel-~~e~~~~~~~lid~Lee 311 (323)
||||++. ++.|+|+|+|++|.+|+++|+++||++.+ ++++|+|+++|+| ++|+++++++|+|+|++
T Consensus 161 AeDv~~e------------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~~e~~~~~~klid~Led 227 (249)
T 1lfp_A 161 AEDVQPG------------EEVHIIYTVPEELYEVKENLEKLGVPIEK-AQITWKPISTVQINDEETAQKVIKLLNALEE 227 (249)
T ss_dssp CSEEECC------------SSEEEEEECGGGHHHHHHHHHTTTCCCSE-EEEEEEESSCEECCCHHHHHHHHHHHHHHHT
T ss_pred CceeecC------------CceEEEEECHHHHHHHHHHHHHcCCCeee-eeeEECCCCceecCCHHHHHHHHHHHHHHhc
Confidence 9999641 14799999999999999999999999987 5999999999999 89999999999999999
Q ss_pred CCCcceeecc
Q 020672 312 LDDVDAVYTD 321 (323)
Q Consensus 312 ~dDV~~VY~N 321 (323)
+||||+||||
T Consensus 228 ~DDVq~Vy~N 237 (249)
T 1lfp_A 228 LDDVQQVIAN 237 (249)
T ss_dssp STTEEEEEEC
T ss_pred ccChhhhhcC
Confidence 9999999999
No 3
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=100.00 E-value=2.1e-89 Score=636.64 Aligned_cols=236 Identities=31% Similarity=0.537 Sum_probs=212.3
Q ss_pred cccCcc-hhhHHhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHhccC-C
Q 020672 73 PVCMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-G 150 (323)
Q Consensus 73 ~~~mG~-kWsnIKh~Kaa~DakKsklfsKl~keI~~Avk~GG~DP~~N~~La~aI~kAK~~nmPKd~IErAIkra~g~-~ 150 (323)
.++||| ||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.||+||.+|++||+.|||||+||||||||+|. +
T Consensus 2 ~~MaGHsKWanIkh~K~~~Dakr~kiftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~ 81 (249)
T 1kon_A 2 SHMAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDD 81 (249)
T ss_dssp ----CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC-----
T ss_pred CccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCc
Confidence 356786 99999999999999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred ccceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCccccCCcceeeeceeeEEEEEeCCCCCHHHHHHHHHH
Q 020672 151 QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 230 (323)
Q Consensus 151 ~~~~~e~~YEg~GPgGvaiIVE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f~F~~kGvI~v~~~~~d~D~lle~AIE 230 (323)
+.+|+|++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.+.. + ++|++||+|||
T Consensus 82 ~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~~F~~kG~i~~~~-~-~ed~~le~ale 159 (249)
T 1kon_A 82 DANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEK-G-DEDTIMEAALE 159 (249)
T ss_dssp -CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESS-S-CHHHHHHHHHH
T ss_pred ccCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEECC-C-CHHHHHHHHHh
Confidence 568999999999999999999999999999999999999999999999999999999999999985 2 89999999999
Q ss_pred CCCcccccCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHhCCCCeeecccceeecCCccccCHHHHHHHHHHHHHHc
Q 020672 231 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLL 310 (323)
Q Consensus 231 aGAEDV~~~~~~ed~~~ed~~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~~~Vel~~e~~~~~~~lid~Le 310 (323)
+|||||+.. + ++.|+|+|+|++|.+|+++|+++||++.+ ++++|+|+++|+|++|+++++++|+|+|+
T Consensus 160 aGAeDv~~~---e--------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~e~~~~~~klid~Le 227 (249)
T 1kon_A 160 AGAEDVVTY---D--------DGAIDVYTAWEEMGKVRDALEAAGLKADS-AEVSMIPSTKADMDAETAPKLMRLIDMLE 227 (249)
T ss_dssp HTCSEEEEC---T--------TSCEEEEEEGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCCCCCTTTSHHHHHHHHHHH
T ss_pred CCCceeeec---C--------CceEEEEECHHHHHHHHHHHHHcCCCeee-eeeEECCCCceecCHHHHHHHHHHHHHHh
Confidence 999999741 1 14699999999999999999999999987 59999999999999999999999999999
Q ss_pred cCCCcceeeccC
Q 020672 311 ELDDVDAVYTDQ 322 (323)
Q Consensus 311 e~dDV~~VY~N~ 322 (323)
++||||+||||.
T Consensus 228 d~DDVq~Vy~N~ 239 (249)
T 1kon_A 228 DCDDVQEVYHNG 239 (249)
T ss_dssp HSSSEEEEEECC
T ss_pred cccChhhhhcCC
Confidence 999999999993
No 4
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=100.00 E-value=6.8e-89 Score=630.63 Aligned_cols=233 Identities=28% Similarity=0.404 Sum_probs=203.3
Q ss_pred CcchhhHHhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHhccCCcccee
Q 020672 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI 155 (323)
Q Consensus 76 mG~kWsnIKh~Kaa~DakKsklfsKl~keI~~Avk~GG~DP~~N~~La~aI~kAK~~nmPKd~IErAIkra~g~~~~~~~ 155 (323)
||+||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.||+||.+|++||+.|||||+||||||||+|. +.+|+
T Consensus 1 aGsKWanIkh~K~~~Dakr~k~ftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~g~-~~~~e 79 (240)
T 1mw7_A 1 MGRAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSK-EGNLS 79 (240)
T ss_dssp --------------------CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTST-TCCCE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC-CCCeE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999988 77899
Q ss_pred EEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcC-ccccCCcceeeeceeeEEEEEeC----C-CCCHHHHHHHHH
Q 020672 156 EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG-GKMADPGSVMFKFRRARVVNIKF----T-DADKDQLLDIAL 229 (323)
Q Consensus 156 e~~YEg~GPgGvaiIVE~lTDN~nRT~~~vR~~f~K~G-G~l~~~gsV~f~F~~kGvI~v~~----~-~~d~D~lle~AI 229 (323)
|++|||||||||+|||||||||+|||+++||++|+|+| |+||++|||+|||+|+|+|.+.. . +.++|++||+||
T Consensus 80 ei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~g~G~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~ed~~le~al 159 (240)
T 1mw7_A 80 EITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALI 159 (240)
T ss_dssp EEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHG
T ss_pred EEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCCeeeCCCCcchhhheeeeEEEEecCccccCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999985 2 368999999999
Q ss_pred HCCCcccccCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHhCCCCeeecccceeecCCccccCHHHHHHHHHHHHHH
Q 020672 230 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKL 309 (323)
Q Consensus 230 EaGAEDV~~~~~~ed~~~ed~~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~~~Vel~~e~~~~~~~lid~L 309 (323)
|+|||||++. ++.|+|+|+|++|.+|+++|+++||++.+ ++++|+|+++|+|++|+++++++|||+|
T Consensus 160 eaGAeDv~~e------------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~e~~~~~~klid~L 226 (240)
T 1mw7_A 160 DYGLEELEEV------------EDKIIIRGDYNSFKLLNEGFESLKLPILK-ASLQRIATTPIELNDEQMELTEKLLDRI 226 (240)
T ss_dssp GGTEEEEEEE------------TTEEEEEEEGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCBCCCHHHHHHHHHHHHHH
T ss_pred HCCCceeecC------------CceEEEEECHHHHHHHHHHHHHcCCCeee-eeeEeCCCCCcccCHHHHHHHHHHHHHH
Confidence 9999999641 14799999999999999999999999987 5999999999999999999999999999
Q ss_pred ccCCCcceeeccC
Q 020672 310 LELDDVDAVYTDQ 322 (323)
Q Consensus 310 ee~dDV~~VY~N~ 322 (323)
+++||||+||||-
T Consensus 227 ed~DDVq~Vy~N~ 239 (240)
