Query 020676
Match_columns 323
No_of_seqs 203 out of 1144
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12479 branched-chain amino 100.0 8.4E-50 1.8E-54 378.6 27.0 249 5-314 4-260 (299)
2 PRK08320 branched-chain amino 100.0 2.6E-49 5.6E-54 373.0 26.4 248 6-314 4-259 (288)
3 PRK07544 branched-chain amino 100.0 1.3E-48 2.8E-53 369.2 26.8 250 3-315 7-266 (292)
4 PRK06606 branched-chain amino 100.0 1.6E-48 3.5E-53 370.8 27.4 250 3-314 5-268 (306)
5 PRK13356 aminotransferase; Pro 100.0 3.6E-48 7.8E-53 365.1 28.7 246 4-314 6-261 (286)
6 PRK06680 D-amino acid aminotra 100.0 3E-48 6.4E-53 365.8 27.2 247 5-314 3-257 (286)
7 cd01558 D-AAT_like D-Alanine a 100.0 2.3E-48 5E-53 362.9 25.9 246 8-314 1-250 (270)
8 TIGR01122 ilvE_I branched-chai 100.0 2.9E-48 6.2E-53 367.7 26.8 248 8-314 1-260 (298)
9 PRK12400 D-amino acid aminotra 100.0 4.6E-48 1E-52 365.1 27.7 249 1-314 1-258 (290)
10 PRK07849 4-amino-4-deoxychoris 100.0 9E-48 2E-52 363.7 27.1 244 4-314 6-267 (292)
11 PRK07650 4-amino-4-deoxychoris 100.0 7.2E-48 1.6E-52 362.5 26.2 244 6-314 1-252 (283)
12 TIGR01121 D_amino_aminoT D-ami 100.0 3.4E-47 7.3E-52 356.8 26.5 244 7-314 2-251 (276)
13 PLN02845 Branched-chain-amino- 100.0 9E-47 2E-51 363.2 26.9 243 6-314 42-298 (336)
14 PRK06092 4-amino-4-deoxychoris 100.0 9.6E-47 2.1E-51 352.0 26.2 240 6-314 1-248 (268)
15 TIGR03461 pabC_Proteo aminodeo 100.0 1.3E-46 2.8E-51 349.7 26.1 239 8-314 1-246 (261)
16 PRK09266 hypothetical protein; 100.0 1.1E-45 2.3E-50 344.9 25.1 237 4-314 2-240 (266)
17 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 4.6E-45 1E-49 337.3 25.6 226 28-314 6-236 (256)
18 PRK13357 branched-chain amino 100.0 2.1E-44 4.5E-49 349.4 25.8 251 8-314 42-313 (356)
19 cd01557 BCAT_beta_family BCAT_ 100.0 4.3E-44 9.4E-49 336.4 25.5 238 22-315 2-252 (279)
20 cd01559 ADCL_like ADCL_like: 4 100.0 5.6E-44 1.2E-48 330.0 25.1 223 27-314 5-232 (249)
21 PLN03117 Branched-chain-amino- 100.0 7E-44 1.5E-48 345.4 26.4 251 6-314 44-309 (355)
22 TIGR01123 ilvE_II branched-cha 100.0 5.1E-44 1.1E-48 341.0 23.8 250 8-313 1-270 (313)
23 PLN02782 Branched-chain amino 100.0 1.8E-43 4E-48 346.7 25.7 250 7-313 95-359 (403)
24 PLN02259 branched-chain-amino- 100.0 2E-42 4.3E-47 338.0 24.3 246 7-314 81-346 (388)
25 COG0115 IlvE Branched-chain am 100.0 1.9E-41 4.2E-46 319.2 27.9 247 5-314 2-259 (284)
26 PLN02883 Branched-chain amino 100.0 3.8E-41 8.2E-46 328.4 25.9 251 7-314 77-342 (384)
27 PRK07546 hypothetical protein; 100.0 1.3E-37 2.7E-42 281.0 23.4 198 30-312 4-208 (209)
28 PF01063 Aminotran_4: Aminotra 100.0 4.2E-36 9.1E-41 272.8 16.9 211 46-315 1-215 (231)
29 KOG0975 Branched chain aminotr 100.0 4.8E-33 1E-37 263.7 18.6 250 8-312 70-334 (379)
30 PRK07101 hypothetical protein; 100.0 3.9E-30 8.4E-35 228.7 18.8 182 30-307 3-187 (187)
31 TIGR00829 FRU PTS system, fruc 40.1 48 0.001 25.5 4.0 55 260-318 8-72 (85)
32 PRK10474 putative PTS system f 33.8 58 0.0013 25.2 3.6 36 269-304 4-48 (88)
33 cd05569 PTS_IIB_fructose PTS_I 32.3 91 0.002 24.4 4.5 46 260-305 9-64 (96)
34 COG2257 Uncharacterized homolo 27.8 44 0.00096 26.4 1.9 32 264-295 30-61 (92)
35 PTZ00106 60S ribosomal protein 26.7 1.9E+02 0.0042 23.3 5.6 54 264-322 52-106 (108)
36 PRK13602 putative ribosomal pr 24.1 1.2E+02 0.0026 23.1 3.8 29 266-295 40-68 (82)
37 PRK06683 hypothetical protein; 23.0 1.3E+02 0.0029 22.9 3.8 31 264-295 38-68 (82)
38 COG1445 FrwB Phosphotransferas 23.0 1.7E+02 0.0037 24.4 4.6 34 270-303 23-65 (122)
39 PF11547 E3_UbLigase_EDD: E3 u 21.6 42 0.00091 23.4 0.6 23 260-282 17-39 (53)
40 PRK10427 putative PTS system f 21.0 1.5E+02 0.0033 24.2 4.0 45 260-304 13-67 (114)
41 PF13051 DUF3912: Protein of u 20.1 93 0.002 22.5 2.2 38 223-279 31-68 (68)
No 1
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=8.4e-50 Score=378.59 Aligned_cols=249 Identities=21% Similarity=0.257 Sum_probs=207.0
Q ss_pred cEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020676 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (323)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~ 81 (323)
+++|+||+++ +.+++.++++||+ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 4 ~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~i~~p-------------- 66 (299)
T PRK12479 4 QYIYMNGEFV-EKEKAVVSVYDHGFLYGDGVFEGIRSYGG--NVFCLKEHVKRLYESAKSILLTIP-------------- 66 (299)
T ss_pred cEEEECCEEe-EHHHCccccccchhheeeeEEEEEEEECC--EecCHHHHHHHHHHHHHHhCCCCC--------------
Confidence 5699999999 9999999999986 9999999999999 999999999999999999999643
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCC
Q 020676 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (323)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (323)
++.+++++.+.++++ .++..+++||++++++.+.+++. +.....+++++.+.|++
T Consensus 67 -------~~~~~l~~~i~~~i~-------------~~~~~~~~ir~~v~rg~g~~g~~-----~~~~~~~~~~i~~~~~~ 121 (299)
T PRK12479 67 -------LTVDEMEEAVLQTLQ-------------KNEYADAYIRLIVSRGKGDLGLD-----PRSCVKPSVIIIAEQLK 121 (299)
T ss_pred -------CCHHHHHHHHHHHHH-------------HcCCCCeEEEEEEEecCCCCCCC-----CccCCCceEEEEEEEcc
Confidence 578899999998887 35556789999999988765443 12334567788878776
Q ss_pred CccccccCCCceEEEeccccccccccccccccc---chHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCc
Q 020676 162 PFVFGVEGTGARLALVGRGRDVAEAKYSDWVRL---RKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSE 236 (323)
Q Consensus 162 ~~~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~---~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~ 236 (323)
+.....+.+|+++.++...|..+.......|+. .++++ +|+++|+||+|+.|++|+|+|++++|+|++++++
T Consensus 122 ~~~~~~~~~gv~~~~~~~~r~~~~~~~~~~K~~nyl~~vla~~ea~~~g~de~l~ld~~g~v~E~s~sNlf~v~~~~--- 198 (299)
T PRK12479 122 LFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEALMLNQQGYVCEGSGDNVFVVKDGK--- 198 (299)
T ss_pred cCChhHHhCCeEEEEEeEeccCCCccCccchhhhhHHHHHHHHHHHHcCCCEEEEEcCCCcEEECCceEEEEEECCE---
Confidence 443334467888888887776543222233333 24444 6888999999777655599999999999999988
Q ss_pred hhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+|||+++|+||||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+.+
T Consensus 199 ----------------l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~PV~~id 260 (299)
