Query 020673
Match_columns 323
No_of_seqs 280 out of 1784
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 5.3E-20 1.2E-24 173.7 9.3 81 209-318 203-284 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 8E-16 1.7E-20 104.2 2.3 43 266-308 2-44 (44)
3 COG5540 RING-finger-containing 99.4 2.3E-13 5E-18 124.7 4.0 52 262-313 321-373 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.3 6.2E-13 1.3E-17 99.8 3.9 45 264-308 19-73 (73)
5 PHA02929 N1R/p28-like protein; 99.3 1.3E-12 2.8E-17 118.7 5.5 50 263-312 173-227 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.3 3.2E-12 6.9E-17 120.1 3.7 57 257-313 280-346 (491)
7 PLN03208 E3 ubiquitin-protein 99.1 1.5E-10 3.4E-15 101.4 5.0 52 260-314 14-81 (193)
8 cd00162 RING RING-finger (Real 99.0 2.9E-10 6.2E-15 75.8 3.5 44 266-311 1-45 (45)
9 KOG0317 Predicted E3 ubiquitin 99.0 3.2E-10 7E-15 104.0 4.5 54 259-315 234-287 (293)
10 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.8E-10 6E-15 79.0 2.6 47 263-312 1-48 (50)
11 KOG0823 Predicted E3 ubiquitin 98.9 9.2E-10 2E-14 98.3 5.1 51 261-314 44-97 (230)
12 KOG0802 E3 ubiquitin ligase [P 98.9 3.4E-10 7.4E-15 115.3 2.5 59 258-316 285-345 (543)
13 PF12861 zf-Apc11: Anaphase-pr 98.9 9.5E-10 2.1E-14 83.9 3.6 51 263-313 20-83 (85)
14 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.1E-09 2.3E-14 72.1 2.8 39 267-307 1-39 (39)
15 PF14634 zf-RING_5: zinc-RING 98.7 8.5E-09 1.8E-13 69.6 3.0 44 266-309 1-44 (44)
16 PHA02926 zinc finger-like prot 98.7 7.1E-09 1.5E-13 92.1 3.2 50 263-312 169-230 (242)
17 smart00184 RING Ring finger. E 98.7 1.1E-08 2.4E-13 65.6 3.3 38 267-307 1-39 (39)
18 PF00097 zf-C3HC4: Zinc finger 98.7 8E-09 1.7E-13 68.4 2.0 39 267-307 1-41 (41)
19 KOG1734 Predicted RING-contain 98.6 9.1E-09 2E-13 93.4 1.0 53 262-314 222-283 (328)
20 KOG0320 Predicted E3 ubiquitin 98.6 2.1E-08 4.6E-13 86.1 2.5 50 264-314 131-180 (187)
21 smart00504 Ubox Modified RING 98.6 4.9E-08 1.1E-12 70.5 4.1 46 265-313 2-47 (63)
22 PF15227 zf-C3HC4_4: zinc fing 98.6 3.3E-08 7.1E-13 66.1 2.5 38 267-307 1-42 (42)
23 COG5194 APC11 Component of SCF 98.6 4.2E-08 9E-13 73.2 3.3 49 265-313 21-82 (88)
24 smart00744 RINGv The RING-vari 98.6 4.3E-08 9.3E-13 67.8 3.1 42 266-308 1-49 (49)
25 KOG0828 Predicted E3 ubiquitin 98.5 1.6E-07 3.6E-12 91.5 6.2 49 265-313 572-635 (636)
26 TIGR00599 rad18 DNA repair pro 98.4 1.3E-07 2.7E-12 92.2 3.2 50 262-314 24-73 (397)
27 KOG1493 Anaphase-promoting com 98.4 5.2E-08 1.1E-12 72.1 0.3 49 264-312 20-81 (84)
28 KOG2930 SCF ubiquitin ligase, 98.4 1.6E-07 3.5E-12 73.5 1.6 48 264-311 46-107 (114)
29 PF13445 zf-RING_UBOX: RING-ty 98.2 1.4E-06 3E-11 58.5 2.6 38 267-305 1-43 (43)
30 KOG0804 Cytoplasmic Zn-finger 98.1 9.3E-07 2E-11 85.6 2.0 50 261-312 172-222 (493)
31 COG5574 PEX10 RING-finger-cont 98.1 1.2E-06 2.7E-11 79.7 2.3 51 262-315 213-265 (271)
32 COG5219 Uncharacterized conser 98.0 6.6E-07 1.4E-11 93.0 -1.7 49 262-312 1467-1523(1525)
33 TIGR00570 cdk7 CDK-activating 98.0 5.8E-06 1.3E-10 77.7 3.6 53 263-315 2-57 (309)
34 PF04564 U-box: U-box domain; 97.9 5.2E-06 1.1E-10 62.2 2.0 49 263-314 3-52 (73)
35 KOG0827 Predicted E3 ubiquitin 97.9 4.2E-06 9.2E-11 79.8 1.9 45 264-308 4-52 (465)
36 PF11793 FANCL_C: FANCL C-term 97.9 3.4E-06 7.3E-11 62.8 0.4 49 265-313 3-67 (70)
37 KOG4265 Predicted E3 ubiquitin 97.8 2.1E-05 4.5E-10 74.7 4.0 52 262-316 288-340 (349)
38 KOG2164 Predicted E3 ubiquitin 97.7 1.8E-05 3.9E-10 78.2 2.9 48 264-314 186-238 (513)
39 KOG2177 Predicted E3 ubiquitin 97.7 1.2E-05 2.5E-10 73.9 1.5 45 262-309 11-55 (386)
40 KOG0287 Postreplication repair 97.7 1.2E-05 2.6E-10 75.5 1.5 48 265-315 24-71 (442)
41 KOG4445 Uncharacterized conser 97.6 1.4E-05 3E-10 74.0 0.6 52 265-316 116-190 (368)
42 KOG0825 PHD Zn-finger protein 97.6 9.9E-06 2.1E-10 83.1 -0.5 50 264-313 123-172 (1134)
43 COG5432 RAD18 RING-finger-cont 97.5 4.5E-05 9.7E-10 70.4 2.3 46 265-313 26-71 (391)
44 KOG1039 Predicted E3 ubiquitin 97.5 4E-05 8.7E-10 73.5 2.0 52 262-313 159-222 (344)
45 KOG1645 RING-finger-containing 97.5 6.5E-05 1.4E-09 72.3 3.2 47 264-310 4-54 (463)
46 KOG0824 Predicted E3 ubiquitin 97.4 8.7E-05 1.9E-09 68.9 2.3 49 263-314 6-55 (324)
47 KOG1941 Acetylcholine receptor 97.2 0.0001 2.2E-09 70.6 0.7 46 264-309 365-413 (518)
48 KOG0311 Predicted E3 ubiquitin 97.2 5.4E-05 1.2E-09 71.7 -1.3 51 263-316 42-94 (381)
49 KOG4172 Predicted E3 ubiquitin 97.1 0.00012 2.5E-09 51.0 -0.2 45 265-312 8-54 (62)
50 KOG4159 Predicted E3 ubiquitin 97.0 0.00053 1.1E-08 67.1 3.0 51 262-315 82-132 (398)
51 PHA02862 5L protein; Provision 96.9 0.00062 1.3E-08 56.9 2.5 45 265-313 3-54 (156)
52 PF14835 zf-RING_6: zf-RING of 96.9 0.00028 6.1E-09 51.0 0.3 48 265-316 8-55 (65)
53 PF05883 Baculo_RING: Baculovi 96.8 0.0006 1.3E-08 56.6 1.7 36 265-300 27-68 (134)
54 PF12906 RINGv: RING-variant d 96.7 0.00086 1.9E-08 45.8 1.8 40 267-307 1-47 (47)
55 KOG0801 Predicted E3 ubiquitin 96.6 0.00066 1.4E-08 57.8 0.7 37 255-291 168-204 (205)
56 KOG1785 Tyrosine kinase negati 96.6 0.001 2.2E-08 64.1 1.6 47 265-314 370-418 (563)
57 KOG0297 TNF receptor-associate 96.5 0.0015 3.3E-08 64.2 2.3 54 262-317 19-72 (391)
58 PF11789 zf-Nse: Zinc-finger o 96.4 0.0015 3.2E-08 46.5 1.5 40 265-306 12-53 (57)
59 KOG3970 Predicted E3 ubiquitin 96.4 0.0027 5.8E-08 56.9 3.3 54 263-317 49-110 (299)
60 KOG1428 Inhibitor of type V ad 96.4 0.0022 4.7E-08 70.1 2.9 53 261-313 3483-3545(3738)
61 PHA02825 LAP/PHD finger-like p 96.2 0.0038 8.2E-08 53.2 3.0 49 261-313 5-60 (162)
62 KOG1002 Nucleotide excision re 95.4 0.0062 1.3E-07 60.7 1.2 57 262-321 534-595 (791)
63 KOG0978 E3 ubiquitin ligase in 95.4 0.005 1.1E-07 63.9 0.5 48 265-315 644-692 (698)
64 KOG1814 Predicted E3 ubiquitin 95.3 0.0089 1.9E-07 58.0 1.9 46 265-310 185-238 (445)
65 PF10367 Vps39_2: Vacuolar sor 95.3 0.0069 1.5E-07 47.9 0.9 33 262-295 76-108 (109)
66 COG5152 Uncharacterized conser 95.1 0.0079 1.7E-07 53.0 0.7 44 265-311 197-240 (259)
67 PF14570 zf-RING_4: RING/Ubox 95.0 0.013 2.8E-07 40.1 1.5 44 267-311 1-47 (48)
68 KOG1952 Transcription factor N 94.9 0.012 2.7E-07 61.6 1.6 52 260-311 187-246 (950)
69 PHA03096 p28-like protein; Pro 94.8 0.014 3.1E-07 54.8 1.7 44 265-308 179-230 (284)
70 KOG2660 Locus-specific chromos 94.3 0.013 2.7E-07 55.5 0.1 49 264-314 15-63 (331)
71 KOG1813 Predicted E3 ubiquitin 94.3 0.015 3.3E-07 54.2 0.6 47 265-314 242-288 (313)
72 KOG0827 Predicted E3 ubiquitin 94.2 0.003 6.5E-08 60.7 -4.2 51 265-315 197-248 (465)
73 KOG4692 Predicted E3 ubiquitin 93.8 0.035 7.7E-07 53.0 2.1 50 260-312 418-467 (489)
74 KOG2879 Predicted E3 ubiquitin 93.8 0.068 1.5E-06 49.5 3.9 50 261-312 236-287 (298)
75 KOG1609 Protein involved in mR 93.8 0.048 1E-06 51.4 3.0 50 264-313 78-135 (323)
76 PF07800 DUF1644: Protein of u 93.3 0.085 1.8E-06 45.1 3.4 37 263-299 1-47 (162)
77 KOG3039 Uncharacterized conser 93.2 0.1 2.2E-06 47.6 3.9 53 263-315 220-273 (303)
78 KOG1571 Predicted E3 ubiquitin 93.0 0.079 1.7E-06 50.8 3.0 45 263-313 304-348 (355)
79 COG5222 Uncharacterized conser 92.5 0.059 1.3E-06 50.4 1.4 45 265-312 275-322 (427)
80 KOG0826 Predicted E3 ubiquitin 92.2 0.21 4.5E-06 47.4 4.6 50 259-311 295-345 (357)
81 PF03854 zf-P11: P-11 zinc fin 92.2 0.048 1E-06 37.1 0.3 33 282-314 15-48 (50)
82 KOG3268 Predicted E3 ubiquitin 91.5 0.12 2.7E-06 44.9 2.1 35 282-316 187-232 (234)
83 KOG1940 Zn-finger protein [Gen 91.3 0.099 2.2E-06 48.8 1.5 45 265-309 159-204 (276)
84 KOG4275 Predicted E3 ubiquitin 91.1 0.054 1.2E-06 50.5 -0.5 44 263-313 299-343 (350)
85 PF08746 zf-RING-like: RING-li 90.4 0.11 2.4E-06 34.7 0.7 41 267-307 1-43 (43)
86 COG5183 SSM4 Protein involved 89.8 0.27 5.8E-06 51.7 3.2 54 261-315 9-69 (1175)
87 COG5236 Uncharacterized conser 89.6 0.52 1.1E-05 45.1 4.7 47 261-310 58-106 (493)
88 KOG4185 Predicted E3 ubiquitin 89.4 0.25 5.4E-06 46.5 2.5 47 265-311 4-54 (296)
89 KOG1100 Predicted E3 ubiquitin 89.4 0.18 4E-06 45.3 1.5 40 267-313 161-201 (207)
90 KOG0802 E3 ubiquitin ligase [P 88.2 0.27 5.8E-06 50.5 1.9 51 260-317 475-525 (543)
91 PF14447 Prok-RING_4: Prokaryo 86.8 0.35 7.5E-06 34.0 1.2 46 265-315 8-53 (55)
92 PF10272 Tmpp129: Putative tra 86.5 1.3 2.8E-05 43.0 5.5 28 285-312 311-351 (358)
93 KOG2114 Vacuolar assembly/sort 86.5 0.35 7.6E-06 51.2 1.6 42 265-311 841-882 (933)
94 KOG2932 E3 ubiquitin ligase in 86.4 0.24 5.2E-06 46.7 0.3 44 266-313 92-135 (389)
95 KOG2034 Vacuolar sorting prote 85.9 0.39 8.5E-06 51.1 1.6 36 262-298 815-850 (911)
96 KOG3161 Predicted E3 ubiquitin 84.9 0.26 5.6E-06 50.6 -0.2 44 265-311 12-56 (861)
97 PF14446 Prok-RING_1: Prokaryo 84.4 1.8 3.8E-05 30.4 3.8 43 264-310 5-50 (54)
98 KOG1001 Helicase-like transcri 84.1 0.47 1E-05 50.0 1.2 47 265-315 455-503 (674)
99 PF04641 Rtf2: Rtf2 RING-finge 83.7 1.3 2.8E-05 41.1 3.9 52 262-314 111-163 (260)
100 KOG0309 Conserved WD40 repeat- 82.6 0.82 1.8E-05 48.0 2.2 26 281-306 1044-1069(1081)
101 KOG4362 Transcriptional regula 82.3 0.32 6.9E-06 50.7 -0.8 49 264-315 21-72 (684)
102 PF11023 DUF2614: Protein of u 81.8 13 0.00028 30.1 8.3 25 296-320 80-104 (114)
103 KOG0298 DEAD box-containing he 81.8 0.47 1E-05 52.4 0.1 46 264-311 1153-1198(1394)
104 KOG3053 Uncharacterized conser 81.3 0.9 1.9E-05 41.8 1.8 52 263-314 19-84 (293)
105 COG5175 MOT2 Transcriptional r 79.9 1.3 2.8E-05 42.4 2.4 53 262-314 12-66 (480)
106 KOG3002 Zn finger protein [Gen 78.5 1.4 3E-05 41.9 2.2 44 263-313 47-92 (299)
107 KOG1829 Uncharacterized conser 75.8 0.98 2.1E-05 46.5 0.3 42 264-308 511-557 (580)
108 KOG3899 Uncharacterized conser 75.3 1.6 3.4E-05 41.0 1.5 29 285-313 325-366 (381)
109 KOG0825 PHD Zn-finger protein 75.2 2.3 4.9E-05 45.0 2.8 51 264-314 96-156 (1134)
110 KOG3005 GIY-YIG type nuclease 74.2 2.2 4.7E-05 39.6 2.1 47 265-311 183-242 (276)
111 COG5220 TFB3 Cdk activating ki 73.6 1.1 2.4E-05 40.9 0.1 50 263-312 9-64 (314)
112 KOG4367 Predicted Zn-finger pr 73.6 1.7 3.6E-05 43.0 1.3 35 263-300 3-37 (699)
