Query 020673
Match_columns 323
No_of_seqs 280 out of 1784
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:31:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 5.5E-18 1.9E-22 131.4 5.7 77 209-313 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 7.7E-18 2.6E-22 125.6 2.6 53 263-315 22-74 (75)
3 2ep4_A Ring finger protein 24; 99.6 1.1E-15 3.9E-20 113.3 6.5 56 262-317 13-68 (74)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.4E-15 4.9E-20 111.2 6.6 56 261-316 11-66 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.6 5.5E-16 1.9E-20 108.3 4.0 50 263-312 4-54 (55)
6 2ect_A Ring finger protein 126 99.6 2E-15 7E-20 113.0 6.2 57 261-317 12-68 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 4.2E-15 1.4E-19 112.6 4.2 52 262-313 13-76 (81)
8 2ecm_A Ring finger and CHY zin 99.5 1.7E-14 5.9E-19 100.5 4.8 50 263-312 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 1.9E-14 6.5E-19 115.5 5.5 56 263-318 24-99 (114)
10 2d8s_A Cellular modulator of i 99.5 2.9E-14 1E-18 107.9 5.0 54 261-315 12-72 (80)
11 2ea6_A Ring finger protein 4; 99.5 4.2E-14 1.4E-18 102.9 5.2 52 262-313 13-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.5 4.4E-14 1.5E-18 112.5 5.0 51 262-312 35-100 (106)
13 3ng2_A RNF4, snurf, ring finge 99.4 4E-14 1.4E-18 103.8 3.4 54 262-315 8-65 (71)
14 2xeu_A Ring finger protein 4; 99.4 5.4E-14 1.9E-18 100.7 3.4 53 263-315 2-58 (64)
15 2ecn_A Ring finger protein 141 99.4 1.5E-13 5.1E-18 100.6 3.5 51 262-316 13-63 (70)
16 1chc_A Equine herpes virus-1 r 99.4 1.8E-13 6.1E-18 99.5 3.9 50 262-313 3-52 (68)
17 2d8t_A Dactylidin, ring finger 99.4 2.2E-13 7.6E-18 100.2 3.8 49 262-313 13-61 (71)
18 2djb_A Polycomb group ring fin 99.4 8.3E-13 2.8E-17 97.3 6.6 52 262-316 13-65 (72)
19 2yur_A Retinoblastoma-binding 99.3 1E-12 3.4E-17 97.5 6.1 54 261-317 12-68 (74)
20 2ct2_A Tripartite motif protei 99.3 1.7E-12 5.7E-17 98.9 6.7 53 262-314 13-69 (88)
21 4a0k_B E3 ubiquitin-protein li 99.3 1.4E-13 4.9E-18 111.3 0.6 51 262-312 46-111 (117)
22 2ysl_A Tripartite motif-contai 99.3 1.7E-12 5.8E-17 95.6 6.0 51 261-314 17-70 (73)
23 2csy_A Zinc finger protein 183 99.3 1.5E-12 5.2E-17 98.1 5.2 48 262-312 13-60 (81)
24 2ecy_A TNF receptor-associated 99.3 2.6E-12 9E-17 93.0 5.2 50 262-314 13-63 (66)
25 2ysj_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 88.5 6.6 44 261-307 17-63 (63)
26 4ayc_A E3 ubiquitin-protein li 99.2 2.1E-12 7E-17 107.4 2.6 48 264-314 53-100 (138)
27 4ap4_A E3 ubiquitin ligase RNF 99.2 4.4E-12 1.5E-16 103.4 3.5 54 262-315 5-62 (133)
28 2ct0_A Non-SMC element 1 homol 99.2 1.1E-11 3.9E-16 92.0 5.3 53 262-316 13-67 (74)
29 2ecw_A Tripartite motif-contai 99.2 2.1E-11 7E-16 91.9 6.7 50 262-314 17-72 (85)
30 2ecv_A Tripartite motif-contai 99.2 2.5E-11 8.4E-16 91.5 6.3 51 262-315 17-73 (85)
31 2ecj_A Tripartite motif-contai 99.2 1.7E-11 5.7E-16 86.0 4.6 43 262-307 13-58 (58)
32 3lrq_A E3 ubiquitin-protein li 99.2 6.2E-12 2.1E-16 98.7 2.0 49 263-314 21-71 (100)
33 1t1h_A Gspef-atpub14, armadill 99.2 1.7E-11 5.7E-16 91.5 4.1 50 262-314 6-56 (78)
34 1g25_A CDK-activating kinase a 99.2 1.9E-11 6.4E-16 88.1 4.1 54 263-316 2-58 (65)
35 2egp_A Tripartite motif-contai 99.1 7.4E-12 2.5E-16 93.4 1.7 50 262-314 10-66 (79)
36 4ap4_A E3 ubiquitin ligase RNF 99.1 1.5E-11 5.2E-16 100.3 3.7 54 261-314 69-126 (133)
37 2y43_A E3 ubiquitin-protein li 99.1 1.1E-11 3.8E-16 96.9 2.4 48 263-313 21-69 (99)
38 2ckl_A Polycomb group ring fin 99.1 3.3E-11 1.1E-15 95.7 3.7 49 263-314 14-63 (108)
39 3ztg_A E3 ubiquitin-protein li 99.1 1E-10 3.6E-15 89.9 5.9 49 262-313 11-62 (92)
40 3fl2_A E3 ubiquitin-protein li 99.1 5E-11 1.7E-15 97.0 3.6 48 263-313 51-99 (124)
41 1jm7_A BRCA1, breast cancer ty 99.0 7.2E-11 2.5E-15 93.9 2.8 49 264-315 21-72 (112)
42 2ckl_B Ubiquitin ligase protei 99.0 1.6E-10 5.6E-15 98.5 3.6 49 263-313 53-102 (165)
43 3hct_A TNF receptor-associated 99.0 1.7E-10 5.7E-15 93.2 3.4 50 262-314 16-66 (118)
44 3l11_A E3 ubiquitin-protein li 99.0 5E-11 1.7E-15 95.7 0.1 50 261-313 12-62 (115)
45 1rmd_A RAG1; V(D)J recombinati 99.0 1.5E-10 5.2E-15 92.9 2.2 50 263-315 22-72 (116)
46 1z6u_A NP95-like ring finger p 98.9 2.3E-10 8E-15 96.4 3.0 48 264-314 78-126 (150)
47 1vyx_A ORF K3, K3RING; zinc-bi 98.9 7.3E-10 2.5E-14 79.0 3.8 48 262-312 4-58 (60)
48 2vje_A E3 ubiquitin-protein li 98.9 5.1E-10 1.7E-14 80.7 2.7 47 263-312 7-56 (64)
49 1bor_A Transcription factor PM 98.9 3.3E-10 1.1E-14 79.4 1.4 47 263-315 5-51 (56)
50 1e4u_A Transcriptional repress 98.9 1.4E-09 4.9E-14 81.5 4.8 53 262-315 9-64 (78)
51 2y1n_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 104.1 4.7 48 264-314 332-380 (389)
52 1wgm_A Ubiquitin conjugation f 98.8 4.1E-09 1.4E-13 82.4 6.2 50 262-314 20-70 (98)
53 3knv_A TNF receptor-associated 98.8 9.4E-10 3.2E-14 91.7 2.3 49 262-313 29-78 (141)
54 2kr4_A Ubiquitin conjugation f 98.8 3.3E-09 1.1E-13 80.7 4.8 50 262-314 12-61 (85)
55 2kre_A Ubiquitin conjugation f 98.8 8.3E-09 2.8E-13 81.0 6.6 51 261-314 26-76 (100)
56 3k1l_B Fancl; UBC, ring, RWD, 98.8 1E-09 3.5E-14 102.9 1.6 53 262-314 306-374 (381)
57 2vje_B MDM4 protein; proto-onc 98.8 2.1E-09 7.1E-14 77.2 2.2 47 264-313 7-56 (63)
58 1jm7_B BARD1, BRCA1-associated 98.8 1.2E-09 4E-14 88.0 0.9 47 263-314 21-68 (117)
59 4ic3_A E3 ubiquitin-protein li 98.7 1.4E-09 4.9E-14 80.5 0.8 44 263-313 23-67 (74)
60 2ea5_A Cell growth regulator w 98.7 1.5E-08 5.1E-13 73.8 5.0 49 259-314 10-59 (68)
61 3hcs_A TNF receptor-associated 98.6 1E-08 3.4E-13 87.7 3.0 50 262-314 16-66 (170)
62 2yu4_A E3 SUMO-protein ligase 98.5 3.5E-08 1.2E-12 76.4 3.1 46 262-310 5-59 (94)
63 2ecg_A Baculoviral IAP repeat- 98.5 1.5E-08 5.3E-13 75.0 0.7 45 263-314 24-69 (75)
64 2c2l_A CHIP, carboxy terminus 98.5 5.9E-08 2E-12 88.4 4.6 49 262-313 206-255 (281)
65 1wim_A KIAA0161 protein; ring 98.4 7.3E-08 2.5E-12 74.3 2.7 48 263-310 4-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.4 5.9E-08 2E-12 72.7 0.5 43 264-313 18-61 (79)
67 2f42_A STIP1 homology and U-bo 98.3 2.8E-07 9.5E-12 79.6 3.3 50 262-314 104-154 (179)
68 3t6p_A Baculoviral IAP repeat- 98.2 2.7E-07 9.2E-12 87.7 1.3 45 262-313 293-338 (345)
69 2bay_A PRE-mRNA splicing facto 98.2 4.3E-07 1.5E-11 64.6 2.0 47 265-314 4-51 (61)
70 3htk_C E3 SUMO-protein ligase 98.0 2.1E-06 7E-11 78.1 3.4 50 262-313 179-232 (267)
71 3vk6_A E3 ubiquitin-protein li 97.7 1.6E-05 5.4E-10 61.5 3.0 47 266-314 3-50 (101)
72 3nw0_A Non-structural maintena 97.6 2.5E-05 8.6E-10 70.3 3.4 49 264-314 180-230 (238)
73 2lri_C Autoimmune regulator; Z 94.6 0.028 9.4E-07 40.2 3.5 47 262-311 10-60 (66)
74 2ko5_A Ring finger protein Z; 94.3 0.013 4.6E-07 44.5 1.4 48 263-315 27-75 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 93.7 0.03 1E-06 42.8 2.3 35 263-297 2-36 (101)
76 1wil_A KIAA1045 protein; ring 89.7 0.37 1.3E-05 35.8 4.1 33 261-297 12-47 (89)
77 2l5u_A Chromodomain-helicase-D 88.7 0.23 7.8E-06 34.6 2.3 46 262-310 9-58 (61)
78 2l43_A N-teminal domain from h 87.3 0.24 8.4E-06 37.2 1.9 55 260-314 21-79 (88)
79 1we9_A PHD finger family prote 87.3 0.18 6.3E-06 35.2 1.1 49 262-310 4-58 (64)
80 1f62_A Transcription factor WS 87.1 0.21 7E-06 33.3 1.2 44 266-309 2-49 (51)
81 1fp0_A KAP-1 corepressor; PHD 86.6 0.38 1.3E-05 36.2 2.6 50 259-311 20-73 (88)
82 3o36_A Transcription intermedi 84.6 0.19 6.6E-06 42.7 0.1 47 262-311 2-52 (184)
83 1mm2_A MI2-beta; PHD, zinc fin 84.5 0.2 7E-06 34.9 0.2 48 263-313 8-59 (61)
84 1xwh_A Autoimmune regulator; P 84.2 0.22 7.6E-06 35.2 0.2 49 262-313 6-58 (66)
85 2puy_A PHD finger protein 21A; 83.4 0.12 4E-06 35.9 -1.4 48 263-313 4-55 (60)
86 2k16_A Transcription initiatio 83.1 0.35 1.2E-05 34.9 1.0 51 263-314 17-72 (75)
87 2ysm_A Myeloid/lymphoid or mix 82.9 0.35 1.2E-05 37.6 1.0 47 262-308 5-55 (111)
88 2xb1_A Pygopus homolog 2, B-ce 80.6 0.38 1.3E-05 37.3 0.4 50 265-314 4-65 (105)
89 2yql_A PHD finger protein 21A; 80.5 0.19 6.6E-06 34.3 -1.2 45 262-309 7-55 (56)
90 3lqh_A Histone-lysine N-methyl 79.8 0.75 2.6E-05 39.3 2.0 47 265-311 3-64 (183)