T 1mw7_A 227 EDDDDVVALYTNI 239 (240)
T ss_dssp HTSTTEEEEEESB
T ss_pred hcccCcchhhcCC
Confidence 9999999999994
No 5
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=81.53 E-value=1 Score=35.54 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=44.0
Q ss_pred ceEEEEeCcccHHHHHHHHHh-CCCCeeecccceeecCCccccCHHHHHHHHHHHHHHccCCCccee
Q 020672 253 RYYKVVSTSDNYTDITTKLRE-AGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318 (323)
Q Consensus 253 ~~~~v~~~p~~l~~V~~~L~~-~G~~i~~~~~i~~iP~~~Vel~~e~~~~~~~lid~Lee~dDV~~V 318 (323)
..+.|.|.|..+..|.++|.+ .|.++....+..+ +--|.+..+..+.+.+++++++.+|.|..+
T Consensus 8 sslvV~~~p~~~~~V~~~L~~ipgvEi~~~~~~~G--kiVV~iEa~~~~~l~~~i~~I~~i~GVlst 72 (95)
T 2jsx_A 8 CSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSG--QLIVVVEAEDSETLIQTIESVRNVEGVLAV 72 (95)
T ss_dssp EEEEEEECTTSHHHHHHHHTTSTTEEEEEEETTTT--EEEEEEEESSHHHHHHHHHHHTTSTTEEEE
T ss_pred EEEEEEECCCCHHHHHHHHHCCCCeEEEEecCCCC--CEEEEEEeCCHHHHHHHHHHHhcCCCccEE
Confidence 457889999999999999998 3554421101011 233555555666667788999999998774
No 6
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=72.25 E-value=4.9 Score=29.22 Aligned_cols=61 Identities=13% Similarity=-0.001 Sum_probs=39.5
Q ss_pred eCcccHHHHHHHHHhCCCCeeecccceeecC---CccccCHHHHHHHHHHHHHHccCCCcceeec
Q 020672 259 STSDNYTDITTKLREAGIPFETDNGSELLPI---TTIEVDDEAMELNKELIAKLLELDDVDAVYT 320 (323)
Q Consensus 259 ~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~---~~Vel~~e~~~~~~~lid~Lee~dDV~~VY~ 320 (323)
=.|-.+..|...|.+.|+.|... ...-... -.+.++-.+.+.+..++++|+++++|..|+-
T Consensus 14 Dr~G~L~~I~~~la~~~inI~~i-~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~ 77 (88)
T 2ko1_A 14 DKNGMTNQITGVISKFDTNIRTI-VLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVER 77 (88)
T ss_dssp CCTTHHHHHHHHHTTSSSCEEEE-EEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCCeEEE-EEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEE
Confidence 34667999999999999998642 2211111 1111221223456789999999999998853
No 7
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=63.71 E-value=10 Score=30.77 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=36.1
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCCeeec--------------------ccceeecCCcccc--CHHHHHHHHHHH
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIPFETD--------------------NGSELLPITTIEV--DDEAMELNKELI 306 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~i~~~--------------------~~i~~iP~~~Vel--~~e~~~~~~~li 306 (323)
.++.+..|+.+..|+++|.+.|+.-... ..+.++|+..+++ ++++.+.+.+.|
T Consensus 3 ~I~AIIrp~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I 77 (119)
T 3ncq_A 3 KIEAIVRAEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLI 77 (119)
T ss_dssp EEEEEECTTTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHH
Confidence 4778999999999999999988762110 0145578777777 666654433333
No 8
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=62.55 E-value=12 Score=30.32 Aligned_cols=53 Identities=26% Similarity=0.247 Sum_probs=35.2
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCCeeec--------------------ccceeecCCcccc--CHHHHHHHHHHH
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIPFETD--------------------NGSELLPITTIEV--DDEAMELNKELI 306 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~i~~~--------------------~~i~~iP~~~Vel--~~e~~~~~~~li 306 (323)
.++.+..|+.+..|+++|.+.|+.-... ..+.++|+..+++ ++++.+.+.+.|
T Consensus 3 ~I~AIIrp~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I 77 (118)
T 3t9z_A 3 MVVAVIRPEKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAI 77 (118)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHH
Confidence 4778999999999999999998762110 0145578877777 666655443333
No 9
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=62.30 E-value=11 Score=30.28 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=34.8
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCCe---eec-----------------ccceeecCCcccc--CHHHHHHHH
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIPF---ETD-----------------NGSELLPITTIEV--DDEAMELNK 303 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~i---~~~-----------------~~i~~iP~~~Vel--~~e~~~~~~ 303 (323)
.++.+..|+.+..|+++|.+.|+.- .+. ..+.++|+..+++ ++++.+.+.
T Consensus 3 ~I~AIIrp~kl~~vk~AL~~~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv 74 (116)
T 4aff_A 3 KIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVI 74 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHH
Confidence 4778999999999999999987762 110 0134578877777 666654433
No 10
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=55.56 E-value=13 Score=29.64 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.6
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCC
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIP 277 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~ 277 (323)
.++++..|+.+..|+++|.+.|+.
T Consensus 3 ~I~aIIr~~kl~~vk~AL~~~G~~ 26 (112)
T 3mhy_A 3 LVMAIIKPFKLDEVREALTSLGIQ 26 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 477899999999999999998776
No 11
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=54.99 E-value=11 Score=29.38 Aligned_cols=67 Identities=15% Similarity=0.028 Sum_probs=44.6
Q ss_pred eEEEEeCcccHHHHHHHHH----hCCCCeeecccceeecCCcccc------CHHHHHHHHHHHHHHccCCCcceeecc
Q 020672 254 YYKVVSTSDNYTDITTKLR----EAGIPFETDNGSELLPITTIEV------DDEAMELNKELIAKLLELDDVDAVYTD 321 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~----~~G~~i~~~~~i~~iP~~~Vel------~~e~~~~~~~lid~Lee~dDV~~VY~N 321 (323)
.+.|+|.+.+-..|+..|. ..+|.+..- +..-++...|+| +..+-..++.++..|.-.|.|..++.+
T Consensus 10 ~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l-~s~~~~~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~W~ 86 (94)
T 2lqj_A 10 QVRVICRPKAETYVRAHIVQRTSSNDITLRGI-RTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWY 86 (94)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHTEEEEEE-EEEECSSSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred EEEEEECcHHHHHHHHHHHHHHhcCCCceeEe-eeecCCCCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEEEE
Confidence 3567999999888887764 468887632 222222333433 112234567899999999999999876
No 12
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=52.53 E-value=18 Score=30.94 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=42.0
Q ss_pred EeCcccHHHHHHHHHhCCCCeeecccceeecC-----Ccc--ccCHHHHHHHHHHHHHHccCCCcceeec
Q 020672 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPI-----TTI--EVDDEAMELNKELIAKLLELDDVDAVYT 320 (323)
Q Consensus 258 ~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~-----~~V--el~~e~~~~~~~lid~Lee~dDV~~VY~ 320 (323)
.=.|--|..|...|.+.||.|.+- ...|. ..+ .++ .+.+.++.+++.|..++||.+|+.