113 PF05290 Baculo_IE-1: Baculovi 70.7 3.9 8.5E-05 34.1 2.6 50 265-317 81-137 (140)
114 PF13901 DUF4206: Domain of un 66.3 4.1 9E-05 36.4 2.2 40 265-309 153-197 (202)
115 KOG0269 WD40 repeat-containing 65.8 4.7 0.0001 42.5 2.7 42 263-306 778-820 (839)
116 COG5524 Bacteriorhodopsin [Gen 62.7 50 0.0011 31.1 8.5 103 18-152 104-214 (285)
117 KOG2817 Predicted E3 ubiquitin 61.9 7 0.00015 38.3 2.9 44 265-308 335-381 (394)
118 KOG2066 Vacuolar assembly/sort 60.0 4 8.6E-05 43.2 0.9 42 265-307 785-830 (846)
119 smart00249 PHD PHD zinc finger 58.2 6 0.00013 25.4 1.3 30 267-296 2-31 (47)
120 KOG1815 Predicted E3 ubiquitin 56.9 6.3 0.00014 39.5 1.8 37 262-300 68-104 (444)
121 KOG1812 Predicted E3 ubiquitin 53.5 5.2 0.00011 39.4 0.5 37 264-300 146-183 (384)
122 PF02891 zf-MIZ: MIZ/SP-RING z 53.2 4.1 8.8E-05 28.0 -0.2 42 266-310 4-50 (50)
123 PF14169 YdjO: Cold-inducible 51.0 7.5 0.00016 27.8 0.9 15 301-315 39-53 (59)
124 smart00132 LIM Zinc-binding do 47.8 20 0.00044 21.9 2.5 36 267-311 2-37 (39)
125 PF05715 zf-piccolo: Piccolo Z 45.8 13 0.00029 26.5 1.4 16 301-316 2-17 (61)
126 KOG4718 Non-SMC (structural ma 44.8 11 0.00023 34.0 1.0 41 265-307 182-222 (235)
127 TIGR02741 TraQ type-F conjugat 43.8 22 0.00047 26.5 2.4 22 24-49 32-53 (80)
128 PRK13727 conjugal transfer pil 42.8 23 0.00049 26.4 2.3 22 24-49 32-53 (80)
129 KOG3800 Predicted E3 ubiquitin 41.9 22 0.00047 33.5 2.6 43 273-315 10-54 (300)
130 PF00628 PHD: PHD-finger; Int 41.7 11 0.00023 25.4 0.5 43 267-309 2-50 (51)
131 KOG2068 MOT2 transcription fac 40.4 24 0.00053 33.8 2.8 52 265-317 250-303 (327)
132 KOG2927 Membrane component of 40.2 54 0.0012 31.9 5.0 15 137-151 242-259 (372)
133 PF09125 COX2-transmemb: Cytoc 39.8 34 0.00073 22.0 2.4 24 24-47 11-34 (38)
134 KOG1812 Predicted E3 ubiquitin 39.2 14 0.00031 36.3 1.1 44 265-308 307-352 (384)
135 PF13717 zinc_ribbon_4: zinc-r 38.6 15 0.00032 23.4 0.7 25 266-290 4-36 (36)
136 PF01102 Glycophorin_A: Glycop 37.8 45 0.00098 27.4 3.6 8 169-176 66-73 (122)
137 KOG3842 Adaptor protein Pellin 37.3 40 0.00087 32.3 3.6 50 264-313 341-415 (429)
138 KOG3386 Copper transporter [In 35.7 1.9E+02 0.0041 24.7 7.3 28 165-193 110-137 (155)
139 KOG2041 WD40 repeat protein [G 35.5 41 0.00089 35.8 3.7 47 262-312 1129-1185(1189)
140 PF04423 Rad50_zn_hook: Rad50 35.4 13 0.00029 25.6 0.1 12 302-313 21-32 (54)
141 PF05478 Prominin: Prominin; 34.9 37 0.00081 36.7 3.5 28 165-196 90-117 (806)
142 PF07649 C1_3: C1-like domain; 34.6 25 0.00055 21.1 1.3 29 266-294 2-30 (30)
143 KOG4739 Uncharacterized protei 33.2 24 0.00052 32.3 1.5 33 266-299 5-37 (233)
144 PRK05978 hypothetical protein; 32.8 24 0.00052 30.0 1.3 25 285-314 39-65 (148)
145 COG3671 Predicted membrane pro 32.7 84 0.0018 25.8 4.3 45 165-209 70-114 (125)
146 PF07975 C1_4: TFIIH C1-like d 32.6 30 0.00064 24.0 1.5 41 267-308 2-50 (51)
147 PF11712 Vma12: Endoplasmic re 32.1 87 0.0019 26.1 4.6 29 121-149 76-104 (142)
148 PRK11827 hypothetical protein; 31.9 18 0.00038 26.0 0.3 20 295-314 2-21 (60)
149 PF06844 DUF1244: Protein of u 30.4 31 0.00067 25.3 1.3 12 288-299 11-22 (68)
150 TIGR01294 P_lamban phospholamb 29.3 77 0.0017 21.4 3.0 6 182-187 41-46 (52)
151 PF15431 TMEM190: Transmembran 29.1 53 0.0012 26.5 2.6 31 52-82 48-81 (134)
152 KOG4050 Glutamate transporter 28.7 1.2E+02 0.0027 26.2 4.9 61 132-193 76-139 (188)
153 KOG3113 Uncharacterized conser 28.3 1.4E+02 0.003 27.9 5.4 50 264-315 111-161 (293)
154 PF02656 DUF202: Domain of unk 28.2 1.3E+02 0.0027 21.8 4.4 46 37-82 17-65 (73)
155 PHA02898 virion envelope prote 28.1 1.7E+02 0.0037 22.7 5.1 41 47-87 30-73 (92)
156 COG5109 Uncharacterized conser 27.8 47 0.001 31.8 2.4 43 265-307 337-382 (396)
157 TIGR00622 ssl1 transcription f 27.5 71 0.0015 25.9 3.1 44 265-308 56-110 (112)
158 PF13832 zf-HC5HC2H_2: PHD-zin 27.0 58 0.0013 25.6 2.6 31 264-296 55-87 (110)
159 PF13061 DUF3923: Protein of u 26.6 1.2E+02 0.0026 22.1 3.9 50 27-76 2-59 (66)
160 KOG4753 Predicted membrane pro 26.6 66 0.0014 26.3 2.8 24 3-26 4-27 (124)
161 cd00350 rubredoxin_like Rubred 26.5 45 0.00098 20.6 1.5 10 300-309 16-25 (33)
162 KOG1729 FYVE finger containing 25.5 13 0.00029 35.1 -1.6 37 266-302 216-252 (288)
163 PF02985 HEAT: HEAT repeat; I 25.4 36 0.00079 20.3 0.9 16 2-17 10-25 (31)
164 PRK10633 hypothetical protein; 24.9 3.1E+02 0.0068 20.8 6.2 19 130-148 13-31 (80)
165 PF03119 DNA_ligase_ZBD: NAD-d 24.8 28 0.0006 20.9 0.2 14 303-316 1-14 (28)
166 PF06667 PspB: Phage shock pro 24.5 1.8E+02 0.0039 21.8 4.6 24 202-225 23-48 (75)
167 PF10571 UPF0547: Uncharacteri 24.4 41 0.00089 19.8 0.9 8 302-309 15-22 (26)
168 KOG3799 Rab3 effector RIM1 and 24.3 19 0.00042 30.1 -0.7 49 261-309 62-115 (169)
169 PF06937 EURL: EURL protein; 24.0 52 0.0011 30.7 2.0 18 288-305 56-74 (285)
170 PF13239 2TM: 2TM domain 23.6 1.2E+02 0.0026 22.7 3.7 25 55-79 37-62 (83)
171 PF10856 DUF2678: Protein of u 23.6 1.1E+02 0.0023 25.0 3.5 37 48-84 48-84 (118)
172 PRK02935 hypothetical protein; 23.4 2.1E+02 0.0046 22.9 5.0 24 297-320 82-105 (110)
173 PF14311 DUF4379: Domain of un 23.2 48 0.0011 22.8 1.3 22 285-307 34-55 (55)
174 PF00412 LIM: LIM domain; Int 23.2 68 0.0015 21.7 2.0 40 267-315 1-40 (58)
175 PF00558 Vpu: Vpu protein; In 22.3 42 0.00091 25.6 0.9 13 77-89 25-37 (81)
176 KOG1245 Chromatin remodeling c 22.2 31 0.00067 39.7 0.2 51 261-311 1105-1159(1404)
177 PF04710 Pellino: Pellino; In 20.6 33 0.00072 33.8 0.0 50 264-313 328-402 (416)
178 COG5627 MMS21 DNA repair prote 20.3 54 0.0012 30.1 1.3 40 264-305 189-230 (275)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.3e-20 Score=173.75 Aligned_cols=81 Identities=36% Similarity=0.771 Sum_probs=69.3
Q ss_pred hccCCCHHHHhhcccceeeeccccccCcCCCCCCCCCcccccCCCCCCcccCCCCCCccccccccccCCCceEEeCCCCc
Q 020673 209 DQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH 288 (323)
Q Consensus 209 ~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~ 288 (323)
+.+++.++.++++|..+|+...+.+.. ..|+|||++|++||++|.|||+|.
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~-----------------------------~~CaIClEdY~~GdklRiLPC~H~ 253 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDAT-----------------------------DTCAICLEDYEKGDKLRILPCSHK 253 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCC-----------------------------ceEEEeecccccCCeeeEecCCCc
Confidence 456889999999999999876544211 479999999999999999999999
Q ss_pred cchHhHHHHHhcCCC-CccccccccCCCCcc
Q 020673 289 FHCACVDKWLYINAT-CPLCKYNILKSSSNQ 318 (323)
Q Consensus 289 FH~~CId~WL~~~~t-CPlCR~~i~~~~~~~ 318 (323)
||..|||+||..+.+ ||+||+++.+....+
T Consensus 254 FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~ 284 (348)
T KOG4628|consen 254 FHVNCIDPWLTQTRTFCPVCKRDIRTDSGSE 284 (348)
T ss_pred hhhccchhhHhhcCccCCCCCCcCCCCCCCC
Confidence 999999999998755 999999998766544
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.57 E-value=8e-16 Score=104.16 Aligned_cols=43 Identities=49% Similarity=1.291 Sum_probs=40.8
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCcccc
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 308 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 308 (323)
+|+||+++|.+++.+..++|+|.||.+||.+|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.3e-13 Score=124.72 Aligned_cols=52 Identities=44% Similarity=1.051 Sum_probs=47.8
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHh-cCCCCccccccccC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~ 313 (323)
....+|+|||++|-.+|.++.|||+|.||..|+++|+. -+..||+||.+++.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34579999999999999999999999999999999998 67889999999875
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.35 E-value=6.2e-13 Score=99.85 Aligned_cols=45 Identities=44% Similarity=1.068 Sum_probs=36.6
Q ss_pred CCccccccccccC----------CCceEEeCCCCccchHhHHHHHhcCCCCcccc
Q 020673 264 DAECCICLSAYDD----------GVELRELPCGHHFHCACVDKWLYINATCPLCK 308 (323)
Q Consensus 264 d~~C~ICL~~y~~----------~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 308 (323)
+..|+||+++|.+ +-.+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3469999999942 23456668999999999999999999999997
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.33 E-value=1.3e-12 Score=118.71 Aligned_cols=50 Identities=34% Similarity=0.798 Sum_probs=41.9
Q ss_pred CCCccccccccccCCCc----eEEe-CCCCccchHhHHHHHhcCCCCcccccccc
Q 020673 263 EDAECCICLSAYDDGVE----LREL-PCGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~----lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
++.+|+||++.+.+++. +..+ +|+|.||.+||.+|++.+.+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 34789999999876541 2344 59999999999999999999999999875
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.2e-12 Score=120.10 Aligned_cols=57 Identities=35% Similarity=0.929 Sum_probs=47.4
Q ss_pred cccCCCCCCcccccccc-ccCC---------CceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 257 EHVLSNEDAECCICLSA-YDDG---------VELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 257 e~~~~~ed~~C~ICL~~-y~~~---------~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
+.++..+|..|.||+++ ++.+ ...+.|||+|.||..|++.|+++++|||+||.++.-
T Consensus 280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred hhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 34556778999999999 5544 235789999999999999999999999999999543
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.06 E-value=1.5e-10 Score=101.35 Aligned_cols=52 Identities=37% Similarity=0.837 Sum_probs=43.3
Q ss_pred CCCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc----------------CCCCccccccccCC
Q 020673 260 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----------------NATCPLCKYNILKS 314 (323)
Q Consensus 260 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~----------------~~tCPlCR~~i~~~ 314 (323)
...++.+|+||++.++++ ..++|+|.||..||.+|+.. ...||+||.++...
