Query 020674
Match_columns 323
No_of_seqs 108 out of 131
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 06:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulb_A Target of rapamycin com 19.3 54 0.0019 27.3 2.2 38 152-189 28-68 (121)
2 2l9a_X LAK160-P12; cationic, p 17.1 28 0.00097 21.4 0.0 17 223-239 7-23 (26)
3 3ffy_A Putative tetrapyrrole ( 14.7 1.2E+02 0.0039 24.0 3.1 43 116-160 70-112 (115)
4 2lk9_A Bone marrow stromal ant 14.4 64 0.0022 21.4 1.2 22 7-28 8-29 (35)
5 1rrp_B Nuclear pore complex pr 12.4 86 0.0029 25.7 1.7 39 44-82 2-46 (134)
6 2ium_A Avian adenovirus CELO l 11.3 97 0.0033 28.3 1.8 23 99-123 38-60 (248)
7 1ll2_A Glycogenin-1; protein-s 10.1 1.4E+02 0.0046 27.9 2.4 103 61-171 3-114 (333)
8 1g9r_A Glycosyl transferase; a 8.6 1.6E+02 0.0055 26.6 2.3 21 151-171 95-115 (311)
9 4hg6_A Cellulose synthase subu 8.3 2.2E+02 0.0075 29.6 3.4 26 137-164 226-251 (802)
10 2zjr_K 50S ribosomal protein L 8.0 1.7E+02 0.0057 24.1 1.9 14 95-108 89-102 (116)
No 1
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=19.28 E-value=54 Score=27.34 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=29.9
Q ss_pred ccEEEEecCCeeeecCCCC---CCCCCCCCccccccccCCC
Q 020674 152 EEYILMAEPDHIFVKPLPN---LAQGNHPAGFPFFYIKPAE 189 (323)
Q Consensus 152 e~~IlmlDpD~I~~rPl~~---~a~~g~p~a~~f~Yi~p~~ 189 (323)
.+=+|.||.|+|-+-|-.. +-..|...++.|.-|++|+
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K 68 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVK 68 (121)
T ss_dssp EEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEE
T ss_pred ccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEE
Confidence 5778999999999999853 3346788899999999887
No 2
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=17.09 E-value=28 Score=21.37 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=14.0
Q ss_pred HHhhhHHHHHhHhhhcc
Q 020674 223 LEEISPTWLNVSLRMKD 239 (323)
Q Consensus 223 L~riAP~W~~~t~~vr~ 239 (323)
|.++||+|-.++.+.+.
T Consensus 7 laklaplwkalalklkk 23 (26)
T 2l9a_X 7 LAKLAPLWKALALKLKK 23 (26)
T ss_dssp SSSSCTHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 56899999999887764
No 3
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=14.66 E-value=1.2e+02 Score=24.03 Aligned_cols=43 Identities=7% Similarity=0.003 Sum_probs=28.8
Q ss_pred CCceEeCCCCCCCCCcCcccCchhHHHHHHHhcCCCccEEEEecC
Q 020674 116 IPSFVVDPLPEGLDRGYIVLNRPWAFVQWLEKATIEEEYILMAEP 160 (323)
Q Consensus 116 iPTfvvdpl~~~~dd~Y~v~NKP~A~~qWL~~a~i~e~~IlmlDp 160 (323)
-|-+++.-+.-. ..-...-.-.-+.+|++...++.++|+++++
T Consensus 70 ~~v~v~relTk~--~E~~~rgtl~el~~~~~~~~~kGe~vivv~~ 112 (115)
T 3ffy_A 70 RQVSVSREISKI--HEETVRGTLSELIEHFTATDPRGEIVIVLAG 112 (115)
T ss_dssp CEEEEEEESSSS--CEEEEEEEHHHHHHHHHHSCCCSSEEEEECC
T ss_pred CEEEeeeccCCC--ceEEEEeeHHHHHHHHHhcCCCCCEEEEEeC
Confidence 344454444321 2234455567789999988999999999985
No 4
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=14.42 E-value=64 Score=21.42 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=15.7
Q ss_pred CCchhHHHHHHHHHHHHHHhhh
Q 020674 7 LGVSSFLLVLLALGFFFATYNL 28 (323)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (323)
|-+-..+|+.++||..++.|-.
T Consensus 8 g~Gvl~LLviV~LgV~LI~f~~ 29 (35)
T 2lk9_A 8 GIGILVLLIIVILGVPLIIFTI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHhcchheEEee
Confidence 4556677788889988887743
No 5
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=12.42 E-value=86 Score=25.68 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=30.6
Q ss_pred CCccccccccCCCCCCCCeeEEEEeeCCCCcc------chhhhhh
Q 020674 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS------QWQSRIM 82 (323)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~H~vfSt~cs~Y~------~WQsrvm 82 (323)
+.|++++|.+..-.+....=.++|+.-|.-|. .|.-|+.
