BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020675
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40119|CBBYC_CUPNH Protein CbbY, chromosomal OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=cbbYC PE=3 SV=3
Length = 254
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 24/120 (20%)
Query: 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF- 144
A++ +VDG L D + QAFN AF ++GLD W AP+YT LL K AG ++R++ +
Sbjct: 3 ALIFDVDGTLADT-ESAHLQAFNAAFAEVGLDW-YWDAPLYTRLL-KVAGGKERLMHYWR 59
Query: 145 ---------FNRKNALD-----------EFLASKDAPLRPGVEDFVDDAYNEGIPLIVLT 184
K +D E + + PLRPG+ +D+A G+PL + T
Sbjct: 60 MVDPEEARGCKVKETIDAVHAIKTRHYAERVGAGGLPLRPGIARLIDEAGEAGLPLAIAT 119
>sp|Q04541|CBBYP_CUPNH Protein CbbY, plasmid OS=Cupriavidus necator (strain ATCC 17699 /
H16 / DSM 428 / Stanier 337) GN=cbbYP PE=3 SV=1
Length = 254
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 24/120 (20%)
Query: 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF- 144
A++ +VDG L D + QAFN AF ++GLD +W AP+YT LL K AG ++R++ +
Sbjct: 3 ALIFDVDGTLADT-ETAHLQAFNAAFAEVGLDW-HWDAPLYTRLL-KVAGGKERLMHYWR 59
Query: 145 ---------FNRKNALD-----------EFLASKDAPLRPGVEDFVDDAYNEGIPLIVLT 184
K +D E + + PLRPG+ + +A G+PL + T
Sbjct: 60 MVDPEEARGCKVKETIDAVHAIKTRHYAERVGAGGLPLRPGIARLIAEAGEAGLPLAIAT 119
>sp|O33513|CBBY_RHOCA Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1
Length = 227
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDED------- 138
A++ +VDG L + +RQAFN F GLD W+ Y LLR + G E
Sbjct: 5 ALIFDVDGTLAETEEV-HRQAFNETFAAQGLDW-YWSKEDYRTLLRTTGGKERMAKHREN 62
Query: 139 --------RMLVLFFNRKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLT 184
++ L + E +AS L PGV + +D A G+ L + T
Sbjct: 63 LGSGPSDAKIADLHKAKTQRYVEIIASGQVGLLPGVAELIDRAKASGLRLAIAT 116
>sp|P95649|CBBY_RHOSH Protein CbbY OS=Rhodobacter sphaeroides GN=cbbY PE=3 SV=1
Length = 230
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 19/115 (16%)
Query: 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFF 145
A+L +VDG L + +R+AFN F LG+D W Y +LL + G E R+
Sbjct: 4 AILFDVDGTLAETEEL-HRRAFNETFAALGVDW-FWDREEYRELLTTTGGKE-RIARFLR 60
Query: 146 NRKN------------ALDE----FLASKDAPLRPGVEDFVDDAYNEGIPLIVLT 184
++K A E +A + LRPG+ D + +A GI L V T
Sbjct: 61 HQKGDPAPLPIADIHRAKTERFVALMAEGEIALRPGIADLIAEAKRAGIRLAVAT 115
>sp|B3PQ08|MOAA_RHIE6 Cyclic pyranopterin monophosphate synthase OS=Rhizobium etli
(strain CIAT 652) GN=moaA PE=3 SV=1
Length = 348
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 191 DRIARSVVEKLGSERISKIKIVGNEEVERS--LYGQFVLGKGISSGVDEQLATEARKAVS 248
DR+ + + K + KI++ G E + R +Y LGK I +G+DE T +S
Sbjct: 67 DRLCSAFIAK----GVRKIRLTGGEPLVRKNIMYLVRQLGKKIGAGLDELTLTTNGSQLS 122
Query: 249 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIV 280