T PRK12479 199 ----------------VLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKVD 260 (299)
T ss_pred ----------------EEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999854
No 2
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=2.6e-49 Score=372.98 Aligned_cols=248 Identities=21% Similarity=0.261 Sum_probs=204.6
Q ss_pred EEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCC
Q 020676 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~ 82 (323)
++|+||+++ +..++.++++|++ |||+|||+++++| ++++|++|++||.+||+.|+|+.|
T Consensus 4 ~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~~v~~g--~~~~l~~Hl~RL~~Sa~~l~i~~p--------------- 65 (288)
T PRK08320 4 LIYLNGEFV-PKEEAKVSVFDHGFLYGDGVFEGIRAYNG--RVFRLKEHIDRLYDSAKAIMLEIP--------------- 65 (288)
T ss_pred EEEECCEEE-EHHHCcccccchhhhhcceEEEEEEEECC--EeecHHHHHHHHHHHHHhhCCCCC---------------
Confidence 699999999 9999999999986 9999999999999 899999999999999999999543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCC
Q 020676 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVP 162 (323)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 162 (323)
++.+.+++.+.++++ +++..+++||++|+++.+.+++. +..+..+.+++.+.|+++
T Consensus 66 ------~~~~~l~~~i~~~i~-------------~~~~~~~~iri~v~rg~g~~g~~-----~~~~~~~~~~~~~~~~~~ 121 (288)
T PRK08320 66 ------LSKEEMTEIVLETLR-------------KNNLRDAYIRLVVSRGVGDLGLD-----PRKCPKPTVVCIAEPIGL 121 (288)
T ss_pred ------CCHHHHHHHHHHHHH-------------hcCCCCEEEEEEEEECCCcCCCC-----cccCCCceEEEEEEEcCc
Confidence 578889999988887 45566899999999987765432 123344566777777654
Q ss_pred ccccccCCCceEEEeccccccccccccccccc---chHH--HhhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCch
Q 020676 163 FVFGVEGTGARLALVGRGRDVAEAKYSDWVRL---RKPL--EKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEA 237 (323)
Q Consensus 163 ~~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~---~~~l--~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~ 237 (323)
.....+.+|+++.++...|..+.......|+. .+++ .+|+++|+||+|+.|++|+|+||+++|||++++++
T Consensus 122 ~~~~~~~~g~~~~~~~~~r~~~~~~~~~~K~~nyl~~v~a~~~A~~~g~de~L~ld~~g~v~E~s~sNlf~~~~~~---- 197 (288)
T PRK08320 122 YPGELYEKGLKVITVSTRRNRPDALSPQVKSLNYLNNILAKIEANLAGVDEAIMLNDEGYVAEGTGDNIFIVKNGK---- 197 (288)
T ss_pred CChhHHhcCeEEEEEeeeccCCCCcCccchhhhhHHHHHHHHHHHHcCCCEEEEECCCCeEEEcCcEEEEEEECCE----
Confidence 43334467888888777776432221223333 2344 36888999999877755599999999999999988
Q ss_pred hhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 238 EDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 238 ~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+|||+++|+|+||||+.|+++|+++|++|+|+.++++||..|||+|+|||++||+||.+.+
T Consensus 198 ---------------l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~e~~l~~~dL~~ade~f~~ns~~gv~pV~~i~ 259 (288)
T PRK08320 198 ---------------LITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEVFLTGTAAEVIPVVKVD 259 (288)
T ss_pred ---------------EECCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEECCHHHHHhCCEEEEecChhhEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999864
No 3
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=1.3e-48 Score=369.17 Aligned_cols=250 Identities=15% Similarity=0.146 Sum_probs=201.6
Q ss_pred CccEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCC
Q 020676 3 STRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGL 79 (323)
Q Consensus 3 ~~~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~ 79 (323)
...++|+||+++ +.+++.++++|++ |||+|||+|+++| ++++|++|++||.+||+.|+|+.|
T Consensus 7 ~~~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~i~~~------------ 71 (292)
T PRK07544 7 RDGFIWMDGELV-PWRDAKVHVLTHGLHYASSVFEGERAYGG--KIFKLREHSERLRRSAELLDFEIP------------ 71 (292)
T ss_pred cCCeEEECCEEE-EhHHCccChhhhHhhhcceeEEeeEeeCC--cccChHHHHHHHHHHHHHhCCCCC------------
Confidence 345799999999 9999999999976 9999999999999 899999999999999999999543
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEec
Q 020676 80 EPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSG 159 (323)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (323)
++.+.|++.+.++++ .++..+++||++++++.+.+++. +....+.+++...+
T Consensus 72 ---------~~~~~l~~~i~~~i~-------------~~~~~~~~ir~~v~rg~~~~g~~------~~~~~~~~~v~~~~ 123 (292)
T PRK07544 72 ---------YSVAEIDAAKKETLA-------------ANGLTDAYVRPVAWRGSEMMGVS------AQQNKIHLAIAAWE 123 (292)
T ss_pred ---------CCHHHHHHHHHHHHH-------------hcCCCCeEEEEEEEecCCCCCcC------CCCCCcEEEEEEec
Confidence 578899999999987 45567899999999998765432 12223445555555
Q ss_pred CCCccc-cccCCCceEEEecccccccccccccccc----cchHH--HhhCCCCCCeEEEecCCCeEEecCcceEEEEEcC
Q 020676 160 YVPFVF-GVEGTGARLALVGRGRDVAEAKYSDWVR----LRKPL--EKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRK 232 (323)
Q Consensus 160 ~~~~~~-~~~~~g~~l~~~~~~r~~~~~k~~~~~~----~~~~l--~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~ 232 (323)
+++... ....+|+++.++..+|..|.......|. ..+++ .+|+++|+||+||.|.+|+|+||+++|+|+|+++
T Consensus 124 ~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~k~~~~yl~~vla~~~A~~~G~deal~ld~~g~V~E~~~sNlf~v~~~ 203 (292)
T PRK07544 124 WPSYFDPEAKMKGIRLDIAKWRRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDYRGYVAEATGANIFFVKDG 203 (292)
T ss_pred cccccCccccCCCEEEEEeEEEcCCCCCcCHhhhhhcccHHHHHHHHHHHHcCCCeEEEECCCCCEEEcCceEEEEEECC
Confidence 432211 2234689998888877655432222221 12444 3688999999987765559999999999999998
Q ss_pred CCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEE
Q 020676 233 DNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIA 312 (323)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~ 312 (323)
+ |+||+++ ++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|||++||+||.+
T Consensus 204 ~-------------------l~TP~~~-~~L~GItR~~vl~~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~~ 263 (292)
T PRK07544 204 V-------------------IHTPTPD-CFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSE 263 (292)
T ss_pred E-------------------EECCCCc-ccccchhHHHHHHHHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEEE
Confidence 8 9999986 5999999999999999999999999999999999999999999999999998
Q ss_pred ech
Q 020676 313 QKR 315 (323)
Q Consensus 313 ~~~ 315 (323)
.+.