T Consensus 14 ~~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred cCCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 345678999999998877 67899999999999999852 35799999998653
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.00 E-value=2.9e-10 Score=75.75 Aligned_cols=44 Identities=50% Similarity=1.112 Sum_probs=36.9
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccc
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNI 311 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i 311 (323)
+|+||++.+ .+.....+|+|.||..|+++|++. +..||.||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 334455669999999999999997 78899999764
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.2e-10 Score=103.95 Aligned_cols=54 Identities=30% Similarity=0.778 Sum_probs=47.1
Q ss_pred cCCCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 259 VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 259 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
...+.+..|.+||+.-+++ ..+||+|.|+..||..|+..++.||+||....+++
T Consensus 234 ~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred cCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 4455668999999998777 78999999999999999999999999999876643
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.97 E-value=2.8e-10 Score=79.03 Aligned_cols=47 Identities=40% Similarity=0.875 Sum_probs=39.8
Q ss_pred CCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCcccccccc
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
|+..|.||++...+ ...+||+|. |+..|+.+|++.+..||+||++|.
T Consensus 1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35689999998655 588999999 999999999999999999999885
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.2e-10 Score=98.25 Aligned_cols=51 Identities=31% Similarity=0.703 Sum_probs=43.2
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc---CCCCccccccccCC
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILKS 314 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~i~~~ 314 (323)
....-+|.|||+.=+|+ .++.|+|.|++.||.+||.. +..||+||..|...
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 45568999999997777 67889999999999999986 45699999988654
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.4e-10 Score=115.32 Aligned_cols=59 Identities=34% Similarity=0.772 Sum_probs=49.9
Q ss_pred ccCCCCCCccccccccccCCCc--eEEeCCCCccchHhHHHHHhcCCCCccccccccCCCC
Q 020673 258 HVLSNEDAECCICLSAYDDGVE--LRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 316 (323)
Q Consensus 258 ~~~~~ed~~C~ICL~~y~~~~~--lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~ 316 (323)
+.....+..|.||++++..+++ .+.|||+|.||..|+.+|+++.++||.||..+..+..
T Consensus 285 ~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 285 RGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL 345 (543)
T ss_pred hhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence 3345568899999999998765 7899999999999999999999999999995554433
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.91 E-value=9.5e-10 Score=83.93 Aligned_cols=51 Identities=35% Similarity=0.769 Sum_probs=40.0
Q ss_pred CCCcccccccccc--------CCC--ceEEeCCCCccchHhHHHHHhc---CCCCccccccccC
Q 020673 263 EDAECCICLSAYD--------DGV--ELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~--------~~~--~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~i~~ 313 (323)
+|..|.||...|+ .++ .+..-.|+|.||..||.+|+.. +.+||+||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4678999999987 333 3333359999999999999985 5789999997654
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.88 E-value=1.1e-09 Score=72.06 Aligned_cols=39 Identities=44% Similarity=1.056 Sum_probs=33.7
Q ss_pred cccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccc
Q 020673 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 307 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlC 307 (323)
|.||++.+.+ .+..++|+|.|+.+|+.+|++.+.+||.|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8899999887 45688999999999999999999999998
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.72 E-value=8.5e-09 Score=69.64 Aligned_cols=44 Identities=32% Similarity=0.773 Sum_probs=39.5
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccc
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY 309 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 309 (323)
.|.||.++|.++...+.++|+|.|+.+|+++.......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999977777899999999999999999867788999985
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.72 E-value=7.1e-09 Score=92.12 Aligned_cols=50 Identities=26% Similarity=0.693 Sum_probs=38.0
Q ss_pred CCCccccccccccCC-----CceEEeC-CCCccchHhHHHHHhcC------CCCcccccccc
Q 020673 263 EDAECCICLSAYDDG-----VELRELP-CGHHFHCACVDKWLYIN------ATCPLCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~y~~~-----~~lr~LP-C~H~FH~~CId~WL~~~------~tCPlCR~~i~ 312 (323)
++.+|+|||+..-+. ..-..|+ |+|.||..||++|.+.+ .+||+||....
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 457899999886332 1233564 99999999999999753 45999998764
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.71 E-value=1.1e-08 Score=65.57 Aligned_cols=38 Identities=50% Similarity=1.113 Sum_probs=33.1
Q ss_pred cccccccccCCCceEEeCCCCccchHhHHHHHh-cCCCCccc
Q 020673 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLC 307 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-~~~tCPlC 307 (323)
|+||++. ......+||+|.||..|+++|++ .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899988 34568899999999999999998 67789987
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.69 E-value=8e-09 Score=68.42 Aligned_cols=39 Identities=51% Similarity=1.187 Sum_probs=34.7
Q ss_pred cccccccccCCCceEEeCCCCccchHhHHHHHh--cCCCCccc
Q 020673 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLY--INATCPLC 307 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~--~~~tCPlC 307 (323)
|+||++.+.++. +.++|+|.|+.+|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 889999988874 5889999999999999999 55779998
No 19
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=9.1e-09 Score=93.41 Aligned_cols=53 Identities=32% Similarity=0.694 Sum_probs=44.8
Q ss_pred CCCCccccccccccCCC-------ceEEeCCCCccchHhHHHHHh--cCCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGV-------ELRELPCGHHFHCACVDKWLY--INATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~-------~lr~LPC~H~FH~~CId~WL~--~~~tCPlCR~~i~~~ 314 (323)
.+|..|+||=..+...+ +...|.|+|.||..||+.|.. ++++||.||..+.-+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 45689999998886555 678899999999999999975 689999999877543
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.1e-08 Score=86.10 Aligned_cols=50 Identities=30% Similarity=0.679 Sum_probs=43.3
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
-..|+|||+.|.+... .-+.|+|+|+++||+.-++....||+|++.|.++
T Consensus 131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3789999999987743 3477999999999999999999999999987664
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.59 E-value=4.9e-08 Score=70.53 Aligned_cols=46 Identities=26% Similarity=0.483 Sum_probs=41.6
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
..|+||.+.++++ ..+||+|.|...||.+|++.+.+||.|+.++..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4699999999987 678999999999999999999999999998754
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.58 E-value=3.3e-08 Score=66.13 Aligned_cols=38 Identities=39% Similarity=0.989 Sum_probs=30.5
Q ss_pred cccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccc
Q 020673 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLC 307 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlC 307 (323)
|+||++-|+++ ..|+|+|.|...||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 789999999999999999754 369988
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.58 E-value=4.2e-08 Score=73.22 Aligned_cols=49 Identities=31% Similarity=0.686 Sum_probs=37.9
Q ss_pred Cccccccccc-----------cCCCceEEe--CCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 265 AECCICLSAY-----------DDGVELREL--PCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 265 ~~C~ICL~~y-----------~~~~~lr~L--PC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
+.|+||...| ..+++.... -|+|.||..||.+||..+..||++|+.-.-
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 4566666554 356665544 399999999999999999999999987654
No 24
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.57 E-value=4.3e-08 Score=67.78 Aligned_cols=42 Identities=33% Similarity=0.786 Sum_probs=34.0
Q ss_pred ccccccccccCCCceEEeCCC-----CccchHhHHHHHhc--CCCCcccc
Q 020673 266 ECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLCK 308 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR 308 (323)
.|-||++ +.++++....||. |.+|.+|+++|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 4455556689986 99999999999965 45899995
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.6e-07 Score=91.54 Aligned_cols=49 Identities=29% Similarity=0.790 Sum_probs=39.6
Q ss_pred CccccccccccCC---C-----------ceEEeCCCCccchHhHHHHHh-cCCCCccccccccC
Q 020673 265 AECCICLSAYDDG---V-----------ELRELPCGHHFHCACVDKWLY-INATCPLCKYNILK 313 (323)
Q Consensus 265 ~~C~ICL~~y~~~---~-----------~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~ 313 (323)
.+|+||+.+..-. . ....+||+|.||..|+.+|+. .+-.||.||.+++.
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 6899999886511 1 134569999999999999999 67799999998863
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=1.3e-07 Score=92.18 Aligned_cols=50 Identities=28% Similarity=0.639 Sum_probs=43.8
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
.....|.||++.|.+. ..+||+|.||..||..|+..+..||+||..+...
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 3457999999999877 4689999999999999999888999999988653
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.2e-08 Score=72.11 Aligned_cols=49 Identities=35% Similarity=0.836 Sum_probs=37.4
Q ss_pred CCcccccccccc--------CCCceEEe--CCCCccchHhHHHHHhc---CCCCcccccccc
Q 020673 264 DAECCICLSAYD--------DGVELREL--PCGHHFHCACVDKWLYI---NATCPLCKYNIL 312 (323)
Q Consensus 264 d~~C~ICL~~y~--------~~~~lr~L--PC~H~FH~~CId~WL~~---~~tCPlCR~~i~ 312 (323)
+.+|-||..+|. .+|..-.+ .|.|.||..||.+|+.. ++.||+||+.-.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 348999999987 34433222 39999999999999975 467999998754
No 28
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.6e-07 Score=73.48 Aligned_cols=48 Identities=29% Similarity=0.652 Sum_probs=36.9
Q ss_pred CCccccccccc------------cCCCceEEeC--CCCccchHhHHHHHhcCCCCccccccc
Q 020673 264 DAECCICLSAY------------DDGVELRELP--CGHHFHCACVDKWLYINATCPLCKYNI 311 (323)
Q Consensus 264 d~~C~ICL~~y------------~~~~~lr~LP--C~H~FH~~CId~WL~~~~tCPlCR~~i 311 (323)
-+.|+||..-+ ...++..+-- |+|.||..||.+||+.+..||||.++-
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 46899997443 1334544443 999999999999999999999997754
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.16 E-value=1.4e-06 Score=58.53 Aligned_cols=38 Identities=34% Similarity=0.728 Sum_probs=22.8
Q ss_pred cccccccccCCC-ceEEeCCCCccchHhHHHHHhcC----CCCc
Q 020673 267 CCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYIN----ATCP 305 (323)
Q Consensus 267 C~ICL~~y~~~~-~lr~LPC~H~FH~~CId~WL~~~----~tCP 305 (323)
|+||.+ |.+++ .-..|||+|.|..+||+++++.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86644 45789999999999999999854 3476
No 30
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.13 E-value=9.3e-07 Score=85.64 Aligned_cols=50 Identities=34% Similarity=0.943 Sum_probs=41.0
Q ss_pred CCCCCccccccccccCCC-ceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673 261 SNEDAECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
..|-.+|++||+.+.+.. -++...|+|.||..|+.+| -..+||+||+--.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 356689999999998765 4566679999999999999 4567999998554
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.2e-06 Score=79.72 Aligned_cols=51 Identities=29% Similarity=0.710 Sum_probs=44.1
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHH-HHhcCCC-CccccccccCCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDK-WLYINAT-CPLCKYNILKSS 315 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~-WL~~~~t-CPlCR~~i~~~~ 315 (323)
..|..|.||++..+.. ..+||+|.|+..||-. |-+++.. ||+||+.+..+.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4578999999997776 7899999999999999 9988866 999999876543
No 32
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.02 E-value=6.6e-07 Score=92.95 Aligned_cols=49 Identities=39% Similarity=0.880 Sum_probs=37.8
Q ss_pred CCCCccccccccccCCCceEEe-----C-CCCccchHhHHHHHhc--CCCCcccccccc
Q 020673 262 NEDAECCICLSAYDDGVELREL-----P-CGHHFHCACVDKWLYI--NATCPLCKYNIL 312 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~L-----P-C~H~FH~~CId~WL~~--~~tCPlCR~~i~ 312 (323)
.+-.+|+||.+-..--| |.| | |.|-||..|+.+|++. +.+||+||.++.
T Consensus 1467 sG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34579999988765111 233 3 8899999999999985 578999998875
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=5.8e-06 Score=77.75 Aligned_cols=53 Identities=28% Similarity=0.614 Sum_probs=40.0
Q ss_pred CCCcccccccc-ccCCC-ceEEeCCCCccchHhHHHHHh-cCCCCccccccccCCC
Q 020673 263 EDAECCICLSA-YDDGV-ELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKSS 315 (323)
Q Consensus 263 ed~~C~ICL~~-y~~~~-~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~~~ 315 (323)
++..|++|..+ |-.++ .+..-+|+|.|+..||+..+. ....||.|+.++....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 35689999986 54444 233337999999999999654 4568999999887654
No 34
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.92 E-value=5.2e-06 Score=62.20 Aligned_cols=49 Identities=24% Similarity=0.472 Sum_probs=39.4
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 314 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~ 314 (323)
+.-.|+|+.+-+.|+ ..+|++|.|-..||.+|++. +.+||+|+.++...
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 346799999999999 78999999999999999998 89999999988764
No 35
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.2e-06 Score=79.77 Aligned_cols=45 Identities=40% Similarity=0.987 Sum_probs=36.0
Q ss_pred CCccccccccccCCCceEEeC-CCCccchHhHHHHHhc---CCCCcccc
Q 020673 264 DAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI---NATCPLCK 308 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR 308 (323)
.+.|.||.+-+-...++.-.. |+|.||..|+..|+.. +.+||.||
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 378999944444455666666 9999999999999985 46899999
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.87 E-value=3.4e-06 Score=62.75 Aligned_cols=49 Identities=35% Similarity=0.817 Sum_probs=24.4
Q ss_pred CccccccccccCCCceEEe-----CCCCccchHhHHHHHhc---C--------CCCccccccccC
Q 020673 265 AECCICLSAYDDGVELREL-----PCGHHFHCACVDKWLYI---N--------ATCPLCKYNILK 313 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L-----PC~H~FH~~CId~WL~~---~--------~tCPlCR~~i~~ 313 (323)
.+|.||.+...+++++..+ .|++.||..|+.+||.. + .+||.|+++|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 5799999987644433222 37799999999999963 1 249999998864
No 37
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2.1e-05 Score=74.72 Aligned_cols=52 Identities=33% Similarity=0.708 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccCCCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKSSS 316 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~~~~ 316 (323)
++..+|.|||++-.|- ..|||.|. .+..|-+.---+.+.||+||++|..--+
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~ 340 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLE 340 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhhhe
Confidence 4568999999996665 79999997 9999999976678889999999875433
No 38
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.8e-05 Score=78.20 Aligned_cols=48 Identities=29% Similarity=0.700 Sum_probs=39.0
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-----CCCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-----ATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-----~tCPlCR~~i~~~ 314 (323)
+..|+|||+...-. ..+-|+|.|+..||-..+... ..||+|+..|..+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 78999999996655 344499999999999988643 5699999988763
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.2e-05 Score=73.92 Aligned_cols=45 Identities=36% Similarity=0.827 Sum_probs=40.4
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY 309 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 309 (323)
.+...|+||++.|.++ +.+||+|.|+..|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4557899999999999 88999999999999999886677999993
No 40
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.72 E-value=1.2e-05 Score=75.54 Aligned_cols=48 Identities=29% Similarity=0.732 Sum_probs=43.7
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
..|-||.+=|..+ ..+||+|.|+.-||.+.|..+..||+|+.++.+..