T Consensus 11 ~NrpGvLarIt~lfs~rg~NI~Sl---~v~~t~d~~~sriti~V~-~d~~~leqI~kqL~Kl~dV~~V~r 76 (164)
T 2f1f_A 11 ENESGALSRVIGLFSQRGYNIESL---TVAPTDDPTLSRMTIQTV-GDEKVLEQIEKQLHKLVDVLRVSE 76 (164)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCSEE---EEEECSCSSEEEEEEEEE-SCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred eCCCcHHHHHHHHHHHCCCCeeec---eeeecCCCCEEEEEEEEe-ccHHHHHHHHHHHcCCCCEEEEEE
Confidence 346788999999999999999742 22232 112 333 223556789999999999999975
No 13
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=51.09 E-value=17 Score=29.11 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=34.1
Q ss_pred eEEEEeCcccHHHHHHHHHhCCC-C------e-----eec---------ccceeecCCcccc--CHHHHHHH
Q 020672 254 YYKVVSTSDNYTDITTKLREAGI-P------F-----ETD---------NGSELLPITTIEV--DDEAMELN 302 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~-~------i-----~~~---------~~i~~iP~~~Vel--~~e~~~~~ 302 (323)
.++.+..|+.+..|+++|.+.|+ . + +.. ..+.++|+..+++ ++++.+.+
T Consensus 5 kI~AIIrp~kl~~Vk~AL~~~G~d~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pk~kieivV~d~~ve~v 76 (115)
T 3l7p_A 5 KIEAIIRSDKLEDLKAALVQSGFIKGMTISQVLGFGNQRGYTEYVRGQKITPTLLAKVKVEIVAHDAAVEEM 76 (115)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHTCGGGEEEEEEEEEC----------------CEEEEEEEEEEECGGGHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCccEEEEEEEeEcccCCCceeeccceeeecccceEEEEEEEcHHHHHHH
Confidence 57889999999999999999999 3 1 000 0134678888877 66665443
No 14
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=44.40 E-value=25 Score=30.17 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=41.7
Q ss_pred eCcccHHHHHHHHHhCCCCeeecccceeecCC-----cc--ccCHHHHHHHHHHHHHHccCCCcceeec
Q 020672 259 STSDNYTDITTKLREAGIPFETDNGSELLPIT-----TI--EVDDEAMELNKELIAKLLELDDVDAVYT 320 (323)
Q Consensus 259 ~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~~-----~V--el~~e~~~~~~~lid~Lee~dDV~~VY~ 320 (323)
=.|--|..|...|.+.||+|.+- ...|.. .+ .++. +...++.+++.|..+.||.+|+.
T Consensus 13 NrpGvL~rI~~lfs~rg~NI~Sl---~v~~t~d~g~sritivV~~-d~~~leql~kQL~Kl~dV~~V~~ 77 (165)
T 2pc6_A 13 NEAGALSRVAGLFSARGYNIESL---SVAPTEDPTLSRMTLVTNG-PDEIVEQITKQLNKLIEVVKLID 77 (165)
T ss_dssp CSTTHHHHHHHHHHHHTCCCCEE---EEEECSSTTEEEEEEEEEE-CHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCcEEEE---EEEecCCCCEEEEEEEEec-cHHHHHHHHHHhcCCCCEEEEEE
Confidence 46888999999999999999742 223331 12 3332 23556789999999999999975
No 15
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=38.14 E-value=18 Score=26.35 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=31.0
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCCeeecccceeecC--CccccCHHHHH
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI--TTIEVDDEAME 300 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~--~~Vel~~e~~~ 300 (323)
.|.+.|+-..++.|...|++.|+.+.. ..|--. -.+.|+.++.+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~---~~Y~~~V~l~v~vp~~~~~ 54 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIIN---SDVQAFVLLRVALPAAKVA 54 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEE---EEEEEEEEEEEEECC-CC-
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEc---ccccCeEEEEEEECHHHHH
Confidence 488999999999999999999998863 455433 23444554433
No 16
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=34.88 E-value=1.6e+02 Score=24.83 Aligned_cols=134 Identities=10% Similarity=0.065 Sum_probs=72.9
Q ss_pred EEEEecCChhhHHHHHHHHHhhcCccccCCcceeeece-eeEE--EEEeCCCCCHHHHHHHHHH-CCCcccccCCCCCCC
Q 020672 170 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR-RARV--VNIKFTDADKDQLLDIALD-AGAEDVIEPPVNEDD 245 (323)
Q Consensus 170 IVE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f~F~-~kGv--I~v~~~~~d~D~lle~AIE-aGAEDV~~~~~~ed~ 245 (323)
.+.++.+|+...+++|-.+|++.|.++-. =++...-+ ..-. |.+..+....++++..--. .++-+|.... +++
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~S-l~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~--~~~ 81 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIES-LTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELG--QGA 81 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSE-EEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGG--GSC
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeee-ceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcC--Ccc
Confidence 56788899999999999999999998742 12221111 1122 2344221122333332222 3444443320 000
Q ss_pred CcccccCceEEEEeCcccHHHHHHHHHhCCCCeeecccceeecC-CccccCHHHHHHHHHHHHHHccCC
Q 020672 246 TDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI-TTIEVDDEAMELNKELIAKLLELD 313 (323)
Q Consensus 246 ~~ed~~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~-~~Vel~~e~~~~~~~lid~Lee~d 313 (323)
.- +.+--.++|-|++.+-..+....+-+.-.+. ..-|. -.+|++... +++..|++.|+..-
T Consensus 82 ~v-~rEl~liKv~~~~~~r~~i~~~~~~fra~iv-----dv~~~~~~ie~tg~~-~ki~~~~~~l~~~g 143 (164)
T 2f1f_A 82 HV-EREIMLVKIQASGYGRDEVKRNTEIFRGQII-----DVTPSLYTVQLAGTS-GKLDAFLASIRDVA 143 (164)
T ss_dssp EE-EEEEEEEEEECCTHHHHHHHHHHHHTTCEEE-----EECSSEEEEEEEECH-HHHHHHHHHHTTTS
T ss_pred cc-eeEEEEEEEECCcccHHHHHHHHHHcCCEEE-----EECCCEEEEEEeCCH-HHHHHHHHHHHhcC
Confidence 00 1122457888888776777777776655544 22354 457775533 45667888887654
No 17
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=33.99 E-value=1.7e+02 Score=23.04 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=60.7
Q ss_pred EEEecCChhhHHHHHHHHHhhcCccccCCcceeeeceeeEEEEEeCCCCCHHHHHHHHHHCCCcccccCCCCCCCCcccc
Q 020672 171 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDR 250 (323)
Q Consensus 171 VE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f~F~~kGvI~v~~~~~d~D~lle~AIEaGAEDV~~~~~~ed~~~ed~ 250 (323)
+.+.-.|+...++.|-.+|.++|-++-. -++ ......|++.+.. .+.+.+.+..-+.|..-....
T Consensus 9 i~v~v~d~~G~l~~i~~~la~~~inI~~-i~~-~~~~~~~~~~~~~--~d~~~a~~~L~~~G~~v~~~s----------- 73 (144)
T 2f06_A 9 LSIFLENKSGRLTEVTEVLAKENINLSA-LCI-AENADFGILRGIV--SDPDKAYKALKDNHFAVNITD----------- 73 (144)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCCEEE-EEE-EECSSCEEEEEEE--SCHHHHHHHHHHTTCCEEEEE-----------
T ss_pred EEEEecCCCcHHHHHHHHHHHCCCCEEE-EEE-EecCCCCEEEEEe--CCHHHHHHHHHHcCCeEeeee-----------
Confidence 3445678888999999999999988631 111 2233336665553 366766665545777543210
Q ss_pred cCceEEEEeCcccHHHHHHHHHhCCCCeee
Q 020672 251 AERYYKVVSTSDNYTDITTKLREAGIPFET 280 (323)
Q Consensus 251 ~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~ 280 (323)
--.+.+--.|--+.++.+.|.+.|+.|..