T Consensus 264 i~~ 266 (292)
T PRK07544 264 IGE 266 (292)
T ss_pred Eee
Confidence 643
No 4
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=1.6e-48 Score=370.81 Aligned_cols=250 Identities=19% Similarity=0.204 Sum_probs=206.6
Q ss_pred CccEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCcc----ccCHHHHHHHHHHHHHHhcCcCCCCCCCCCC
Q 020676 3 STRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSC----LLFWERHLRRLASSARILYNSSPNLLFKSPT 75 (323)
Q Consensus 3 ~~~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~----~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~ 75 (323)
+.+++|+||+++ +.+++.+++.|++ |||+|||+|+++| + +++|++|++||.+||+.|+|+.|
T Consensus 5 ~~~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEtir~~~g--~~~~~~~~l~~Hl~RL~~Sa~~l~i~~~-------- 73 (306)
T PRK06606 5 RAGYIWFNGELV-PWEDAKVHVLTHALHYGTGVFEGIRAYDT--PKGPAIFRLREHTKRLFNSAKILRMEIP-------- 73 (306)
T ss_pred cCCcEEECCEEE-EhHHcccChhhhhhhhcceeEEEEEEecC--CCCCeeeChHHHHHHHHHHHHHhCCCCC--------
Confidence 366899999999 9999999999976 9999999999998 6 99999999999999999999543
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEE
Q 020676 76 PSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSV 155 (323)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v 155 (323)
++.+.|++.|.++++ +++..+++||++|+++.+++++ .+....+.+++
T Consensus 74 -------------~~~~~l~~~i~~~i~-------------~~~~~~~~ir~~v~rg~~~~g~------~~~~~~~~~~i 121 (306)
T PRK06606 74 -------------YSVDELMEAQREVVR-------------KNNLKSAYIRPLVFVGDEGLGV------RPHGLPTDVAI 121 (306)
T ss_pred -------------CCHHHHHHHHHHHHH-------------hcCCCCEEEEEEEEecCCccCc------CCCCCCceEEE
Confidence 478899999999887 4555689999999999876543 22223456677
Q ss_pred EEecCCCcc-ccccCCCceEEEeccccccccccccccccc----chHHH--hhCCCCCCeEEEecCCCeEEecCcceEEE
Q 020676 156 HFSGYVPFV-FGVEGTGARLALVGRGRDVAEAKYSDWVRL----RKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFV 228 (323)
Q Consensus 156 ~~~~~~~~~-~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~----~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~ 228 (323)
.+.|+++.. ...+.+|+++.++...|..+.......|+. .++++ +|+++|+||+||.+++|+|+||+++|||+
T Consensus 122 ~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~G~de~l~l~~~g~v~E~~~sNlf~ 201 (306)
T PRK06606 122 AAWPWGAYLGEEALEKGIRVKVSSWTRHAPNSIPTRAKASGNYLNSILAKTEARRNGYDEALLLDVEGYVSEGSGENIFI 201 (306)
T ss_pred EEeccccccCcccccCCeEEEEeeEecCCCCCcCcchhhhhccHHHHHHHHHHHHcCCCEEEEECCCCCEEEcCceEEEE
Confidence 777765422 122356899988887776554333334421 24444 68899999998776555999999999999
Q ss_pred EEcCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceE
Q 020676 229 VCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSF 308 (323)
Q Consensus 229 v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~ 308 (323)
+++++ |+|||++.|+|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+
T Consensus 202 v~~~~-------------------l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~ 262 (306)
T PRK06606 202 VRDGV-------------------LYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFFTGTAAEVT 262 (306)
T ss_pred EECCE-------------------EECCCCcCCcCCCHHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEE
Confidence 99988 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 020676 309 DLIAQK 314 (323)
Q Consensus 309 pV~~~~ 314 (323)
||.+.+
T Consensus 263 PV~~id 268 (306)
T PRK06606 263 PIREVD 268 (306)
T ss_pred EEEEEC
Confidence 999864
No 5
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=3.6e-48 Score=365.12 Aligned_cols=246 Identities=18% Similarity=0.142 Sum_probs=198.6
Q ss_pred ccEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCC
Q 020676 4 TRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (323)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~ 80 (323)
..++|+||+++ +.+.+.+++.|++ |||+|||+|+++| ++++|++|++||.+||+.|+|+.|
T Consensus 6 ~~~~~~nG~~~-~~~~~~i~~~drg~~yGdgvFEtir~~~g--~~~~l~~Hl~RL~~Sa~~L~i~~~------------- 69 (286)
T PRK13356 6 NTWTFFDGEWH-EGNVPIMGPADHAAWLGSTVFDGARAFEG--VTPDLDLHCARVNRSAEALGLKPT------------- 69 (286)
T ss_pred CceEEECCEEc-chhhcccccccchhhhcceeEEEEEEecC--CCCCHHHHHHHHHHHHHHhCCCCC-------------
Confidence 46899999999 9999999999976 9999999999998 899999999999999999999543
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCC-CceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEec
Q 020676 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDG-EELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSG 159 (323)
Q Consensus 81 ~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~-~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (323)
++.+.|++.+.++++. ++. .+++||++|+++.+.+++. .+....+.+.+.+.+
T Consensus 70 --------~~~~~l~~~i~~~i~~-------------~~~~~~~~ir~~v~rg~g~~~~~-----~~~~~~~~~~~~~~~ 123 (286)
T PRK13356 70 --------VSAEEIEALAREGLKR-------------FDPDTALYIRPMYWAEDGFASGV-----APDPESTRFALCLEE 123 (286)
T ss_pred --------CCHHHHHHHHHHHHHH-------------cCCCCcEEEEEEEEeccCcccCc-----CCCcCCceEEEEEEc
Confidence 4788999999988873 333 4689999999987643221 111122333334444
Q ss_pred CCCccccccCCCceEEEeccccccccccccccccc----chHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCC
Q 020676 160 YVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRL----RKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKD 233 (323)
Q Consensus 160 ~~~~~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~----~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~ 233 (323)
.+... .+|+++.++..+|..+......+|.. .++++ +|+++|+||+||.+.+|+|+||+++|||+|++++
T Consensus 124 ~~~~~----~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~g~deal~ld~~G~v~E~~~sNlf~v~~~~ 199 (286)
T PRK13356 124 APMPE----PTGFSLTLSPFRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLGNVAETATSNVFMVKDGV 199 (286)
T ss_pred cCCCC----CCcEEEEEeeeecCCCCCCCccceeccchHHHHHHHHHHHHcCCCEEEEECCCCCEEEcCceEEEEEECCE
Confidence 33221 25899988888886654433444422 23444 6889999999776654499999999999999998
Q ss_pred CCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEe
Q 020676 234 NSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQ 313 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~ 313 (323)
|+||++++++|+||||+.||++|+++|++|+|++++++||.+|||+|+|||++||+||++.