T Consensus 24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 5799999999888 78899999999999999999999999999887643
No 41
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.64 E-value=1.4e-05 Score=74.04 Aligned_cols=52 Identities=29% Similarity=0.777 Sum_probs=43.7
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHh-----------------------cCCCCccccccccCCCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----------------------INATCPLCKYNILKSSS 316 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-----------------------~~~tCPlCR~~i~~~~~ 316 (323)
-+|.|||--|.+++....++|.|.||..|+.+.|. ..+.||+||..|....+
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 57999999999999999999999999999987661 13469999998875443
No 42
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.63 E-value=9.9e-06 Score=83.05 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=45.3
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
...|.+||..+.++.....-+|.|.||..||+.|-+.-+|||+||....+
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 36899999999999888888899999999999999999999999987654
No 43
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.53 E-value=4.5e-05 Score=70.41 Aligned_cols=46 Identities=28% Similarity=0.642 Sum_probs=41.5
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
..|-||-+-+..+ -.++|+|.|+.-||..-|..+..||+||.+-.+
T Consensus 26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 5799999998887 678899999999999999999999999987654
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=4e-05 Score=73.49 Aligned_cols=52 Identities=29% Similarity=0.798 Sum_probs=40.2
Q ss_pred CCCCccccccccccCCC----ceEEeC-CCCccchHhHHHHH--hc-----CCCCccccccccC
Q 020673 262 NEDAECCICLSAYDDGV----ELRELP-CGHHFHCACVDKWL--YI-----NATCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~----~lr~LP-C~H~FH~~CId~WL--~~-----~~tCPlCR~~i~~ 313 (323)
..+.+|.||++...+.. ....|| |+|.|+..||++|- ++ +..||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45689999999866553 134456 99999999999998 34 5679999986543
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=6.5e-05 Score=72.30 Aligned_cols=47 Identities=38% Similarity=0.937 Sum_probs=36.6
Q ss_pred CCccccccccccCCC--ceEEeCCCCccchHhHHHHHhc--CCCCcccccc
Q 020673 264 DAECCICLSAYDDGV--ELRELPCGHHFHCACVDKWLYI--NATCPLCKYN 310 (323)
Q Consensus 264 d~~C~ICL~~y~~~~--~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~ 310 (323)
...|+|||+.|+-.- .+..|.|+|.|-..||++||-+ +..||.|+..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 357999999998443 3444559999999999999953 3569999754
No 46
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=8.7e-05 Score=68.95 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=41.4
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 314 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~ 314 (323)
.+++|.||+.+-.-+ ..|+|+|.|+-.||+.=.+. +.+||+||.+|.+.
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 347899999996665 68999999999999988765 56799999999764
No 47
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.21 E-value=0.0001 Score=70.61 Aligned_cols=46 Identities=33% Similarity=0.732 Sum_probs=39.3
Q ss_pred CCccccccccccCC-CceEEeCCCCccchHhHHHHHhcC--CCCccccc
Q 020673 264 DAECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYIN--ATCPLCKY 309 (323)
Q Consensus 264 d~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CId~WL~~~--~tCPlCR~ 309 (323)
+.-|..|=+.|... +.+-.|||.|+||..|+.+.|.+| .+||-||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 35799999988644 568889999999999999999887 56999994
No 48
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=5.4e-05 Score=71.67 Aligned_cols=51 Identities=31% Similarity=0.584 Sum_probs=43.4
Q ss_pred CCCccccccccccCCCceEEeC-CCCccchHhHHHHHhc-CCCCccccccccCCCC
Q 020673 263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI-NATCPLCKYNILKSSS 316 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~~ 316 (323)
.+..|.|||+-++.. +..+ |.|-|+.+||.+=++. +.+||.||+.+..+-+
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 457899999988776 5666 9999999999999975 7899999999877654
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00012 Score=51.05 Aligned_cols=45 Identities=31% Similarity=0.663 Sum_probs=33.6
Q ss_pred CccccccccccCCCceEEeCCCCc-cchHhHHHHHh-cCCCCcccccccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHH-FHCACVDKWLY-INATCPLCKYNIL 312 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~-~~~tCPlCR~~i~ 312 (323)
++|.||.+.-.|. ....|+|. .+-+|-.+-.+ .+..||+||.+|.
T Consensus 8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 7899998875544 34459997 66677555444 7899999999875
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00053 Score=67.14 Aligned_cols=51 Identities=33% Similarity=0.818 Sum_probs=44.7
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
..+.+|+||...+.++ ..+||+|.|+..||++=+..+..||+||.++.+-.
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVELP 132 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccccch
Confidence 4568999999998888 67799999999999998888899999999988643
No 51
>PHA02862 5L protein; Provisional
Probab=96.90 E-value=0.00062 Score=56.93 Aligned_cols=45 Identities=29% Similarity=0.677 Sum_probs=35.4
Q ss_pred CccccccccccCCCceEEeCCC-----CccchHhHHHHHhc--CCCCccccccccC
Q 020673 265 AECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLCKYNILK 313 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR~~i~~ 313 (323)
+.|=||.++-+++ .-||. ..-|.+|+.+|++. +.+||+||.++.-
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 5799999985433 36765 67999999999974 5779999998754
No 52
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.87 E-value=0.00028 Score=51.04 Aligned_cols=48 Identities=21% Similarity=0.593 Sum_probs=23.3
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 316 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~ 316 (323)
-.|++|-+-++++ +..-.|.|.|+..||..-+ ...||+|+.+--.++-
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~--~~~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCI--GSECPVCHTPAWIQDI 55 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGT--TTB-SSS--B-S-SS-
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhc--CCCCCCcCChHHHHHH
Confidence 4699999988776 2334599999999998833 3559999988755443
No 53
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.80 E-value=0.0006 Score=56.58 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=31.6
Q ss_pred CccccccccccCCCceEEeCCC------CccchHhHHHHHhc
Q 020673 265 AECCICLSAYDDGVELRELPCG------HHFHCACVDKWLYI 300 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~------H~FH~~CId~WL~~ 300 (323)
.+|+||++...+++.+..++|+ |.||.+|+.+|-+.
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 6899999999997778888888 99999999999433
No 54
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.74 E-value=0.00086 Score=45.84 Aligned_cols=40 Identities=30% Similarity=0.853 Sum_probs=28.2
Q ss_pred cccccccccCCCceEEeCCC-----CccchHhHHHHHhc--CCCCccc
Q 020673 267 CCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLC 307 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlC 307 (323)
|-||+++-++++ .-..||+ ..-|.+|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999877666 3457866 48999999999974 5679987
No 55
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.00066 Score=57.77 Aligned_cols=37 Identities=35% Similarity=0.755 Sum_probs=33.0
Q ss_pred CCcccCCCCCCccccccccccCCCceEEeCCCCccch
Q 020673 255 PNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHC 291 (323)
Q Consensus 255 ~~e~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~ 291 (323)
.++.++..+.-+|.|||++++.++.+..|||-.+||+
T Consensus 168 YNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 168 YNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3566777777899999999999999999999999997
No 56
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.55 E-value=0.001 Score=64.13 Aligned_cols=47 Identities=30% Similarity=0.798 Sum_probs=39.3
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhc--CCCCccccccccCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNILKS 314 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~i~~~ 314 (323)
.-|-||-+. +..++.=||+|..+..|+..|-.. .++||.||.+|...
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 469999765 556788899999999999999854 68999999998654
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.47 E-value=0.0015 Score=64.24 Aligned_cols=54 Identities=30% Similarity=0.699 Sum_probs=45.3
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCCc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 317 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~~ 317 (323)
.++..|++|.....++-.. ..|+|.|+..|+.+|+..+..||.|+.++......
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 4568899999999988322 57999999999999999999999998887665443
No 58
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.43 E-value=0.0015 Score=46.54 Aligned_cols=40 Identities=25% Similarity=0.690 Sum_probs=28.8
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhc--CCCCcc
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPL 306 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--~~tCPl 306 (323)
..|+|.+..|+++ ++...|+|.|-++.|.++++. +..||.
T Consensus 12 ~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 12 LKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 6899999998876 566789999999999999944 456998
No 59
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0027 Score=56.90 Aligned_cols=54 Identities=26% Similarity=0.575 Sum_probs=43.9
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc--------CCCCccccccccCCCCc
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPLCKYNILKSSSN 317 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--------~~tCPlCR~~i~~~~~~ 317 (323)
-+..|..|--....+|.+| |-|-|.||.+|+++|--. .-.||-|..+|..+.+.
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 3467999999999998775 559999999999999853 23599999999876553
No 60
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.38 E-value=0.0022 Score=70.05 Aligned_cols=53 Identities=30% Similarity=0.664 Sum_probs=44.1
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----------CCCccccccccC
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----------ATCPLCKYNILK 313 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----------~tCPlCR~~i~~ 313 (323)
...|+.|-||..+--......+|.|+|+||..|.+.-|++. -.||+|+.+|..
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 35678999999887777788899999999999999877653 259999998864
No 61
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.23 E-value=0.0038 Score=53.24 Aligned_cols=49 Identities=31% Similarity=0.662 Sum_probs=36.3
Q ss_pred CCCCCccccccccccCCCceEEeCCC--C---ccchHhHHHHHhc--CCCCccccccccC
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCG--H---HFHCACVDKWLYI--NATCPLCKYNILK 313 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~--H---~FH~~CId~WL~~--~~tCPlCR~~i~~ 313 (323)
+..+..|=||.++.. ++ .-||. . .-|.+|+++|+.. +.+||+|+++..-
T Consensus 5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 345678999998843 22 25755 4 6699999999975 4679999887654
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.39 E-value=0.0062 Score=60.71 Aligned_cols=57 Identities=28% Similarity=0.618 Sum_probs=44.0
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHh-----cCCCCccccccccCCCCccccC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----INATCPLCKYNILKSSSNQDRE 321 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-----~~~tCPlCR~~i~~~~~~~~~~ 321 (323)
.+..+|.+|-++-+|. .+..|+|.|+.-||.+... .|-+||.|-..+.-..++.+-+
T Consensus 534 k~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ale 595 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALE 595 (791)
T ss_pred cCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhh
Confidence 3457899999885554 6788999999999988874 3688999988776665555443
No 63
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.005 Score=63.90 Aligned_cols=48 Identities=25% Similarity=0.609 Sum_probs=38.8
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS 315 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~ 315 (323)
-.|+.|=....|- ....|+|.||.+||.+-+.. ...||.|..+...++
T Consensus 644 LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 5899998776654 44559999999999999974 678999988876654
No 64
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.0089 Score=58.02 Aligned_cols=46 Identities=30% Similarity=0.725 Sum_probs=38.4
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcC--------CCCcccccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--------ATCPLCKYN 310 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~--------~tCPlCR~~ 310 (323)
..|+||.++....+-...|||+|+|++.|....+.+. -.||-++.+
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 6899999998877888999999999999999999642 248877553
No 65
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.28 E-value=0.0069 Score=47.94 Aligned_cols=33 Identities=27% Similarity=0.804 Sum_probs=28.0
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHH
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVD 295 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId 295 (323)
.++..|++|-..+.+ ......||+|.||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 445779999999987 567788999999999975
No 66
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.08 E-value=0.0079 Score=52.97 Aligned_cols=44 Identities=25% Similarity=0.547 Sum_probs=39.3
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i 311 (323)
..|.||-.+|+.+ ..+.|+|+|+..|.-+=++...+|-+|-+..
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 4899999999998 6778999999999999899999999997654
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.04 E-value=0.013 Score=40.13 Aligned_cols=44 Identities=25% Similarity=0.566 Sum_probs=20.3
Q ss_pred cccccccccCCCceEEeC--CCCccchHhHHHHHh-cCCCCccccccc
Q 020673 267 CCICLSAYDDGVELRELP--CGHHFHCACVDKWLY-INATCPLCKYNI 311 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LP--C~H~FH~~CId~WL~-~~~tCPlCR~~i 311 (323)
|++|.+++. ......+| |++.....|...=++ .+..||-||.++
T Consensus 1 cp~C~e~~d-~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELD-ETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccc-cCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 788999983 33335566 667778888666665 367899999875
No 68
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.86 E-value=0.012 Score=61.60 Aligned_cols=52 Identities=33% Similarity=0.676 Sum_probs=38.7
Q ss_pred CCCCCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcC-------CCCccccccc
Q 020673 260 LSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN-------ATCPLCKYNI 311 (323)
Q Consensus 260 ~~~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~-------~tCPlCR~~i 311 (323)
++.+..+|.||.+.+...+.+=.-. |-|+||..||.+|-+.. =.||-|++..
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 3445679999999988776543333 77999999999998642 1499998543
No 69
>PHA03096 p28-like protein; Provisional
Probab=94.78 E-value=0.014 Score=54.83 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=32.2
Q ss_pred CccccccccccCC----CceEEeC-CCCccchHhHHHHHhc---CCCCcccc
Q 020673 265 AECCICLSAYDDG----VELRELP-CGHHFHCACVDKWLYI---NATCPLCK 308 (323)
Q Consensus 265 ~~C~ICL~~y~~~----~~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR 308 (323)
.+|.||++...+. ..-..|| |+|.|+..||..|-.. +.+||.|+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 6899999886543 2344688 9999999999999864 23444443
No 70
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.30 E-value=0.013 Score=55.50 Aligned_cols=49 Identities=29% Similarity=0.547 Sum_probs=39.3
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
...|.+|-.=+-|.. ...-|-|.|++.||.+-|..+.+||.|.-.|.+.
