RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020672
(323 letters)
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston
bacterial structural genomics initiative, BSGI,
structural genomics; 2.20A {Escherichia coli} SCOP:
e.39.1.1
Length = 249
Score = 199 bits (509), Expect = 4e-63
Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 15/241 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ RK AQDAK+ K+++++ +E+++A K GG +P +N L A ++KA ++ +D +
Sbjct: 11 ANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLN 70
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R +YE YG GG +I++E L+D R+VA VR CGG +
Sbjct: 71 RAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTD 130
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + V I F D+D +++ AL+AGAEDV+ +D V +
Sbjct: 131 GSVAYLFSKKGV--ISFEKGDEDTIMEAALEAGAEDVVT---YDDG--------AIDVYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + L AG+ + ++P T ++D E LI L + DDV VY
Sbjct: 178 AWEEMGKVRDALEAAGLKAD-SAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVY 236
Query: 320 T 320
Sbjct: 237 H 237
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A
{Coxiella burnetii}
Length = 247
Score = 199 bits (508), Expect = 5e-63
Identities = 73/241 (30%), Positives = 127/241 (52%), Gaps = 14/241 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I K QDAK+ K+++++ +E+ A + GG + SN L AV++KA ++PKD +
Sbjct: 11 ANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTIT 70
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + +E YE YG GV+++V+ LTD R+VA VR C G +
Sbjct: 71 RAIKRGAGSGAGDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTE 130
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F++ ++ ++D++++++IAL+ GAEDV N+D V +
Sbjct: 131 GSVAYLFKQRGLITFP-PNSDEEKIMEIALEVGAEDVTT---NDDG--------SIDVTT 178
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ I ++ A + +L T + +D ++ E L L +LDDV VY
Sbjct: 179 LPEDFEKIRNAMKAADLNPS-HAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVY 237
Query: 320 T 320
+
Sbjct: 238 S 238
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; 1.72A {Aquifex aeolicus}
SCOP: e.39.1.1
Length = 249
Score = 195 bits (499), Expect = 1e-61
Identities = 74/242 (30%), Positives = 128/242 (52%), Gaps = 15/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
++I +K DA++ KL+S++ +E+I A + GGPNP N L +E+AK+ ++P + +E
Sbjct: 8 AQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + E E F E +YE Y GGV+++V TD R+ + VR V GG +
Sbjct: 68 RAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGAS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R + + + +++LL+ A++ GAEDV E+ + + +
Sbjct: 128 GCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQ--------PGEE----VHIIYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAV 318
+ ++ L + G+P E PI+T++++D E + +L+ L ELDDV V
Sbjct: 176 VPEELYEVKENLEKLGVPIE-KAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQV 234
Query: 319 YT 320
Sbjct: 235 IA 236
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Helicobacter pylori} SCOP:
e.39.1.1
Length = 240
Score = 194 bits (496), Expect = 3e-61
Identities = 69/254 (27%), Positives = 116/254 (45%), Gaps = 26/254 (10%)
Query: 76 MGRRSSKIAGRKGAQDA---KKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKEL 132
MGR R+ A++ K +K++ ++ K + A K GG P +N L + AK
Sbjct: 1 MGR---AFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQ 57
Query: 133 DVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVV-KD 191
++PKD ++ IKRAS K E YE GV I++E +TD TR++A ++ K
Sbjct: 58 NMPKDNIDAAIKRASSKE-GNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKT 116
Query: 192 CGGKMADPGSVMFKFRRARVVNIKFTDADK-----DQLLDIALDAGAEDVIEPPVNEDDT 246
G + GS+ F F R V + + + L +D G E++ E
Sbjct: 117 QGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEE-------- 168
Query: 247 DEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELI 306
ED + +++ + +P + + T IE++DE MEL ++L+
Sbjct: 169 VED----KIIIRGDYNSFKLLNEGFESLKLPIL-KASLQRIATTPIELNDEQMELTEKLL 223