T Consensus 74 -vv~v~~~d~pGvla~i~~~L~~~~InI~~ 102 (144)
T 2f06_A 74 -VVGISCPNVPGALAKVLGFLSAEGVFIEY 102 (144)
T ss_dssp -EEEEEEESSTTHHHHHHHHHHHTTCCEEE
T ss_pred -EEEEEeCCCCcHHHHHHHHHHHCCCCEEE
Confidence 01123445688999999999999999953
No 18
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=33.46 E-value=41 Score=27.26 Aligned_cols=51 Identities=6% Similarity=0.068 Sum_probs=34.7
Q ss_pred ceEEEEeCcccHHHHHHHHHhCCCCeeecccc-ee--ecCCcccc--CHHHHHHHH
Q 020672 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL--LPITTIEV--DDEAMELNK 303 (323)
Q Consensus 253 ~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i-~~--iP~~~Vel--~~e~~~~~~ 303 (323)
..+.-+..|.+++.|+++|.+.||.....++. .| ..++.+++ +|++.+.+.
T Consensus 7 KlI~AIIrp~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi 62 (114)
T 3m05_A 7 KLVIAIVQDKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVL 62 (114)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHH
Confidence 46778999999999999999999985332222 22 23566666 666654433
No 19
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=33.26 E-value=47 Score=26.11 Aligned_cols=67 Identities=18% Similarity=0.074 Sum_probs=41.6
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCCeeecccceeecCCccccCHHHHHHHHHHH-HHHccCCCcceeecc
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELI-AKLLELDDVDAVYTD 321 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~~~Vel~~e~~~~~~~li-d~Lee~dDV~~VY~N 321 (323)
.+.+.+++..+..+.+.|.+..-..+ ...+.--..-.+.+...+++.+..++ +.|..+|+|.++.+.
T Consensus 67 ~v~~~~~~~~~~~~~~~l~~~~~v~~-~~~~~G~~d~~~~v~~~d~~~l~~~~~~~l~~~~gV~~~~t~ 134 (141)
T 1i1g_A 67 ITGVDTKPEKLFEVAEKLKEYDFVKE-LYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVCPA 134 (141)
T ss_dssp EEEEEECGGGHHHHHHHHHHSTTEEE-ECCCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEE
T ss_pred EEEEEECchhHHHHHHHHhcCCCeEE-EEEecCCCCEEEEEEECCHHHHHHHHHHHhhcCCCEeEEEEE
Confidence 45667789999999999988532222 11111111122333333455567788 899999999988764
No 20
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=32.82 E-value=19 Score=28.79 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHccCCCccee
Q 020672 298 AMELNKELIAKLLELDDVDAV 318 (323)
Q Consensus 298 ~~~~~~~lid~Lee~dDV~~V 318 (323)
+...|.+|+.-|++..|||+|
T Consensus 14 eAAaFRrL~~HL~~r~DVQNI 34 (104)
T 3fyb_A 14 EAAAFRHLLRHLDEHKDVQNI 34 (104)
T ss_dssp HHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHHHHHHHHHHHhCcchhHH
Confidence 456789999999999999987
No 21
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=31.69 E-value=40 Score=29.76 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=72.7
Q ss_pred EEEEEecCChhhHHHHHHHHHhhcCccccCCcceee--eceeeE-EEEEeCCCCCHHHHHHHHHHCCCc--ccccCCCCC
Q 020672 169 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF--KFRRAR-VVNIKFTDADKDQLLDIALDAGAE--DVIEPPVNE 243 (323)
Q Consensus 169 iIVE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f--~F~~kG-vI~v~~~~~d~D~lle~AIEaGAE--DV~~~~~~e 243 (323)
-.+.++.+|+...++.|-.+|++.|-++-. =+|.. .+.... .|.+..+ |..++.....+-. ||.......
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~S-LtV~~ted~gisRitIvV~g~----e~~ieqL~kQL~KLidVikV~dl~ 104 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISS-ITVGESETPGLSRLVIMVKGD----DKTIEQIEKQAYKLVEVVKVTPID 104 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEE-EEEEECSSTTEEEEEEEEEEC----TTHHHHHHHHHTTSTTEEEEEECC
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEE-EEeeccCCCCEEEEEEEEECC----HHHHHHHHHHhcCcCceEEEEEec
Confidence 367889999999999999999999987731 11211 122122 2334433 3444444443333 554321111
Q ss_pred CCCcc--cccCceEEEEeCcccHHHHHHHHHhCCCCeeecccceeecC-CccccCHHHHHHHHHHHHHHccC
Q 020672 244 DDTDE--DRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI-TTIEVDDEAMELNKELIAKLLEL 312 (323)
Q Consensus 244 d~~~e--d~~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~-~~Vel~~e~~~~~~~lid~Lee~ 312 (323)
++.++ +.+--.++|-|++. -..+....+-+.-.+. ..-|. -.+|++... ++++.|++.|+..
T Consensus 105 ~~~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~iv-----Dv~~~s~~iE~tG~~-~ki~a~i~~l~~~ 169 (193)
T 2fgc_A 105 PLPENRVEREMALIKVRFDED-KQEIFQLVEIFRGKII-----DVSREGAIIEITGAR-SKVEAFINLLPQK 169 (193)
T ss_dssp SSGGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEE-----EECSSEEEEEEEECH-HHHHHHHHHSCGG
T ss_pred CCCCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEE-----EEcCCEEEEEEcCCH-HHHHHHHHHhhhh
Confidence 10011 12224578888887 6677776666555544 22354 457775433 4456778877653
No 22
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=31.61 E-value=56 Score=23.64 Aligned_cols=64 Identities=11% Similarity=0.242 Sum_probs=41.2
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCCeeecccceee--cC-CccccCHHHHHHHHHHHH-HHccCCCcceeecc
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELL--PI-TTIEVDDEAMELNKELIA-KLLELDDVDAVYTD 321 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~i--P~-~~Vel~~e~~~~~~~lid-~Lee~dDV~~VY~N 321 (323)
++.|.++|.....+.++|.+.. ++.. .-.+ +. -.+.+--.+++.+.+|++ .|..+|+|.++.+.
T Consensus 5 ~v~v~~~~~~~~~~~~~l~~~p-eV~e---~~~vtG~~D~ll~v~~~d~~~l~~~i~~~l~~~~gV~~~~T~ 72 (83)
T 2cvi_A 5 FILMVTAAGKEREVMEKLLAMP-EVKE---AYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTM 72 (83)
T ss_dssp EEEEEECTTCHHHHHHHHHTST-TEEE---EEECBSSCSEEEEEEESSHHHHHHHHHTTGGGCTTEEEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHhCCC-CeeE---EEEEcccCCEEEEEEECCHHHHHHHHHHHhccCCCEeEEEEE
Confidence 5678889999999999998742 2221 1111 11 123332234555677886 89999999998775
No 23
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=30.64 E-value=45 Score=26.00 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=21.4
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCC
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIP 277 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~ 277 (323)
.++++..|+.+..|+++|.+.|+.