91 2e6r_A Jumonji/ARID domain-con 77.3 0.31 1.1E-05 36.9 -1.0 49 261-310 13-66 (92)
92 1wem_A Death associated transc 77.1 1.4 4.9E-05 31.7 2.6 48 265-312 16-72 (76)
93 3u5n_A E3 ubiquitin-protein li 76.0 0.41 1.4E-05 41.5 -0.8 45 263-311 6-55 (207)
94 2yt5_A Metal-response element- 74.7 1.6 5.3E-05 30.5 2.2 50 262-311 4-62 (66)
95 3v43_A Histone acetyltransfera 73.4 0.92 3.1E-05 35.4 0.7 45 265-309 62-111 (112)
96 1wev_A Riken cDNA 1110020M19; 72.1 0.39 1.3E-05 36.0 -1.7 54 263-316 15-78 (88)
97 2e6s_A E3 ubiquitin-protein li 71.6 2.2 7.5E-05 31.1 2.4 44 265-309 27-76 (77)
98 2vpb_A Hpygo1, pygopus homolog 70.6 3.1 0.00011 29.2 2.9 34 262-295 6-41 (65)
99 2kgg_A Histone demethylase jar 70.2 1.6 5.4E-05 29.1 1.2 43 266-308 4-52 (52)
100 1weu_A Inhibitor of growth fam 68.8 4.1 0.00014 30.6 3.4 47 263-312 34-87 (91)
101 3v43_A Histone acetyltransfera 68.5 5.4 0.00019 30.9 4.2 32 264-295 5-42 (112)
102 2ku3_A Bromodomain-containing 66.8 4.9 0.00017 28.7 3.3 50 261-310 13-66 (71)
103 3m62_A Ubiquitin conjugation f 66.4 3.2 0.00011 44.0 3.2 50 262-314 889-939 (968)
104 4gne_A Histone-lysine N-methyl 65.9 4.7 0.00016 31.3 3.3 48 262-315 13-67 (107)
105 1wen_A Inhibitor of growth fam 64.6 4.6 0.00016 28.8 2.8 41 265-311 16-66 (71)
106 2ri7_A Nucleosome-remodeling f 62.3 1.9 6.4E-05 36.0 0.4 47 263-310 7-59 (174)
107 1wep_A PHF8; structural genomi 60.8 10 0.00035 27.3 4.2 47 265-311 12-64 (79)
108 1wee_A PHD finger family prote 58.1 2.3 8E-05 30.2 0.3 46 264-310 16-66 (72)
109 3shb_A E3 ubiquitin-protein li 58.0 1.2 4.2E-05 32.5 -1.3 44 266-310 28-77 (77)
110 2lv9_A Histone-lysine N-methyl 57.6 3.3 0.00011 31.5 1.0 44 266-309 29-75 (98)
111 2lbm_A Transcriptional regulat 57.3 8.6 0.00029 31.3 3.6 44 263-309 62-116 (142)
112 2kwj_A Zinc finger protein DPF 54.7 1 3.5E-05 35.3 -2.4 49 266-314 60-112 (114)
113 3c6w_A P28ING5, inhibitor of g 51.5 2.4 8.2E-05 29.1 -0.6 42 265-309 9-57 (59)
114 1weo_A Cellulose synthase, cat 50.6 49 0.0017 24.7 6.3 49 263-312 15-69 (93)
115 2kwj_A Zinc finger protein DPF 50.2 11 0.00038 29.1 3.1 33 265-297 2-41 (114)
116 2vnf_A ING 4, P29ING4, inhibit 49.5 2.6 8.8E-05 29.0 -0.7 39 265-309 10-58 (60)
117 2ysm_A Myeloid/lymphoid or mix 49.1 3.2 0.00011 32.0 -0.3 46 266-311 56-105 (111)
118 3o70_A PHD finger protein 13; 47.5 3.6 0.00012 29.1 -0.2 46 263-309 18-66 (68)
119 1wew_A DNA-binding family prot 46.7 9.6 0.00033 27.4 2.0 48 265-313 17-75 (78)
120 3ask_A E3 ubiquitin-protein li 45.4 4.8 0.00017 35.4 0.2 44 265-309 175-224 (226)
121 3asl_A E3 ubiquitin-protein li 44.1 3.5 0.00012 29.3 -0.7 43 266-309 20-68 (70)
122 3ql9_A Transcriptional regulat 43.3 21 0.00072 28.5 3.7 45 262-310 55-111 (129)
123 2cu8_A Cysteine-rich protein 2 42.7 21 0.00072 24.8 3.4 41 264-314 9-49 (76)
124 2co8_A NEDD9 interacting prote 40.5 29 0.001 24.6 3.9 42 263-314 14-55 (82)
125 1iml_A CRIP, cysteine rich int 39.7 13 0.00043 26.1 1.7 12 265-276 28-39 (76)
126 3i2d_A E3 SUMO-protein ligase 38.9 22 0.00075 33.5 3.7 46 265-312 250-299 (371)
127 3mjh_B Early endosome antigen 38.2 3.2 0.00011 25.4 -1.5 16 264-279 5-20 (34)
128 4fo9_A E3 SUMO-protein ligase 36.9 25 0.00085 33.0 3.7 46 265-312 216-265 (360)
129 2g6q_A Inhibitor of growth pro 36.5 5.8 0.0002 27.5 -0.6 41 265-309 11-59 (62)
130 1x62_A C-terminal LIM domain p 36.0 33 0.0011 24.0 3.5 39 263-312 14-52 (79)
131 2ks1_B Epidermal growth factor 35.7 41 0.0014 21.6 3.5 32 56-87 8-39 (44)
132 3kqi_A GRC5, PHD finger protei 35.6 11 0.00037 26.9 0.8 48 264-311 9-62 (75)
133 2dj7_A Actin-binding LIM prote 35.5 31 0.0011 24.4 3.3 40 263-312 14-53 (80)
134 2dar_A PDZ and LIM domain prot 35.1 50 0.0017 23.7 4.5 40 263-313 24-63 (90)
135 2pk7_A Uncharacterized protein 34.7 9.3 0.00032 27.1 0.3 19 295-313 2-20 (69)
136 1x4i_A Inhibitor of growth pro 31.7 7.3 0.00025 27.6 -0.7 45 265-312 6-57 (70)
137 2k9j_B Integrin beta-3; transm 31.5 45 0.0015 21.2 3.1 34 54-87 2-38 (43)
138 1wd2_A Ariadne-1 protein homol 31.3 13 0.00045 25.4 0.6 16 301-316 6-21 (60)
139 2d8y_A Eplin protein; LIM doma 30.5 96 0.0033 22.1 5.4 41 264-314 15-55 (91)
140 1zbd_B Rabphilin-3A; G protein 29.7 25 0.00085 28.2 2.1 33 263-295 54-88 (134)
141 2jny_A Uncharacterized BCR; st 29.7 7.6 0.00026 27.4 -0.9 19 295-313 4-22 (67)
142 1x4u_A Zinc finger, FYVE domai 29.4 58 0.002 23.5 3.9 35 262-296 12-47 (84)
143 2jvx_A NF-kappa-B essential mo 29.4 12 0.00039 21.8 0.0 13 301-313 3-15 (28)
144 1z2q_A LM5-1; membrane protein 29.3 63 0.0022 23.3 4.1 37 261-297 18-55 (84)
145 1x64_A Alpha-actinin-2 associa 28.9 88 0.003 22.2 4.9 41 263-314 24-64 (89)
146 2d8v_A Zinc finger FYVE domain 28.6 34 0.0012 24.0 2.3 32 262-297 6-38 (67)
147 1x4l_A Skeletal muscle LIM-pro 28.5 54 0.0018 22.3 3.5 40 265-313 6-47 (72)
148 2rsd_A E3 SUMO-protein ligase 27.9 6 0.00021 27.7 -1.7 44 265-309 10-64 (68)
149 1x61_A Thyroid receptor intera 27.3 62 0.0021 21.9 3.7 39 265-312 6-44 (72)
150 2gmg_A Hypothetical protein PF 27.1 10 0.00035 29.2 -0.6 26 283-313 71-96 (105)
151 2ei4_A AR 2, archaerhodopsin-2 26.8 74 0.0025 28.0 4.9 65 19-84 87-160 (253)
152 1loi_A Cyclic 3',5'-AMP specif 26.7 17 0.00059 20.0 0.4 8 24-31 10-17 (26)
153 1g47_A Pinch protein; LIM doma 26.1 65 0.0022 22.1 3.6 42 264-314 11-52 (77)
154 2l2t_A Receptor tyrosine-prote 25.8 70 0.0024 20.5 3.3 17 71-87 22-38 (44)
155 3o7a_A PHD finger protein 13 v 24.9 13 0.00043 24.5 -0.4 44 266-309 5-51 (52)
156 2hwn_E A kinase binding peptid 24.6 53 0.0018 18.3 2.1 16 33-48 3-18 (26)
157 2o35_A Hypothetical protein DU 24.1 30 0.001 26.3 1.5 13 288-300 42-54 (105)
158 3fyb_A Protein of unknown func 23.7 31 0.0011 26.2 1.5 12 288-299 41-52 (104)
159 2d8x_A Protein pinch; LIM doma 23.6 41 0.0014 22.8 2.1 39 265-314 6-44 (70)
160 1wyh_A SLIM 2, skeletal muscle 23.3 53 0.0018 22.2 2.6 41 265-314 6-46 (72)
161 1xio_A Anabaena sensory rhodop 22.8 54 0.0018 29.2 3.2 67 17-84 70-149 (261)
162 2kpi_A Uncharacterized protein 22.2 8.7 0.0003 26.1 -1.7 19 295-313 4-22 (56)
163 1z60_A TFIIH basal transcripti 22.1 28 0.00097 23.8 0.9 41 265-307 16-58 (59)
164 2d8z_A Four and A half LIM dom 22.1 92 0.0031 20.8 3.7 38 265-313 6-43 (70)
165 1m0k_A BR, bacteriorhodopsin; 22.1 90 0.0031 27.7 4.5 64 19-83 95-167 (262)
166 1a7i_A QCRP2 (LIM1); LIM domai 22.0 32 0.0011 24.1 1.3 40 265-314 8-47 (81)
167 2cor_A Pinch protein; LIM doma 21.5 80 0.0027 22.0 3.4 40 264-314 15-54 (79)
168 3f6q_B LIM and senescent cell 21.3 46 0.0016 22.4 2.0 41 265-314 12-52 (72)
169 3t7l_A Zinc finger FYVE domain 20.8 74 0.0025 23.3 3.1 36 263-298 19-55 (90)
170 1x63_A Skeletal muscle LIM-pro 20.7 91 0.0031 21.6 3.6 41 265-314 16-56 (82)
171 1x4k_A Skeletal muscle LIM-pro 20.6 78 0.0027 21.3 3.1 41 265-314 6-46 (72)
172 1vfy_A Phosphatidylinositol-3- 20.3 71 0.0024 22.3 2.8 33 264-296 11-44 (73)
173 2jr6_A UPF0434 protein NMA0874 20.2 9.9 0.00034 26.9 -1.8 19 296-314 3-21 (68)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-18 Score=131.39 Aligned_cols=77 Identities=35% Similarity=0.645 Sum_probs=65.9
Q ss_pred hccCCCHHHHhhcccceeeeccccccCcCCCCCCCCCcccccCCCCCCcccCCCCCCccccccccccCCCceEEeCCCCc
Q 020673 209 DQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH 288 (323)
Q Consensus 209 ~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~ 288 (323)
...|++++.+++||.+++...... ..++.+|+||+++|.+++.++.|||+|.
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~----------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~ 64 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGA----------------------------VGQEMCCPICCSEYVKGDVATELPCHHY 64 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSS----------------------------SSSCSEETTTTEECCTTCEEEEETTTEE
T ss_pred CCCCCCHHHHHhCCCeeecccccc----------------------------cCCCCCCcccChhhcCCCcEEecCCCCh
Confidence 357999999999999887643211 1345789999999999999999999999
Q ss_pred cchHhHHHHHhcCCCCccccccccC
Q 020673 289 FHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 289 FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
||..||++|++.+.+||+||+.+..