Query: 307 AKLLELDDVDAVYT 320
++ + DDV A+YT
Sbjct: 224 DRIEDDDDVVALYT 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-04
Identities = 41/343 (11%), Positives = 95/343 (27%), Gaps = 109/343 (31%)
Query: 40 RNLFSSASSISSWIPLYEVKHC----NFQVRTIRTFAPVCMGRRSSKIAGR--KGAQDAK 93
+++ S E+ H + T+R F + + ++ + +
Sbjct: 43 KSILSKE----------EIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQKFVEEVLRIN 90
Query: 94 KAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA 153
L S + E P+ T + + ++ + + + + N+ R +
Sbjct: 91 YKFLMSPIKTEQRQ--------PSMMTRMY-IEQRDRLYNDNQVFAKYNVSR--LQPYLK 139
Query: 154 FIEKVYE--------VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
+ + E + G G K + A+ +V + + +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSG--------K---TWVAL-DVCLSYKVQCKMDFKIFW- 186
Query: 206 FRRARVVNIKFTDADKDQL---------LDIALDAGAEDVIEPPVNEDDT-DEDR---AE 252
+N+K ++ + L +D + ++ + E R
Sbjct: 187 ------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 253 RYYK------------------------VVSTSD-NYTDI----TTK---LREAGIPFET 280
+ Y+ +++T TD TT L +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 281 DNGSELLP-ITTIEVDD---EAMELNK---ELIAKLLELDDVD 316
D LL D E + N +IA+ + D +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLA 342
Score = 34.8 bits (79), Expect = 0.039
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 26/138 (18%)
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTD------EDRAER-Y 254
++ F A V N D D I + +I T + E
Sbjct: 21 ILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 255 YKVVSTS--DNYTDITTKLR-EAGIP------FETD-----NGSELLPITTIEVDDEAME 300
K V NY + + ++ E P + N +++ + ++
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 301 LNKELIAKLLELDDVDAV 318
L + LLEL V
Sbjct: 140 LRQ----ALLELRPAKNV 153
Score = 31.7 bits (71), Expect = 0.36
Identities = 50/415 (12%), Positives = 116/415 (27%), Gaps = 115/415 (27%)
Query: 1 MGSHSSTRAVGAILHRISNGVSSKWSPNSFALS---------KHGLLSRNLFSSASSISS 51
+ + +S V +L ++ + W+ S S + L R L S +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENC 246
Query: 52 WIPLYEVKHCNFQVRTIRTFAPVC---MGRRSSKIAGRKGAQDAKKAK-------LYSRM 101
+ L V++ + F C + R ++ A L
Sbjct: 247 LLVLLNVQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 102 GKEVISA------------VKKGGPNPTSNTVLAAVLEKAKE-----LDVPKDIVERNIK 144
K ++ V NP +++A + V D + I+
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 145 RA-----SEKGQEAF-----------I-EKVYEVYGYGGVSIVVEVLTDKITRSVAAVRE 187
+ + ++ F I + + + + V V+ +K+ + +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK- 419
Query: 188 VVKDCGGKMADPG---SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED 244
+ ++ P + K ++ D D ++D+I P +
Sbjct: 420 --QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK---TFD--SDDLIPPYL--- 469
Query: 245 DTDE----------DRAERYYKVVSTSDNYTD---ITTKLREAGIPFETDNGS-ELLP-- 288
D+ E ++ + D + K+R + L
Sbjct: 470 --DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 289 ------ITTIEVDDEAM---------ELNKELI----AKLLEL---DDVDAVYTD 321
I + E + ++ + LI LL + + +A++ +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.081
Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 34/140 (24%)
Query: 37 LLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTF--APVCMGRRSSKIAGRK--GAQDA 92
L ++ + A+ + VK I+ + A + R K + A
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVK----TKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 93 KKAKLYSRMGKEVISAVKKG-GPNPTSNTVLAAVLEKAKEL----DVPKDIVERNIKRAS 147
A+L + G G G ++ +EL +V IK ++
Sbjct: 152 GNAQLVAIFG---------GQG---NTDDYF-------EELRDLYQTYHVLVGDLIKFSA 192
Query: 148 EKGQE--AFIEKVYEVYGYG 165
E E +V+ G
Sbjct: 193 ETLSELIRTTLDAEKVFTQG 212
>1w25_A Stalked-cell differentiation controlling protein; two-component
system, ggdef domain, cyclic dinucleotide, cyclic-digmp;
HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1
c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Length = 459