T Consensus 200 -------------------l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~i 260 (286)
T PRK13356 200 -------------------VFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRF 260 (286)
T ss_pred -------------------EEcCCCCCCcccCHHHHHHHHHHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999985
Q ss_pred c
Q 020676 314 K 314 (323)
Q Consensus 314 ~ 314 (323)
+
T Consensus 261 d 261 (286)
T PRK13356 261 D 261 (286)
T ss_pred C
Confidence 4
No 6
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=3e-48 Score=365.79 Aligned_cols=247 Identities=20% Similarity=0.221 Sum_probs=202.9
Q ss_pred cEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020676 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (323)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~ 81 (323)
+++|+||+++ +.+++.+++.|++ |||+|||+|+++| ++++|++|++||.+||+.|+|+.|
T Consensus 3 ~~~~~nG~~~-~~~~~~i~~~drg~~yGdGvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~L~i~~~-------------- 65 (286)
T PRK06680 3 RIAYVNGRYV-NHREARVHIEDRGFQFADGIYEVCAVRDG--KLVDLDRHLARLFRSLGEIRIAPP-------------- 65 (286)
T ss_pred cEEEECCEEE-EHHHCcccccccccceeeEEEEEEEEECC--EEechHHHHHHHHHHHHHcCCCCC--------------
Confidence 4899999999 9999999999976 9999999999998 999999999999999999999543
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCC
Q 020676 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (323)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (323)
++.+.|.+.|.++++ +++..+++||+++++|.+++++. .++.+..+.+++.+.|++
T Consensus 66 -------~~~~~l~~~i~~~~~-------------~~~~~~~~lr~~vtrG~~~~~~~----~~~~~~~~~~~i~~~~~~ 121 (286)
T PRK06680 66 -------MTRAELVEVLRELIR-------------RNRVREGLVYLQVTRGVARRDHV----FPAADVKPSVVVFAKSVD 121 (286)
T ss_pred -------CCHHHHHHHHHHHHH-------------HcCCCceEEEEEEEeCCCCCCCC----CCCCCCCcEEEEEEEecc
Confidence 578899999999987 45567889999999988655432 122234577788888776
Q ss_pred C-ccccccCCCceEEEeccccc-ccccccccccccchHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEE-EcCCCCc
Q 020676 162 P-FVFGVEGTGARLALVGRGRD-VAEAKYSDWVRLRKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVV-CRKDNSE 236 (323)
Q Consensus 162 ~-~~~~~~~~g~~l~~~~~~r~-~~~~k~~~~~~~~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v-~~~~~~~ 236 (323)
+ ....++.+|+++.++...|. .+..|..++. .++++ +|+++|+||+|+.+ +|+|+||+++|+|++ ++++
T Consensus 122 ~~~~~~~~~~gv~~~~~~~~~~~~~~~Ks~nyl--~~vla~~eA~~~g~dd~l~ld-~g~v~E~~~sN~f~~~~~~~--- 195 (286)
T PRK06680 122 FARPAAAAETGIKVITVPDNRWKRCDIKSVGLL--PNVLAKQAAKEAGAQEAWMVD-DGFVTEGASSNAWIVTKDGK--- 195 (286)
T ss_pred ccCChhHHhCCeEEEEecCCCCCCCCcchhccH--HHHHHHHHHHHCCCCEEEEec-CCEEEEcCcEEEEEEEECCE---
Confidence 4 22233356888777664442 2334444322 24444 78899999997766 559999999999999 8887
Q ss_pred hhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+|||+++++|+||||+.|+++|++.|++|+|+.++++||.+|||+|+|||++||+||.+.+
T Consensus 196 ----------------l~TP~~~~~iL~Gitr~~il~~a~~~g~~v~e~~i~~~el~~ade~f~~ns~~gi~pV~~id 257 (286)
T PRK06680 196 ----------------LVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQID 257 (286)
T ss_pred ----------------EEeCCCCCCCCcCHHHHHHHHHHHHcCCeEEEEcCCHHHHhcCcEEEEecCcccEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999854
No 7
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=2.3e-48 Score=362.88 Aligned_cols=246 Identities=24% Similarity=0.273 Sum_probs=201.0
Q ss_pred EECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCC
Q 020676 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRT 84 (323)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~~ 84 (323)
|+||+++ +.+++.+++.|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~nG~~~-~~~~~~i~~~d~g~~~G~gvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~~----------------- 60 (270)
T cd01558 1 YLNGEYV-PREEAKVSVFDRGFLFGDGVYEVIRVYNG--KPFALDEHLDRLYRSAKELRIDIP----------------- 60 (270)
T ss_pred CcCCeEe-EHHHCccccccchhcccceEEEEEEEECC--EEecHHHHHHHHHHHHHHhCCCCC-----------------
Confidence 6899999 9999999999976 9999999999998 999999999999999999999543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCcc
Q 020676 85 PSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFV 164 (323)
Q Consensus 85 ~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~ 164 (323)
++.+.+++.+.++++ .++..++.+|+.+++|.+++++. .+.+..+.+++.+.|+++..