T Consensus 65 Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 65 FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 9999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.7e-18 Score=125.59 Aligned_cols=53 Identities=45% Similarity=1.014 Sum_probs=49.0
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
++.+|+||+++|.+++.++.+||+|.||..||++|++.+.+||+||+++....
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 45789999999999999999999999999999999999999999999987653
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=113.30 Aligned_cols=56 Identities=36% Similarity=0.812 Sum_probs=50.8
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCCc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 317 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~~ 317 (323)
.++.+|+||++.|.+++.++.|||+|.||..||++|++.+.+||+||+++......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 45679999999999999999999999999999999999999999999999765543
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=111.20 Aligned_cols=56 Identities=41% Similarity=1.012 Sum_probs=50.3
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCC
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 316 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~ 316 (323)
..++..|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||..+.....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 34567899999999999899999999999999999999999999999999876543
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.59 E-value=5.5e-16 Score=108.28 Aligned_cols=50 Identities=50% Similarity=1.194 Sum_probs=46.6
Q ss_pred CCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCcccccccc
Q 020673 263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
++.+|+||+++|.+++....+| |+|.||..||++|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4578999999999999999998 9999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=2e-15 Score=113.03 Aligned_cols=57 Identities=32% Similarity=0.828 Sum_probs=51.1
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCCc
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 317 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~~ 317 (323)
..++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||..+......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 345679999999999999999999999999999999999999999999999775543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.2e-15 Score=112.63 Aligned_cols=52 Identities=31% Similarity=0.657 Sum_probs=43.3
Q ss_pred CCCCccccccccccC-----------CCceEEeC-CCCccchHhHHHHHhcCCCCccccccccC
Q 020673 262 NEDAECCICLSAYDD-----------GVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~-----------~~~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
.++.+|+||+++|.+ ++.++.+| |+|.||.+||++||+.+.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 355678888888854 45577776 99999999999999999999999998764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.49 E-value=1.7e-14 Score=100.52 Aligned_cols=50 Identities=34% Similarity=0.690 Sum_probs=44.1
Q ss_pred CCCccccccccccCC-CceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673 263 EDAECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
++.+|+||++.|.++ +..+.+||+|.||..||++|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 457899999999765 45788899999999999999999999999999874
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=1.9e-14 Score=115.48 Aligned_cols=56 Identities=25% Similarity=0.473 Sum_probs=45.8
Q ss_pred CCCccccccccccCCC---------------ceEEeCCCCccchHhHHHHH-----hcCCCCccccccccCCCCcc
Q 020673 263 EDAECCICLSAYDDGV---------------ELRELPCGHHFHCACVDKWL-----YINATCPLCKYNILKSSSNQ 318 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~---------------~lr~LPC~H~FH~~CId~WL-----~~~~tCPlCR~~i~~~~~~~ 318 (323)
.+.+|+|||++|.++. .++.+||+|.||..||++|+ +.+.+||+||..+.....++
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~q 99 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ 99 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCC
Confidence 3468999999997653 44578999999999999999 45779999999987665543
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-14 Score=107.88 Aligned_cols=54 Identities=33% Similarity=0.779 Sum_probs=46.2
Q ss_pred CCCCCccccccccccCCCceEEeCCC-----CccchHhHHHHHhcC--CCCccccccccCCC
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYIN--ATCPLCKYNILKSS 315 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CId~WL~~~--~tCPlCR~~i~~~~ 315 (323)
+.++..|.||+++|++++.+ .+||+ |.||.+||++||+.+ .+||+||+++....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 45567899999999988776 69997 999999999999875 48999999987544
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.2e-14 Score=102.87 Aligned_cols=52 Identities=29% Similarity=0.643 Sum_probs=45.6
Q ss_pred CCCCccccccccccCC----CceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 262 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
.++.+|+||++.|.+. +.+..+||+|.||..||++|++.+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4568899999999864 345788999999999999999999999999998864
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.45 E-value=4.4e-14 Score=112.50 Aligned_cols=51 Identities=27% Similarity=0.541 Sum_probs=44.1
Q ss_pred CCCCccccccccccCC---------------CceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673 262 NEDAECCICLSAYDDG---------------VELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~---------------~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
.++..|+||++.|++. ..++.+||+|.||..||++||+.+.+||+||++..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3567899999999865 13677899999999999999999999999999853
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.43 E-value=4e-14 Score=103.77 Aligned_cols=54 Identities=28% Similarity=0.618 Sum_probs=47.1
Q ss_pred CCCCccccccccccCC----CceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 262 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
.++.+|+||++.|.+. +....+||+|.||..||++|++.+.+||+||.++....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 4567899999999764 55678899999999999999999999999999987654
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.42 E-value=5.4e-14 Score=100.74 Aligned_cols=53 Identities=28% Similarity=0.610 Sum_probs=46.2
Q ss_pred CCCccccccccccCC----CceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 263 EDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 263 ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
++.+|+||++.|.++ +....+||+|.||.+||++|++.+.+||+||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 457899999999864 45678999999999999999999999999999987653
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.5e-13 Score=100.64 Aligned_cols=51 Identities=35% Similarity=0.989 Sum_probs=45.4
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 316 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~ 316 (323)
.++..|+||++.+.+ ..+||+|.||..||++|++.+.+||+||+++.....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 456789999999887 789999999999999999999999999999886543
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=1.8e-13 Score=99.54 Aligned_cols=50 Identities=36% Similarity=0.806 Sum_probs=43.9
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
.++.+|+||++.+.++ ...+||+|.||..|+.+|++.+.+||+||.++..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3457899999998764 4788999999999999999999999999998864
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.2e-13 Score=100.18 Aligned_cols=49 Identities=33% Similarity=0.689 Sum_probs=44.0
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
.++..|+||++.+.+. ..+||+|.||..||++|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999999776 678999999999999999999999999998864
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=8.3e-13 Score=97.35 Aligned_cols=52 Identities=23% Similarity=0.586 Sum_probs=45.3
Q ss_pred CCCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCCCC
Q 020673 262 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKSSS 316 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~ 316 (323)
.++..|+||++.|.+. ..+ ||+|.||..||++|++.+.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 4567899999999885 455 899999999999999999999999999876544
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=97.53 Aligned_cols=54 Identities=26% Similarity=0.598 Sum_probs=45.7
Q ss_pred CCCCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcC--CCCccccccccCCCCc
Q 020673 261 SNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN--ATCPLCKYNILKSSSN 317 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~--~tCPlCR~~i~~~~~~ 317 (323)
..++..|+||++.|.++ ..+| |+|.||..||++|++.+ .+||+||.++...+..
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 34567999999999987 6799 99999999999999876 6899999987665443
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=98.93 Aligned_cols=53 Identities=28% Similarity=0.626 Sum_probs=46.4
Q ss_pred CCCCccccccccccCCCc-eEEeCCCCccchHhHHHHHhcC---CCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLYIN---ATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~-lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~i~~~ 314 (323)
.++.+|+||++.|.+++. .+.+||+|.||..||.+|++.+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456789999999998765 6788999999999999999876 7899999988654
No 21
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.4e-13 Score=111.29 Aligned_cols=51 Identities=27% Similarity=0.529 Sum_probs=1.5
Q ss_pred CCCCccccccccccCC-------------C--ceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673 262 NEDAECCICLSAYDDG-------------V--ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~-------------~--~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
.+++.|+||+++|++. + .+..+||+|.||..||++||+.+.+||+||++..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC---------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3567899999999762 2 2333589999999999999999999999999854
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=95.56 Aligned_cols=51 Identities=31% Similarity=0.641 Sum_probs=43.7
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHh---cCCCCccccccccCC
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY---INATCPLCKYNILKS 314 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~---~~~tCPlCR~~i~~~ 314 (323)
..++..|+||++.|.+. ..+||+|.||..||.+|++ .+.+||+||.++..+
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 34568999999999875 6779999999999999997 466899999998764
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.5e-12 Score=98.07 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=43.2
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
.++..|+||++.|.++ ..+||+|.||..||.+|++.+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4557899999999775 56899999999999999999999999999986
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.6e-12 Score=92.95 Aligned_cols=50 Identities=24% Similarity=0.560 Sum_probs=43.2
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHh-cCCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~~ 314 (323)
.++..|+||++.+.++. .+||+|.||..||.+|++ .+.+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45688999999998873 479999999999999994 578999999998764
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=88.54 Aligned_cols=44 Identities=32% Similarity=0.688 Sum_probs=38.5
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHh---cCCCCccc
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY---INATCPLC 307 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~---~~~tCPlC 307 (323)
..++..|+||++.|.++ ..+||+|.||..||.+|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34568999999999976 6789999999999999998 45689998
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=2.1e-12 Score=107.36 Aligned_cols=48 Identities=27% Similarity=0.837 Sum_probs=43.1
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
+..|+||++.|.++ ..+||+|.||..||.+|++.+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 35799999999876 6799999999999999999999999999998643
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=4.4e-12 Score=103.45 Aligned_cols=54 Identities=28% Similarity=0.618 Sum_probs=47.1
Q ss_pred CCCCccccccccccCC----CceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 262 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
.++.+|+||++.|.++ +....++|+|.||.+||++|++.+.+||+||+.+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 4567899999999764 55688999999999999999999999999999887654
No 28
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=92.02 Aligned_cols=53 Identities=28% Similarity=0.565 Sum_probs=44.2
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC--CCCccccccccCCCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNILKSSS 316 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~--~tCPlCR~~i~~~~~ 316 (323)
....+|+||.+.+..++... .|+|.||..||++||+.+ .+||+||++......
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 34478999999999876443 799999999999999987 899999998765443
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=2.1e-11 Score=91.89 Aligned_cols=50 Identities=26% Similarity=0.593 Sum_probs=44.3
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc------CCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI------NATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~~i~~~ 314 (323)
.++..|+||++.|.++ ..+||+|.||..||.+|++. +..||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4567999999999887 57899999999999999987 77899999998764
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.5e-11 Score=91.46 Aligned_cols=51 Identities=29% Similarity=0.683 Sum_probs=44.5
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc------CCCCccccccccCCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI------NATCPLCKYNILKSS 315 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~~i~~~~ 315 (323)
.++..|+||++.|.+. ..+||+|.||..|+.+|++. +.+||+||..+....
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 4568999999999876 56799999999999999987 789999999987643
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=85.99 Aligned_cols=43 Identities=33% Similarity=0.931 Sum_probs=37.3
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHH---hcCCCCccc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL---YINATCPLC 307 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL---~~~~tCPlC 307 (323)
.++..|+||++.|.++ ..+||+|.||..||++|+ +.+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999887 558999999999999995 456889998
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.16 E-value=6.2e-12 Score=98.75 Aligned_cols=49 Identities=29% Similarity=0.685 Sum_probs=42.7
Q ss_pred CCCccccccccccCCCceEE-eCCCCccchHhHHHHHhcC-CCCccccccccCC
Q 020673 263 EDAECCICLSAYDDGVELRE-LPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS 314 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~-LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~~ 314 (323)
++..|+||++.|.++ .. ++|+|.||..||.+|++.+ .+||+||.++...
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 457899999999875 55 8999999999999999987 7999999998643
No 33
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.16 E-value=1.7e-11 Score=91.49 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=44.2
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~ 314 (323)
.++..|+||++.|.++ ..+||+|.||..||.+|++. +.+||+||.++...