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~G~~ 26 (112)
T 1hwu_A 3 QVTAIIKPFKLDEVRESLAEVGVT 26 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467899999999999999998775
No 24
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=30.49 E-value=33 Score=25.96 Aligned_cols=28 Identities=7% Similarity=0.286 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhccCC
Q 020672 123 AAVLEKAKELDVPKDIVERNIKRASEKG 150 (323)
Q Consensus 123 a~aI~kAK~~nmPKd~IErAIkra~g~~ 150 (323)
.++.+-||+.++||..|.|++-+=..++
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG 57 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKED 57 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3478889999999999999998766543
No 25
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=29.99 E-value=47 Score=25.99 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.9
Q ss_pred ceEEEEeCcccHHHHHHHHHhCCCC
Q 020672 253 RYYKVVSTSDNYTDITTKLREAGIP 277 (323)
Q Consensus 253 ~~~~v~~~p~~l~~V~~~L~~~G~~ 277 (323)
..++++..|+.+..|+++|.+.|+.
T Consensus 4 k~I~aIIr~~~~~~v~~aL~~~G~~ 28 (114)
T 3bzq_A 4 KLITAIVKPFTLDDVKTSLEDAGVL 28 (114)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 3577899999999999999998775
No 26
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=29.66 E-value=48 Score=26.18 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.3
Q ss_pred ceEEEEeCcccHHHHHHHHHhCCCC
Q 020672 253 RYYKVVSTSDNYTDITTKLREAGIP 277 (323)
Q Consensus 253 ~~~~v~~~p~~l~~V~~~L~~~G~~ 277 (323)
..+++++.|+.+..|+++|.+.|+.
T Consensus 6 k~I~aIIr~~~~~~v~~AL~~~G~~ 30 (116)
T 2ns1_B 6 KLVTVIIKPFKLEDVREALSSIGIQ 30 (116)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4578899999999999999998775
No 27
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=29.06 E-value=50 Score=25.79 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.4
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCC
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIP 277 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~ 277 (323)
.++.++.|+.+..|+++|.+.|+.
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~G~~ 26 (112)
T 2eg2_A 3 KIEAIIKPFKLDEVKDALVEIGIG 26 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467899999999999999998775
No 28
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=28.22 E-value=50 Score=24.45 Aligned_cols=26 Identities=12% Similarity=0.460 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhhcCc--cccCCcceeee
Q 020672 180 RSVAAVREVVKDCGG--KMADPGSVMFK 205 (323)
Q Consensus 180 RT~~~vR~~f~K~GG--~l~~~gsV~f~ 205 (323)
-+.+.|+++|+.-+| +|.++|-+.|.
T Consensus 24 lcl~SiqTafNQGaGt~sLs~SG~isf~ 51 (73)
T 1p65_A 24 LCLSSIQTAFNQGAGTCTLSDSGRISYT 51 (73)
T ss_dssp HHHHHHHHHHHHTCSEEEECTTSCEEEE
T ss_pred HHHHHHHHHHhCCCceEEeccCCceeEE
Confidence 467899999999988 69999998885
No 29
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=27.90 E-value=54 Score=25.74 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.8
Q ss_pred ceEEEEeCcccHHHHHHHHHhCCCC
Q 020672 253 RYYKVVSTSDNYTDITTKLREAGIP 277 (323)
Q Consensus 253 ~~~~v~~~p~~l~~V~~~L~~~G~~ 277 (323)
..+++++.|..+..|+++|.+.|+.
T Consensus 4 k~I~aII~~~~~~~v~~aL~~~G~~ 28 (114)
T 2gw8_A 4 KKIEAIVKPFKLDDVREALTEIGIT 28 (114)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 3577899999999999999998775
No 30
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.69 E-value=42 Score=27.21 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=35.0
Q ss_pred cCCcEEEEEEecCC-hhhHHHHHHHHHhhcCccccCCcceeeec-eeeEEEEEe
Q 020672 164 YGGVSIVVEVLTDK-ITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIK 215 (323)
Q Consensus 164 PgGvaiIVE~lTDN-~nRT~~~vR~~f~K~GG~l~~~gsV~f~F-~~kGvI~v~ 215 (323)
|-|+.+.|.-+.++ . +..+|+.+|+++|- + ..|-|.- +..|+|.++
T Consensus 16 ~~G~il~v~~l~~~~~--sredLke~F~~~G~-V---~~Vd~~~g~~tgfVrf~ 63 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQT--CREDLHILFSNHGE-I---KWIDFVRGAKEGIILFK 63 (121)
T ss_dssp CCCCEEEEEESCCSSC--CHHHHHHHTCSSCC-E---EEEECCTTCSEEEEEES
T ss_pred cCCeEEEEecCCCCcC--CHHHHHHHHHhcCC-E---EEEEEecCCCEEEEEEC
Confidence 78999999999888 5 48999999999753 2 2444544 446899996
No 31
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.37 E-value=24 Score=28.29 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHccCCCccee
Q 020672 298 AMELNKELIAKLLELDDVDAV 318 (323)
Q Consensus 298 ~~~~~~~lid~Lee~dDV~~V 318 (323)
+...|.+|+.-|.+..|||+|
T Consensus 15 eAAaFRRLv~HL~~r~DVQNI 35 (105)
T 2o35_A 15 EAAVFRRLLEHLRERSDVQNI 35 (105)
T ss_dssp HHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHHHhCcchhHH
Confidence 456899999999999999987
No 32
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=27.05 E-value=55 Score=25.97 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=21.6
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCC
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIP 277 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~ 277 (323)
.+++++.|..+..|+++|.+.|+.
T Consensus 5 ~I~aII~~~~~~~v~~aL~~~G~~ 28 (119)
T 2j9c_A 5 KVEAIIRPEKLEIVKKALSDAGYV 28 (119)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 477899999999999999998875
No 33
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=26.57 E-value=1.2e+02 Score=25.32 Aligned_cols=110 Identities=11% Similarity=0.081 Sum_probs=57.7
Q ss_pred EEEEEecCChhhHHHHHHHHHhhcCccccCCcceeeeceeeE--EEEEeCCCCCHHHH----HHHHHHCCCcccccCCCC
Q 020672 169 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQL----LDIALDAGAEDVIEPPVN 242 (323)
Q Consensus 169 iIVE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f~F~~kG--vI~v~~~~~d~D~l----le~AIEaGAEDV~~~~~~ 242 (323)
++|-+...++...++.|-.+|..+|+++-+.. .|.-.... .+.+..+..+.+++ ...+-+.|.+-..... .
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~--~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-~ 83 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSR--IAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRT-S 83 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEE--EEEETTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEE-C
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeee--eeecCCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeC-C
Confidence 45667778899999999999999999986522 12111111 12232221122222 2222233433211100 0
Q ss_pred CCCCcccccCceEEEEeC--cccHHHHHHHHHhCCCCeeec
Q 020672 243 EDDTDEDRAERYYKVVST--SDNYTDITTKLREAGIPFETD 281 (323)
Q Consensus 243 ed~~~ed~~~~~~~v~~~--p~~l~~V~~~L~~~G~~i~~~ 281 (323)
....+.....-.+.+.|+ |.-+.+|...|.+.|+.|...