T Consensus 15 ~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 468999977666664 2234999999999999999999999998766543
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.015 Score=54.19 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=41.6
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
..|-||-..|.++ ..+.|+|+|+..|--+=++....|++|-+.+-..
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceecccccccc
Confidence 4699999999998 6888999999999999999999999998876543
No 72
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.003 Score=60.74 Aligned_cols=51 Identities=24% Similarity=0.619 Sum_probs=46.2
Q ss_pred CccccccccccCC-CceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 265 AECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 265 ~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
..|+||-..|... +.+..+-|+|.+|.+|+.+||.....||.|++.+....
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 4699999999988 88899999999999999999999999999999887653
No 73
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.035 Score=52.96 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=42.4
Q ss_pred CCCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673 260 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 260 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
...||..|+||... +-.-...||+|.=+..||.+-|.+++.|=.||..+.
T Consensus 418 p~sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCcccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 33688999999766 333467899999999999999999999999998776
No 74
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.068 Score=49.45 Aligned_cols=50 Identities=28% Similarity=0.501 Sum_probs=38.7
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc--CCCCcccccccc
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNIL 312 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~i~ 312 (323)
...+.+|++|=+.=..+ -...||+|.|+-.||..=+.- ..+||.|-.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34568999998774444 345679999999999987653 468999988876
No 75
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.78 E-value=0.048 Score=51.44 Aligned_cols=50 Identities=30% Similarity=0.680 Sum_probs=39.0
Q ss_pred CCccccccccccCCCc-eEEeCCC-----CccchHhHHHHHh--cCCCCccccccccC
Q 020673 264 DAECCICLSAYDDGVE-LRELPCG-----HHFHCACVDKWLY--INATCPLCKYNILK 313 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~-lr~LPC~-----H~FH~~CId~WL~--~~~tCPlCR~~i~~ 313 (323)
+..|-||..+...... .-+.||. +..|..|+++|+. .+.+|.+|++....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 5789999998665432 4577876 7789999999998 56779999886543
No 76
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.34 E-value=0.085 Score=45.05 Aligned_cols=37 Identities=30% Similarity=0.595 Sum_probs=24.1
Q ss_pred CCCccccccccccCCCc---------eEEeCCC-CccchHhHHHHHh
Q 020673 263 EDAECCICLSAYDDGVE---------LRELPCG-HHFHCACVDKWLY 299 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~---------lr~LPC~-H~FH~~CId~WL~ 299 (323)
||+.|+|||+-=.+... .|-.-|+ -.=|..|+|+.-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 56899999987544411 2222354 3569999999764
No 77
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=0.1 Score=47.60 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=46.7
Q ss_pred CCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
....|++|.+.+.+...+..|. |+|+|..+|+.+..+....||+|-.++.+.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 4578999999999999988885 9999999999999998999999988776543
No 78
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.079 Score=50.80 Aligned_cols=45 Identities=27% Similarity=0.576 Sum_probs=33.6
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
-+..|.||+++..+ ...+||+|.=+ |..- -+...+||+||+.|..
T Consensus 304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccc---eeeecCCcEEE--chHH-HhhCCCCchhHHHHHH
Confidence 34679999999776 47899999844 5554 3345669999998753
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.52 E-value=0.059 Score=50.40 Aligned_cols=45 Identities=29% Similarity=0.748 Sum_probs=35.3
Q ss_pred CccccccccccCCCceEEeC-CCCccchHhHHHHHhc-CCCCccc-ccccc
Q 020673 265 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI-NATCPLC-KYNIL 312 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~-~~tCPlC-R~~i~ 312 (323)
..|+.|-.-..+. ..+| |+|.|+.+||..-|.. ...||.| |++|.
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 5799988777666 4568 8899999999988764 5789999 44543
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=0.21 Score=47.44 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=39.3
Q ss_pred cCCCCCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCccccccc
Q 020673 259 VLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNI 311 (323)
Q Consensus 259 ~~~~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i 311 (323)
.++.+...|++|+..-.++ ..+. =+-+|+-.||-+.+...+.||+=-.+.
T Consensus 295 ~l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred cCCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3455668999999997766 3444 478999999999999999999865543
No 81
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.16 E-value=0.048 Score=37.05 Aligned_cols=33 Identities=21% Similarity=0.549 Sum_probs=23.7
Q ss_pred EeCCC-CccchHhHHHHHhcCCCCccccccccCC
Q 020673 282 ELPCG-HHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 282 ~LPC~-H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
...|+ |..+..|+..-|.++..||+|+.+++.+
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 45687 9999999999999999999999998764
No 82
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.12 Score=44.86 Aligned_cols=35 Identities=34% Similarity=0.786 Sum_probs=27.6
Q ss_pred EeCCCCccchHhHHHHHhc-----------CCCCccccccccCCCC
Q 020673 282 ELPCGHHFHCACVDKWLYI-----------NATCPLCKYNILKSSS 316 (323)
Q Consensus 282 ~LPC~H~FH~~CId~WL~~-----------~~tCPlCR~~i~~~~~ 316 (323)
-..|+.-||.-|+..||+. -..||.|-.+|.-+.+
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmS 232 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMS 232 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeecc
Confidence 3569999999999999963 1359999999876543
No 83
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.30 E-value=0.099 Score=48.84 Aligned_cols=45 Identities=29% Similarity=0.649 Sum_probs=38.3
Q ss_pred CccccccccccCCC-ceEEeCCCCccchHhHHHHHhcCCCCccccc
Q 020673 265 AECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKY 309 (323)
Q Consensus 265 ~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 309 (323)
..|+||.+.+.+.. .+..+||+|.-|..|..+-...+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999998876554 4678999999999999998888899999988
No 84
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=0.054 Score=50.53 Aligned_cols=44 Identities=30% Similarity=0.724 Sum_probs=32.6
Q ss_pred CCCccccccccccCCCceEEeCCCCcc-chHhHHHHHhcCCCCccccccccC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHF-HCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~F-H~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
++.-|+||++. +-....|+|+|.- +.+|-.. -+.||+||+-|.+
T Consensus 299 ~~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 299 TRRLCAICMDA---PRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHHhcC---CcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence 36789999998 4456899999964 4556433 4589999987754
No 85
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.41 E-value=0.11 Score=34.68 Aligned_cols=41 Identities=24% Similarity=0.647 Sum_probs=21.5
Q ss_pred cccccccccCCCceEEeCCCCccchHhHHHHHhcCC--CCccc
Q 020673 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA--TCPLC 307 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~--tCPlC 307 (323)
|.+|-+-...|+....-.|+=.+|..|+++.++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 455555555553322224888899999999998654 79987
No 86
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=89.81 E-value=0.27 Score=51.72 Aligned_cols=54 Identities=22% Similarity=0.569 Sum_probs=40.8
Q ss_pred CCCCCccccccccccCCCceEEeCCC-----CccchHhHHHHHhcC--CCCccccccccCCC
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYIN--ATCPLCKYNILKSS 315 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CId~WL~~~--~tCPlCR~~i~~~~ 315 (323)
.+++..|-||..+=..++++ --||+ -.-|.+|+-+|+.-+ ..|-+|++++.-++
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 45668999999886666554 34665 579999999999854 45999999876543
No 87
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.61 E-value=0.52 Score=45.12 Aligned_cols=47 Identities=34% Similarity=0.848 Sum_probs=35.7
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHH--HhcCCCCcccccc
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKW--LYINATCPLCKYN 310 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~W--L~~~~tCPlCR~~ 310 (323)
.++...|-||-.... ..-.+||+|..+--|--+- |-....||+||.+
T Consensus 58 DEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 345578999987743 3478999999888887553 4467889999975
No 88
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=0.25 Score=46.47 Aligned_cols=47 Identities=34% Similarity=0.674 Sum_probs=38.7
Q ss_pred CccccccccccCCC---ceEEeCCCCccchHhHHHHHhcC-CCCccccccc
Q 020673 265 AECCICLSAYDDGV---ELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNI 311 (323)
Q Consensus 265 ~~C~ICL~~y~~~~---~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i 311 (323)
.+|-||=++|..++ --|.|.|+|.|...|+.+-+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999998764 35677799999999999877654 5699999984
No 89
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.38 E-value=0.18 Score=45.28 Aligned_cols=40 Identities=25% Similarity=0.594 Sum_probs=29.3
Q ss_pred cccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccC
Q 020673 267 CCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
|-.|-+. +..+..|||+|+ ++..|=+. -.+||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 7777655 666889999976 77778554 4559999886543
No 90
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=0.27 Score=50.54 Aligned_cols=51 Identities=33% Similarity=0.855 Sum_probs=41.9
Q ss_pred CCCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCCc
Q 020673 260 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 317 (323)
Q Consensus 260 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~~ 317 (323)
+.+....|.||+.+. ..|..+|. |..|+.+|+..+..||+|...+..++..
T Consensus 475 l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred hhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccccc
Confidence 334567899999997 55788899 9999999999999999998877665443
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=86.85 E-value=0.35 Score=34.04 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=33.0
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
..|-.|... +..-..+||+|.-...|-+.+ +-+-||+|-.++...+
T Consensus 8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEcccc---ccccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence 345555544 333478999999999997763 5577999998886543
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.55 E-value=1.3 Score=43.04 Aligned_cols=28 Identities=25% Similarity=0.821 Sum_probs=21.3
Q ss_pred CCCccchHhHHHHHhc-------------CCCCcccccccc
Q 020673 285 CGHHFHCACVDKWLYI-------------NATCPLCKYNIL 312 (323)
Q Consensus 285 C~H~FH~~CId~WL~~-------------~~tCPlCR~~i~ 312 (323)
|.-..+.+|+.+|+-. +.+||.||+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4467788999999832 457999998754
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.52 E-value=0.35 Score=51.18 Aligned_cols=42 Identities=26% Similarity=0.720 Sum_probs=32.8
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i 311 (323)
..|..|--..+-+. .-.-|+|.||..|+. .....||-|+-+.
T Consensus 841 skCs~C~~~LdlP~--VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLPF--VHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccce--eeeecccHHHHHhhc---cCcccCCccchhh
Confidence 58999988866652 344599999999998 5567899998743
No 94
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=86.40 E-value=0.24 Score=46.65 Aligned_cols=44 Identities=27% Similarity=0.578 Sum_probs=30.0
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
.|--|=-. ..-.-|..||+|+|+.+|-.. ..-+.||+|-..|..
T Consensus 92 fCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 92 FCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred eecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence 45555333 333458899999999999654 335689999776643
No 95
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.87 E-value=0.39 Score=51.07 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=28.5
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHH
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 298 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL 298 (323)
..+..|.+|-..+... .-..-||+|.||.+||.+-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 3456899998887655 55678999999999998754
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.95 E-value=0.26 Score=50.62 Aligned_cols=44 Identities=34% Similarity=0.588 Sum_probs=34.0
Q ss_pred CccccccccccCCCc-eEEeCCCCccchHhHHHHHhcCCCCccccccc
Q 020673 265 AECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLYINATCPLCKYNI 311 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~-lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i 311 (323)
..|.||+..|..... -+-|-|+|.-+..|+.. ..|++|| |+++=
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~De 56 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRDE 56 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCccc
Confidence 569999999876653 34455999999999987 4578899 77653
No 97
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=84.38 E-value=1.8 Score=30.43 Aligned_cols=43 Identities=28% Similarity=0.739 Sum_probs=34.1
Q ss_pred CCccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCcc--cccc
Q 020673 264 DAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPL--CKYN 310 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPl--CR~~ 310 (323)
...|.+|-+.|.+++.+.+-| |+--+|.+|-++ ...|-. |..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 357999999999888888888 999999999554 556654 5443
No 98
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=84.13 E-value=0.47 Score=49.96 Aligned_cols=47 Identities=32% Similarity=0.650 Sum_probs=37.5
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhc--CCCCccccccccCCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNILKSS 315 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~i~~~~ 315 (323)
..|.||++ .+.....+|+|.|+.+|+.+=+.. +..||+||..+.+..
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 445578889999999999887754 356999998776543
No 99
>PF04641 Rtf2: Rtf2 RING-finger
Probab=83.73 E-value=1.3 Score=41.11 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=41.3
Q ss_pred CCCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
.....|+|...+|........| ||+|+|-..++++- +....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 3457899999999776666666 79999999999996 3456799998876643
No 100
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.61 E-value=0.82 Score=47.96 Aligned_cols=26 Identities=31% Similarity=0.708 Sum_probs=22.8
Q ss_pred EEeCCCCccchHhHHHHHhcCCCCcc
Q 020673 281 RELPCGHHFHCACVDKWLYINATCPL 306 (323)
Q Consensus 281 r~LPC~H~FH~~CId~WL~~~~tCPl 306 (323)
....|.|.-|..|..+|+.+...||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 34568999999999999999999984
No 101
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=82.29 E-value=0.32 Score=50.68 Aligned_cols=49 Identities=37% Similarity=0.649 Sum_probs=40.1
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcC---CCCccccccccCCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN---ATCPLCKYNILKSS 315 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~i~~~~ 315 (323)
..+|.||+..|.++ ..+.|.|.|...|+-.=+... ..||+|+..+.+.+
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS 72 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence 36899999999998 567899999999988766543 56999998776654
No 102
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=81.79 E-value=13 Score=30.09 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=18.2
Q ss_pred HHHhcCCCCccccccccCCCCcccc
Q 020673 296 KWLYINATCPLCKYNILKSSSNQDR 320 (323)
Q Consensus 296 ~WL~~~~tCPlCR~~i~~~~~~~~~ 320 (323)
+-+.+...|+.|++++.-..+....
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~legk 104 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPSLEGK 104 (114)
T ss_pred hhhchhhccCcCCCcCccCchhhcc
Confidence 3456677899999999876665543
No 103
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=81.79 E-value=0.47 Score=52.41 Aligned_cols=46 Identities=35% Similarity=0.806 Sum_probs=38.6
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccc
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i 311 (323)
-..|.||++...+.- ....|+|.+++.|...|+..+..||.|+...