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4567899999999887 67899999999999999987 78999999998754
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.9e-11 Score=88.12 Aligned_cols=54 Identities=28% Similarity=0.515 Sum_probs=43.9
Q ss_pred CCCccccccc-cccCCCce-EEeCCCCccchHhHHHHHhc-CCCCccccccccCCCC
Q 020673 263 EDAECCICLS-AYDDGVEL-RELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSSS 316 (323)
Q Consensus 263 ed~~C~ICL~-~y~~~~~l-r~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~~ 316 (323)
++..|+||++ .|.++... ..+||+|.||..||++|+.. +.+||+||..+..++-
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3578999999 78777543 45789999999999999765 4679999999876543
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=7.4e-12 Score=93.42 Aligned_cols=50 Identities=28% Similarity=0.613 Sum_probs=43.5
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-------CCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-------NATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-------~~tCPlCR~~i~~~ 314 (323)
.++..|+||++.|.+. ..+||+|.||..||.+|++. +.+||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4568899999999886 45899999999999999987 67899999998754
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.15 E-value=1.5e-11 Score=100.26 Aligned_cols=54 Identities=28% Similarity=0.622 Sum_probs=46.7
Q ss_pred CCCCCccccccccccCC----CceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 261 SNEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
..++..|+||++.|.+. .....++|+|.||..||++|++.+.+||+||.++.++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 34567899999999863 4457889999999999999999999999999998765
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.14 E-value=1.1e-11 Score=96.87 Aligned_cols=48 Identities=23% Similarity=0.692 Sum_probs=42.7
Q ss_pred CCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 263 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
++..|+||++.|.++ ..+ ||+|.||..||.+|++.+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999875 455 899999999999999999999999998875
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.10 E-value=3.3e-11 Score=95.72 Aligned_cols=49 Identities=24% Similarity=0.670 Sum_probs=43.3
Q ss_pred CCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 263 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
++..|+||++.|.++ ..+ ||+|.||..||.+|++.+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 457899999999875 455 9999999999999999999999999998764
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.09 E-value=1e-10 Score=89.89 Aligned_cols=49 Identities=29% Similarity=0.678 Sum_probs=42.7
Q ss_pred CCCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcC--CCCccccccccC
Q 020673 262 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN--ATCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~--~tCPlCR~~i~~ 313 (323)
.++..|+||++.|.++ ..+| |+|.||..||.+|+..+ .+||+||..+..
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 62 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence 4568999999999987 6899 99999999999999754 589999998743
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.07 E-value=5e-11 Score=96.97 Aligned_cols=48 Identities=23% Similarity=0.566 Sum_probs=42.2
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-CCCccccccccC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~ 313 (323)
++..|+||++.|.++ ..+||+|.||..||.+|+..+ .+||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346899999999976 678999999999999999855 489999999976
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=7.2e-11 Score=93.89 Aligned_cols=49 Identities=39% Similarity=0.666 Sum_probs=42.2
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC---CCccccccccCCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA---TCPLCKYNILKSS 315 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~---tCPlCR~~i~~~~ 315 (323)
+..|+||++.|.++ ..+||+|.||..||.+|+..+. +||+||.++....
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 35899999999877 4579999999999999998754 8999999887643
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.99 E-value=1.6e-10 Score=98.52 Aligned_cols=49 Identities=27% Similarity=0.646 Sum_probs=41.8
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~ 313 (323)
++..|+||++.|.++ +..+||+|.||..||++|++. +.+||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456899999999875 333499999999999999997 7889999999854
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.99 E-value=1.7e-10 Score=93.16 Aligned_cols=50 Identities=34% Similarity=0.673 Sum_probs=43.6
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC-CCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~i~~~ 314 (323)
.++..|+||++.+.++ ..+||+|.||..||.+|++.+. +||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4457899999999877 6689999999999999998765 999999998764
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.98 E-value=5e-11 Score=95.65 Aligned_cols=50 Identities=24% Similarity=0.635 Sum_probs=43.5
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccC
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILK 313 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~ 313 (323)
..++..|+||++.|.+. ..+||+|.||..||.+|++. +.+||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34567899999999877 67899999999999999976 6789999998863
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.96 E-value=1.5e-10 Score=92.91 Aligned_cols=50 Identities=28% Similarity=0.666 Sum_probs=43.4
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCCC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS 315 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~ 315 (323)
++..|+||++.+.++ ..+||+|.||..||.+|++. +.+||+||.++....
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 346899999999876 56899999999999999987 789999999987543
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.95 E-value=2.3e-10 Score=96.40 Aligned_cols=48 Identities=17% Similarity=0.446 Sum_probs=42.5
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC-CCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~i~~~ 314 (323)
+..|+||++.|.++ ..+||+|.||..||.+|+..+. +||+||.++...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 46899999999877 5689999999999999998764 899999998765
No 47
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.91 E-value=7.3e-10 Score=78.95 Aligned_cols=48 Identities=31% Similarity=0.708 Sum_probs=38.3
Q ss_pred CCCCccccccccccCCCceEEeCCC--C---ccchHhHHHHHhc--CCCCcccccccc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCG--H---HFHCACVDKWLYI--NATCPLCKYNIL 312 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~--H---~FH~~CId~WL~~--~~tCPlCR~~i~ 312 (323)
.+...|.||+++. ++++ .+||+ | .||..|+++|+.. +.+||+||+++.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3457899999983 3344 69966 4 9999999999975 678999999875
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.89 E-value=5.1e-10 Score=80.67 Aligned_cols=47 Identities=28% Similarity=0.541 Sum_probs=40.5
Q ss_pred CCCccccccccccCCCceEEe--CCCCc-cchHhHHHHHhcCCCCcccccccc
Q 020673 263 EDAECCICLSAYDDGVELREL--PCGHH-FHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~L--PC~H~-FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
++.+|.||++...+. ..+ ||+|. |..+|+++|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 457899999987665 444 99999 789999999999999999999885
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=3.3e-10 Score=79.40 Aligned_cols=47 Identities=21% Similarity=0.517 Sum_probs=40.6
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
++..|+||++.|.+. +.|||+|.||..||.+| +.+||+||+.+....
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 457899999999987 67999999999999884 678999999987654
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=1.4e-09 Score=81.53 Aligned_cols=53 Identities=19% Similarity=0.450 Sum_probs=41.9
Q ss_pred CCCCccccccccccCCCceEEe--CCCCccchHhHHHHHh-cCCCCccccccccCCC
Q 020673 262 NEDAECCICLSAYDDGVELREL--PCGHHFHCACVDKWLY-INATCPLCKYNILKSS 315 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CId~WL~-~~~tCPlCR~~i~~~~ 315 (323)
.++.+|+||++.+...+. ..+ +|+|.|+..|+.++.+ .+..||.||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 456899999999865432 344 4999999999999875 4678999999987654
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.84 E-value=1.6e-09 Score=104.07 Aligned_cols=48 Identities=29% Similarity=0.695 Sum_probs=42.5
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHh-cCCCCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~~ 314 (323)
+.+|+||++.+.+. ..+||+|.||..|+.+|+. .+.+||+||.++...
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 36999999998665 7899999999999999999 789999999988653
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.84 E-value=4.1e-09 Score=82.44 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=45.5
Q ss_pred CCCCccccccccccCCCceEEeCCC-CccchHhHHHHHhcCCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCG-HHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
.++..|+||++-|.|+ ..+||+ |.|...||.+|+..+.+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 5678999999999998 679999 9999999999999999999999988654
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.82 E-value=9.4e-10 Score=91.75 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=42.6
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC-CCccccccccC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~i~~ 313 (323)
.++..|+||++.+.++ ..++|+|.||..||.+|++.+. +||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4567999999999888 6689999999999999998664 89999998643
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.81 E-value=3.3e-09 Score=80.72 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=45.1
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
.++..|+||++-|.++ ..+||+|.|...||.+|+..+.+||+||.++...
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4568999999999998 7899999999999999999999999999987643
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.79 E-value=8.3e-09 Score=81.00 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=46.0
Q ss_pred CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
..++..|+||++-|.++ ..+||+|.|...||.+|+..+.+||+||.++...
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 35678999999999999 7899999999999999999999999999988653
No 56
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.79 E-value=1e-09 Score=102.93 Aligned_cols=53 Identities=32% Similarity=0.752 Sum_probs=42.1
Q ss_pred CCCCccccccccccCCCceE-----EeCCCCccchHhHHHHHhcC-----------CCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELR-----ELPCGHHFHCACVDKWLYIN-----------ATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr-----~LPC~H~FH~~CId~WL~~~-----------~tCPlCR~~i~~~ 314 (323)
.+..+|+||++.+.++.++. ..+|+|.||..||.+||+.. .+||.||++|..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 34578999999998844332 24699999999999999753 4699999998754
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.76 E-value=2.1e-09 Score=77.20 Aligned_cols=47 Identities=28% Similarity=0.557 Sum_probs=40.2
Q ss_pred CCccccccccccCCCceEEe--CCCCc-cchHhHHHHHhcCCCCccccccccC
Q 020673 264 DAECCICLSAYDDGVELREL--PCGHH-FHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~L--PC~H~-FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
+..|.||++...+. ..+ ||+|. |+.+|+.+|.+.+..||+||++|..
T Consensus 7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 46899999986655 345 99998 9999999999988999999998853
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=1.2e-09 Score=87.96 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=41.1
Q ss_pred CCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 263 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
++..|+||++.|.++ ..+ ||+|.||..||.+|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 457899999999887 566 8999999999999998 7899999998543
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.74 E-value=1.4e-09 Score=80.48 Aligned_cols=44 Identities=30% Similarity=0.583 Sum_probs=38.4
Q ss_pred CCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
++..|.||++.+.+. ..+||+|. |+..|+.+| .+||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 456899999997765 67899999 999999998 889999998864
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.5e-08 Score=73.84 Aligned_cols=49 Identities=24% Similarity=0.595 Sum_probs=40.1
Q ss_pred cCCCCCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccCC
Q 020673 259 VLSNEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 259 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
....++..|.||++...+. ..+||+|. |+..|+.. ...||+||.+|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred ccCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3445678999999986654 78999999 99999984 57899999988653
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.64 E-value=1e-08 Score=87.69 Aligned_cols=50 Identities=34% Similarity=0.664 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-CCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~~ 314 (323)
.++..|+||++.+.++ ..+||+|.|+..||.+|++.+ .+||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4557999999999887 568999999999999999864 4999999988764
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=3.5e-08 Score=76.38 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=39.7
Q ss_pred CCCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcC------CCCcc--cccc
Q 020673 262 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN------ATCPL--CKYN 310 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~------~tCPl--CR~~ 310 (323)
.++..|+||++.|.++ ..+| |+|.|...||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3457899999999987 6786 99999999999999864 48999 9865
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.5e-08 Score=74.96 Aligned_cols=45 Identities=29% Similarity=0.574 Sum_probs=37.6
Q ss_pred CCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccCC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
++..|.||++.+.+. ..+||+|. |+..|+.+ ...||+||.++...
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 456899999998765 56899999 99999964 47899999988653
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=5.9e-08 Score=88.45 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=43.2
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-CCCccccccccC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~ 313 (323)
.++..|+||++-|.++ ..+||+|.|+..||.+|+..+ .+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4567899999999998 789999999999999999874 459999998864
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=7.3e-08 Score=74.33 Aligned_cols=48 Identities=21% Similarity=0.549 Sum_probs=40.1
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc--------CCCCcc--cccc
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPL--CKYN 310 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--------~~tCPl--CR~~ 310 (323)
+..+|.||++++.+++-++..+|+|.|+.+|+..+++. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999999988766666689999999999999964 236999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.36 E-value=5.9e-08 Score=72.73 Aligned_cols=43 Identities=23% Similarity=0.665 Sum_probs=36.7
Q ss_pred CCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
+..|.||++.+.+. ..+||+|. |+..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 46899999987664 78999999 999999987 389999998864
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.30 E-value=2.8e-07 Score=79.64 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=43.3
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-CCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~~ 314 (323)
.++..|+||++-|.++ ..+||+|.|...||.+|+..+ .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4567899999999998 678999999999999999874 5799999987643
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.21 E-value=2.7e-07 Score=87.67 Aligned_cols=45 Identities=27% Similarity=0.646 Sum_probs=39.2
Q ss_pred CCCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
.++..|+||++.+.+. ..+||+|. |+..|+..| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3567999999998765 77899999 999999998 789999998864
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.20 E-value=4.3e-07 Score=64.64 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=42.0
Q ss_pred CccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 265 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
..|+||++.++|+ ..+ +|+|.|-..||.+|++.+.+||+++.++...
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 4699999999987 667 7999999999999999999999999988654
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.04 E-value=2.1e-06 Score=78.07 Aligned_cols=50 Identities=22% Similarity=0.442 Sum_probs=41.6
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC--CCCcc--ccccccC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPL--CKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~--~tCPl--CR~~i~~ 313 (323)
..+..|+||++.|.++ ++.+.|+|.|...||.+|++.+ .+||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 4567999999999877 3445899999999999999865 47999 9987754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.72 E-value=1.6e-05 Score=61.53 Aligned_cols=47 Identities=26% Similarity=0.428 Sum_probs=37.9
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCC
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 314 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~ 314 (323)
-|.+|--.+. ...|.+||+|.|+-+|+..|.++ .++||.|+.+|..-
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 3667765544 35699999999999999999865 68899999988653
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.62 E-value=2.5e-05 Score=70.35 Aligned_cols=49 Identities=31% Similarity=0.605 Sum_probs=39.9
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcC--CCCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~--~tCPlCR~~i~~~ 314 (323)
-.+|.||-+-...+.... .|+|.||..|+++|++.+ .+||.|+.+-...