T Consensus 61 ----~~~~~l~~~i~~~~~-------------~~~~~~~~~~~~~t~g~~~~~~~-----~~~~~~~~~~i~~~~~~~~~ 118 (270)
T cd01558 61 ----YTREELKELIRELVA-------------KNEGGEGDVYIQVTRGVGPRGHD-----FPKCVKPTVVIITQPLPLPP 118 (270)
T ss_pred ----CCHHHHHHHHHHHHH-------------HcCCCCceEEEEEEeCCCccCCC-----CCCCCCCEEEEEEEecCCCC
Confidence 578889999988887 34456778899999887665432 12234466777777775433
Q ss_pred ccccCCCceEEEecccccc-cccccccccccchHHHhhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhhhhh
Q 020676 165 FGVEGTGARLALVGRGRDV-AEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQ 243 (323)
Q Consensus 165 ~~~~~~g~~l~~~~~~r~~-~~~k~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~~~~ 243 (323)
..++.+|+++.++..+|.. +..|..+|........+|+++|+||+||.|++|+|+||+++|||++++++
T Consensus 119 ~~~~~~gv~~~~~~~~~~~~~~~K~~ny~~~~~a~~~a~~~g~de~l~ld~~g~v~E~~~sNif~~~~~~---------- 188 (270)
T cd01558 119 AELLEKGVRVITVPDIRWLRCDIKSLNLLNNVLAKQEAKEAGADEAILLDADGLVTEGSSSNVFIVKNGV---------- 188 (270)
T ss_pred hhhhhcCeEEEEecccccCCCCchhhccHHHHHHHHHHHHcCCCEEEEEcCCCEEEEcCcEEEEEEECCE----------
Confidence 3334578888888776642 34555433222223347889999999776655599999999999999998
Q ss_pred hcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 244 TCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 244 ~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+|||+++|+|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+..
T Consensus 189 ---------l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~gv~PV~~i~ 250 (270)
T cd01558 189 ---------LVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEID 250 (270)
T ss_pred ---------EECCCCcCCCCCChHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecCcccEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999864
No 8
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=2.9e-48 Score=367.68 Aligned_cols=248 Identities=19% Similarity=0.196 Sum_probs=204.7
Q ss_pred EECCeeecCCCCCccCccccC---cCeeEEEEEEEcC--CccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCC
Q 020676 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNN--GSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (323)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g--~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~ 82 (323)
|+||+++ +.+++.++++|++ |||+|||+|+++| +.++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~ng~~v-~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~~~~~l~~Hl~RL~~Sa~~l~i~~~--------------- 64 (298)
T TIGR01122 1 WMDGEFV-DWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYRMEIP--------------- 64 (298)
T ss_pred CcCCEEE-EhhhcccChhhhhhhccceEEEEEEEEcCCCcceeeChHHHHHHHHHHHHHhCCCCC---------------
Confidence 6899999 9999999999976 9999999999986 22599999999999999999999543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCC
Q 020676 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVP 162 (323)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 162 (323)
++.+.|++.|.++++ +++..+++||++|+++.+++++. ++....+++++.+.|+++
T Consensus 65 ------~~~~~l~~~i~~~i~-------------~~~~~~~~ir~~v~rg~~~~g~~-----~~~~~~~~~~v~~~~~~~ 120 (298)
T TIGR01122 65 ------YSKEELMEATRETLR-------------KNNLRSAYIRPLVFRGDGDLGLN-----PRAGYKPDVIIAAWPWGA 120 (298)
T ss_pred ------CCHHHHHHHHHHHHH-------------hcCCCCEEEEEEEEEccCCCCcC-----CCCCCCceEEEEEecccc
Confidence 578899999999887 45566899999999998765443 112335677788777754
Q ss_pred cccc-ccCCCceEEEecccccccccccccccccc----hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCC
Q 020676 163 FVFG-VEGTGARLALVGRGRDVAEAKYSDWVRLR----KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNS 235 (323)
Q Consensus 163 ~~~~-~~~~g~~l~~~~~~r~~~~~k~~~~~~~~----~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~ 235 (323)
.... .+.+|+++.++..+|..+.......|+.+ ++++ +|+++|+||+|+.+.+|+|+||+++|||+|++++
T Consensus 121 ~~~~~~~~~g~~l~~~~~~r~~~~~~~~~~K~~~~yl~~v~a~~~a~~~g~de~l~ld~~g~v~E~s~sNlf~v~~~~-- 198 (298)
T TIGR01122 121 YLGEEALEKGIDAKVSSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDVEGYVAEGSGENIFIVKDGV-- 198 (298)
T ss_pred ccCcccccCCeEEEEEEEEcCCCCCcCccchhhhhhHHHHHHHHHHHHcCCCEEEEECCCCCEEECCceEEEEEECCE--
Confidence 3221 23569999888888765443333444432 3443 6889999999877654499999999999999988
Q ss_pred chhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 236 EAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+|||+++++|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||+||.+.+
T Consensus 199 -----------------l~TP~~~~~~L~GItR~~il~la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~id 260 (298)
T TIGR01122 199 -----------------LFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREVD 260 (298)
T ss_pred -----------------EECCCCCCCcCcchHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999964
No 9
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=4.6e-48 Score=365.14 Aligned_cols=249 Identities=19% Similarity=0.187 Sum_probs=199.1
Q ss_pred CCCccEEEECCeeecCCCC--CccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCC
Q 020676 1 MTSTRIVFSNGVVSQASDT--PSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPT 75 (323)
Q Consensus 1 m~~~~~~~~nG~~~~~~~~--~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~ 75 (323)
|.-.+++|+||+++ +.++ +.++++||+ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~~~~~~~~ng~~v-~~~~~~~~i~~~drgl~yGdgvFEtir~~~G--~~~~l~~Hl~RL~~Sa~~L~i~~p-------- 69 (290)
T PRK12400 1 MAYERFVLWNDAVI-DTTKQKTYIELEERGLQFGDGVYEVIRLYKG--NFHLLDPHITRLYRSMEEIELTLP-------- 69 (290)
T ss_pred CCcccEEEECCEEe-chHHcCceeccccchhhhcceEEEEEEEECC--EecccHHHHHHHHHHHHHhCCCCC--------
Confidence 55567899999999 9884 459999986 9999999999998 899999999999999999999643
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCC-CceEEEEEEEeecCCCCCcccCCCCCCCcceEEE
Q 020676 76 PSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDG-EELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVS 154 (323)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~-~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~ 154 (323)
++.+++++.+.++++ +++. .+++||+++++|.+.+++.. +....++++
T Consensus 70 -------------~~~~~l~~~l~~~~~-------------~~~~~~~~~iri~v~rG~~~~~~~~-----~~~~~~~~~ 118 (290)
T PRK12400 70 -------------FSKAELITLLYKLIE-------------NNNFHEDGTIYLQVSRGVQARTHTF-----SYDVPPTIY 118 (290)
T ss_pred -------------CCHHHHHHHHHHHHH-------------hcCCCCCEEEEEEEEeCCCCCCCCC-----CCCCCcEEE
Confidence 578899999988887 3443 57899999999876554321 122345666
Q ss_pred EEEecCCCccccccCCCceEEEecccccc-cccccccccccchHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEc
Q 020676 155 VHFSGYVPFVFGVEGTGARLALVGRGRDV-AEAKYSDWVRLRKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCR 231 (323)
Q Consensus 155 v~~~~~~~~~~~~~~~g~~l~~~~~~r~~-~~~k~~~~~~~~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~ 231 (323)
+.+.+.+. ...+..+|+++......+.. +..|+.++. .++++ +|+++|+||+|+.++| +|+||+++|||++++
T Consensus 119 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Kt~nyl--~~vla~~ea~~~g~deaL~l~~g-~v~E~t~sNif~v~~ 194 (290)
T PRK12400 119 AYITKKER-PALWIEYGVRAISEPDTRWLRCDIKSLNLL--PNILAATKAERKGCKEALFVRNG-TVTEGSHSNFFLIKN 194 (290)
T ss_pred EEEecccC-chhHHhcCcEEEECCCCCccCCCCcccccH--HHHHHHHHHHHcCCCEEEEEcCC-EEEEcCceEEEEEEC
Confidence 66555332 22233568877655433322 334544332 34554 6888999999776655 999999999999999
Q ss_pred CCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEE
Q 020676 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLI 311 (323)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~ 311 (323)
++ |+|||+++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||+||.