Score = 32.5 bits (74), Expect = 0.21
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 3/109 (2%)
Query: 214 IKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLRE 273
+ T D L++GA D + P+++ R + D R
Sbjct: 79 VLITALDGRGDRIQGLESGASDFLTKPIDDVMLFA-RVRSLTRFKLVIDELRQREASGRR 137
Query: 274 AGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
G+ + L + VDD + +A L ++ + +D
Sbjct: 138 MGVIAGAAARLDGLGGRVLIVDDNER--QAQRVAAELGVEHRPVIESDP 184
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 31.1 bits (71), Expect = 0.41
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
R +N+ D +L D GAE VI + + R E
Sbjct: 189 AALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI------TEEELRRPEM 231
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 30.4 bits (69), Expect = 0.66
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
K +++ + D+++ + GA VI + + E +
Sbjct: 189 KLLNFNSISVIRDRPNLDEVVASLKELGATQVI------TEDQNNSREFGPTI 235
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family
transcriptional regulator streptomyces, structur
genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Length = 211
Score = 28.9 bits (65), Expect = 1.7
Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 5/44 (11%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTD-----EDRAERYYKV 257
K LL A P+ E D + +
Sbjct: 67 RTKRDLLTAMAQAAMAPHAAEPLPEPGEDWHGWFLRNTRSFRRT 110
>2xpw_A Tetracycline repressor protein class D; transcription,
transcription regulator, helix-turn-helix, ME
coordination; HET: OTC MES; 1.44A {Escherichia coli}
PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A*
2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A*
2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A
...
Length = 207
Score = 28.2 bits (63), Expect = 2.7
Identities = 5/44 (11%), Positives = 11/44 (25%), Gaps = 5/44 (11%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTD-----EDRAERYYKV 257
+K LLD + + + A + +
Sbjct: 45 KNKRALLDALAVEILARHHDYSLPAAGESWQSFLRNNAMSFRRA 88
>3bqy_A Putative TETR family transcriptional regulator; structural
genomics, strept coelicolor, PSI-2, protein structure
initiative; 1.95A {Streptomyces coelicolor A3}
Length = 209
Score = 28.2 bits (63), Expect = 3.3
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTD-----EDRAERYYKVV 258
A K LL + + V + D D A +
Sbjct: 44 AAKQDLLTAMAEHMVDGVADAAGATGDGDWSERTARLARALRAAL 88
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix,
structural genomics, PSI, protein structur initiative;
2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Length = 213
Score = 27.8 bits (62), Expect = 4.0
Identities = 4/43 (9%), Positives = 11/43 (25%), Gaps = 3/43 (6%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDED---RAERYYKVV 258
+ ++++ ++ DE A Y
Sbjct: 51 KGRAAVVELVRHRVVREIDGSAFERLPWDEAFSEWARSYRAAF 93
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293,
TET streptomyces coelicolor A3(2), PSI-2; 1.70A
{Streptomyces coelicolor}
Length = 241
Score = 27.9 bits (62), Expect = 4.0
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDD 245
+K +LL D ++ E D
Sbjct: 71 RNKTELLRAVADRILLSAMDGYRPEGD 97
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5-
helix bundle domain, raction intermediate; HET: ARG;
1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Length = 410
Score = 27.9 bits (61), Expect = 5.0
Identities = 17/163 (10%), Positives = 39/163 (23%), Gaps = 26/163 (15%)
Query: 147 SEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM--- 203
SE+ + + + ++ + + + D M D +
Sbjct: 230 SERTDLQTVTLLAKNIVANKECEFKRIVAINVPKWTNLMH---LDTWLTMLDKDKFLYSP 286
Query: 204 --------FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ + + L + + + P+ + + ER
Sbjct: 287 IANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQSIINKKPVLIPIAGEGASQMEIERET 346
Query: 256 ------------KVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
VV L AGI +G++L
Sbjct: 347 HFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQL 389