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 358999999988432 4566999999999999999999999998644
No 104
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.29 E-value=0.9 Score=41.84 Aligned_cols=52 Identities=23% Similarity=0.647 Sum_probs=36.4
Q ss_pred CCCccccccccccCCCce-EEeCCC-----CccchHhHHHHHhcCC--------CCccccccccCC
Q 020673 263 EDAECCICLSAYDDGVEL-RELPCG-----HHFHCACVDKWLYINA--------TCPLCKYNILKS 314 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~l-r~LPC~-----H~FH~~CId~WL~~~~--------tCPlCR~~i~~~ 314 (323)
.+..|=||+..=+|+-.- =+-||. |=-|..|+..|...+. +||-|+.++...
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 346788999885554321 234764 8899999999996432 499999877543
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=79.94 E-value=1.3 Score=42.41 Aligned_cols=53 Identities=23% Similarity=0.552 Sum_probs=35.5
Q ss_pred CCCCccccccccccCCCc-eEEeCCCCccchHhHHHHHh-cCCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLY-INATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~-lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~~ 314 (323)
.|++-|+.|++++...|+ ..-.||+-..+.-|-..--+ .|..||-||+.+.+.
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 344559999999886653 33456786666666443222 478899999877543
No 106
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=78.52 E-value=1.4 Score=41.91 Aligned_cols=44 Identities=20% Similarity=0.604 Sum_probs=34.6
Q ss_pred CCCccccccccccCCCceEEeCCC--CccchHhHHHHHhcCCCCccccccccC
Q 020673 263 EDAECCICLSAYDDGVELRELPCG--HHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~--H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
+-.+|+||.+.+..+ ..-|+ |.-+..|=. +.+..||.||.++..
T Consensus 47 ~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 447999999998887 45575 777777754 567889999999883
No 107
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=75.75 E-value=0.98 Score=46.49 Aligned_cols=42 Identities=24% Similarity=0.607 Sum_probs=27.9
Q ss_pred CCccccccc-----cccCCCceEEeCCCCccchHhHHHHHhcCCCCcccc
Q 020673 264 DAECCICLS-----AYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 308 (323)
Q Consensus 264 d~~C~ICL~-----~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 308 (323)
...|-+|-. .|+.....+..-|++.||++|... .+..||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 356777722 244444455667999999999544 455599993
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.30 E-value=1.6 Score=41.02 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=22.3
Q ss_pred CCCccchHhHHHHH-------------hcCCCCccccccccC
Q 020673 285 CGHHFHCACVDKWL-------------YINATCPLCKYNILK 313 (323)
Q Consensus 285 C~H~FH~~CId~WL-------------~~~~tCPlCR~~i~~ 313 (323)
|.-..+.+|+.+|+ +.+.+||.||++..-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 44677889998887 346789999998653
No 109
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.15 E-value=2.3 Score=44.99 Aligned_cols=51 Identities=8% Similarity=0.008 Sum_probs=37.0
Q ss_pred CCccccccccccC-CCceEEeC---CCCccchHhHHHHHhc------CCCCccccccccCC
Q 020673 264 DAECCICLSAYDD-GVELRELP---CGHHFHCACVDKWLYI------NATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~-~~~lr~LP---C~H~FH~~CId~WL~~------~~tCPlCR~~i~~~ 314 (323)
...|.+|.-++.+ .|..-.+| |.|.|+-.||..|+.+ +-+||+|+..+...
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 3456666666655 33455667 9999999999999953 45699999877543
No 110
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=74.17 E-value=2.2 Score=39.63 Aligned_cols=47 Identities=26% Similarity=0.520 Sum_probs=36.2
Q ss_pred CccccccccccCCCceEEe---C-CCCccchHhHHHHHhc---------CCCCccccccc
Q 020673 265 AECCICLSAYDDGVELREL---P-CGHHFHCACVDKWLYI---------NATCPLCKYNI 311 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L---P-C~H~FH~~CId~WL~~---------~~tCPlCR~~i 311 (323)
.+|-+|.+++.+.++.+.. | |+-++|..|+..-+.. .+.||.|++-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 6899999999766666654 3 8889999999994432 45799998743
No 111
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=73.65 E-value=1.1 Score=40.87 Aligned_cols=50 Identities=32% Similarity=0.603 Sum_probs=37.6
Q ss_pred CCCcccccccc-ccCCC-ceEEeC-CCCccchHhHHHHHhcC-CCCc--ccccccc
Q 020673 263 EDAECCICLSA-YDDGV-ELRELP-CGHHFHCACVDKWLYIN-ATCP--LCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~-y~~~~-~lr~LP-C~H~FH~~CId~WL~~~-~tCP--lCR~~i~ 312 (323)
+|..|++|-.+ |-+++ .+-.-| |-|-.+..|+|+-+... +.|| -|-+.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 45689999976 55554 444457 99999999999999764 7799 7865443
No 112
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=73.57 E-value=1.7 Score=42.98 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=31.2
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI 300 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~ 300 (323)
|+..|+||..-|+++ ..|||+|..+..|-..=+..
T Consensus 3 eelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 457899999999998 89999999999999888754
No 113
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=70.67 E-value=3.9 Score=34.07 Aligned_cols=50 Identities=38% Similarity=0.775 Sum_probs=34.8
Q ss_pred CccccccccccCCCceEEe-C---CCCccchHhH-HHHH--hcCCCCccccccccCCCCc
Q 020673 265 AECCICLSAYDDGVELREL-P---CGHHFHCACV-DKWL--YINATCPLCKYNILKSSSN 317 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L-P---C~H~FH~~CI-d~WL--~~~~tCPlCR~~i~~~~~~ 317 (323)
.+|.||-+.-.|. |-| | |+-.-+-.|- .-|- ..++.||.||.+....+..
T Consensus 81 YeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~~ 137 (140)
T PF05290_consen 81 YECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSSA 137 (140)
T ss_pred eeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccccc
Confidence 6899999886665 344 3 7766666664 4454 3468899999988765544
No 114
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=66.33 E-value=4.1 Score=36.37 Aligned_cols=40 Identities=30% Similarity=0.664 Sum_probs=27.4
Q ss_pred Ccccccccc-----ccCCCceEEeCCCCccchHhHHHHHhcCCCCccccc
Q 020673 265 AECCICLSA-----YDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY 309 (323)
Q Consensus 265 ~~C~ICL~~-----y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 309 (323)
..|-+|-++ |+.+...+--.|+-.||..|.. +..||-|..
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 568888753 4443333334499999999966 267999954
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.79 E-value=4.7 Score=42.51 Aligned_cols=42 Identities=21% Similarity=0.484 Sum_probs=31.0
Q ss_pred CCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCcc
Q 020673 263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPL 306 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPl 306 (323)
..+.|++|-.....-+ ..-+ |+|.-|.+|+.+|+..+.-||.
T Consensus 778 a~~~CtVC~~vi~G~~--~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 778 ASAKCTVCDLVIRGVD--VWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hhcCceeecceeeeeE--eecccccccccHHHHHHHHhcCCCCcc
Confidence 3467999965543221 1223 9999999999999999988887
No 116
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=62.72 E-value=50 Score=31.06 Aligned_cols=103 Identities=19% Similarity=0.290 Sum_probs=57.0
Q ss_pred hhccCccccchhhHHHHHHH-------HHHHHHHhhhhhccC-CCCCCCChhhhHHHHhhhHHHHHhhhhhhhhhhcccc
Q 020673 18 ERQSDWAYSKPVVVLDIIWN-------LAFVAVAFSVMVLSQ-NERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRR 89 (323)
Q Consensus 18 ~~~~~~~~~~~~i~~~~~~~-------l~qiv~~i~vL~ls~-~E~p~~Pl~~WiigY~~~c~~~~~l~~~~~~~~~~~~ 89 (323)
-|-.||--+-|++.+.+-|. ++.++++..+...+- ---...-..-|. =|++++++++..++.-+-......
T Consensus 104 aRYIdWllttPllll~l~lla~~~~~ti~~~v~ad~~~iv~~laaa~~~~tykW~-~y~ig~~a~lvvl~~l~~~~~~~a 182 (285)
T COG5524 104 ARYIDWLLTTPLLLLYLGLLAGTSLWTIAGVVAADIIMIVTGLAAALTHSTYKWA-YYAIGAAAFLVVLAVLVTGFFAKA 182 (285)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhhchhhhHH-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence 35567888999999988653 344333322222111 000001112333 589999998887665553322211
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccccccccccchhhHHHhHHHHHHHHHHHHhhheeEEEec
Q 020673 90 VSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSA 152 (323)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~f~~~W~i~G~~wv~~ 152 (323)
++ +.+.+..-+.+.-+++.+.|+++-..|...
T Consensus 183 ~~-------------------------------~~~~v~~~F~~l~~~~vvLWl~YPivW~ig 214 (285)
T COG5524 183 KT-------------------------------RGTEVRSLFLTLRNYTVVLWLGYPIVWLIG 214 (285)
T ss_pred cc-------------------------------cchHHHHHHHHHHHHHHHHHHhccceeEEc
Confidence 11 112223345556677999999999999973
No 117
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.94 E-value=7 Score=38.26 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=36.4
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcC---CCCcccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN---ATCPLCK 308 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~---~tCPlCR 308 (323)
-.|+|=-+.=.++.....|+|+|+--++-+.+-.+.. ..||.|=
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 4788887777788888999999999999999966543 3599993
No 118
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.98 E-value=4 Score=43.24 Aligned_cols=42 Identities=26% Similarity=0.545 Sum_probs=32.4
Q ss_pred CccccccccccC-C---CceEEeCCCCccchHhHHHHHhcCCCCccc
Q 020673 265 AECCICLSAYDD-G---VELRELPCGHHFHCACVDKWLYINATCPLC 307 (323)
Q Consensus 265 ~~C~ICL~~y~~-~---~~lr~LPC~H~FH~~CId~WL~~~~tCPlC 307 (323)
..|+-|.+..-. + +.+..+.|+|.||+.|+..-..+++ |-.|
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 479999877542 2 4678889999999999988877776 6555
No 119
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.86 E-value=6.3 Score=39.47 Aligned_cols=37 Identities=38% Similarity=0.811 Sum_probs=31.6
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI 300 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~ 300 (323)
..+.+|-||.+.+.. .+..+.|+|.|...|...-+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 445789999999887 6677889999999999998864
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.51 E-value=5.2 Score=39.41 Aligned_cols=37 Identities=30% Similarity=0.674 Sum_probs=27.9
Q ss_pred CCccccccccccCC-CceEEeCCCCccchHhHHHHHhc
Q 020673 264 DAECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYI 300 (323)
Q Consensus 264 d~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CId~WL~~ 300 (323)
..+|.||..++... +....+.|.|.|+.+|+.+-...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 46899999555444 44445669999999999988864
No 122
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=53.22 E-value=4.1 Score=28.01 Aligned_cols=42 Identities=21% Similarity=0.456 Sum_probs=20.3
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhcCC-----CCcccccc
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-----TCPLCKYN 310 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~-----tCPlCR~~ 310 (323)
.|+|....++.+ +|--.|.|.-. -=++.||+.+. .||+|+++
T Consensus 4 ~CPls~~~i~~P--~Rg~~C~H~~C-FDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIP--VRGKNCKHLQC-FDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSE--EEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeC--ccCCcCcccce-ECHHHHHHHhhccCCeECcCCcCc
Confidence 577777776553 57777998732 22456775432 49999864
No 123
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=51.03 E-value=7.5 Score=27.82 Aligned_cols=15 Identities=33% Similarity=0.944 Sum_probs=11.8
Q ss_pred CCCCccccccccCCC
Q 020673 301 NATCPLCKYNILKSS 315 (323)
Q Consensus 301 ~~tCPlCR~~i~~~~ 315 (323)
..+||+|+++...+.
T Consensus 39 ~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGT 53 (59)
T ss_pred CccCCCcCCccccce
Confidence 367999999887654
No 124
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=47.82 E-value=20 Score=21.91 Aligned_cols=36 Identities=22% Similarity=0.517 Sum_probs=22.9
Q ss_pred cccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccc
Q 020673 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i 311 (323)
|..|-..+.+++.... .=+..||.+| ..|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~-~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLR-ALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEE-eCCccccccC--------CCCcccCCcC
Confidence 6777777766633222 2367899876 4577777665
No 125
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=45.76 E-value=13 Score=26.54 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=11.6
Q ss_pred CCCCccccccccCCCC
Q 020673 301 NATCPLCKYNILKSSS 316 (323)
Q Consensus 301 ~~tCPlCR~~i~~~~~ 316 (323)
+..||+||..+..++.
T Consensus 2 k~~CPlCkt~~n~gsk 17 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSK 17 (61)
T ss_pred CccCCcccchhhcCCC
Confidence 5679999988755443
No 126
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=44.80 E-value=11 Score=34.03 Aligned_cols=41 Identities=27% Similarity=0.753 Sum_probs=33.3
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 307 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlC 307 (323)
..|.+|-+-.-.+ +|.=.|+-.+|..|+.+.+.....||.|
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCch
Confidence 5899997764444 2444588889999999999999999999
No 127
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=43.80 E-value=22 Score=26.48 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.9
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhh
Q 020673 24 AYSKPVVVLDIIWNLAFVAVAFSVMV 49 (323)
Q Consensus 24 ~~~~~~i~~~~~~~l~qiv~~i~vL~ 49 (323)
-|++||+ +|-++++++.+.||.
T Consensus 32 Vy~~P~m----A~~laeliav~lVl~ 53 (80)
T TIGR02741 32 VYRKPWM----AFFLAELIAVILVLW 53 (80)
T ss_pred HHcChHH----HHHHHHHHHHHHHHh
Confidence 4888875 577889888887775
No 128
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=42.80 E-value=23 Score=26.45 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=17.1
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhh
Q 020673 24 AYSKPVVVLDIIWNLAFVAVAFSVMV 49 (323)
Q Consensus 24 ~~~~~~i~~~~~~~l~qiv~~i~vL~ 49 (323)
-|++||+ +|-+++|++.+.||.