T Consensus 195 ~~-------------------l~TPpl~~g~L~GItR~~llela~~~gi~v~E~~i~~~eL~~Adevfltns~~gv~PV~ 255 (290)
T PRK12400 195 GT-------------------LYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMT 255 (290)
T ss_pred CE-------------------EEeCCCCCCcCcCHHHHHHHHHHHHcCCcEEEEeCCHHHHHhCCeeeEccCcceEEEEE
Confidence 98 99999999999999999999999999999999999999999999999999999999999
Q ss_pred Eec
Q 020676 312 AQK 314 (323)
Q Consensus 312 ~~~ 314 (323)
+.+
T Consensus 256 ~i~ 258 (290)
T PRK12400 256 HLD 258 (290)
T ss_pred EEC
Confidence 854
No 10
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=9e-48 Score=363.69 Aligned_cols=244 Identities=19% Similarity=0.204 Sum_probs=198.6
Q ss_pred ccEEEECC-----eeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCC
Q 020676 4 TRIVFSNG-----VVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPT 75 (323)
Q Consensus 4 ~~~~~~nG-----~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~ 75 (323)
+.++|+|| +++ +.+++.++++|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 6 ~~~~~~ng~~~~~~~~-~~~~a~i~~~drg~~~GdgvFEt~rv~~g--~i~~l~~Hl~RL~~Sa~~l~i~~~-------- 74 (292)
T PRK07849 6 PVVVTLDPYGGSERVH-DPSAPLLHADDLAAVRGDGVFETLLVRDG--RPCNLEAHLERLARSAALLDLPEP-------- 74 (292)
T ss_pred eEEEEECCCCccceEe-chHHCCccchhcchhccceEEEEEEEECC--EECCHHHHHHHHHHHHHhcCCCCC--------
Confidence 67999999 999 9999999999986 9999999999998 899999999999999999999543
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEE
Q 020676 76 PSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSV 155 (323)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v 155 (323)
+.+.|++.|.++++.+ ..+..+++||++++++.+++ ..+.+++
T Consensus 75 --------------~~~~l~~~i~~~v~~~-----------~~~~~~~~iRl~v~~g~~~~------------~~~~~~i 117 (292)
T PRK07849 75 --------------DLDRWRRAVELAIEEW-----------RAPEDEAALRLVYSRGRESG------------GAPTAWV 117 (292)
T ss_pred --------------CHHHHHHHHHHHHHHh-----------cCCCCCeEEEEEEeCCCCCC------------CCCeEEE
Confidence 6778999988888731 00346889999999887532 1356677
Q ss_pred EEecCCCccccccCCCceEEEecccccc------c----ccccccccccchHHHhhCCCCCCeEEEecCCCeEEecCcce
Q 020676 156 HFSGYVPFVFGVEGTGARLALVGRGRDV------A----EAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITN 225 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~l~~~~~~r~~------~----~~k~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Eg~~sN 225 (323)
.+.|+++.....+.+|+++.++..++.. | ..|..+|........+|+++|+||+|+.|++|+|+||+++|
T Consensus 118 ~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~~~~~~Kt~ny~~~i~a~~~A~~~g~dd~L~ld~~G~v~E~s~~N 197 (292)
T PRK07849 118 TVSPVPERVARARREGVSVITLDRGYPSDAAERAPWLLAGAKTLSYAVNMAALRYAARRGADDVIFTSTDGYVLEGPTST 197 (292)
T ss_pred EEeecCccchhhccCCeEEEEEeccccCcccccCcccccccchhhhHHHHHHHHHHHHcCCCEEEEEcCCCcEEECCceE
Confidence 7777765433344678888877654321 1 12322222111233478899999997766555999999999
Q ss_pred EEEEEcCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCcc
Q 020676 226 FFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYS 305 (323)
Q Consensus 226 lF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~ 305 (323)
||++++++ |+|||+++|+|+||||+.||++|++.|++|+|+.++++||.+|||+|+|||++
T Consensus 198 if~~~~g~-------------------l~TP~~~~giL~GItR~~vie~~~~~g~~v~er~i~~~eL~~Adevfltns~~ 258 (292)
T PRK07849 198 VVIATDDR-------------------LLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVR 258 (292)
T ss_pred EEEEECCE-------------------EECCCCcCCCCccHHHHHHHHHHHHcCCceEEEECCHHHHhhCCEEEEecCcc
Confidence 99999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEec
Q 020676 306 SSFDLIAQK 314 (323)
Q Consensus 306 gv~pV~~~~ 314 (323)
||+||++.+
T Consensus 259 gi~pV~~id 267 (292)
T PRK07849 259 LAARVHTLD 267 (292)
T ss_pred eEEEEEEEC
Confidence 999999864
No 11
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=7.2e-48 Score=362.47 Aligned_cols=244 Identities=20% Similarity=0.241 Sum_probs=196.3
Q ss_pred EEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCC
Q 020676 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~ 82 (323)
++|+||+++ +.+++.++++|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.