+E+ E + +++V +DT PE KI
Sbjct: 123 RHAEELYE--CGVRRINVSLDTLDPEKFRKIT 152
>sp|Q9R007|CLC5A_MOUSE C-type lectin domain family 5 member A OS=Mus musculus GN=Clec5a
PE=1 SV=2
Length = 190
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 31/111 (27%)
Query: 36 RNHNCLSPFPSFSSTFPRNYNFH-GKCLHVNPFSAFSSSSGHDSQ-------------NP 81
RN P S+ + PRN++FH GKC F +FS S DS N
Sbjct: 58 RNDESTMPTRSYGTVCPRNWDFHQGKCF----FFSFSESPWKDSMDYCATQGSTLAIVNT 113
Query: 82 PRDLAVLLEVDGV------LV-----DAYRFGNRQAF--NVAFQKLGLDCA 119
P L L ++ G+ LV +R+ N F NV Q DC
Sbjct: 114 PEKLKYLQDIAGIENYFIGLVRQPGEKKWRWINNSVFNGNVTNQDQNFDCV 164
>sp|Q2K7L4|MOAA_RHIEC Cyclic pyranopterin monophosphate synthase OS=Rhizobium etli
(strain CFN 42 / ATCC 51251) GN=moaA PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 191 DRIARSVVEKLGSERISKIKIVGNEEVERS--LYGQFVLGKGISSGVDEQLATEARKAVS 248
DR+ + + K +SKI++ G E + R +Y LG I SG+DE T +S
Sbjct: 67 DRLCSAFIAK----GVSKIRLTGGEPLVRKNIMYLVRKLGAKIGSGLDELTLTTNGSQLS 122
Query: 249 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIV 280
E+ + + +++V +DT P+ KI
Sbjct: 123 RHAAELHD--CGVRRINVSLDTLDPDKFRKIT 152
>sp|Q47758|DDL_ENTFA D-alanine--D-alanine ligase OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=ddl PE=3 SV=2
Length = 348
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 194 ARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL--------GKGISSGVDEQLATEARK 245
AR++VE+ R ++ I+GNE+V +L G+ V K I++ ++ Q+ +
Sbjct: 210 ARAIVEQGIEAREIEVAILGNEDVRTTLPGEVVKDVAFYDYDAKYINNTIEMQIPAHVPE 269
Query: 246 AVSAQKQEIAEEVASML 262
V+ Q QE A++ ML
Sbjct: 270 EVAHQAQEYAKKAYIML 286
>sp|B5ZRM8|MOAA_RHILW Cyclic pyranopterin monophosphate synthase OS=Rhizobium
leguminosarum bv. trifolii (strain WSM2304) GN=moaA PE=3
SV=1
Length = 348
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 191 DRIARSVVEKLGSERISKIKIVGNEEVERS--LYGQFVLGKGISSGVDEQLATEARKAVS 248
DR+ + V K + KI++ G E + R +Y LG+ I +G+DE T +S
Sbjct: 67 DRLCSAFVAK----GVKKIRLTGGEPLVRKNIMYLVRRLGEKIGAGLDEVTLTTNGSQLS 122
Query: 249 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIV-----AALRAGAEYAEK 292
+E+ + + +++V +DT P+ KI A + G + A+K
Sbjct: 123 RHAEELYD--CGVRRINVSLDTLDPDKFRKITRWGDFAKVMEGIDAAQK 169
>sp|Q5RCJ3|CUL7_PONAB Cullin-7 OS=Pongo abelii GN=CUL7 PE=2 SV=1
Length = 1729
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 11/166 (6%)
Query: 1 MKTSSTSCSLLNSLRFSTAITVS-KKSYYHYQATQLRNHNCLSPFPSFSSTFPRNYNFHG 59
M ++S L N RF I + K+ T++R L P P+F F H
Sbjct: 957 MPSASRVILLENLTRFWPIIQIRIKRCQQGGIDTRIRGLETLGPKPTFWPVFREQLCRHT 1016
Query: 60 KCLHVNPFSAFSSSSGHDSQNPPRDLAVLLEVDGVLVDAYRFGNR-QAFNVAFQKLGLDC 118
+ ++ A+S D ++ L + ++G L F +R N A Q LG C
Sbjct: 1017 RLFYMVRAQAWSQDMAEDRRS---LLHLSSRLNGALRQEQNFADRFLPDNEAAQALGKTC 1073