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 27.5 bits (61), Expect = 5.8
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 174 LTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL---- 229
LT + ++ R ++ + K S + +F RAR +I + + ++
Sbjct: 35 LTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDIN--AS-VEMFVE-TERWRE 90
Query: 230 DAGAEDVIE---PPVNEDDTDEDRAERYYKVV 258
+ GA +IE +D + + + Y
Sbjct: 91 EYGANTIIEDYENNKEAEDKERIKLAKMYPQY 122
>2opt_A Actii protein; helical protein, TETR family, APO-protein,
transcriptional R transcription; 2.05A {Streptomyces
coelicolor} PDB: 3b6a_A* 3b6c_A*
Length = 234
Score = 27.1 bits (60), Expect = 6.9
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDED---RAERYYKVV 258
++D+LLD+ D +V P E ++
Sbjct: 48 GNRDELLDLVFDIVLTEVEVPEPEPGRWAEQVKEMCRSLRRMF 90
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN;
2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Length = 206
Score = 26.8 bits (59), Expect = 7.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 99 SRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV 158
S M K++ + G N + VL V E+A +L + +V AS G+ A ++
Sbjct: 19 SHMEKKICYFEEPGKEN--TERVLELVGERADQLGIRNFVV------ASVSGETA--LRL 68
Query: 159 YEVYGYGGVSI 169
E+ VS+
Sbjct: 69 SEMVEGNIVSV 79
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P
structure initiative; 2.40A {Enterococcus faecalis}
SCOP: a.4.1.9 a.121.1.1
Length = 220
Score = 27.1 bits (60), Expect = 7.8
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNED--DTDEDRAERYYKV 257
+K LL +A E EP + + E YY +
Sbjct: 48 KNKQALLQSMAEAIEEHFQEPALCGEWYSDLLAFMENYYDL 88
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure
initiativ midwest center for structural genomics, MCSG;
2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Length = 243
Score = 27.1 bits (60), Expect = 8.0
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
A+ +L LDA +V ++ ++
Sbjct: 61 ANTAELHAAVLDALLGEVDLTGAGAEEDWREQLRAV 96
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3
receptor suppressor domain, calcium channe trefoil fold,
membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A
Length = 246
Score = 26.7 bits (58), Expect = 8.8
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 22 SSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSS 81
++ S N F +S GL+ + P + + C F++ + ++ +++
Sbjct: 33 YAEGSTNGF-ISTLGLVDDRCVVQPEAGDLNNPPKKFRDCLFKLCPMNRYSAQKQFWKAA 91
Query: 82 KIAGRKGAQDAKKAKLYSRMGKE 104
K KL+ E
Sbjct: 92 KPGANSTTDAVLLNKLHHAADLE 114
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 27.1 bits (59), Expect = 9.6
Identities = 22/153 (14%), Positives = 39/153 (25%), Gaps = 10/153 (6%)
Query: 130 KELDVPKDIVERNIKRASEKGQEA---FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVR 186
K +VP DI I + S + F + YG V L D R
Sbjct: 516 KNTEVPVDI----IIQPSAASKHKMFPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSR 571
Query: 187 EVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDT 246
+ G K P + K + +G E ++
Sbjct: 572 KRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRASRYSGFSGTGEAENFDNLD 631
Query: 247 DEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 279
+ K ++ ++ K + +
Sbjct: 632 YLKIDKTLSKRTIST---VNVQLKCSVVILNLQ 661
>2hxo_A Putative TETR-family transcriptional regulator; TETR
transcriptional regulator, structural genomics, PSI-2,
structure initiative; 2.40A {Streptomyces coelicolor}
Length = 237
Score = 26.7 bits (59), Expect = 10.0
Identities = 7/45 (15%), Positives = 10/45 (22%), Gaps = 5/45 (11%)
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTD-----EDRAERYYKVV 258
K +LL A DA + A +
Sbjct: 58 TGKAELLGAATDAVVTAAVTAGPTGAADSPQDAVRAVALGLWDAT 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,965,103
Number of extensions: 318286
Number of successful extensions: 960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 57
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.6 bits)