Query 020674
Match_columns 323
No_of_seqs 108 out of 131
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 06:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020674.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020674hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ll2a_ c.68.1.14 (A:) Glycoge 20.7 22 0.0016 29.0 2.3 22 150-171 93-114 (263)
2 d1ga8a_ c.68.1.4 (A:) Galactos 15.3 33 0.0024 28.1 2.1 21 151-171 95-115 (282)
3 d1rrpb_ b.55.1.3 (B:) Nuclear 14.5 32 0.0023 26.0 1.7 39 44-82 2-46 (134)
4 d1k1ga_ d.51.1.1 (A:) RNA spli 13.4 57 0.0041 24.8 2.9 17 55-71 62-78 (122)
5 d1omza_ c.68.1.15 (A:) Alpha-1 12.7 51 0.0037 24.2 2.4 15 150-164 80-94 (265)
6 d1z8ua1 a.7.11.1 (A:2-91) Alph 11.1 44 0.0032 24.5 1.4 20 216-235 29-48 (90)
7 d1lzia_ c.68.1.9 (A:) Glycosyl 9.9 59 0.0043 28.4 2.1 21 151-171 141-161 (283)
8 d1yfua1 b.82.1.20 (A:1-174) 3- 9.8 67 0.0049 26.2 2.3 15 134-148 3-17 (174)
9 d1o7qa_ c.68.1.9 (A:) alpha-1, 9.7 58 0.0042 28.5 2.0 21 151-171 136-156 (287)
10 d1vioa1 d.265.1.3 (A:58-231) R 9.4 21 0.0016 27.9 -1.0 14 129-142 2-15 (174)
No 1
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=20.73 E-value=22 Score=28.96 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=19.1
Q ss_pred CCccEEEEecCCeeeecCCCCC
Q 020674 150 IEEEYILMAEPDHIFVKPLPNL 171 (323)
Q Consensus 150 i~e~~IlmlDpD~I~~rPl~~~ 171 (323)
.+.+-||-||+|+|+++++..+
T Consensus 93 ~~ydkvlYLDaD~lv~~~id~L 114 (263)
T d1ll2a_ 93 TQYSKCVFMDADTLVLANIDDL 114 (263)
T ss_dssp TTCSEEEEECTTEEECSCCGGG
T ss_pred cccceEEEeCCCEEEecCHHHH
Confidence 3568999999999999999764
No 2
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=15.30 E-value=33 Score=28.13 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=17.6
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 020674 151 EEEYILMAEPDHIFVKPLPNL 171 (323)
Q Consensus 151 ~e~~IlmlDpD~I~~rPl~~~ 171 (323)
+-+-||-+|+|+|+++++..+
T Consensus 95 ~~~kiiyLD~D~iv~~dl~~L 115 (282)
T d1ga8a_ 95 DCDKVLYLDIDVLVRDSLTPL 115 (282)
T ss_dssp SCSCEEEECSSEEECSCCHHH
T ss_pred ccceEEEecCCEEEecchHHH
Confidence 346799999999999998753
No 3
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.55 E-value=32 Score=26.03 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=27.0
Q ss_pred CCccccccccCCCCCCCCeeEEEEeeCCCCcc------chhhhhh
Q 020674 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS------QWQSRIM 82 (323)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~H~vfSt~cs~Y~------~WQsrvm 82 (323)
+.|++++|.+..-.+....=-++|+.-|..|. .|+.|+.