T Consensus 84 ~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~ 124 (192)
T 1u8s_A 84 PHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASL 124 (192)
T ss_dssp CCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHh
Confidence 000000001124566675 567889999999999998643
No 34
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=26.54 E-value=64 Score=31.03 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhccCCccceeEEEEEEEe-cCCcEEEEEEecCChhhHHHHHH
Q 020672 123 AAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVR 186 (323)
Q Consensus 123 a~aI~kAK~~nmPKd~IErAIkra~g~~~~~~~e~~YEg~G-PgGvaiIVE~lTDN~nRT~~~vR 186 (323)
..|+.-|...++|.+.|.++|+...+-.. ++|..+ .+|+.+|.|+.--|+.-+..-++
T Consensus 284 laAia~a~~lgi~~~~i~~~L~~f~~~~g------R~e~v~~~~g~~vi~D~~a~np~a~~~al~ 342 (451)
T 3lk7_A 284 LATIAVAKLAGISNQVIRETLSNFGGVKH------RLQSLGKVHGISFYNDSKSTNILATQKALS 342 (451)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHCCCCTT------SSEEEEEETTEEEEECTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCC------cEEEEeeeCCcEEEEeCCCCCHHHHHHHHH
Confidence 45677788999999999999998665322 333333 47888888876666665555443
No 35
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=26.42 E-value=42 Score=26.75 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=32.2
Q ss_pred ceEEEEeCcccHHHHHHHHHhC---CCCeeecc-----------c---ceeecCCcccc--C-HHHHHHH
Q 020672 253 RYYKVVSTSDNYTDITTKLREA---GIPFETDN-----------G---SELLPITTIEV--D-DEAMELN 302 (323)
Q Consensus 253 ~~~~v~~~p~~l~~V~~~L~~~---G~~i~~~~-----------~---i~~iP~~~Vel--~-~e~~~~~ 302 (323)
..+++++.|..+..|+++|++. ||.+.... + +.+.|+..+++ + +|..+.+
T Consensus 7 KkIeaIi~p~kl~~V~~aL~~~Gv~G~TV~~v~G~G~q~~~~~~~~~~~~~~~kvkieivv~~de~vd~v 76 (111)
T 3dfe_A 7 NKLVIVTEKVLLKKVAKIIEEAGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLTENREMAEKI 76 (111)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHTCSCCEEEEEBC------------------CEEEEEEEESSHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCCcEEEEecEeecCCCCCcCceEEEeccCCceEEEEEECCHHHHHHH
Confidence 4689999999999999999986 44442110 0 13568877666 3 6665544
No 36
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=26.21 E-value=1.2e+02 Score=23.98 Aligned_cols=49 Identities=27% Similarity=0.317 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCCeeecccceeecC-CccccC-HHHHHHHHHHHHHHccCCCcceeecc
Q 020672 265 TDITTKLREAGIPFETDNGSELLPI-TTIEVD-DEAMELNKELIAKLLELDDVDAVYTD 321 (323)
Q Consensus 265 ~~V~~~L~~~G~~i~~~~~i~~iP~-~~Vel~-~e~~~~~~~lid~Lee~dDV~~VY~N 321 (323)
.++.+.|++.|++++.. |- |.+|=+ +|-++.++++.+.+. .++.+||++
T Consensus 36 a~~i~vi~~sGL~y~~~------pmgT~IEGe~devm~vvk~~~e~~~--~g~~RV~t~ 86 (106)
T 1vk8_A 36 DRAIEKISSWGMKYEVG------PSNTTVEGEFEEIMDRVKELARYLE--QFAKRFVLQ 86 (106)
T ss_dssp HHHHHHHHTTCSCEEEC------SSCEEEEECHHHHHHHHHHHHHHHT--TTCSEEEEE
T ss_pred HHHHHHHHHcCCCeEeC------CCccEEEcCHHHHHHHHHHHHHHHH--cCCCEEEEE
Confidence 46666777777776532 64 777755 345778888888887 688888875
No 37
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=25.76 E-value=62 Score=25.41 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=21.5
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCC
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIP 277 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~ 277 (323)
.++++..|..+..|+++|.+.|+.
T Consensus 3 ~I~aII~~~~~~~V~~aL~~~G~~ 26 (116)
T 1vfj_A 3 LIVAIVRPEKLNEVLKALFQAEVR 26 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHhCCCC
Confidence 477899999999999999998775
No 38
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=24.78 E-value=2e+02 Score=24.43 Aligned_cols=133 Identities=11% Similarity=0.036 Sum_probs=71.2
Q ss_pred EEEEecCChhhHHHHHHHHHhhcCccccCCcceeee--ceeeE-EEEEeCCCCCHHHHHHHHHH-CCCcccccCCCCCCC
Q 020672 170 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK--FRRAR-VVNIKFTDADKDQLLDIALD-AGAEDVIEPPVNEDD 245 (323)
Q Consensus 170 IVE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f~--F~~kG-vI~v~~~~~d~D~lle~AIE-aGAEDV~~~~~~ed~ 245 (323)
.+.++.+|+....++|-.+|++.|.++-. =++... +.... .|.+..+....+++...--. .++-+|.... ++
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~S-l~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~---~~ 81 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIES-LSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS---SE 81 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCE-EEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG---GS
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEEE-EEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcC---Cc
Confidence 56788899999999999999999998741 122211 11111 22343221122333222222 2333443320 00
Q ss_pred CcccccCceEEEEeCcccHHHHHHHHHhCCCCeeecccceeecC-CccccCHHHHHHHHHHHHHHccC
Q 020672 246 TDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI-TTIEVDDEAMELNKELIAKLLEL 312 (323)
Q Consensus 246 ~~ed~~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~-~~Vel~~e~~~~~~~lid~Lee~ 312 (323)
+-=+.+--.++|-|++.+-..+....+-+.-.+. ..-|. -.+|++... ++++.|++.|+..
T Consensus 82 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~iv-----dv~~~~~~ie~tg~~-~ki~~~~~~l~~~ 143 (165)
T 2pc6_A 82 GYVERELMLVKVRAVGKDREEMKRLADIFRGNII-----DVTNELYTIELTGTR-SKLDGFLQAVDCN 143 (165)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEE-----EEETTEEEEEEEECH-HHHHHHHHHSCGG
T ss_pred ceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEE-----EEcCCEEEEEEcCCH-HHHHHHHHHhhhc
Confidence 0001222457888888776777777776655543 23355 457775433 4456777777653
No 39
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=23.88 E-value=1.3e+02 Score=27.99 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=40.2
Q ss_pred eEEEEeCc--------ccHHHHHHHHHhCCCCeeecccceeecCCccccCHHHHHHHHHHHHHHccCCCcceeec
Q 020672 254 YYKVVSTS--------DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320 (323)
Q Consensus 254 ~~~v~~~p--------~~l~~V~~~L~~~G~~i~~~~~i~~iP~~~Vel~~e~~~~~~~lid~Lee~dDV~~VY~ 320 (323)
.+-|+++. ..+....+.|++.||++... ...+.-.. -+...+.++...|.+++. +|+|..|+.