T Consensus 180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 478999999988774332 299999999999999865 4899999986554
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.59 E-value=0.028 Score=40.18 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=32.9
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC----CCccccccc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA----TCPLCKYNI 311 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~----tCPlCR~~i 311 (323)
..+..|.||-+. ++-+.-=.|...||..|++..|.... .||.|+.+-
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345789999743 43332223889999999999886543 599997653
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.32 E-value=0.013 Score=44.50 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=39.3
Q ss_pred CCCccccccccccCCCceEEeCCC-CccchHhHHHHHhcCCCCccccccccCCC
Q 020673 263 EDAECCICLSAYDDGVELRELPCG-HHFHCACVDKWLYINATCPLCKYNILKSS 315 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~i~~~~ 315 (323)
+...|-.|.-+.. ....|+ |.++..|+..-|.++..||+|+.++..+-
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 4467999987743 245676 99999999999999999999999987653
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.67 E-value=0.03 Score=42.82 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=28.0
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHH
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKW 297 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~W 297 (323)
++..|.||+++|..+....-++|+|.|...|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 45789999988655544555899999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.68 E-value=0.37 Score=35.83 Aligned_cols=33 Identities=24% Similarity=0.671 Sum_probs=24.5
Q ss_pred CCCCCccccccccccCCCceEEeC---CCCccchHhHHHH
Q 020673 261 SNEDAECCICLSAYDDGVELRELP---CGHHFHCACVDKW 297 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~LP---C~H~FH~~CId~W 297 (323)
...|..|.|| ..|..++ .+| |+-.||..|+.+-
T Consensus 12 ~~~D~~C~VC-~~~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcc-ccccccc---eeccccccccccHhhcccc
Confidence 3467899999 4445453 455 6799999999996
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.71 E-value=0.23 Score=34.61 Aligned_cols=46 Identities=22% Similarity=0.551 Sum_probs=31.0
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc----CCCCcccccc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----NATCPLCKYN 310 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~ 310 (323)
.++..|.+|-.. ++-+.--.|...||..|++.=+.. .=.||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999863 332222237789999999985543 2359999753
No 78
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=87.34 E-value=0.24 Score=37.19 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=34.7
Q ss_pred CCCCCCcccccccccc-CCCceEEeC-CCCccchHhHHHHHh--cCCCCccccccccCC
Q 020673 260 LSNEDAECCICLSAYD-DGVELRELP-CGHHFHCACVDKWLY--INATCPLCKYNILKS 314 (323)
Q Consensus 260 ~~~ed~~C~ICL~~y~-~~~~lr~LP-C~H~FH~~CId~WL~--~~~tCPlCR~~i~~~ 314 (323)
...++..|.||...-. +++.+..-. |.-.||..|+..=+. ..=.||.|+.....+
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 3456789999987642 233333333 778999999985321 123499997765443
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.34 E-value=0.18 Score=35.25 Aligned_cols=49 Identities=22% Similarity=0.416 Sum_probs=33.9
Q ss_pred CCCCccccccccccCCCceEEe-CCCCccchHhHHHHHh-----cCCCCcccccc
Q 020673 262 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLY-----INATCPLCKYN 310 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~-----~~~tCPlCR~~ 310 (323)
.++..|.||-..|.++.....- .|..=||..|+.---. .+-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4557799999998755433333 4888899999875332 24569999763
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.13 E-value=0.21 Score=33.32 Aligned_cols=44 Identities=27% Similarity=0.562 Sum_probs=28.2
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccc
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKY 309 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~ 309 (323)
.|.||-..-.+++-+.--.|...||..|++.=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764333323222388999999997644332 23999965
No 81
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.60 E-value=0.38 Score=36.24 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=33.4
Q ss_pred cCCCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccc
Q 020673 259 VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNI 311 (323)
Q Consensus 259 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i 311 (323)
....++..|.+|-.. ++-+.--.|.-.||..|+++=+... -.||.|+..-
T Consensus 20 ~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 20 TLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred ccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 344567889999865 4322222377899999998755432 2499997643
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.62 E-value=0.19 Score=42.74 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=31.8
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNI 311 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i 311 (323)
.++..|.+|-.. ++-+--=.|...||..|+++-+... =.||.|+..-
T Consensus 2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 355789999754 4422222377999999998876543 3499998643
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.52 E-value=0.2 Score=34.87 Aligned_cols=48 Identities=27% Similarity=0.457 Sum_probs=31.3
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccccC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i~~ 313 (323)
++..|.+|-+. ++-+.-=.|...||..|++.=+... =.||.|+....+
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 45779999753 3322222377899999998655432 249999775543
No 84
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=84.16 E-value=0.22 Score=35.20 Aligned_cols=49 Identities=24% Similarity=0.488 Sum_probs=32.2
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccccC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK 313 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i~~ 313 (323)
.++..|.||-+. ++-+.-=-|...||..|+++=+... =.||.|+..-.+
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 58 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence 456789999864 3322222388999999998655432 249999765443
No 85
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=83.43 E-value=0.12 Score=35.88 Aligned_cols=48 Identities=29% Similarity=0.596 Sum_probs=32.3
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccccC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i~~ 313 (323)
++..|.+|-.. ++-+.-=-|...||..|+++=+... =.||.|+....+
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 45789999874 4333222377999999999655432 249999776554
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.11 E-value=0.35 Score=34.88 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=33.7
Q ss_pred CCCccccccccccCCCceEEe-CCCCccchHhHHHHHhc----CCCCccccccccCC
Q 020673 263 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYI----NATCPLCKYNILKS 314 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~----~~tCPlCR~~i~~~ 314 (323)
++..|.||-.... ++....- -|.--||..|+..-... .-.||.|+..+.+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 3456999988764 3323222 37789999999865432 34599998876543
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.91 E-value=0.35 Score=37.60 Aligned_cols=47 Identities=32% Similarity=0.613 Sum_probs=30.9
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc----CCCCcccc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----NATCPLCK 308 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR 308 (323)
.++..|.||.+.-+..+-+.--.|...||..|++..+.. .-.||-|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 456789999887332222333458899999999987642 23466664
No 88
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=80.57 E-value=0.38 Score=37.33 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=34.4
Q ss_pred CccccccccccCCCceEEe--CCCCccchHhHHHHH----h------cCCCCccccccccCC
Q 020673 265 AECCICLSAYDDGVELREL--PCGHHFHCACVDKWL----Y------INATCPLCKYNILKS 314 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CId~WL----~------~~~tCPlCR~~i~~~ 314 (323)
..|.||...|.++.....- .|..=||..|+.-=- + .+-.||.|+..-..+
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~ 65 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS 65 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCC
Confidence 5799999999776554444 377889999986321 0 245699998765443
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.55 E-value=0.19 Score=34.27 Aligned_cols=45 Identities=27% Similarity=0.562 Sum_probs=29.6
Q ss_pred CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccc
Q 020673 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKY 309 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~ 309 (323)
.++..|.+|-.. ++-+.--.|...||..|+++=+... =.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 455789999874 3323222378999999998655432 23888854
No 90
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=79.81 E-value=0.75 Score=39.31 Aligned_cols=47 Identities=26% Similarity=0.490 Sum_probs=33.4
Q ss_pred CccccccccccCCCc---eEEeC-CCCccchHhHHHH------Hh-----cCCCCccccccc
Q 020673 265 AECCICLSAYDDGVE---LRELP-CGHHFHCACVDKW------LY-----INATCPLCKYNI 311 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~---lr~LP-C~H~FH~~CId~W------L~-----~~~tCPlCR~~i 311 (323)
..|+||-..|.+++. ...-- |..=||..|+.-= +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999998873 33333 8899999998431 11 146899998753
No 91
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.35 E-value=0.31 Score=36.87 Aligned_cols=49 Identities=22% Similarity=0.393 Sum_probs=32.3
Q ss_pred CCCCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcC----CCCcccccc
Q 020673 261 SNEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYIN----ATCPLCKYN 310 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~----~tCPlCR~~ 310 (323)
..++..|.||-..-.++ .+..- -|...||..|+++=|... =.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34567899998874333 33333 388999999998544332 239999764
No 92
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.08 E-value=1.4 Score=31.68 Aligned_cols=48 Identities=25% Similarity=0.381 Sum_probs=31.1
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHH---------hcCCCCcccccccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWL---------YINATCPLCKYNIL 312 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL---------~~~~tCPlCR~~i~ 312 (323)
..-+||-..+.++.-+.--.|..=||..|+.-=- ..+-.||.|+..-.
T Consensus 16 ~~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3445999887654333333488889999985211 24677999976443
No 93
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=75.99 E-value=0.41 Score=41.52 Aligned_cols=45 Identities=24% Similarity=0.499 Sum_probs=30.6
Q ss_pred CCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcC----CCCccccccc
Q 020673 263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN----ATCPLCKYNI 311 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~----~tCPlCR~~i 311 (323)
++..|.+|-.. + ++..-. |...||..|+++-+... =.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999744 3 222222 77999999998876543 3599997643
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=74.71 E-value=1.6 Score=30.48 Aligned_cols=50 Identities=22% Similarity=0.542 Sum_probs=33.1
Q ss_pred CCCCccccccccccC-CCceEEeC-CCCccchHhHHHHHh-------cCCCCccccccc
Q 020673 262 NEDAECCICLSAYDD-GVELRELP-CGHHFHCACVDKWLY-------INATCPLCKYNI 311 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~-~~~lr~LP-C~H~FH~~CId~WL~-------~~~tCPlCR~~i 311 (323)
.++..|.||.....+ +..+..-. |.-.||..|++.=+. ..=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456789999987543 23333333 889999999986442 123599997643
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=73.35 E-value=0.92 Score=35.39 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=29.5
Q ss_pred CccccccccccCCCceEEeC-CCCccchHhHHHHHhcC----CCCccccc
Q 020673 265 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN----ATCPLCKY 309 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~----~tCPlCR~ 309 (323)
..|.||-..-.+++.+..-. |...||..|+++=|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 36888886533333333333 88999999998755432 25999974
No 96
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.06 E-value=0.39 Score=36.03 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=35.8
Q ss_pred CCCccccccccccCC-CceEEeC-CCCccchHhHHHHHhc--------CCCCccccccccCCCC
Q 020673 263 EDAECCICLSAYDDG-VELRELP-CGHHFHCACVDKWLYI--------NATCPLCKYNILKSSS 316 (323)
Q Consensus 263 ed~~C~ICL~~y~~~-~~lr~LP-C~H~FH~~CId~WL~~--------~~tCPlCR~~i~~~~~ 316 (323)
++..|.+|...-.++ +.+..-- |+..||..|++.=|.. .=.||.|+.......+
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~ 78 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTT
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhcc
Confidence 467899999874432 2333333 8899999999876541 2359999876655443
No 97
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.60 E-value=2.2 Score=31.06 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=27.7
Q ss_pred CccccccccccCCCceEEe-CCCCccchHhHHHHHhc-----CCCCccccc
Q 020673 265 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYI-----NATCPLCKY 309 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~-----~~tCPlCR~ 309 (323)
..|.||...=. ++++..- .|...||..|+++=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37888986522 3333332 37899999999854432 124888864
No 98
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=70.62 E-value=3.1 Score=29.18 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=24.6
Q ss_pred CCCCccccccccccCCCceEEe--CCCCccchHhHH
Q 020673 262 NEDAECCICLSAYDDGVELREL--PCGHHFHCACVD 295 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CId 295 (323)
.....|.+|...|.+++....- .|.-=||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3456899999999877644443 588889999985
No 99
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=70.20 E-value=1.6 Score=29.14 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=28.7
Q ss_pred ccccccccccCCCceEEe--CCCCccchHhHHHHH----hcCCCCcccc
Q 020673 266 ECCICLSAYDDGVELREL--PCGHHFHCACVDKWL----YINATCPLCK 308 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~L--PC~H~FH~~CId~WL----~~~~tCPlCR 308 (323)
.|++|...|.+++.-..- .|..=||..|+.--- ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999998765433332 477789999976322 2456799885
No 100
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.77 E-value=4.1 Score=30.63 Aligned_cols=47 Identities=28% Similarity=0.557 Sum_probs=27.3
Q ss_pred CCCccccccccccCCCceEEeC--CC-CccchHhHHHHHhc----CCCCcccccccc
Q 020673 263 EDAECCICLSAYDDGVELRELP--CG-HHFHCACVDKWLYI----NATCPLCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LP--C~-H~FH~~CId~WL~~----~~tCPlCR~~i~ 312 (323)
++...+||-.... ++-+.-=- |. .-||..|+. |.. +-.||.|+..-.