T Consensus 2 ~~pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~ 46 (134)
T 1rrp_B 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGI 46 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEE
T ss_pred cccceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcE
Confidence 56999999877766667777899999998875 4777664
No 6
>2ium_A Avian adenovirus CELO long fibre; receptor-binding, trimeric proteins, viral fibres, beta-sandwich, fiber protein, viral protein; 1.6A {Avian adenovirus GAL1} PDB: 2iun_A
Probab=11.30 E-value=97 Score=28.29 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=16.1
Q ss_pred CceEEEecCCCCCccCCCCceEeCC
Q 020674 99 KFTRILHSGKADNLMDEIPSFVVDP 123 (323)
Q Consensus 99 ~fTRILhsg~~D~LmdeiPTfvvdp 123 (323)
+.|||.||| |.|.|.---|-.-|
T Consensus 38 p~~~~~~~g--~nl~~sy~ifas~p 60 (248)
T 2ium_A 38 PEVATYHCG--DNLLESYDIFASLP 60 (248)
T ss_dssp CCEEEEEEE--CTTCCCCCEEEEET
T ss_pred ceeEEEeec--cchhhhHHHHhhCc
Confidence 469999998 77777655554433
No 7
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=10.08 E-value=1.4e+02 Score=27.88 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=51.0
Q ss_pred CeeEEEEeeCCCCccchhhhhhhhhHHhhhcCCCCCCCCceEEEec-CCCCC----ccCCCCce-EeCCCCCCCCCcCcc
Q 020674 61 MRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHS-GKADN----LMDEIPSF-VVDPLPEGLDRGYIV 134 (323)
Q Consensus 61 ~~~H~vfSt~cs~Y~~WQsrvmy~s~kk~~~~~ggq~G~fTRILhs-g~~D~----LmdeiPTf-vvdpl~~~~dd~Y~v 134 (323)
+..++++++|. .|- =++.++.+|.++.. ..-.+. ||.. +-+++ |...-.+. .++++..........
T Consensus 3 ~~a~vt~~~d~-~Yl-~~a~vl~~SL~~~~-----s~~~l~-vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~ 74 (333)
T 1ll2_A 3 DQAFVTLTTND-AYA-KGALVLGSSLKQHR-----TSRRLA-VLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTL 74 (333)
T ss_dssp SEEEEEEESSH-HHH-HHHHHHHHHHHHTT-----CCSEEE-EEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHH
T ss_pred ceEEEEEEeCH-HHH-HHHHHHHHHHHHhC-----CCCCEE-EEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhccc
Confidence 34667776554 454 37888888888763 112222 2422 21222 21111222 233333221111111
Q ss_pred cCchhHHHHHHHhc--C-CCccEEEEecCCeeeecCCCCC
Q 020674 135 LNRPWAFVQWLEKA--T-IEEEYILMAEPDHIFVKPLPNL 171 (323)
Q Consensus 135 ~NKP~A~~qWL~~a--~-i~e~~IlmlDpD~I~~rPl~~~ 171 (323)
++||.--.-|.+-. + .+-+-||-||+|+|+++++..+
T Consensus 75 ~~~~~~~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eL 114 (333)
T 1ll2_A 75 MKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDL 114 (333)
T ss_dssp HHCGGGHHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGG
T ss_pred ccccchHHHHHHHHHhHhcCCCeEEEEeCCEEeccCHHHH
Confidence 23443222233221 2 3458999999999999998764
No 8
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=8.60 E-value=1.6e+02 Score=26.62 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.1
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 020674 151 EEEYILMAEPDHIFVKPLPNL 171 (323)
Q Consensus 151 ~e~~IlmlDpD~I~~rPl~~~ 171 (323)
+-+-||-+|+|+|+++++..+
T Consensus 95 ~~~kvlyLD~D~iv~~di~eL 115 (311)
T 1g9r_A 95 DCDKVLYLDIDVLVRDSLTPL 115 (311)
T ss_dssp SCSCEEEECSSEEECSCCHHH
T ss_pred hcCEEEEEcCCeEeccCHHHH
Confidence 458899999999999998753
No 9
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=8.32 E-value=2.2e+02 Score=29.59 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.3
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeee
Q 020674 137 RPWAFVQWLEKATIEEEYILMAEPDHIF 164 (323)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 164 (323)
|..|+.+-++++ +.|||+++|+|.+.
T Consensus 226 Ka~alN~gl~~a--~gd~Il~lDaD~~~ 251 (802)
T 4hg6_A 226 KAGNMSAALERL--KGELVVVFDADHVP 251 (802)
T ss_dssp HHHHHHHHHHHC--CCSEEEECCTTEEE
T ss_pred chHHHHHHHHhc--CCCEEEEECCCCCc
Confidence 677788888887 67999999999987
No 10
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=7.97 E-value=1.7e+02 Score=24.08 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=11.6
Q ss_pred CCCCCceEEEecCC
Q 020674 95 SDMGKFTRILHSGK 108 (323)
Q Consensus 95 gq~G~fTRILhsg~ 108 (323)
+..|++|||+-+|.
T Consensus 89 ~R~GGYTRI~K~~~ 102 (116)
T 2zjr_K 89 ERPGGYTRILRVGT 102 (116)
T ss_dssp TSCSCCCEEEECCC
T ss_pred CCCCCeeEEEECCC
Confidence 67899999998763
Done!