T Consensus 32 Vy~~Pem----A~~laeiiav~lVl~ 53 (80)
T PRK13727 32 VYSKPWM----AFFLAELIAAILVLF 53 (80)
T ss_pred HHcChHH----HHHHHHHHHHHHHhh
Confidence 4888874 578899988887775
No 129
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=41.87 E-value=22 Score=33.52 Aligned_cols=43 Identities=30% Similarity=0.559 Sum_probs=31.3
Q ss_pred cccCCCc-eEEeCCCCccchHhHHHHHhcC-CCCccccccccCCC
Q 020673 273 AYDDGVE-LRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKSS 315 (323)
Q Consensus 273 ~y~~~~~-lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~~~ 315 (323)
.|-+++- +..=||+|..+.+|+|.-+..+ ..||-|-..+.++.
T Consensus 10 ~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 10 RYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred eecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 3445542 2333799999999999988765 77999987766543
No 130
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=41.74 E-value=11 Score=25.36 Aligned_cols=43 Identities=28% Similarity=0.573 Sum_probs=27.0
Q ss_pred cccccccccCCCceEEeCCCCccchHhHHHHHhc------CCCCccccc
Q 020673 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYI------NATCPLCKY 309 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~ 309 (323)
|.||-..-.+++.+.--.|+..||..|++.=... .-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 7888884333333333348899999998765431 235888753
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.40 E-value=24 Score=33.80 Aligned_cols=52 Identities=23% Similarity=0.499 Sum_probs=37.0
Q ss_pred CccccccccccCCCceEEeC--CCCccchHhHHHHHhcCCCCccccccccCCCCc
Q 020673 265 AECCICLSAYDDGVELRELP--CGHHFHCACVDKWLYINATCPLCKYNILKSSSN 317 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LP--C~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~~ 317 (323)
..|+||-+..... ..-.+| |+|.-|..|...=...+.+||.||++...+...
T Consensus 250 ~s~p~~~~~~~~~-d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~ 303 (327)
T KOG2068|consen 250 PSCPICYEDLDLT-DSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKK 303 (327)
T ss_pred CCCCCCCCccccc-ccccccccccccchhhhhhcccccCCCCCccCCccccCccc
Confidence 6899998876322 234566 667777777777667789999999888765543
No 132
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.15 E-value=54 Score=31.87 Aligned_cols=15 Identities=27% Similarity=0.997 Sum_probs=12.1
Q ss_pred HHHHHHhhhe---eEEEe
Q 020673 137 MFSFIWWIIG---FYWVS 151 (323)
Q Consensus 137 ~f~~~W~i~G---~~wv~ 151 (323)
+|..+|.++| .+|+|
T Consensus 242 LF~I~~il~~g~~g~W~F 259 (372)
T KOG2927|consen 242 LFGITWILTGGKHGFWLF 259 (372)
T ss_pred HHHHHHHHhCCCCceEec
Confidence 5888999998 46887
No 133
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=39.80 E-value=34 Score=22.00 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=18.1
Q ss_pred cccchhhHHHHHHHHHHHHHHhhh
Q 020673 24 AYSKPVVVLDIIWNLAFVAVAFSV 47 (323)
Q Consensus 24 ~~~~~~i~~~~~~~l~qiv~~i~v 47 (323)
+|.|-|+..-++.-++||+.....
T Consensus 11 aYEr~Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 11 AYERGWIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 688999998888888877654433
No 134
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.16 E-value=14 Score=36.30 Aligned_cols=44 Identities=25% Similarity=0.578 Sum_probs=33.5
Q ss_pred CccccccccccCCCceEEeC--CCCccchHhHHHHHhcCCCCcccc
Q 020673 265 AECCICLSAYDDGVELRELP--CGHHFHCACVDKWLYINATCPLCK 308 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LP--C~H~FH~~CId~WL~~~~tCPlCR 308 (323)
..|++|-..++-.+....+. |+|.|...|-..|...+..|..|-
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~ 352 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECC 352 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCcc
Confidence 57888887776555433333 889999999999999998886663
No 135
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=38.62 E-value=15 Score=23.39 Aligned_cols=25 Identities=36% Similarity=0.712 Sum_probs=15.9
Q ss_pred ccccccccccCCCc--------eEEeCCCCccc
Q 020673 266 ECCICLSAYDDGVE--------LRELPCGHHFH 290 (323)
Q Consensus 266 ~C~ICL~~y~~~~~--------lr~LPC~H~FH 290 (323)
+|+=|-..|+-+|+ ++--.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888875553 33334667764
No 136
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.81 E-value=45 Score=27.45 Aligned_cols=8 Identities=50% Similarity=0.484 Sum_probs=3.3
Q ss_pred hHHHHHHH
Q 020673 169 IIFLGFDV 176 (323)
Q Consensus 169 ivfL~f~v 176 (323)
++.++|++
T Consensus 66 i~~Ii~gv 73 (122)
T PF01102_consen 66 IIGIIFGV 73 (122)
T ss_dssp HHHHHHHH
T ss_pred eeehhHHH
Confidence 34444444
No 137
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=37.33 E-value=40 Score=32.26 Aligned_cols=50 Identities=30% Similarity=0.596 Sum_probs=34.9
Q ss_pred CCcccccccccc--------------CCC--ceEEeCCCCccchHhHHHHHhc---------CCCCccccccccC
Q 020673 264 DAECCICLSAYD--------------DGV--ELRELPCGHHFHCACVDKWLYI---------NATCPLCKYNILK 313 (323)
Q Consensus 264 d~~C~ICL~~y~--------------~~~--~lr~LPC~H~FH~~CId~WL~~---------~~tCPlCR~~i~~ 313 (323)
+.+|++|+..=. |.- .-.--||+|.--.+-..-|-++ ++.||.|-..+..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 578999996511 111 1123589999999999999865 4569999877654
No 138
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=35.72 E-value=1.9e+02 Score=24.74 Aligned_cols=28 Identities=29% Similarity=0.641 Sum_probs=17.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 020673 165 YWLCIIFLGFDVFFVVFCVALACIIGIAV 193 (323)
Q Consensus 165 y~L~ivfL~f~v~fvv~~v~l~~li~i~l 193 (323)
|.++++|..|+.... +.+++...+|..+
T Consensus 110 Y~LMLifMtfN~~l~-Lavv~Ga~~G~fl 137 (155)
T KOG3386|consen 110 YLLMLIFMTFNGYLF-LAVVLGAGVGYFL 137 (155)
T ss_pred HHHHHHHhhhhhHHH-HHHHHHHhhhhhe
Confidence 899999999996433 2333444444444
No 139
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=35.52 E-value=41 Score=35.82 Aligned_cols=47 Identities=28% Similarity=0.575 Sum_probs=29.9
Q ss_pred CCCCcccccccccc----CCC----c-eEEeC-CCCccchHhHHHHHhcCCCCcccccccc
Q 020673 262 NEDAECCICLSAYD----DGV----E-LRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 262 ~ed~~C~ICL~~y~----~~~----~-lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
..+..|+-|-.+|- .|. . .=.-| |+|.-|..=|.+ ..+||+|.+.+.
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 44567777776653 121 1 22335 999988865544 688999987654
No 140
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=35.37 E-value=13 Score=25.64 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=6.3
Q ss_pred CCCccccccccC
Q 020673 302 ATCPLCKYNILK 313 (323)
Q Consensus 302 ~tCPlCR~~i~~ 313 (323)
..||+|.+++..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 479999998864
No 141
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=34.91 E-value=37 Score=36.71 Aligned_cols=28 Identities=25% Similarity=0.853 Sum_probs=15.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 020673 165 YWLCIIFLGFDVFFVVFCVALACIIGIAVCCC 196 (323)
Q Consensus 165 y~L~ivfL~f~v~fvv~~v~l~~li~i~lCcc 196 (323)
|+..+++.+++++| ++++.++++.+|||
T Consensus 90 ~~g~~v~~~i~ll~----~il~P~vg~~fCcC 117 (806)
T PF05478_consen 90 EWGFLVCAVIGLLF----IILMPLVGLCFCCC 117 (806)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 34445555544433 33456667778887
No 142
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=34.61 E-value=25 Score=21.08 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=10.7
Q ss_pred ccccccccccCCCceEEeCCCCccchHhH
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACV 294 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CI 294 (323)
.|.+|-.+...+...+-..|+-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47778777666344555669999999985
No 143
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=33.23 E-value=24 Score=32.31 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=24.3
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHh
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLY 299 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~ 299 (323)
.|.-|-.. .+++....+.|.|+|+..|...=..
T Consensus 5 hCn~C~~~-~~~~~f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 5 HCNKCFRF-PSQDPFFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred Eecccccc-CCCCceeeeechhhhhhhhcccCCc
Confidence 46555433 3488899999999999999876554
No 144
>PRK05978 hypothetical protein; Provisional
Probab=32.78 E-value=24 Score=30.04 Aligned_cols=25 Identities=24% Similarity=0.596 Sum_probs=20.4
Q ss_pred CC--CccchHhHHHHHhcCCCCccccccccCC
Q 020673 285 CG--HHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 285 C~--H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
|+ |.|+ .+|+.+.+||.|-.++...
T Consensus 39 CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 39 CGEGKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred CCCCcccc-----cccccCCCccccCCccccC
Confidence 65 7786 6899999999998877654
No 145
>COG3671 Predicted membrane protein [Function unknown]
Probab=32.66 E-value=84 Score=25.76 Aligned_cols=45 Identities=11% Similarity=0.438 Sum_probs=23.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHh
Q 020673 165 YWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVAD 209 (323)
Q Consensus 165 y~L~ivfL~f~v~fvv~~v~l~~li~i~lCcclp~ii~~l~~~~~ 209 (323)
+|+++.+-..++.+..+++.++.++.+.+=..+.+.+.+.|..++
T Consensus 70 Fw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~Riv~G~~yl~~g 114 (125)
T COG3671 70 FWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYRIVIGFKYLNEG 114 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 677776666666565555555554444443333444444444443
No 146
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=32.58 E-value=30 Score=24.01 Aligned_cols=41 Identities=32% Similarity=0.790 Sum_probs=19.8
Q ss_pred cccccccccCCC------ceEEeC-CCCccchHhHHHHHh-cCCCCcccc
Q 020673 267 CCICLSAYDDGV------ELRELP-CGHHFHCACVDKWLY-INATCPLCK 308 (323)
Q Consensus 267 C~ICL~~y~~~~------~lr~LP-C~H~FH~~CId~WL~-~~~tCPlCR 308 (323)
|--|+..|.++. ....-| |+++|..+| |-... .=.+||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 445666666542 234445 999999999 44332 336799884
No 147
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=32.13 E-value=87 Score=26.11 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=23.5
Q ss_pred ccchhhHHHhHHHHHHHHHHHHhhheeEE
Q 020673 121 EEEGTSVAKHLESANTMFSFIWWIIGFYW 149 (323)
Q Consensus 121 ~~~~~~~~~~l~~~l~~f~~~W~i~G~~w 149 (323)
+...+.+++.+-++...|+++||..+..|
T Consensus 76 ~~qls~v~Nilvsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 76 KRQLSTVFNILVSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999998877444
No 148
>PRK11827 hypothetical protein; Provisional
Probab=31.88 E-value=18 Score=26.04 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=14.7
Q ss_pred HHHHhcCCCCccccccccCC
Q 020673 295 DKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 295 d~WL~~~~tCPlCR~~i~~~ 314 (323)
++||..--.||.||.++...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 56777777799998887653
No 149
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=30.36 E-value=31 Score=25.25 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=8.8
Q ss_pred ccchHhHHHHHh
Q 020673 288 HFHCACVDKWLY 299 (323)
Q Consensus 288 ~FH~~CId~WL~ 299 (323)
-|+..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 150
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=29.31 E-value=77 Score=21.37 Aligned_cols=6 Identities=50% Similarity=1.486 Sum_probs=2.2
Q ss_pred HHHHHH
Q 020673 182 CVALAC 187 (323)
Q Consensus 182 ~v~l~~ 187 (323)
|..++|
T Consensus 41 cllli~ 46 (52)
T TIGR01294 41 CLLLIC 46 (52)
T ss_pred HHHHHH
Confidence 333333
No 151
>PF15431 TMEM190: Transmembrane protein 190
Probab=29.13 E-value=53 Score=26.53 Aligned_cols=31 Identities=23% Similarity=0.721 Sum_probs=23.3
Q ss_pred CCCCCCCChh---hhHHHHhhhHHHHHhhhhhhh
Q 020673 52 QNERPNMPLR---LWIVGYAIQCVLHMVCVCVEY 82 (323)
Q Consensus 52 ~~E~p~~Pl~---~WiigY~~~c~~~~~l~~~~~ 82 (323)
.+.+|+.-+| .|.+|++++.++.+.+...-|
T Consensus 48 YhQRpDEnmrrKHmWaL~wtC~gll~Li~~iclF 81 (134)
T PF15431_consen 48 YHQRPDENMRRKHMWALGWTCGGLLLLICSICLF 81 (134)
T ss_pred eccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3567776665 899999999999888654444
No 152
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=28.75 E-value=1.2e+02 Score=26.21 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhheeEEEecCCCC---CCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 020673 132 ESANTMFSFIWWIIGFYWVSAGGQA---LARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAV 193 (323)
Q Consensus 132 ~~~l~~f~~~W~i~G~~wv~~~~~~---~~~~~p~ly~L~ivfL~f~v~fvv~~v~l~~li~i~l 193 (323)
++++.+.-.+-.+.+.+|..+.... +..+.| .+.+..+.+.-..++.++.-++.++..+++
T Consensus 76 ~iilglivvvlvi~~liwa~~~~a~~krmr~~hp-~~~l~gvllv~yfli~v~~~vlv~~F~il~ 139 (188)
T KOG4050|consen 76 DIILGLIVVVLVIGTLIWAASADANIKRMRTDHP-LVTLAGVLLVGYFLISVFGGVLVFAFAILF 139 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444457788754432 344555 366666666555556666666666666544
No 153
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.29 E-value=1.4e+02 Score=27.85 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=36.4
Q ss_pred CCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 264 DAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
...|+|=--++.....--.| +|+|+|-..-+.+- ...+|++|...+...+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 35799887777777655555 59999998776652 3578999998776543
No 154
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=28.21 E-value=1.3e+02 Score=21.77 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhhhccCCCCCCC---ChhhhHHHHhhhHHHHHhhhhhhh
Q 020673 37 NLAFVAVAFSVMVLSQNERPNM---PLRLWIVGYAIQCVLHMVCVCVEY 82 (323)
Q Consensus 37 ~l~qiv~~i~vL~ls~~E~p~~---Pl~~WiigY~~~c~~~~~l~~~~~ 82 (323)
.++.++++++++-....+++.. .-...++|+.+-.+..+.+++..+
T Consensus 17 ~l~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (73)
T PF02656_consen 17 ALALVGVGLALLRFFSLDHPSSSASRRVSKVLGLLLIVLGLLTLIYGIY 65 (73)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777765544422 233556666666555555554433
No 155
>PHA02898 virion envelope protein; Provisional
Probab=28.05 E-value=1.7e+02 Score=22.66 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=30.3
Q ss_pred hhhccCCCCC-CCChh-hhHHHHhhhHHHHHhhh-hhhhhhhcc
Q 020673 47 VMVLSQNERP-NMPLR-LWIVGYAIQCVLHMVCV-CVEYKRRSR 87 (323)
Q Consensus 47 vL~ls~~E~p-~~Pl~-~WiigY~~~c~~~~~l~-~~~~~~~~~ 87 (323)
..-+||++.| +.++| +=++.+.+|-++.+.++ +.-|+|+.+
T Consensus 30 fidfSK~~~~~~~~wRalSii~FIlgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 30 YIELSKSEKPADSALRSISIISFILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred eehhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3457899999 77777 44788999999999975 555555554
No 156
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=27.76 E-value=47 Score=31.78 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=32.0
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhc---CCCCccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLC 307 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~---~~tCPlC 307 (323)
-.|++=-+.-.+......|.|+|+--++-++.--+. ...||.|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 467775555556667788999999999999985443 2349999
No 157
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.53 E-value=71 Score=25.90 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=30.6
Q ss_pred CccccccccccCCC-----------ceEEeCCCCccchHhHHHHHhcCCCCcccc
Q 020673 265 AECCICLSAYDDGV-----------ELRELPCGHHFHCACVDKWLYINATCPLCK 308 (323)
Q Consensus 265 ~~C~ICL~~y~~~~-----------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 308 (323)
..|--|+..|.+.. ..+--.|+++|..+|=.-+-+.=.+||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45888888876431 112234999999999666666667799996
No 158
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=27.02 E-value=58 Score=25.56 Aligned_cols=31 Identities=29% Similarity=0.681 Sum_probs=21.9
Q ss_pred CCccccccccccCCCceEEeC--CCCccchHhHHH
Q 020673 264 DAECCICLSAYDDGVELRELP--CGHHFHCACVDK 296 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LP--C~H~FH~~CId~ 296 (323)
...|.||-.. .|.-++--- |+..||..|..+
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 4689999887 443333333 778999999866
No 159
>PF13061 DUF3923: Protein of unknown function (DUF3923)
Probab=26.61 E-value=1.2e+02 Score=22.13 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhccCCC--CCCCC------hhhhHHHHhhhHHHHHh
Q 020673 27 KPVVVLDIIWNLAFVAVAFSVMVLSQNE--RPNMP------LRLWIVGYAIQCVLHMV 76 (323)
Q Consensus 27 ~~~i~~~~~~~l~qiv~~i~vL~ls~~E--~p~~P------l~~WiigY~~~c~~~~~ 76 (323)
|.|.....+|.+.|+..++.+..-+.|- .-|+| |-+|.+.|..--+..+.
