Query 020674
Match_columns 323
No_of_seqs 108 out of 131
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 04:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05637 Glyco_transf_34: gala 43.2 27 0.00059 32.7 3.6 39 131-170 57-95 (239)
2 PF13506 Glyco_transf_21: Glyc 42.0 1E+02 0.0022 27.3 6.8 127 138-280 19-156 (175)
3 PF03935 SKN1: Beta-glucan syn 29.5 82 0.0018 33.4 4.8 78 10-87 46-152 (504)
4 PF01501 Glyco_transf_8: Glyco 25.2 60 0.0013 28.5 2.6 21 150-170 97-117 (250)
5 cd06437 CESA_CaSu_A2 Cellulose 24.8 68 0.0015 28.3 2.8 27 137-165 75-101 (232)
6 cd04191 Glucan_BSP_ModH Glucan 22.4 81 0.0018 29.6 3.0 30 137-166 81-110 (254)
7 PRK05454 glucosyltransferase M 20.3 86 0.0019 34.3 3.0 30 137-166 206-235 (691)
8 cd06434 GT2_HAS Hyaluronan syn 20.1 1.2E+02 0.0025 26.4 3.4 28 137-166 65-92 (235)
9 PF13641 Glyco_tranf_2_3: Glyc 19.5 1.3E+02 0.0027 26.2 3.4 27 136-164 73-99 (228)
10 PRK11498 bcsA cellulose syntha 19.1 85 0.0019 35.2 2.7 27 137-165 327-353 (852)
No 1
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=43.20 E-value=27 Score=32.74 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=24.9
Q ss_pred cCcccCchhHHHHHHHhcCCCccEEEEecCCeeeecCCCC
Q 020674 131 GYIVLNRPWAFVQWLEKATIEEEYILMAEPDHIFVKPLPN 170 (323)
Q Consensus 131 ~Y~v~NKP~A~~qWL~~a~i~e~~IlmlDpD~I~~rPl~~ 170 (323)
....-.|+.++++-|++-+ +.+||+-+|+|-||+.|=.+
T Consensus 57 ~~~~W~K~~~lr~~m~~~P-~~~wv~~lD~Dali~n~~~~ 95 (239)
T PF05637_consen 57 RPGSWAKIPALRAAMKKYP-EAEWVWWLDSDALIMNPDFS 95 (239)
T ss_dssp HHHHHTHHHHHHHHHHH-T-T-SEEEEE-TTEEE------
T ss_pred CChhhHHHHHHHHHHHhCC-CCCEEEEEcCCeEEEecccc
Confidence 3445779999999997643 67999999999999997654
No 2
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=42.02 E-value=1e+02 Score=27.26 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=71.0
Q ss_pred hhHHHHHHHhcCCCccEEEEecCCeeeecCCC-----CCCCCCCC-CccccccccCCChHHHHHhh----ccCCCCCCcc
Q 020674 138 PWAFVQWLEKATIEEEYILMAEPDHIFVKPLP-----NLAQGNHP-AGFPFFYIKPAEHEKIIRKF----YPEEMGPVTN 207 (323)
Q Consensus 138 P~A~~qWL~~a~i~e~~IlmlDpD~I~~rPl~-----~~a~~g~p-~a~~f~Yi~p~~~e~~l~k~----~p~~~gp~~~ 207 (323)
=+.+.+.+++ ..+.++|+++|+|...-.=.. +++.++.. +...+.+.........+... ++....-...
T Consensus 19 v~nL~~~~~~-~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 97 (175)
T PF13506_consen 19 VNNLAQGLEA-GAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGG 97 (175)
T ss_pred HHHHHHHHHh-hCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcC
Confidence 3456666666 688999999999997532110 11222222 22233333333322222211 1110000122
Q ss_pred cCC-CCCcceEEeHhHHHhhhHHHHHhHhhhccCcchhchhhhHHHHHHHHHHHHhhCCccccccccccCCCCC
Q 020674 208 VDP-IGNSPVIIKKYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWD 280 (323)
Q Consensus 208 ~d~-vG~sP~im~~~DL~riAP~W~~~t~~vr~D~ea~~~~gWV~EMYaYs~AAA~~gv~H~l~~~lmiqPp~d 280 (323)
... .|+ -+++++++|+++- -...++ ..++|=|..+-..+..|.++.+......|..-+
T Consensus 98 ~~~~~G~-~m~~rr~~L~~~G-G~~~l~-------------~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~ 156 (175)
T PF13506_consen 98 APFAWGG-SMAFRREALEEIG-GFEALA-------------DYLADDYALGRRLRARGYRVVLSPYPVVQTSVP 156 (175)
T ss_pred CCceecc-eeeeEHHHHHHcc-cHHHHh-------------hhhhHHHHHHHHHHHCCCeEEEcchheeecccC
Confidence 333 465 6899999998763 111111 478888888888999999999988766666554
No 3
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=29.49 E-value=82 Score=33.43 Aligned_cols=78 Identities=19% Similarity=0.440 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHhhheeeeecCCccc---------ccC-----------CCCccccccccCCCCCCCCeeEEEEee
Q 020674 10 SSFLLVLLALGFFFATYNLLTMVIQNKAAD---------EIG-----------KLNPLTQMPEKTGGGNSGMRFHVALTA 69 (323)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----------~~~~~~~~~~~~~~~~~~~~~H~vfSt 69 (323)
..|++++++|.++|+.|=+|+.+....... .++ -.||-+.--+..+....++.++.|||-
T Consensus 46 g~LilL~lGLL~LFigyPIlt~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~liDpdTP~~a~t~~~~~g~~~~LvfSD 125 (504)
T PF03935_consen 46 GGLILLILGLLMLFIGYPILTFFGKTNHSTSGGNLGGINASGQYPLLSNIRTGLIDPDTPESAYTRTSSDGRTYKLVFSD 125 (504)
T ss_pred HHHHHHHHHHHHHHHHhhheeEEecccccccccccccccccccCcccccccccccCCCCCHHHhheeCCCCCEeeEEEeh
Confidence 345556666778899999999875332111 111 134443222222223357889999975
Q ss_pred C----CCCc-----cchhhhhhhhhHH
Q 020674 70 T----DAIY-----SQWQSRIMYYWYK 87 (323)
Q Consensus 70 ~----cs~Y-----~~WQsrvmy~s~k 87 (323)
+ +-.+ +-|++.=++|+.-
T Consensus 126 EFn~~gRtF~~gdDp~w~a~~~~y~~t 152 (504)
T PF03935_consen 126 EFNTDGRTFYPGDDPFWTAVDLHYWAT 152 (504)
T ss_pred hhCCCCCccCCCCccceecccccccCC
Confidence 4 2222 5677777776553
No 4
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=25.21 E-value=60 Score=28.50 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=16.6
Q ss_pred CCccEEEEecCCeeeecCCCC
Q 020674 150 IEEEYILMAEPDHIFVKPLPN 170 (323)
Q Consensus 150 i~e~~IlmlDpD~I~~rPl~~ 170 (323)
.+.+-||.+|+|+|+++++..
