RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020672
(323 letters)
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 172 bits (437), Expect = 4e-53
Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 15/241 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ RK AQDAK+ K+++++ +E+++A K GG +P +N L A ++KA ++ +D +
Sbjct: 6 ANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLN 65
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R +A +YE YG GG +I++E L+D R+VA VR CGG +
Sbjct: 66 RAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTD 125
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + ++ I F D+D +++ AL+AGA V D V +
Sbjct: 126 GSV--AYLFSKKGVISFEKGDEDTIMEAALEAGA-----EDVVTYDDG------AIDVYT 172
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + L AG+ ++ ++P T ++D E LI L + DDV VY
Sbjct: 173 AWEEMGKVRDALEAAGLKADSA-EVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVY 231
Query: 320 T 320
Sbjct: 232 H 232
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus
[TaxId: 63363]}
Length = 243
Score = 151 bits (382), Expect = 7e-45
Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 15/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
++I +K DA++ KL+S++ +E+I A + GGPNP N L +E+AK+ ++P + +E
Sbjct: 4 AQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIE 63
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + + + E+V YE Y GGV+++V TD R+ + VR V GG +
Sbjct: 64 RAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGAS 123
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R + + + +++LL+ A++ D E + + +
Sbjct: 124 GCVSYLFERKGYIEVPAKEVSEEELLEKAIEV------------GAEDVQPGEEVHIIYT 171
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAV 318
+ ++ L + G+P E PI+T++++D E + +L+ L ELDDV V
Sbjct: 172 VPEELYEVKENLEKLGVPIEKA-QITWKPISTVQINDEETAQKVIKLLNALEELDDVQQV 230
Query: 319 YT 320
Sbjct: 231 IA 232
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter
pylori [TaxId: 210]}
Length = 220
Score = 128 bits (323), Expect = 2e-36
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 12/227 (5%)
Query: 96 KLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI 155
K++ ++ K + A K GG P +N L + AK ++PKD ++ IKRAS K
Sbjct: 1 KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLS 59
Query: 156 EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDC-GGKMADPGSVMFKFRRARVVNI 214
E YE GV I++E +TD TR++A ++ G + GS+ F F R V
Sbjct: 60 EITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFEC 119
Query: 215 KFTDADKDQLLDIALDAGAEDV-IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLRE 273
+ + +L L+ D +E +D R + + +
Sbjct: 120 LKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNS--------FKLLNEGFES 171
Query: 274 AGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+P + + T IE++DE MEL ++L+ ++ + DDV A+YT
Sbjct: 172 LKLPILKA-SLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYT 217
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 30.1 bits (67), Expect = 0.32
Identities = 17/163 (10%), Positives = 39/163 (23%), Gaps = 26/163 (15%)
Query: 147 SEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM--- 203
SE+ + + + ++ + + + D M D +
Sbjct: 229 SERTDLQTVTLLAKNIVANKECEFKRIVAINVPKWTNLMH---LDTWLTMLDKDKFLYSP 285
Query: 204 --------FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ + + L + + + P+ + + ER
Sbjct: 286 IANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQSIINKKPVLIPIAGEGASQMEIERET 345
Query: 256 ------------KVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
VV L AGI +G++L
Sbjct: 346 HFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQL 388
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 28.8 bits (63), Expect = 0.88
Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 241 VNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAME 300
++E+ E+ + +++ ++ + G + EV E
Sbjct: 335 IDEERITENLQKALPYILTE-----FHMNRMIKEGASRA--EAYKKAK----EVKALTFE 383
Query: 301 LNKELIAKLLE 311
K + +L+E
Sbjct: 384 YQKWPVERLIE 394
>d1hbnb1 a.89.1.1 (B:189-443) Beta chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 255
Score = 27.5 bits (61), Expect = 2.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 105 VISAVKKGGPNPTSNTVLAAVLEKAKELDVPK 136