T Consensus 34 ~e~~yCiC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCSTTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEEECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 3445559988653 32111112 33 469999997 443 235999976443
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.55 E-value=5.4 Score=30.86 Aligned_cols=32 Identities=28% Similarity=0.581 Sum_probs=21.9
Q ss_pred CCcccccccccc-----CCCceEE-eCCCCccchHhHH
Q 020673 264 DAECCICLSAYD-----DGVELRE-LPCGHHFHCACVD 295 (323)
Q Consensus 264 d~~C~ICL~~y~-----~~~~lr~-LPC~H~FH~~CId 295 (323)
...|.+|+..=. +++++.. --|...||..|++
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 467999997631 2333333 3488999999996
No 102
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=66.84 E-value=4.9 Score=28.69 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=31.8
Q ss_pred CCCCCccccccccc-cCCCceEEeC-CCCccchHhHHHHHhc--CCCCcccccc
Q 020673 261 SNEDAECCICLSAY-DDGVELRELP-CGHHFHCACVDKWLYI--NATCPLCKYN 310 (323)
Q Consensus 261 ~~ed~~C~ICL~~y-~~~~~lr~LP-C~H~FH~~CId~WL~~--~~tCPlCR~~ 310 (323)
..++..|.||.+.- .+++++..-- |.-.||..|+..=..- .=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34567899998764 2333343333 8899999999753211 2248888653
No 103
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=66.41 E-value=3.2 Score=43.96 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=44.0
Q ss_pred CCCCccccccccccCCCceEEeCCC-CccchHhHHHHHhcCCCCccccccccCC
Q 020673 262 NEDAECCICLSAYDDGVELRELPCG-HHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
++.-.|+|=++-+.|+ ..+|-+ |.|-..+|.+||..+.+||.=|.++...
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4567899999999999 789987 5899999999999999999999888653
No 104
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=65.87 E-value=4.7 Score=31.25 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=30.5
Q ss_pred CCCCccccccccccCCCceEEe---CCCCccchHhHHHHHhcC----CCCccccccccCCC
Q 020673 262 NEDAECCICLSAYDDGVELREL---PCGHHFHCACVDKWLYIN----ATCPLCKYNILKSS 315 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~L---PC~H~FH~~CId~WL~~~----~tCPlCR~~i~~~~ 315 (323)
.++..|.+|-+. + ++..- .|...||..|+. |... =.||.|+-.+..+.
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCC
Confidence 355779999732 3 33232 266899999998 5432 24998876665443
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=64.57 E-value=4.6 Score=28.80 Aligned_cols=41 Identities=32% Similarity=0.704 Sum_probs=25.6
Q ss_pred CccccccccccCCCceEEeC-----CC-CccchHhHHHHHhcC----CCCccccccc
Q 020673 265 AECCICLSAYDDGVELRELP-----CG-HHFHCACVDKWLYIN----ATCPLCKYNI 311 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LP-----C~-H~FH~~CId~WL~~~----~tCPlCR~~i 311 (323)
...+||-.... ++ .+- |. .-||..|+. |... -.||.|+..-
T Consensus 16 ~~~C~C~~~~~-g~---MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYCLCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCSTTCCCSC-SS---EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEEECCCCCC-CC---EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 33448987643 42 333 44 479999998 4432 3599997643
No 106
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=62.27 E-value=1.9 Score=36.00 Aligned_cols=47 Identities=23% Similarity=0.500 Sum_probs=30.9
Q ss_pred CCCccccccccccCCCceEEe-CCCCccchHhHHHHH-----hcCCCCcccccc
Q 020673 263 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWL-----YINATCPLCKYN 310 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL-----~~~~tCPlCR~~ 310 (323)
++..| +|-..+.++.....- .|..-||..|+.--- ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34567 999987655433333 377899999995321 124569999763
No 107
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.79 E-value=10 Score=27.27 Aligned_cols=47 Identities=26% Similarity=0.458 Sum_probs=30.2
Q ss_pred CccccccccccCCCceEEe-CCCCccchHhHHHHHh-----cCCCCccccccc
Q 020673 265 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLY-----INATCPLCKYNI 311 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~-----~~~tCPlCR~~i 311 (323)
..-+||-..+.++..-.+- -|..=||..|+.-=-. ..-.||.|+..-
T Consensus 12 ~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3445999988644333333 3778899999863221 245699998653
No 108
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.08 E-value=2.3 Score=30.24 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=29.8
Q ss_pred CCccccccccccCCCceEEe-CCCCccchHhHHHHH----hcCCCCcccccc
Q 020673 264 DAECCICLSAYDDGVELREL-PCGHHFHCACVDKWL----YINATCPLCKYN 310 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL----~~~~tCPlCR~~ 310 (323)
...| ||-..+.+++....- .|..=||..|+.-=- ..+-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3457 798887666433333 377889999986421 123569999764
No 109
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=58.03 E-value=1.2 Score=32.46 Aligned_cols=44 Identities=27% Similarity=0.511 Sum_probs=25.5
Q ss_pred ccccccccccCCCceEEe-CCCCccchHhHHHHHhcC-----CCCcccccc
Q 020673 266 ECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYIN-----ATCPLCKYN 310 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~-----~tCPlCR~~ 310 (323)
.|.+|-..= +++.+..- -|...||..|+++=|... =.||.|+.+
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 466665442 22222222 277999999999766432 259999753
No 110
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=57.59 E-value=3.3 Score=31.47 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=28.4
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhc---CCCCccccc
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLCKY 309 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~ 309 (323)
.-|||-....++.-+.-=.|.--||..|+..=+.. .-.||.|+.
T Consensus 29 vrCiC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCCTTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEeECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 33499887666643333348899999998753221 236999974
No 111
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=57.30 E-value=8.6 Score=31.31 Aligned_cols=44 Identities=23% Similarity=0.377 Sum_probs=29.8
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHh-----------cCCCCccccc
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----------INATCPLCKY 309 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-----------~~~tCPlCR~ 309 (323)
.+..|.+|-+. ++-+--=.|...||..||++=+. ..=.||.|+.
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45789999765 43222223779999999997652 1235999974
No 112
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=54.69 E-value=1 Score=35.27 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=30.4
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccccCC
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILKS 314 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i~~~ 314 (323)
.|.||-..-.+++-+.---|...||..|+++=|... =.||.|+....++
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 577887653333322222388999999998644332 2399997765443
No 113
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=51.52 E-value=2.4 Score=29.13 Aligned_cols=42 Identities=33% Similarity=0.643 Sum_probs=24.6
Q ss_pred CccccccccccCCCceEEeC--CC-CccchHhHHHHHhcC----CCCccccc
Q 020673 265 AECCICLSAYDDGVELRELP--CG-HHFHCACVDKWLYIN----ATCPLCKY 309 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LP--C~-H~FH~~CId~WL~~~----~tCPlCR~ 309 (323)
...+||-... .++-+.-=. |. .-||..|+. |... -.||.|+.
T Consensus 9 ~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEETTTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEEECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4455998764 232111112 44 589999998 4432 35999964
No 114
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=50.59 E-value=49 Score=24.69 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=34.3
Q ss_pred CCCcccccccccc---CCCceEEe--CCCCccchHhHHHHHh-cCCCCcccccccc
Q 020673 263 EDAECCICLSAYD---DGVELREL--PCGHHFHCACVDKWLY-INATCPLCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~y~---~~~~lr~L--PC~H~FH~~CId~WL~-~~~tCPlCR~~i~ 312 (323)
....|.||=++.. +++ +.+. -|+--.+..|.+-=.+ -++.||-|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge-~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGD-LFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSS-BCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCC-EEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4478999998864 333 2221 2556678999876554 4789999999886
No 115
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=50.22 E-value=11 Score=29.13 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=21.9
Q ss_pred Ccccccccccc------CCCceEE-eCCCCccchHhHHHH
Q 020673 265 AECCICLSAYD------DGVELRE-LPCGHHFHCACVDKW 297 (323)
Q Consensus 265 ~~C~ICL~~y~------~~~~lr~-LPC~H~FH~~CId~W 297 (323)
..|.+|+..-. +++++.. -.|...||..|++..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 35999987642 1223333 348899999999865
No 116
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=49.48 E-value=2.6 Score=29.02 Aligned_cols=39 Identities=33% Similarity=0.745 Sum_probs=24.3
Q ss_pred CccccccccccCCCceEEeCCC------CccchHhHHHHHhcC----CCCccccc
Q 020673 265 AECCICLSAYDDGVELRELPCG------HHFHCACVDKWLYIN----ATCPLCKY 309 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~------H~FH~~CId~WL~~~----~tCPlCR~ 309 (323)
...+||-.... ++ .+-|. .-||..|+. |... -.||.|+.
T Consensus 10 ~~~C~C~~~~~-g~---mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYCLCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEETTTTEECC-SE---EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEEECCCcCC-CC---EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44559987642 32 33333 469999998 5432 35999864
No 117
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=49.09 E-value=3.2 Score=32.00 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=27.7
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHhc----CCCCccccccc
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----NATCPLCKYNI 311 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~i 311 (323)
.|.+|-..-.+...+.---|...||..|+++=+.. .-.||.|+.--
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 56677665333222222237899999999864443 23499996643
No 118
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=47.54 E-value=3.6 Score=29.08 Aligned_cols=46 Identities=15% Similarity=0.382 Sum_probs=28.3
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHh---cCCCCccccc
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY---INATCPLCKY 309 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~---~~~tCPlCR~ 309 (323)
+...| ||-..+.++.-+.--.|..=||..|+.-=-. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 33456 9988766432333234778899999864221 2345888864
No 119
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.72 E-value=9.6 Score=27.44 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=29.9
Q ss_pred CccccccccccCCCceEEe--CCCCccchHhHHHHH---------hcCCCCccccccccC
Q 020673 265 AECCICLSAYDDGVELREL--PCGHHFHCACVDKWL---------YINATCPLCKYNILK 313 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CId~WL---------~~~~tCPlCR~~i~~ 313 (323)
..| ||-....++.-+.-= .|..=||..|+.-=- ..+-.||.|+..-.+
T Consensus 17 ~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 17 VRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred EEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 445 898875554333222 488889999986321 124569999875443
No 120
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=45.40 E-value=4.8 Score=35.40 Aligned_cols=44 Identities=27% Similarity=0.521 Sum_probs=24.7
Q ss_pred CccccccccccCCCceEEe-CCCCccchHhHHHHHhc--C---CCCccccc
Q 020673 265 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYI--N---ATCPLCKY 309 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~--~---~tCPlCR~ 309 (323)
..|.+|-..=. ++.+..- -|...||..|+++=|.. . =.||.|+.
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 36888876422 2233222 38899999999954432 1 24999965
No 121
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=44.12 E-value=3.5 Score=29.31 Aligned_cols=43 Identities=28% Similarity=0.528 Sum_probs=25.8
Q ss_pred ccccccccccCCCceEEeC-CCCccchHhHHHHHhc-----CCCCccccc
Q 020673 266 ECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI-----NATCPLCKY 309 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~-----~~tCPlCR~ 309 (323)
.|.||...= +++.+..-- |...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 566776542 223332222 7799999999854432 225888864
No 122
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=43.32 E-value=21 Score=28.49 Aligned_cols=45 Identities=27% Similarity=0.490 Sum_probs=29.1
Q ss_pred CCCCccccccccccCCCceEEe-CCCCccchHhHHHHH------hc-----CCCCcccccc
Q 020673 262 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWL------YI-----NATCPLCKYN 310 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL------~~-----~~tCPlCR~~ 310 (323)
..+..|.||-+. ++ +.-- .|...||.+||++=+ +. .=.|++|+..