T Consensus 1 ~~~~nG~~~-~~~~~~v~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~---------------- 61 (283)
T PRK07650 1 LIYVNGQYV-EEEEARISPFDHGYLYGLGVFETFRIYNG--HPFLLDDHYDRLNDALDTLQIEW---------------- 61 (283)
T ss_pred CEEECCEEe-EHHHCeecccccccccccEEEEEEEEECC--EEEcHHHHHHHHHHHHHHhCCCC----------------
Confidence 489999999 9999999999986 9999999999998 89999999999999999999953
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCC
Q 020676 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVP 162 (323)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 162 (323)
+++.+.+++.+.++++ .++..+++||++|+++.+.+++. +.....+++++++.|+++
T Consensus 62 -----~~~~~~l~~~l~~~~~-------------~~~~~~~~iRl~v~rg~~~~~~~-----~~~~~~~~~~i~~~~~~~ 118 (283)
T PRK07650 62 -----TMTKDEVLLILKNLLE-------------KNGLENAYVRFNVSAGIGEIGLQ-----TEMYEEPTVIVYMKPLAP 118 (283)
T ss_pred -----CCCHHHHHHHHHHHHH-------------hcCCCcEEEEEEEEeCCCCCCCC-----CCCCCCCEEEEEEEcCCC
Confidence 3478889998888887 34456899999999987654332 123345778888888765
Q ss_pred ccccccCCCceEEEecccccccccccccccccc---hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCch
Q 020676 163 FVFGVEGTGARLALVGRGRDVAEAKYSDWVRLR---KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEA 237 (323)
Q Consensus 163 ~~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~~---~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~ 237 (323)
........++ ++...|..+.. ..+.|+.+ ++++ +|+++|+||+||.|++|+|+||+++|||++++++
T Consensus 119 ~~~~~~~~~~---~~~~~~~~~~~-~~~~Kt~~y~~~v~a~~~a~~~g~de~llln~~G~v~E~s~sNif~v~~g~---- 190 (283)
T PRK07650 119 PGLPAEKEGV---VLKQRRNTPEG-AFRLKSHHYLNNILGKREIGNDPNKEGIFLTEEGYVAEGIVSNLFWVKGDI---- 190 (283)
T ss_pred CChhhcCeEE---EEEEEecCCCC-CcchhHHhHHHHHHHHHHHHHcCCCeEEEECCCCeEEEcCceEEEEEECCE----
Confidence 3322212233 23333433322 23344432 3333 5778999999777655599999999999999998
Q ss_pred hhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 238 EDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 238 ~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+|||+++|+|+||||+.||++|++.|++|+|+.++++||..|||+|+|||++||+||.+.+
T Consensus 191 ---------------l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i~ 252 (283)
T PRK07650 191 ---------------VYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRIE 252 (283)
T ss_pred ---------------EEcCCCcCCCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999854
No 12
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=3.4e-47 Score=356.81 Aligned_cols=244 Identities=18% Similarity=0.165 Sum_probs=197.8
Q ss_pred EEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCC
Q 020676 7 VFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIR 83 (323)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~ 83 (323)
+|+||+++ +.+++.+++.|++ |||+|||||+++| ++|+|++|++||.+||+.|+|+.|
T Consensus 2 ~~~nG~~~-~~~~~~i~~~drgl~yGdgvFEtir~~~g--~~~~l~~H~~RL~~Sa~~l~i~~~---------------- 62 (276)
T TIGR01121 2 VLWNGQLV-EREEAKIDIEDRGYQFGDGVYEVIRVYNG--KLFTVNEHIDRLYASAAKIRIDIP---------------- 62 (276)
T ss_pred EEECCEEe-EHHHCeecccccccccccEEEEEEEEECC--EEeChHHHHHHHHHHHHHhCCCCC----------------
Confidence 68999999 9999999999976 9999999999998 999999999999999999999543
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCc
Q 020676 84 TPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPF 163 (323)
Q Consensus 84 ~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 163 (323)
++.+.+++.|.++++ +++..+++||+.+++|.+.+++. .+..+..+.+++...++++.
T Consensus 63 -----~~~~~l~~~i~~~~~-------------~~~~~~~~irl~~~rg~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 120 (276)
T TIGR01121 63 -----YTKEELHQLLHELVE-------------KNNLNTGHVYFQVTRGVAPRNHQ----FPAGTVKPVITAYTKEVPRP 120 (276)
T ss_pred -----CCHHHHHHHHHHHHH-------------hcCCCceEEEEEEEcCCCCcCCC----CCCCCCCcEEEEEEecccCC
Confidence 578899999999887 45566889999999886544322 12122345666666665432
Q ss_pred cccccCCCceEEEeccccc-ccccccccccccchHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhh
Q 020676 164 VFGVEGTGARLALVGRGRD-VAEAKYSDWVRLRKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDK 240 (323)
Q Consensus 164 ~~~~~~~g~~l~~~~~~r~-~~~~k~~~~~~~~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~ 240 (323)
. ..+.+|+++.++...|. .+..|..+|. .++++ +|+++|+||+|+.++| +|+||+++|||++++++
T Consensus 121 ~-~~~~~gv~~~~~~~~~~~~~~~K~~nyl--~~vla~~eA~~~g~de~l~~~~g-~v~E~~~sNif~v~~~~------- 189 (276)
T TIGR01121 121 E-ENLEKGVKAITVEDIRWLRCDIKSLNLL--GNVLAKQEAHEKGAYEAILHRGG-TVTEGSSSNVYGIKDGV------- 189 (276)
T ss_pred h-hHHhcCeEEEEecCCCccCCCcchhhhH--HHHHHHHHHHHcCCCEEEEecCC-eEEecCceeEEEEECCE-------
Confidence 2 22356887666544332 2334433322 24444 6889999999877655 99999999999999988
Q ss_pred hhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 241 FLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 241 ~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+|||+++|+|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+.+
T Consensus 190 ------------~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~~id 251 (276)
T TIGR01121 190 ------------LYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEID 251 (276)
T ss_pred ------------EEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999963
No 13
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=9e-47 Score=363.23 Aligned_cols=243 Identities=11% Similarity=0.083 Sum_probs=196.9
Q ss_pred EEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCC
Q 020676 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~ 82 (323)
.+|+||+++ +.+++.+++.|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 42 ~~~~nG~~v-~~~~a~i~~~Drgl~~GdGvFETirv~~G--~~~~le~Hl~RL~~Sa~~L~i~~p--------------- 103 (336)
T PLN02845 42 SSVVGGITT-DPAAMVIPLDDHMVHRGHGVFDTATIRDG--HLYELDAHLDRFLRSAAKAKIPLP--------------- 103 (336)
T ss_pred eEEECCEEc-cHHHCcccccccceeecceEEEEEEEECC--EEcCHHHHHHHHHHHHHhhCCCCC---------------
Confidence 589999999 9999999999987 9999999999998 899999999999999999999543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCC
Q 020676 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVP 162 (323)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 162 (323)
++.++|++.|.++++ +++..+++||++|++|.+++++. ...+..+++++.+.|.+.