V VK G T +V+A ++E+A E V K
Sbjct: 64 VFDLVKANGKEGTVGSVIADLVERALEDGVIK 95
>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 87
Score = 25.7 bits (56), Expect = 2.6
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 181 SVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP 240
+V V E + + + V ++ D Q L L GA + PP
Sbjct: 24 TVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83
Query: 241 V 241
V
Sbjct: 84 V 84
>d1e6yb1 a.89.1.1 (B:2186-2433) Beta chain {Archaeon Methanosarcina
barkeri [TaxId: 2208]}
Length = 248
Score = 27.1 bits (60), Expect = 2.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 105 VISAVKKGGPNPTSNTVLAAVLEKAKELDVPK 136
+ VK+ G + T TV+ +V+ +A E +
Sbjct: 64 LYDIVKENGKDGTIGTVIESVVRRAIEAGIIS 95
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 27.4 bits (60), Expect = 3.0
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 135 PKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIV---VEVLTDKITRSVAAVREVVKD 191
P ++E + E + +E++ +VY GV + +E++ ++ + V V D
Sbjct: 1331 PHQLLE---AKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYV-----EVTD 1382
Query: 192 CGGKMADPGSVM--FKFRRAR 210
G G V+ +
Sbjct: 1383 PGDSRLLEGQVLEKWDVEALN 1403
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 26.7 bits (58), Expect = 3.0
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 100 RMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
RMG+++I A L A LE+ + D E
Sbjct: 15 RMGRQLIQAALA-----LEGVQLGAALEREGSSLLGSDAGE 50
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 26.8 bits (58), Expect = 3.6
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 116 PTSNTVLAAVLEKAKELDVPKDIV 139
++ + +A ++ A+EL + V
Sbjct: 306 GSAGSTVAVAVKAAQELQEGQRCV 329
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 26.8 bits (58), Expect = 3.7
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 218 DADKDQLLDIALDAGAEDVIEPPVNEDDTDE--DRAERYYKVVSTSDNYTD 266
D+D ++ A DAG ++ N ++ + A +Y ST+ +
Sbjct: 14 AKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPH 64
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 26.7 bits (58), Expect = 5.1
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 195 KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDA-GAEDVIEPPVNEDDTDEDRAER 253
++ ++ L++ ++ G + + + +R +
Sbjct: 291 EVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQW 350
Query: 254 YY---------KVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
VV D T T LR+AG+ T + SEL
Sbjct: 351 DDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASEL 392
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 25.8 bits (55), Expect = 6.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 125 VLEKAKELDVPKDIVER 141
V + EL +P D++ R
Sbjct: 177 VRKIGLELGLPYDMLYR 193
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 134
Score = 25.3 bits (55), Expect = 7.2
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 207 RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDD 245
R R + + + + + G + V+ PV+ D+
Sbjct: 80 RHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDN 118
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 25.7 bits (55), Expect = 7.9
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 116 PTSNTVLAAVLEKAKELDVPKDIV 139
+S ++ A L+ A+EL K +
Sbjct: 262 MSSGGIVWAALQVARELGPGKRVA 285
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 25.1 bits (54), Expect = 9.3
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 98 YSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
++G ++ AV + L+A L+ L + D
Sbjct: 8 KGKVGATMVRAVAA-----ADDLTLSAELDAGDPLSLLTD 42
>d2guja1 b.106.1.3 (A:5-143) Phage-like element PBSX protein XkdM
{Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 24.7 bits (54), Expect = 9.8
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 55 LYEVKHCNFQVRTIRTFAPVCMGRR-SSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKG 112
+ +K V ++ + R K G G A K+ S+ ++ VKKG
Sbjct: 19 MAHIKTFEANVEKNKSEVNIMGRRMTGHKTTGANGTGTATFYKVTSKFVLLMMDYVKKG 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,153,760
Number of extensions: 54597
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 30
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)