T Consensus 2 k~w~i~ni~~lilf~~~a~~I~~R~vDgaGv~qT~~~k~itl~vl~i~~~~i~i~q~I 59 (66)
T PF13061_consen 2 KFWWIFNIIWLILFLIVAIFIWLRKVDGAGVVQTPELKLITLAVLGIFFIIILIIQLI 59 (66)
T ss_pred eEEEehHHHHHHHHHHHHHHheeeeccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788999999999999999988763 34566 56777777666555554
No 160
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=26.59 E-value=66 Score=26.32 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=16.9
Q ss_pred CcchhhhhhhHhhhhhhccCcccc
Q 020673 3 EPSMMVRETAAEQLEERQSDWAYS 26 (323)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (323)
++++.++--+--+..++.+||+.|
T Consensus 4 ~rdv~~~~~dss~~~~~y~~~~~s 27 (124)
T KOG4753|consen 4 ERDVGVGTRDSSRTSMAYSDHAFS 27 (124)
T ss_pred cCcCceeccCCCccchhhcccccc
Confidence 566777766666677778888765
No 161
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=26.47 E-value=45 Score=20.56 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=6.9
Q ss_pred cCCCCccccc
Q 020673 300 INATCPLCKY 309 (323)
Q Consensus 300 ~~~tCPlCR~ 309 (323)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3457898865
No 162
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=25.54 E-value=13 Score=35.08 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=31.5
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhcCC
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA 302 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~ 302 (323)
+|.+|.++|+.+.....+-|.-.||..|+-.|+...+
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 8999999998766667777777999999999998753
No 163
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=25.36 E-value=36 Score=20.35 Aligned_cols=16 Identities=50% Similarity=0.584 Sum_probs=12.4
Q ss_pred CCcchhhhhhhHhhhh
Q 020673 2 REPSMMVRETAAEQLE 17 (323)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (323)
..|+-.||++|++-+-
T Consensus 10 ~D~~~~VR~~a~~~l~ 25 (31)
T PF02985_consen 10 NDPSPEVRQAAAECLG 25 (31)
T ss_dssp T-SSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5688899999998764
No 164
>PRK10633 hypothetical protein; Provisional
Probab=24.91 E-value=3.1e+02 Score=20.82 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHhhheeE
Q 020673 130 HLESANTMFSFIWWIIGFY 148 (323)
Q Consensus 130 ~l~~~l~~f~~~W~i~G~~ 148 (323)
+.-..++++.++||.++-|
T Consensus 13 ~~al~L~l~y~~~W~~~aY 31 (80)
T PRK10633 13 RWALGLTLLYLAAWLVAAY 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455778888888887644
No 165
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=24.76 E-value=28 Score=20.89 Aligned_cols=14 Identities=29% Similarity=0.971 Sum_probs=7.3
Q ss_pred CCccccccccCCCC
Q 020673 303 TCPLCKYNILKSSS 316 (323)
Q Consensus 303 tCPlCR~~i~~~~~ 316 (323)
+||.|.+.+.....
T Consensus 1 ~CP~C~s~l~~~~~ 14 (28)
T PF03119_consen 1 TCPVCGSKLVREEG 14 (28)
T ss_dssp B-TTT--BEEE-CC
T ss_pred CcCCCCCEeEcCCC
Confidence 49999998885433
No 166
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.46 E-value=1.8e+02 Score=21.83 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=14.6
Q ss_pred HHHHHHH--hccCCCHHHHhhcccce
Q 020673 202 AILYAVA--DQEGASKEDIERLSKFK 225 (323)
Q Consensus 202 ~~l~~~~--~~~g~s~~~i~~Lp~~~ 225 (323)
.+.|..+ ..+|+++++.+.|....
T Consensus 23 ~lHY~sk~~~~~gLs~~d~~~L~~L~ 48 (75)
T PF06667_consen 23 ILHYRSKWKSSQGLSEEDEQRLQELY 48 (75)
T ss_pred HHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 3444433 34689998887765443
No 167
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.35 E-value=41 Score=19.85 Aligned_cols=8 Identities=50% Similarity=1.364 Sum_probs=3.8
Q ss_pred CCCccccc
Q 020673 302 ATCPLCKY 309 (323)
Q Consensus 302 ~tCPlCR~ 309 (323)
..||.|-+
T Consensus 15 ~~Cp~CG~ 22 (26)
T PF10571_consen 15 KFCPHCGY 22 (26)
T ss_pred CcCCCCCC
Confidence 44555543
No 168
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.32 E-value=19 Score=30.08 Aligned_cols=49 Identities=29% Similarity=0.605 Sum_probs=28.2
Q ss_pred CCCCCcccccccc-ccCCCceEEeCCCCccchHhHHHHHhc-CC---CCccccc
Q 020673 261 SNEDAECCICLSA-YDDGVELRELPCGHHFHCACVDKWLYI-NA---TCPLCKY 309 (323)
Q Consensus 261 ~~ed~~C~ICL~~-y~~~~~lr~LPC~H~FH~~CId~WL~~-~~---tCPlCR~ 309 (323)
..+|+.|.||+.. |.|+-.-..--|.--|+..|-.+--.+ |. .|-+|+.
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred cCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 3567999999964 777732222334445555565443322 32 3888865
No 169
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=24.04 E-value=52 Score=30.72 Aligned_cols=18 Identities=39% Similarity=0.838 Sum_probs=15.1
Q ss_pred ccchHhHHHHHhc-CCCCc
Q 020673 288 HFHCACVDKWLYI-NATCP 305 (323)
Q Consensus 288 ~FH~~CId~WL~~-~~tCP 305 (323)
-=|++|..+|-.+ |..||
T Consensus 56 RGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 56 RGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred cchHHHHHHHHHHHcCCCC
Confidence 3589999999765 88999
No 170
>PF13239 2TM: 2TM domain
Probab=23.61 E-value=1.2e+02 Score=22.65 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=16.4
Q ss_pred CCCCChhhh-HHHHhhhHHHHHhhhh
Q 020673 55 RPNMPLRLW-IVGYAIQCVLHMVCVC 79 (323)
Q Consensus 55 ~p~~Pl~~W-iigY~~~c~~~~~l~~ 79 (323)
.|..|-.+| ++|.+++-++|..-++
T Consensus 37 ~~~~~W~~~~~~~Wgi~L~~h~~~vf 62 (83)
T PF13239_consen 37 GPGYFWPLWPILGWGIGLAIHALKVF 62 (83)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 444443445 5688888888887665
No 171
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=23.58 E-value=1.1e+02 Score=25.01 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=21.0
Q ss_pred hhccCCCCCCCChhhhHHHHhhhHHHHHhhhhhhhhh
Q 020673 48 MVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKR 84 (323)
Q Consensus 48 L~ls~~E~p~~Pl~~WiigY~~~c~~~~~l~~~~~~~ 84 (323)
.+.-..-.|..|+.+.+++=.+-+..+..++.+.||+
T Consensus 48 ~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~WYR~ 84 (118)
T PF10856_consen 48 SAFVFPQDPPKPLHIFFAVCILLICISAILLIFWYRQ 84 (118)
T ss_pred heEEecCCCCCceEEehHHHHHHHHHHHHhheeehhc
Confidence 3444556667777776665555444444455555654
No 172
>PRK02935 hypothetical protein; Provisional
Probab=23.39 E-value=2.1e+02 Score=22.94 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=16.4
Q ss_pred HHhcCCCCccccccccCCCCcccc
Q 020673 297 WLYINATCPLCKYNILKSSSNQDR 320 (323)
Q Consensus 297 WL~~~~tCPlCR~~i~~~~~~~~~ 320 (323)
-|-+-..|..|++++.-..+..++
T Consensus 82 mLGrvD~CM~C~~PLTLd~~legk 105 (110)
T PRK02935 82 MLGRVDACMHCNQPLTLDRSLEGK 105 (110)
T ss_pred hccceeecCcCCCcCCcCcccccc
Confidence 345566799999988766555543
No 173
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=23.19 E-value=48 Score=22.80 Aligned_cols=22 Identities=32% Similarity=0.890 Sum_probs=13.5
Q ss_pred CCCccchHhHHHHHhcCCCCccc
Q 020673 285 CGHHFHCACVDKWLYINATCPLC 307 (323)
Q Consensus 285 C~H~FH~~CId~WL~~~~tCPlC 307 (323)
|+|.|... |..-......||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 66666654 33333567779988
No 174
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=23.17 E-value=68 Score=21.69 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=24.6
Q ss_pred cccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
|.-|-..+.+++.+ ...-+..||.+| .+|=.|+.++..+.
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEccc--------cccCCCCCccCCCe
Confidence 55566666655432 224667788766 45788887776553
No 175
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=22.27 E-value=42 Score=25.59 Aligned_cols=13 Identities=38% Similarity=0.777 Sum_probs=1.0
Q ss_pred hhhhhhhhhcccc
Q 020673 77 CVCVEYKRRSRRR 89 (323)
Q Consensus 77 l~~~~~~~~~~~~ 89 (323)
++|.+|++..+++
T Consensus 25 iv~ieYrk~~rqr 37 (81)
T PF00558_consen 25 IVYIEYRKIKRQR 37 (81)
T ss_dssp HH-----------
T ss_pred HHHHHHHHHHHHH
Confidence 3577777655543
No 176
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=22.23 E-value=31 Score=39.65 Aligned_cols=51 Identities=27% Similarity=0.398 Sum_probs=39.4
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccc
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNI 311 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i 311 (323)
+.....|-+|+....+.+.+...-|.-.||..|++.=+..- =.||-|+..-
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34567899999998887555455577899999999988653 3599998765
No 177
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=20.57 E-value=33 Score=33.77 Aligned_cols=50 Identities=26% Similarity=0.501 Sum_probs=0.0
Q ss_pred CCccccccccc--------------cCCC--ceEEeCCCCccchHhHHHHHhc---------CCCCccccccccC
Q 020673 264 DAECCICLSAY--------------DDGV--ELRELPCGHHFHCACVDKWLYI---------NATCPLCKYNILK 313 (323)
Q Consensus 264 d~~C~ICL~~y--------------~~~~--~lr~LPC~H~FH~~CId~WL~~---------~~tCPlCR~~i~~ 313 (323)
+.+|++|+..- .|.. ...--||+|.--.+...-|-+. ++.||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 57899999652 1211 1224589999999999999864 3579999887753
No 178
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=20.34 E-value=54 Score=30.09 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=30.8
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCC--Cc
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINAT--CP 305 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~t--CP 305 (323)
+..|+|=|..+.-+ +.-..|+|.|-.+-|.+-|+.-.| ||
T Consensus 189 ~nrCpitl~p~~~p--ils~kcnh~~e~D~I~~~lq~~~trvcp 230 (275)
T COG5627 189 SNRCPITLNPDFYP--ILSSKCNHKPEMDLINKKLQVECTRVCP 230 (275)
T ss_pred cccCCcccCcchhH--HHHhhhcccccHHHHHHHhcCCceeecc
Confidence 46899999887665 233459999999999998886554 55
Done!