T Consensus 14 ~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~-~~~~~~~~--~~agtd~~Ra~dL~~a~~-Dp~i~aI~~ 84 (327)
T 4h1h_A 14 EIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFG-EHVAEMDC--MMSSSIRSRVADIHEAFN-DSSVKAILT 84 (327)
T ss_dssp EEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEEC-TTTTCCCT--TSSCCHHHHHHHHHHHHH-CTTEEEEEE
T ss_pred EEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEEC-cchhhccC--cccCCHHHHHHHHHHHhh-CCCCCEEEE
Confidence 56666654 24667778899999998753 22222222 243344566677888876 488999875
No 40
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=23.56 E-value=87 Score=30.10 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhccCCccceeEEEEEEEe-cCCcEEEEEEecCChhhHHHHHHHH
Q 020672 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVREV 188 (323)
Q Consensus 122 La~aI~kAK~~nmPKd~IErAIkra~g~~~~~~~e~~YEg~G-PgGvaiIVE~lTDN~nRT~~~vR~~ 188 (323)
+..|+.-|...++|.+.|.++|+...+-.. ++|... ++|+.+|+++.--|+.-+..-++.+
T Consensus 286 alaA~a~~~~lgi~~~~i~~~L~~~~~~~g------R~e~~~~~~~~~vidDsyahnp~s~~~~l~~l 347 (452)
T 1gg4_A 286 ALAAAALSMSVGATLDAIKAGLANLKAVPG------RLFPIQLAENQLLLDDSYNANVGSMTAAVQVL 347 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTTCCCCTT------SSEEEEEETTEEEEECCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------CceEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 346777788899999999999987554321 222222 3578888888877877666655544
No 41
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=23.08 E-value=74 Score=30.42 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhccCCccceeEEEEEEEe-cCCcEEEEEEecCChhhHHHHHH
Q 020672 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVR 186 (323)
Q Consensus 122 La~aI~kAK~~nmPKd~IErAIkra~g~~~~~~~e~~YEg~G-PgGvaiIVE~lTDN~nRT~~~vR 186 (323)
...|+.-|...++|.+.|.++|+...+-.. ++|..+ .+|+.+|.|+.--|+.-+..-++
T Consensus 272 alaA~a~~~~lgi~~~~i~~~L~~f~~~~g------R~e~~~~~~~~~vi~Ds~a~np~a~~~al~ 331 (439)
T 2x5o_A 272 ALAALALADAAGLPRASSLKALTTFTGLPH------RFEVVLEHNGVRWINDSKATNVGSTEAALN 331 (439)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCCCCTT------SSEEEEEETTEEEEECTTCCSHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------ceEEEEEECCEEEEEeCCCCCHHHHHHHHH
Confidence 345667788899999999999997654322 233332 35788888876566665555444
No 42
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=22.80 E-value=88 Score=22.15 Aligned_cols=64 Identities=11% Similarity=0.246 Sum_probs=40.0
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCCeeecccceee--cCC-ccccCHHHHHHHHHHHH-HHccCCCcceeecc
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELL--PIT-TIEVDDEAMELNKELIA-KLLELDDVDAVYTD 321 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~i--P~~-~Vel~~e~~~~~~~lid-~Lee~dDV~~VY~N 321 (323)
++.+-|+|.....+.++|.+.. ++.. .-.+ +.+ .+.+--.+++.+..|+. .|..+|.|.++.+.
T Consensus 5 ~v~v~~~~~~~~~~~~~l~~~p-eV~~---~~~vtG~~d~l~~v~~~d~~~l~~~~~~~l~~~~gV~~~~t~ 72 (83)
T 2zbc_A 5 IVLINTDAGGEDEVFERLKSMS-EVTE---VHVVYGVYDIVVKVEADSMDKLKDFVTNTIRKLPKVRSTLTM 72 (83)
T ss_dssp EEEEEESTTCHHHHHHHHTTCT-TEEE---EEECSSSCSEEEEEECSSHHHHHHHHHHTGGGSTTEEEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHhCCC-CeEE---EEEEeccCCEEEEEEECCHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 5678899999999999998642 2321 1111 111 12332233455667775 89999999988764
No 43
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=22.72 E-value=90 Score=25.75 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=23.0
Q ss_pred HHHHHHHHHhccCCccceeEEEEEEEecCCcEEEEEEe
Q 020672 137 DIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVL 174 (323)
Q Consensus 137 d~IErAIkra~g~~~~~~~e~~YEg~GPgGvaiIVE~l 174 (323)
+.|++++..|....+....++.+--++|+||..++=+.
T Consensus 25 ~~l~~~l~~aa~~~gatvl~~~~h~F~P~GvSgvvlla 62 (135)
T 2iii_A 25 EDIRELLEGAVKYANLTKISSHYYQFQPHGATGVVLLA 62 (135)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEECSSSCEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEEcCCCCeEEEEEec
Confidence 34556666555443344455566677899988775443
No 44
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=22.65 E-value=1.9e+02 Score=23.23 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCChHHHHHHHH-HHhcCCCHHHHHHHHH
Q 020672 98 YSRMGKEVISAVKKGGPNPTSNTVLAAVLEK-AKELDVPKDIVERNIK 144 (323)
Q Consensus 98 fsKl~keI~~Avk~GG~DP~~N~~La~aI~k-AK~~nmPKd~IErAIk 144 (323)
+..+...+..|.-..|.|......|..+++. |++.+++.+.+++++.
T Consensus 93 ~~~~~~~l~~a~~~~~~~~~~~~~l~~~~~~~a~~~Gld~~~~~~~~~ 140 (195)
T 3c7m_A 93 FKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAALK 140 (195)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTTTCHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHcCCCHHHHHHHHc
Confidence 5567777877877777777667778888777 8889999999988874
No 45
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=22.65 E-value=26 Score=24.98 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=35.5
Q ss_pred HHHHHHhCCCCeeecccceeecCCccccCHHHHHHHHHHHHHHccCCCcceeeccC
Q 020672 267 ITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322 (323)
Q Consensus 267 V~~~L~~~G~~i~~~~~i~~iP~~~Vel~~e~~~~~~~lid~Lee~dDV~~VY~N~ 322 (323)
..+.+++.|-++.. ++..+|---++|+++.. ++|..+|+|..|.-++
T Consensus 14 ~~~~i~~~gG~i~~--~~~~I~a~~~~lp~~~~-------~~L~~~p~V~yVE~D~ 60 (65)
T 2z30_B 14 NPHEVLGIGGHIVY--QFKLIPAVVVDVPANAV-------GKLKKMPGVEKVEFDH 60 (65)
T ss_dssp CGGGGGGGTCEEEE--ECSSSSEEEEEECGGGH-------HHHHTSTTEEEEEECC
T ss_pred hHHHHHHCCCEEEE--EecCCcEEEEEeCHHHH-------HHHhcCCCceEEecCc
Confidence 44467788988875 57778888899997663 4577999999888664
No 46
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=22.45 E-value=1.1e+02 Score=23.64 Aligned_cols=59 Identities=8% Similarity=0.255 Sum_probs=40.3
Q ss_pred EEEEecCChhhHHHHHHHHHhhcCc----cccCCcceeeeceeeEEEEEeCCCCCHHHHHHHHHHCCC
Q 020672 170 VVEVLTDKITRSVAAVREVVKDCGG----KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGA 233 (323)
Q Consensus 170 IVE~lTDN~nRT~~~vR~~f~K~GG----~l~~~gsV~f~F~~kGvI~v~~~~~d~D~lle~AIEaGA 233 (323)
||-++-||+.-+...|+.++.++|. +|| +.|-=...|+|.+.-+ .+.|++-...=+.|.