T Consensus 2 f~p~~~l~~~v~~~tgEE~E~~if~~r~KL~~~~~~~~~WkerGv 46 (134)
T d1rrpb_ 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGI 46 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEE
T ss_pred ccCcccCCCccceecCccCcEEEEEEeeEEEEEcCCCCceeeeeE
Confidence 56999999877644444445778888887754 4776665
No 4
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.36 E-value=57 Score=24.76 Aligned_cols=17 Identities=18% Similarity=0.049 Sum_probs=12.9
Q ss_pred CCCCCCCeeEEEEeeCC
Q 020674 55 GGGNSGMRFHVALTATD 71 (323)
Q Consensus 55 ~~~~~~~~~H~vfSt~c 71 (323)
........+|+.+|+++
T Consensus 62 ~~~~~~epLHv~I~a~~ 78 (122)
T d1k1ga_ 62 MLPGEDEPLHALVTANT 78 (122)
T ss_dssp CSCCSSCCEEEEEEESS
T ss_pred CCCCCCCCceEEEecCC
Confidence 34445678999999987
No 5
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.74 E-value=51 Score=24.22 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=13.4
Q ss_pred CCccEEEEecCCeee
Q 020674 150 IEEEYILMAEPDHIF 164 (323)
Q Consensus 150 i~e~~IlmlDpD~I~ 164 (323)
.+.|||+.+|+|-++
T Consensus 80 a~ge~i~~lD~D~~~ 94 (265)
T d1omza_ 80 VETNAVLMVDDDTLI 94 (265)
T ss_dssp CCSSEEEEECTTEEE
T ss_pred CCcCEEEEeCcccCC
Confidence 477999999999887
No 6
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.15 E-value=44 Score=24.49 Aligned_cols=20 Identities=10% Similarity=0.414 Sum_probs=17.1
Q ss_pred eEEeHhHHHhhhHHHHHhHh
Q 020674 216 VIIKKYLLEEISPTWLNVSL 235 (323)
Q Consensus 216 ~im~~~DL~riAP~W~~~t~ 235 (323)
-+|..+||.-|..+|.++-.
T Consensus 29 ~~iseedMvtvV~DWvn~Yi 48 (90)
T d1z8ua1 29 ALVSEEDMVTVVEDWMNFYI 48 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 36999999999999999643
No 7
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.85 E-value=59 Score=28.37 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=18.6
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 020674 151 EEEYILMAEPDHIFVKPLPNL 171 (323)
Q Consensus 151 ~e~~IlmlDpD~I~~rPl~~~ 171 (323)
+.||++-+|+||+|..++...
T Consensus 141 e~DyLf~~DaDm~f~~~vg~E 161 (283)
T d1lzia_ 141 EVDYLVCVDVDMEFRDHVGVE 161 (283)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCEEEEeecceEEecccccE
Confidence 459999999999999999764
No 8
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}
Probab=9.80 E-value=67 Score=26.23 Aligned_cols=15 Identities=20% Similarity=0.833 Sum_probs=13.5
Q ss_pred ccCchhHHHHHHHhc
Q 020674 134 VLNRPWAFVQWLEKA 148 (323)
Q Consensus 134 v~NKP~A~~qWL~~a 148 (323)
.+.||+-|.+|++..
T Consensus 3 ~~~~P~n~~~Wieen 17 (174)
T d1yfua1 3 TYGAPFNFPRWIDEH 17 (174)
T ss_dssp TTCSCCCHHHHHHHT
T ss_pred cccCCccHHHHHHhh
Confidence 578999999999986
No 9
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.74 E-value=58 Score=28.47 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.5
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 020674 151 EEEYILMAEPDHIFVKPLPNL 171 (323)
Q Consensus 151 ~e~~IlmlDpD~I~~rPl~~~ 171 (323)
+.||++-+|+||+|..++...
T Consensus 136 e~Dylf~~DaDm~f~~~vg~E 156 (287)
T d1o7qa_ 136 EVDFLFCMDVDQVFQDKFGVE 156 (287)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCeEEEEeCCceEecccccc
Confidence 459999999999999999764
No 10
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=9.38 E-value=21 Score=27.88 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.8
Q ss_pred CCcCcccCchhHHH
Q 020674 129 DRGYIVLNRPWAFV 142 (323)
Q Consensus 129 dd~Y~v~NKP~A~~ 142 (323)
++.|.++|||.|+.
T Consensus 2 ~~~Yi~lNKP~G~~ 15 (174)
T d1vioa1 2 EGQYFMLNKPQGCV 15 (174)
T ss_dssp CCCEEEEEECTTCB
T ss_pred CCEEEEEECCCCEE
Confidence 46899999999973
Done!