T Consensus 55 g~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345679999865 32 2222 266999999999742 22 1359999654
No 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.73 E-value=21 Score=24.83 Aligned_cols=41 Identities=17% Similarity=0.416 Sum_probs=30.9
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
...|.-|-..+.+++.+. .-+..||.+| .+|..|+.++...
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCCC
Confidence 367999999988777544 4578899877 4588998887643
No 124
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.45 E-value=29 Score=24.64 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=30.3
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
....|.-|-..+.+.+.+. .=+..||.+| .+|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCC
Confidence 3467999999887776554 3577899887 4577787776543
No 125
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=39.68 E-value=13 Score=26.06 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=5.9
Q ss_pred CccccccccccC
Q 020673 265 AECCICLSAYDD 276 (323)
Q Consensus 265 ~~C~ICL~~y~~ 276 (323)
-.|..|-..+.+
T Consensus 28 F~C~~C~~~L~~ 39 (76)
T 1iml_A 28 LKCEKCGKTLTS 39 (76)
T ss_dssp CBCTTTCCBCCT
T ss_pred CCccccCccCCC
Confidence 455555544443
No 126
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=38.92 E-value=22 Score=33.51 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=29.6
Q ss_pred CccccccccccCCCceEEeCCCCc--cchHhHHHHHhc--CCCCcccccccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHH--FHCACVDKWLYI--NATCPLCKYNIL 312 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~--FH~~CId~WL~~--~~tCPlCR~~i~ 312 (323)
..|++=...+..+ +|-..|.|. |-.+=+-....+ .-.||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4688777776554 688889997 554333222222 345999988763
No 127
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.24 E-value=3.2 Score=25.41 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=10.3
Q ss_pred CCccccccccccCCCc
Q 020673 264 DAECCICLSAYDDGVE 279 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~ 279 (323)
.-.|+||+.++...+.
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 3567888777665543
No 128
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=36.90 E-value=25 Score=33.01 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=30.1
Q ss_pred CccccccccccCCCceEEeCCCCc--cchHhHHHHHhcC--CCCcccccccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHH--FHCACVDKWLYIN--ATCPLCKYNIL 312 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~--FH~~CId~WL~~~--~tCPlCR~~i~ 312 (323)
..|+|=...++.+ +|-..|.|. |-..=.-....++ -.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4688777776554 688889997 6544333322333 45999998774
No 129
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=36.49 E-value=5.8 Score=27.47 Aligned_cols=41 Identities=29% Similarity=0.668 Sum_probs=24.4
Q ss_pred CccccccccccCCCceEEe-C--CC-CccchHhHHHHHhc----CCCCccccc
Q 020673 265 AECCICLSAYDDGVELREL-P--CG-HHFHCACVDKWLYI----NATCPLCKY 309 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L-P--C~-H~FH~~CId~WL~~----~~tCPlCR~ 309 (323)
...+||-... .++ ...- . |. .-||..|+. |.. +-.||.|+.
T Consensus 11 ~~yC~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYCLCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEETTTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEEECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4455998763 342 2221 2 33 689999997 332 335999965
No 130
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.02 E-value=33 Score=24.02 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
....|.-|-..+.+. ....-+..||.+|. +|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 346899999988753 23446789999873 5888887764
No 131
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.68 E-value=41 Score=21.63 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=14.6
Q ss_pred CCCChhhhHHHHhhhHHHHHhhhhhhhhhhcc
Q 020673 56 PNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSR 87 (323)
Q Consensus 56 p~~Pl~~WiigY~~~c~~~~~l~~~~~~~~~~ 87 (323)
+++|.-+=-+.-++..++.+.+++|-|+||++
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 45553322233333344445555566655554
No 132
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=35.56 E-value=11 Score=26.88 Aligned_cols=48 Identities=27% Similarity=0.445 Sum_probs=30.7
Q ss_pred CCccccccccccCCCceEEe-CCCCccchHhHHHHHh-----cCCCCccccccc
Q 020673 264 DAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLY-----INATCPLCKYNI 311 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~-----~~~tCPlCR~~i 311 (323)
...-+||-..+.++....+- .|.-=||..|+.---. ..-.||.|+..-
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 35567998887644333332 3778899999953221 235699997653
No 133
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.48 E-value=31 Score=24.44 Aligned_cols=40 Identities=20% Similarity=0.534 Sum_probs=30.3
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
....|.-|-..+.+++.+.. -+..||.+| .+|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 34679999999887776554 467899877 45888888775
No 134
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.12 E-value=50 Score=23.71 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=28.6
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
....|.-|-..+. ++.+ ..-+..||.+| ..|-.|+.++..
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEE--EECCccccccC--------CccCCCCCCCCC
Confidence 3467999998885 3333 34578899877 458889888764
No 135
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=34.72 E-value=9.3 Score=27.12 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=12.7
Q ss_pred HHHHhcCCCCccccccccC
Q 020673 295 DKWLYINATCPLCKYNILK 313 (323)
Q Consensus 295 d~WL~~~~tCPlCR~~i~~ 313 (323)
|+||..--.||.||.++.-
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 4566666778888877653
No 136
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.70 E-value=7.3 Score=27.63 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=26.0
Q ss_pred CccccccccccCCCceEEeCCC---CccchHhHHHHHhc----CCCCcccccccc
Q 020673 265 AECCICLSAYDDGVELRELPCG---HHFHCACVDKWLYI----NATCPLCKYNIL 312 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~---H~FH~~CId~WL~~----~~tCPlCR~~i~ 312 (323)
..-+||-... +++-+.---|+ .-||..|+. |.. +-.||.|+....
T Consensus 6 ~~yC~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 6 SGYCICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCCSTTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHHH
T ss_pred CeEEEcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcccc
Confidence 3455787763 33222111232 579999997 332 234999987654
No 137
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=31.53 E-value=45 Score=21.24 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=22.3
Q ss_pred CCCCCChhhhHHHHhhhHHHHHhh---hhhhhhhhcc
Q 020673 54 ERPNMPLRLWIVGYAIQCVLHMVC---VCVEYKRRSR 87 (323)
Q Consensus 54 E~p~~Pl~~WiigY~~~c~~~~~l---~~~~~~~~~~ 87 (323)
|.|..|=-.+|+++.++.++-+.+ +.|++.....
T Consensus 2 ~Cp~~~n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~ 38 (43)
T 2k9j_B 2 ESPKGPDILVVLLSVMGAILLIGLAALLIWKLLITIH 38 (43)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEeehHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 566666667788888888775554 5566554443
No 138
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.32 E-value=13 Score=25.45 Aligned_cols=16 Identities=31% Similarity=0.713 Sum_probs=12.1
Q ss_pred CCCCccccccccCCCC
Q 020673 301 NATCPLCKYNILKSSS 316 (323)
Q Consensus 301 ~~tCPlCR~~i~~~~~ 316 (323)
...||.|+..|.+.+.
T Consensus 6 ~k~CP~C~~~Iek~~G 21 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGG 21 (60)
T ss_dssp CCCCTTTCCCCSSCCS
T ss_pred ceECcCCCCeeEeCCC
Confidence 3679999998877543
No 139
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.54 E-value=96 Score=22.15 Aligned_cols=41 Identities=22% Similarity=0.478 Sum_probs=27.9
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
...|.-|-..+.+.+.+ ..-+..||.+| .+|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCC--------CeeCCCCCCCCCC
Confidence 35788888888776643 45667888877 3466777766543
No 140
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.70 E-value=25 Score=28.16 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCCcccccccccc--CCCceEEeCCCCccchHhHH
Q 020673 263 EDAECCICLSAYD--DGVELRELPCGHHFHCACVD 295 (323)
Q Consensus 263 ed~~C~ICL~~y~--~~~~lr~LPC~H~FH~~CId 295 (323)
++..|.+|...|. .+-...-.-|+|.++..|=.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4578999999984 23233333488999888744
No 141
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.65 E-value=7.6 Score=27.45 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=11.8
Q ss_pred HHHHhcCCCCccccccccC
Q 020673 295 DKWLYINATCPLCKYNILK 313 (323)
Q Consensus 295 d~WL~~~~tCPlCR~~i~~ 313 (323)
++||..--.||.||.++.-
T Consensus 4 d~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEE
T ss_pred CHHHHHHhCCCCCCCcCeE
Confidence 4555556667777776543
No 142
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.45 E-value=58 Score=23.48 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=24.2
Q ss_pred CCCCccccccccccCCCceEEe-CCCCccchHhHHH
Q 020673 262 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDK 296 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~ 296 (323)
.+...|.+|-..|.--..-.-- .|+++|+..|-..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3446899999998654322222 3899999999654
No 143
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.42 E-value=12 Score=21.85 Aligned_cols=13 Identities=31% Similarity=0.904 Sum_probs=9.2
Q ss_pred CCCCccccccccC
Q 020673 301 NATCPLCKYNILK 313 (323)
Q Consensus 301 ~~tCPlCR~~i~~ 313 (323)
+.+||+||.....
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4569999876654
No 144
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=29.28 E-value=63 Score=23.28 Aligned_cols=37 Identities=16% Similarity=0.382 Sum_probs=26.4
Q ss_pred CCCCCccccccccccCCCceEEe-CCCCccchHhHHHH
Q 020673 261 SNEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKW 297 (323)
Q Consensus 261 ~~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~W 297 (323)
..+...|.+|-..|.--..-.-- .|+++|+..|-...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34557899999999755432333 38899999997664
No 145
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.87 E-value=88 Score=22.25 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=29.6
Q ss_pred CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
....|.-|-..+.+ +. ...-+..||.+| .+|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccC--------CEecCCCCCCCCC
Confidence 34679999988875 22 334678999887 4588898887653
No 146
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.65 E-value=34 Score=24.02 Aligned_cols=32 Identities=28% Similarity=0.617 Sum_probs=25.0
Q ss_pred CCCCccccccccccCCCceEEeCC-CCccchHhHHHH
Q 020673 262 NEDAECCICLSAYDDGVELRELPC-GHHFHCACVDKW 297 (323)
Q Consensus 262 ~ed~~C~ICL~~y~~~~~lr~LPC-~H~FH~~CId~W 297 (323)
++..-|+||.++ ..+|-+.| +-.|+..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 455789999877 56888889 588999996664
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.54 E-value=54 Score=22.26 Aligned_cols=40 Identities=18% Similarity=0.487 Sum_probs=27.9
Q ss_pred CccccccccccC--CCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 265 AECCICLSAYDD--GVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 265 ~~C~ICL~~y~~--~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
..|.-|-..+.+ ++++ ...-+..||.+| .+|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcCCC
Confidence 569999888875 3333 233678899887 358888887753
No 148
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=27.87 E-value=6 Score=27.74 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=25.9
Q ss_pred CccccccccccCCCceEEe---CCCCccchHhHHHH---Hh-----cCCCCccccc
Q 020673 265 AECCICLSAYDDGVELREL---PCGHHFHCACVDKW---LY-----INATCPLCKY 309 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~L---PC~H~FH~~CId~W---L~-----~~~tCPlCR~ 309 (323)
..-+||-....++.-+ .- .|+.=||..|+.-= .. .+-.||.||.
T Consensus 10 ~v~C~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRCICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECCTTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEeECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3445897765555422 22 26677999998321 00 1346999974
No 149
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.34 E-value=62 Score=21.88 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=23.0
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL 312 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~ 312 (323)
..|.-|-..+..++.. ...=+..||.+| .+|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAG-VVALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCC-EECSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCceE-EEECCCeEcccC--------CcccccCCcCC
Confidence 4577777766653322 223456777766 34777777663
No 150
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.06 E-value=10 Score=29.22 Aligned_cols=26 Identities=31% Similarity=0.698 Sum_probs=16.0
Q ss_pred eCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 283 LPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 283 LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
..|++.|. +=+.....||.|++.=.+
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 34778881 112345779999985443
No 151
>2ei4_A AR 2, archaerhodopsin-2; membrane protein, retinal, bacterioruberin, proton pump, TRA protein; HET: GLC RET 22B L2P; 2.10A {Halobacterium SP} PDB: 1vgo_A* 2z55_A* 1uaz_A*
Probab=26.77 E-value=74 Score=28.01 Aligned_cols=65 Identities=15% Similarity=0.382 Sum_probs=39.3
Q ss_pred hccCccccchhhHHHHHHH-------H-HHHHHHhhhhhcc-CCCCCCCChhhhHHHHhhhHHHHHhhhhhhhhh
Q 020673 19 RQSDWAYSKPVVVLDIIWN-------L-AFVAVAFSVMVLS-QNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKR 84 (323)
Q Consensus 19 ~~~~~~~~~~~i~~~~~~~-------l-~qiv~~i~vL~ls-~~E~p~~Pl~~WiigY~~~c~~~~~l~~~~~~~ 84 (323)
|--||--.-|++.+|+... + ..|+++++|++.- -.|--......| .+|+++|+.-+.++|.-+..