Query: 119 ANWTAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLASKDAPLRP 164
W A + + ++ DED + L + LD++L ++A P
Sbjct: 1074 --WEALVSPVVQNITSPDEDGISPLGW----LLDQYLECQEAVFNP 1113
>sp|Q8G6V2|ILVC1_BIFLO Ketol-acid reductoisomerase 1 OS=Bifidobacterium longum (strain NCC
2705) GN=ilvC1 PE=3 SV=2
Length = 350
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVV--EKLGSERISKIKIVGNEEV 217
AP PG + A G+P++V GD A ++ + LG+ R IK EE
Sbjct: 130 APKGPGHIVRREYAAGRGVPVVVAVEQDPRGDGWALTLAYAKALGALRAGAIKTTFKEET 189
Query: 218 ERSLYG-QFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDI 268
E L+G Q VL G++ V ++ E Q + EV LK+ VD+
Sbjct: 190 ETDLFGEQNVLMGGVNKLV--EMGFEVLTDAGYQPEIAYFEVCHELKMLVDL 239
>sp|Q0C9E8|MRH4_ASPTN ATP-dependent RNA helicase mrh4, mitochondrial OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=mrh4 PE=3 SV=2
Length = 631
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 124 PIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLASK-------DAP--------LRPGVED 168
PI T+++ K++G ++++ +LD FL K P ++ GV D
Sbjct: 367 PITTEIIEKTSGSLQKLILCSATIPRSLDNFLRKKYPDIQRLTTPNLHAIPRRVQLGVVD 426
Query: 169 FVDDAYNEGIPLI---VLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQF 225
D Y L V+ + GK+GD + KI + NE E QF
Sbjct: 427 IQKDPYRGNRNLACADVIWSIGKAGDSEPAGPFASYQGPSVKKILVFVNEREEADEVAQF 486
Query: 226 VLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRA 285
+ KGI + + +R + + +++EI E + +P S ++I+ A +
Sbjct: 487 LRSKGIDAH------SLSRDSSARRQEEILAEFT---------EAGAPPSSEEIMLAQKK 531
Query: 286 GAE 288
G +
Sbjct: 532 GRQ 534
>sp|A4SE63|PTH_PROVI Peptidyl-tRNA hydrolase OS=Prosthecochloris vibrioformis (strain
DSM 265) GN=pth PE=3 SV=1
Length = 190
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 195 RSVVEKLGSERISKIKI-VGNEEVERSLYGQFVLGK 229
+ ++E LGSE ++++I +G EE + Y FVLGK
Sbjct: 115 KHIIESLGSEEFARLRIGIGLEEKPQGGYSSFVLGK 150
>sp|Q47827|DDL_ENTHA D-alanine--D-alanine ligase OS=Enterococcus hirae (strain ATCC 9790
/ DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB
6459 / NCDO 1258) GN=ddl PE=3 SV=2
Length = 358
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 194 ARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL--------GKGISSGVDEQLATEARK 245
+R++VE+ R ++ ++GNE+V +L G+ V K I++ ++ Q+ E +
Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVVKDVAFYDYDAKYINNKIEMQIPAEVPE 269
Query: 246 AVSAQKQEIAEEVASML 262
V + QE A+ +ML
Sbjct: 270 EVYQKAQEYAKIAYTML 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,230,131
Number of Sequences: 539616
Number of extensions: 4813466
Number of successful extensions: 14237
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 14225
Number of HSP's gapped (non-prelim): 54
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)