T Consensus 9 vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmG----iP~~~~~~~iIsl~v~-~~~d~I~aL~gkLg~ 71 (86)
T 2nzc_A 9 ILTIVVEDREKAYRQVNELLHNFSEDILLRVG----YPVREENMAIIFLVLK-TDNDTIGALSGKLGQ 71 (86)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTGGGEEEEEE----EEEGGGTEEEEEEEEE-ECHHHHHHHHHHHHT
T ss_pred EEEEEEeCchhhHHHHHHHHHhccCEEEEEcC----CCcCcCCceEEEEEEE-CCHHHHHHHHHHhCC
Confidence 4556778899888899999999995 554 3343356778776532 356766555555554
No 47
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=22.32 E-value=44 Score=20.18 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHHHh
Q 020672 114 PNPTSNTVLAAVLEKAKE 131 (323)
Q Consensus 114 ~DP~~N~~La~aI~kAK~ 131 (323)
++|..|.-|.++|.+|--
T Consensus 5 ~e~~~~~gleaiirkalm 22 (26)
T 2ovm_B 5 ADPASNLGLEDIIRKALM 22 (26)
T ss_pred CCCccccCHHHHHHHHHh
Confidence 578889999999998853
No 48
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.17 E-value=90 Score=26.04 Aligned_cols=66 Identities=9% Similarity=0.131 Sum_probs=40.0
Q ss_pred eEEEEeCcccHHHHHHHHHhCCCCeeecccceeecC-CccccCHHHHHHHHHHHHHHccCCCcceeecc
Q 020672 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI-TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321 (323)
Q Consensus 254 ~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~-~~Vel~~e~~~~~~~lid~Lee~dDV~~VY~N 321 (323)
.+.+-++|..+..+.+.|.+.. ++.....+.- +- -.+.+--.+++.+..|++.|..+++|..+.+.
T Consensus 90 ~v~v~~~~~~~~~v~~~l~~~p-eV~~~~~vtG-~~d~l~~v~~~d~~~l~~~l~~l~~~~gV~~~~t~ 156 (171)
T 2e1c_A 90 FILVKVKAGKYSEVASNLAKYP-EIVEVYETTG-DYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTM 156 (171)
T ss_dssp EEEEEECTTCHHHHHHHHHTST-TEEEEEECSS-SSSEEEEEEESSHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred EEEEEECcchHHHHHHHHhcCc-CeEEEEEeeC-CCCEEEEEEECCHHHHHHHHHHHhcCCCcceEEEE
Confidence 4567788999999999998742 2221101110 21 12333223345566778999999999887764
No 49
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=22.09 E-value=64 Score=24.13 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCC-CCCCChHHHHHHHHHHhcCCCHHHHHHHHHHhccC
Q 020672 103 KEVISAVKKGGP-NPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 149 (323)
Q Consensus 103 keI~~Avk~GG~-DP~~N~~La~aI~kAK~~nmPKd~IErAIkra~g~ 149 (323)
++|..+.++.|| ++ .++-+-|++.+||+.+|+++|++-...
T Consensus 13 ~~IL~~L~~~~pg~~------~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 13 QRILKFLEELGEGKA------TTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHHHHHHHCTTCC------BCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCC------cCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 446666666552 22 136677899999999999999987643
No 50
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=21.51 E-value=79 Score=25.95 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=22.5
Q ss_pred ceEEEEeCcccHHHHHHHHHhCCCC
Q 020672 253 RYYKVVSTSDNYTDITTKLREAGIP 277 (323)
Q Consensus 253 ~~~~v~~~p~~l~~V~~~L~~~G~~ 277 (323)
..++.++.|..+..|+++|.+.|+.
T Consensus 14 K~I~AIIr~~k~~~V~~AL~~~G~~ 38 (135)
T 2o66_A 14 YKVEAIVRPWRIQQVSSALLKIGIR 38 (135)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCc
Confidence 5688999999999999999998775
No 51
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=21.39 E-value=1.4e+02 Score=29.41 Aligned_cols=59 Identities=8% Similarity=0.083 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhccCCccceeEEEEEEEe-cCCcEEEEEEecCChhhHHHHHHHH
Q 020672 123 AAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVREV 188 (323)
Q Consensus 123 a~aI~kAK~~nmPKd~IErAIkra~g~~~~~~~e~~YEg~G-PgGvaiIVE~lTDN~nRT~~~vR~~ 188 (323)
..|+.-|...++|.+.|.++|+..++-.. ++|..+ .+|+.+|+|.- -|+.-..+-++.+
T Consensus 348 laA~a~~~~lgi~~~~i~~~L~~~~~~~g------R~e~~~~~~g~~vi~D~a-hnp~~~~a~l~~l 407 (524)
T 3hn7_A 348 LVAIAAAYNIGVSVKTACAALSAFAGIKR------RMELIGDVNDILVFDDFA-HHPTAITTTLDGA 407 (524)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTCCCBTT------SSEEEEEETTEEEEEECC-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCc------eEEEEEecCCcEEEEECC-CCHHHHHHHHHHH
Confidence 45677889999999999999987664322 333333 47899999995 5666555544443
No 52
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=21.32 E-value=1.6e+02 Score=28.53 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhccCCccceeEEEEEEEe-cCCcEEEEEEecCChhhHHHHHHHH
Q 020672 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVREV 188 (323)
Q Consensus 122 La~aI~kAK~~nmPKd~IErAIkra~g~~~~~~~e~~YEg~G-PgGvaiIVE~lTDN~nRT~~~vR~~ 188 (323)
+..||.-|...++|.+.|.++|+...+-.. ++|... .+|+.+|+| .--|+.-...-++.+
T Consensus 311 alaAia~~~~lGi~~~~i~~~L~~~~~~~g------R~e~v~~~~~~~vi~D-yahnP~s~~a~l~~l 371 (498)
T 1e8c_A 311 LLLALATLLALGYPLADLLKTAARLQPVCG------RMEVFTAPGKPTVVVD-YAHTPDALEKALQAA 371 (498)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHGGGCCCCTT------SSEEECCTTSCEEEEE-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------ceEEEEcCCCCEEEEE-CCCCHHHHHHHHHHH
Confidence 356777888899999999999987654322 444444 357899999 777776555555444
No 53
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=20.86 E-value=1e+02 Score=24.31 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHhccC
Q 020672 97 LYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 149 (323)
Q Consensus 97 lfsKl~keI~~Avk~GG~DP~~N~~La~aI~kAK~~nmPKd~IErAIkra~g~ 149 (323)
++..+...|...+..|.--| ..+|-..-+-|+..+|+..+|.+|+++-...
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~--g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~ 64 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKG--EDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCT--TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCC--CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 55677888888888887544 3456556677899999999999999986543
No 54
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=20.13 E-value=1.2e+02 Score=23.59 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCeeecccceeecC-CccccC-HHHHHHHHHHHHHHccCCCcceeecc
Q 020672 265 TDITTKLREAGIPFETDNGSELLPI-TTIEVD-DEAMELNKELIAKLLELDDVDAVYTD 321 (323)
Q Consensus 265 ~~V~~~L~~~G~~i~~~~~i~~iP~-~~Vel~-~e~~~~~~~lid~Lee~dDV~~VY~N 321 (323)
..+.+.|++.|++++. -|- |.+|=+ ++-++.+.++.+.+.+ ++.+||++
T Consensus 27 a~~i~~l~~sGl~y~~------~pm~T~IEGe~devm~vv~~~~e~~~~--g~~RV~~~ 77 (100)
T 2epi_A 27 KKAIEVFKKYDLKVET------NAMGTVLEGDLDEILKAFKEAHSTVLN--DVDRVVSS 77 (100)
T ss_dssp HHHHHHHTTSSCEEEE------ETTEEEEEEEHHHHHHHHHHHHHHHHT--TSSEEEEE
T ss_pred HHHHHHHHHcCCCeEe------cCCccEEEcCHHHHHHHHHHHHHHHHc--CCCEEEEE
Confidence 4566667766766543 265 777755 3457888888888887 88888875
Done!