T Consensus 87 RYidWllTvPLllve~~Llag~~~~~~~~li~as~vMiv~G~~Ge~~~~~~~kw-~~f~is~~~~l~Ily~l~~~ 160 (253)
T 2ei4_A 87 RYADWLFTTPLLLLDLALLAKVDRVTIGTLIGVDALMIVTGLIGALSKTPLARY-TWWLFSTIAFLFVLYYLLTS 160 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHH-HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 7778888899999998642 1 1244455544431 122211122344 56899999988888766543
No 152
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=26.69 E-value=17 Score=20.00 Aligned_cols=8 Identities=50% Similarity=0.654 Sum_probs=5.2
Q ss_pred cccchhhH
Q 020673 24 AYSKPVVV 31 (323)
Q Consensus 24 ~~~~~~i~ 31 (323)
.|||||++
T Consensus 10 tcskpwlv 17 (26)
T 1loi_A 10 TCSKPWLV 17 (26)
T ss_dssp TSSCTTGG
T ss_pred hcCCchhh
Confidence 46777764
No 153
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.13 E-value=65 Score=22.08 Aligned_cols=42 Identities=19% Similarity=0.503 Sum_probs=29.2
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
...|.-|-..+..++.+.. .-+..||.+| .+|-.|+.++..+
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCCCCC
Confidence 3679999998876554422 2467888877 4588888877654
No 154
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=25.83 E-value=70 Score=20.54 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=8.4
Q ss_pred HHHHHhhhhhhhhhhcc
Q 020673 71 CVLHMVCVCVEYKRRSR 87 (323)
Q Consensus 71 c~~~~~l~~~~~~~~~~ 87 (323)
.++.+.+++|-|+||++
T Consensus 22 ~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 22 ILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 33344455555655543
No 155
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=24.89 E-value=13 Score=24.50 Aligned_cols=44 Identities=16% Similarity=0.418 Sum_probs=26.7
Q ss_pred ccccccccccCCCceEEeCCCCccchHhHHHHHh---cCCCCccccc
Q 020673 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLY---INATCPLCKY 309 (323)
Q Consensus 266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~---~~~tCPlCR~ 309 (323)
.=+||-..+.++.-+.--.|+.=||..|+.-=-. .+-.||.|+.
T Consensus 5 ~~C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 5 VTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp BCSTTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred eEEEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 4458877665333333223778899999863221 2356888864
No 156
>2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus}
Probab=24.64 E-value=53 Score=18.27 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhh
Q 020673 33 DIIWNLAFVAVAFSVM 48 (323)
Q Consensus 33 ~~~~~l~qiv~~i~vL 48 (323)
|+.|.++.+++.=+|-
T Consensus 3 emawkiakmiv~dvmq 18 (26)
T 2hwn_E 3 ELAWKIAKMIVSDVMQ 18 (26)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7899999998887663
No 157
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=24.09 E-value=30 Score=26.32 Aligned_cols=13 Identities=23% Similarity=0.669 Sum_probs=11.0
Q ss_pred ccchHhHHHHHhc
Q 020673 288 HFHCACVDKWLYI 300 (323)
Q Consensus 288 ~FH~~CId~WL~~ 300 (323)
-|+..|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999963
No 158
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.75 E-value=31 Score=26.22 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=10.7
Q ss_pred ccchHhHHHHHh
Q 020673 288 HFHCACVDKWLY 299 (323)
Q Consensus 288 ~FH~~CId~WL~ 299 (323)
-|+..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999996
No 159
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.58 E-value=41 Score=22.79 Aligned_cols=39 Identities=18% Similarity=0.410 Sum_probs=26.1
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
..|.-|-..+.+ +.+ ..-+..||.+|. +|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVI--KAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-CCE--EETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEecc-eEE--EECcccccccCC--------EeCCCCCcCCCC
Confidence 568888887763 322 234678888773 578888777654
No 160
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.26 E-value=53 Score=22.22 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=27.7
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
..|.-|-..+.+++++ ...-+..||.+| .+|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCCCC
Confidence 4688888888765432 233577888876 3578888777643
No 161
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=22.83 E-value=54 Score=29.16 Aligned_cols=67 Identities=13% Similarity=0.344 Sum_probs=39.8
Q ss_pred hhhccCccccchhhHHHHHHH-----------HHH-HHHHhhhhhcc-CCCCCCCChhhhHHHHhhhHHHHHhhhhhhhh
Q 020673 17 EERQSDWAYSKPVVVLDIIWN-----------LAF-VAVAFSVMVLS-QNERPNMPLRLWIVGYAIQCVLHMVCVCVEYK 83 (323)
Q Consensus 17 ~~~~~~~~~~~~~i~~~~~~~-----------l~q-iv~~i~vL~ls-~~E~p~~Pl~~WiigY~~~c~~~~~l~~~~~~ 83 (323)
--|--||--.-|++.+|+..- +.. |+++++|++.- -.|--......| .+|+++|+.-+.++|.-+.
T Consensus 70 ~~RYiDWllTvPLllvel~Li~l~~ag~~~~~~~~li~as~vMiv~G~~Ge~~~~~~~kw-~~f~is~~~~l~Ily~l~~ 148 (261)
T 1xio_A 70 YARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVRY-LWYICGVCAFLIILWGIWN 148 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred eeHHhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHccCchHHH-HHHHHHHHHHHHHHHHHHH
Confidence 447778888899999998865 222 44444444431 122111111233 4578899888888776554
Q ss_pred h
Q 020673 84 R 84 (323)
Q Consensus 84 ~ 84 (323)
.
T Consensus 149 ~ 149 (261)
T 1xio_A 149 P 149 (261)
T ss_dssp H
T ss_pred H
Confidence 3
No 162
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.24 E-value=8.7 Score=26.08 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=13.7
Q ss_pred HHHHhcCCCCccccccccC
Q 020673 295 DKWLYINATCPLCKYNILK 313 (323)
Q Consensus 295 d~WL~~~~tCPlCR~~i~~ 313 (323)
|+||..--.||.||.++..
T Consensus 4 d~~lL~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLEE 22 (56)
T ss_dssp CCSCTTSCCCSSSCSCEEE
T ss_pred CHHHHhheeCCCCCCccee
Confidence 4556666789999998653
No 163
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=22.13 E-value=28 Score=23.81 Aligned_cols=41 Identities=24% Similarity=0.510 Sum_probs=27.8
Q ss_pred CccccccccccCCCceEEeC-CCCccchHhHHHHHh-cCCCCccc
Q 020673 265 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-INATCPLC 307 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~-~~~tCPlC 307 (323)
..|--|...+.+... ..-| |+++|..+| |.... .=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~-y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHV-YVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEE-ECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCcc-EECCccCcCcccch-hHHHHhhccCCcCC
Confidence 359999999865432 2344 999999999 44432 33679988
No 164
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.13 E-value=92 Score=20.84 Aligned_cols=38 Identities=18% Similarity=0.478 Sum_probs=26.1
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~ 313 (323)
..|.-|-..+.++ . ...-+..||.+| .+|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~-~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G--VTYREQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCSS-E--EESSSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCcccCCeeccc-e--EEECccccCCCC--------CccCCCCCcCCc
Confidence 4688888887643 2 334578888876 358888887753
No 165
>1m0k_A BR, bacteriorhodopsin; ION pump, membrane protein, retinal protein, lipids, photore haloarchaea, 7-transmembrane, serpentine; HET: RET LI1 SQU; 1.43A {Halobacterium salinarum} SCOP: f.13.1.1 PDB: 1m0l_A* 1m0m_A* 2zfe_A* 2zzl_A* 1p8h_A* 1o0a_A* 1py6_A* 1r2n_A* 1ucq_A* 1vjm_A* 2ntu_A* 2ntw_A* 3har_A* 1c8r_A* 2wjk_A* 2wjl_A* 2i21_A* 1p8i_A* 1p8u_A* 3han_A* ...
Probab=22.07 E-value=90 Score=27.68 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=38.2
Q ss_pred hccCccccchhhHHHHHHH-------HH-HHHHHhhhhhcc-CCCCCCCChhhhHHHHhhhHHHHHhhhhhhhh
Q 020673 19 RQSDWAYSKPVVVLDIIWN-------LA-FVAVAFSVMVLS-QNERPNMPLRLWIVGYAIQCVLHMVCVCVEYK 83 (323)
Q Consensus 19 ~~~~~~~~~~~i~~~~~~~-------l~-qiv~~i~vL~ls-~~E~p~~Pl~~WiigY~~~c~~~~~l~~~~~~ 83 (323)
|--||--.-|++.+|+... +. .|+++++|++.- -.|--......| .+|+++|+.-+.++|.-+.
T Consensus 95 RYidWllTvPLllve~~Llag~~~~~~~~li~as~vMiv~G~~Ge~~~~~~~kw-~~f~is~~a~l~Ily~l~~ 167 (262)
T 1m0k_A 95 RYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRF-VWWAISTAAMLYILYVLFF 167 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHHHHHHH
Confidence 6778888899999998642 11 244455544431 112111112344 5689999998888775554
No 166
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.95 E-value=32 Score=24.13 Aligned_cols=40 Identities=25% Similarity=0.552 Sum_probs=28.2
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
..|..|-..+.+++.++ .-+..||.+| .+|-.|+.++...
T Consensus 8 ~~C~~C~~~I~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQ--CDGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEE--ETTEEEESSS--------EECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEE--eCCccccccc--------CccCCCCCCCCCC
Confidence 57999988887776443 3567888876 3477888777554
No 167
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.52 E-value=80 Score=22.04 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=27.5
Q ss_pred CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
...|.-|-..+. ++.+ ..-+..||.+| .+|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCC--------CEeCCCCCccCCC
Confidence 367989988877 3322 23567888877 4688888877644
No 168
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=21.35 E-value=46 Score=22.38 Aligned_cols=41 Identities=20% Similarity=0.531 Sum_probs=29.9
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
..|.-|-..+..++.+.. .=+..||.+|. .|-.|+.++..+
T Consensus 12 ~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp CBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred ccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 579999999887765432 34677998875 588888887654
No 169
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=20.83 E-value=74 Score=23.30 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=25.8
Q ss_pred CCCccccccccccCCCceEEe-CCCCccchHhHHHHH
Q 020673 263 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWL 298 (323)
Q Consensus 263 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL 298 (323)
+...|.+|-..|.--..-..- .|++.|+..|.....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 346799999999755432333 399999999977654
No 170
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.72 E-value=91 Score=21.62 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=29.6
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
..|.-|-..+..++.+ ...=+..||.+| .+|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceE-EEECcccccccc--------CchhhCCCccCCC
Confidence 5799999988876643 233578899877 4588888887654
No 171
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.63 E-value=78 Score=21.32 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=27.8
Q ss_pred CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314 (323)
Q Consensus 265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~ 314 (323)
..|.-|-..+.+++.+.. .=+..||.+| .+|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccC--------CcccccCCccCCC
Confidence 468889888887653322 2467888876 4588888877654
No 172
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.29 E-value=71 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=23.2
Q ss_pred CCccccccccccCCCceEEe-CCCCccchHhHHH
Q 020673 264 DAECCICLSAYDDGVELREL-PCGHHFHCACVDK 296 (323)
Q Consensus 264 d~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~ 296 (323)
+..|.+|-..|.--..-.-- .|+++|...|-..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 35899999998754322223 3889999999653
No 173
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.22 E-value=9.9 Score=26.89 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=13.3
Q ss_pred HHHhcCCCCccccccccCC
Q 020673 296 KWLYINATCPLCKYNILKS 314 (323)
Q Consensus 296 ~WL~~~~tCPlCR~~i~~~ 314 (323)
+||..--.||.||.++.-.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp CSSSCCCBCSSSCCBCEEE
T ss_pred hHHhhheECCCCCCcCeEe
Confidence 4555566799999887543
Done!