T Consensus 97 ~~~drilyLD~D~lv~~dl~~ 117 (250)
T PF01501_consen 97 PDYDRILYLDADTLVLGDLDE 117 (250)
T ss_dssp TTSSEEEEE-TTEEESS-SHH
T ss_pred hhcCeEEEEcCCeeeecChhh
Confidence 456999999999999999974
No 5
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=24.82 E-value=68 Score=28.26 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=22.1
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 020674 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (323)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 165 (323)
|+.|+..-++.+ +.+||+++|+|.++-
T Consensus 75 k~~a~n~g~~~a--~~~~i~~~DaD~~~~ 101 (232)
T cd06437 75 KAGALAEGMKVA--KGEYVAIFDADFVPP 101 (232)
T ss_pred chHHHHHHHHhC--CCCEEEEEcCCCCCC
Confidence 677777777766 679999999999863
No 6
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=22.40 E-value=81 Score=29.62 Aligned_cols=30 Identities=7% Similarity=0.247 Sum_probs=23.3
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeeec
Q 020674 137 RPWAFVQWLEKATIEEEYILMAEPDHIFVK 166 (323)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~r 166 (323)
|-.++...+++...+.+||+++|+|.+.-.
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p 110 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMSG 110 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCCH
Confidence 566777777765567799999999998743
No 7
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=20.32 E-value=86 Score=34.26 Aligned_cols=30 Identities=7% Similarity=0.213 Sum_probs=26.0
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeeec
Q 020674 137 RPWAFVQWLEKATIEEEYILMAEPDHIFVK 166 (323)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~r 166 (323)
|-+.+.+|++...-+.|||+++|+|.++-+
T Consensus 206 KaGNl~~~~~~~~~~~eyivvLDADs~m~~ 235 (691)
T PRK05454 206 KAGNIADFCRRWGGAYDYMVVLDADSLMSG 235 (691)
T ss_pred cHHHHHHHHHhcCCCcCEEEEEcCCCCCCH
Confidence 678899999987778899999999998744
No 8
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=20.15 E-value=1.2e+02 Score=26.45 Aligned_cols=28 Identities=7% Similarity=0.316 Sum_probs=22.8
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeeec
Q 020674 137 RPWAFVQWLEKATIEEEYILMAEPDHIFVK 166 (323)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~r 166 (323)
|..|+..-++.+ +.+||+++|+|-++-.
T Consensus 65 ~~~a~n~g~~~a--~~d~v~~lD~D~~~~~ 92 (235)
T cd06434 65 KRRALAEGIRHV--TTDIVVLLDSDTVWPP 92 (235)
T ss_pred hHHHHHHHHHHh--CCCEEEEECCCceeCh
Confidence 567777777776 7899999999999854
No 9
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=19.49 E-value=1.3e+02 Score=26.19 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=18.8
Q ss_pred CchhHHHHHHHhcCCCccEEEEecCCeee
Q 020674 136 NRPWAFVQWLEKATIEEEYILMAEPDHIF 164 (323)
Q Consensus 136 NKP~A~~qWL~~a~i~e~~IlmlDpD~I~ 164 (323)
.|..|+.+=++++. .+||+++|+|.++
T Consensus 73 ~k~~a~n~~~~~~~--~d~i~~lD~D~~~ 99 (228)
T PF13641_consen 73 GKARALNEALAAAR--GDYILFLDDDTVL 99 (228)
T ss_dssp HHHHHHHHHHHH-----SEEEEE-SSEEE
T ss_pred hHHHHHHHHHHhcC--CCEEEEECCCcEE
Confidence 45667777777754 8899999999887
No 10
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=19.10 E-value=85 Score=35.24 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.1
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 020674 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (323)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 165 (323)
|.+++.+.|+++ +.|||+++|+|++.-
T Consensus 327 KAGnLN~aL~~a--~GEyIavlDAD~ip~ 353 (852)
T PRK11498 327 KAGNINNALKYA--KGEFVAIFDCDHVPT 353 (852)
T ss_pred hHHHHHHHHHhC--CCCEEEEECCCCCCC
Confidence 678889999886 679999999999953
Done!