T Consensus 104 ------~~~~~l~~~i~~~i~-------------~~~~~~~~irl~vtrG~g~~~~~-----~~~~~~~~~~i~~~~~~~ 159 (336)
T PLN02845 104 ------FDRATLRRILLQTVA-------------ASGCRNGSLRYWLSAGPGGFSLS-----PSGCSEPAFYAVVIEDTY 159 (336)
T ss_pred ------CCHHHHHHHHHHHHH-------------hcCCCcEEEEEEEEeCCCCCCCC-----CCCCCCCEEEEEEccccc
Confidence 578899999999887 35556889999999987643221 123345677777665432
Q ss_pred ccccccCCCceEEEecccccccccccccccccc---hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEE-cCCCCc
Q 020676 163 FVFGVEGTGARLALVGRGRDVAEAKYSDWVRLR---KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVC-RKDNSE 236 (323)
Q Consensus 163 ~~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~~---~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~-~~~~~~ 236 (323)
... ..+|+++.++..+|..+. ...+|+.+ ++++ +|+++|+||+||.|.+|+|+||+++|||+++ +++
T Consensus 160 ~~~--~~~gv~l~~~~~~~~~~~--~~~~Kt~nyl~~vla~~eA~~~G~deaLlln~~G~V~Egt~sNiF~v~~~~~--- 232 (336)
T PLN02845 160 AQD--RPEGVKVVTSSVPIKPPQ--FATVKSVNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGE--- 232 (336)
T ss_pred ccc--ccCCeEEEEeeeeecCCc--cccchhhhhHHHHHHHHHHHHcCCCEEEEECCCCcEEEcCcceEEEEEECCE---
Confidence 221 146888888876664331 12344332 3443 6889999999877755599999999999885 777
Q ss_pred hhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhC---C--CcEEEEecCHHHHhhcceeEEecCccceEEEE
Q 020676 237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSK---G--IPIRELASSWSQHELWKEAFITSKYSSSFDLI 311 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~---g--i~v~e~~~~~~dL~~adEvFltns~~gv~pV~ 311 (323)
|+|||+++ +|+||||+.||++|+++ | ++|+|+.++++||.+|||+|+|||++||+||.
T Consensus 233 ----------------l~TP~l~~-iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~ 295 (336)
T PLN02845 233 ----------------LVLPPFDK-ILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIV 295 (336)
T ss_pred ----------------EEeCCCCC-cCccHHHHHHHHHHHhhhccCCceEEEEEecCHHHHhcCCEEEEecCcccEEEEE
Confidence 99999974 99999999999999986 8 99999999999999999999999999999999
Q ss_pred Eec
Q 020676 312 AQK 314 (323)
Q Consensus 312 ~~~ 314 (323)
+.+
T Consensus 296 ~id 298 (336)
T PLN02845 296 SWD 298 (336)
T ss_pred EEC
Confidence 854
No 14
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=9.6e-47 Score=351.95 Aligned_cols=240 Identities=21% Similarity=0.216 Sum_probs=190.0
Q ss_pred EEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCC
Q 020676 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~ 82 (323)
++|+||++. +.++++|++ |||+|||+|+++| ++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~~~nG~~~-----~~i~~~d~g~~~GdgvFEtir~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~~--------------- 58 (268)
T PRK06092 1 MFWINGQPQ-----ESLSVSDRSTQYGDGCFTTARVRDG--QVSLLSRHLQRLQDACERLAIPLD--------------- 58 (268)
T ss_pred CEEECCcCc-----CccCccccccccccceeeEEEEECC--eeccHHHHHHHHHHHHHhcCCCCC---------------
Confidence 479999964 678988876 9999999999998 899999999999999999999532
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCC
Q 020676 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVP 162 (323)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 162 (323)
+.+.+.+.+.+++. +..+++||++++++.+++++. .+....+.+++.+.|+++
T Consensus 59 -------~~~~~~~~l~~~~~---------------~~~~~~iri~v~~g~~~~~~~-----~~~~~~~~~~i~~~~~~~ 111 (268)
T PRK06092 59 -------DWAQLEQEMKQLAA---------------ELENGVLKVIISRGSGGRGYS-----PAGCAAPTRILSVSPYPA 111 (268)
T ss_pred -------CHHHHHHHHHHHHh---------------hCCCeEEEEEEEccCCCCCCC-----CCCCCCCeEEEEeccCCc
Confidence 34555555554442 234789999999987655432 123345677777788765
Q ss_pred ccccccCCCceEEEecccccccccccccccccc---hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCch
Q 020676 163 FVFGVEGTGARLALVGRGRDVAEAKYSDWVRLR---KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEA 237 (323)
Q Consensus 163 ~~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~~---~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~ 237 (323)
.....+.+|+++.++..++..+. ...+.|+.+ ++++ +|+++|+||+|+.|++|+|+||+++|||++++++
T Consensus 112 ~~~~~~~~gv~l~~~~~~~~~~~-~~~~~Kt~ny~~~~~a~~~A~~~g~de~l~l~~~g~v~E~s~sNif~v~~~~---- 186 (268)
T PRK06092 112 HYSRWREQGITLALCPTRLGRNP-LLAGIKHLNRLEQVLIRAELEQTEADEALVLDSEGWVIECCAANLFWRKGGV---- 186 (268)
T ss_pred cChhHhhCCEEEEEeccccCCCC-CccCcchhhhHHHHHHHHHHHhcCCCEEEEECCCCCEEEccceEEEEEECCE----
Confidence 54444457898888776553211 112233332 3444 6888999999887755599999999999999998
Q ss_pred hhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 238 EDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 238 ~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+|||++.++||||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+.+
T Consensus 187 ---------------~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id 248 (268)
T PRK06092 187 ---------------VYTPDLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIG 248 (268)
T ss_pred ---------------EECCCccccCcccHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEEC
Confidence 99999998999999999999999999999999999999999999999999999999999864
No 15
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=1.3e-46 Score=349.66 Aligned_cols=239 Identities=20% Similarity=0.175 Sum_probs=191.4
Q ss_pred EECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCC
Q 020676 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRT 84 (323)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~~ 84 (323)
|+||+.. +.+++.|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~nG~~~-----~~i~~~d~g~~~G~gvFEt~r~~~G--~~~~l~~Hl~RL~~Sa~~l~~~~~----------------- 56 (261)
T TIGR03461 1 WVNGVLQ-----TQISVSDRGLQYGDGCFTTAKVRNG--KIELLDLHLERLQDAAARLGIPLP----------------- 56 (261)
T ss_pred CcCCccc-----CccCcccccccccceeEEEEEEECC--EeccHHHHHHHHHHHHHhhCCCCC-----------------
Confidence 7899964 678888876 9999999999998 899999999999999999999543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCcc
Q 020676 85 PSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFV 164 (323)
Q Consensus 85 ~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~ 164 (323)
+.+.+++.+.++++ .+ .+++||++|+++.+++++. .+.+..+.+++.+.|+++..
T Consensus 57 -----~~~~l~~~~~~~~~-------------~~--~~~~ir~~v~~g~~~~~~~-----~~~~~~~~~~i~~~~~~~~~ 111 (261)
T TIGR03461 57 -----DWDALREEMAQLAA-------------GY--SLGVLKVIISRGSGGRGYS-----PPGCSDPTRIISVSPYPAHY 111 (261)
T ss_pred -----CHHHHHHHHHHHHH-------------hC--CCeEEEEEEecCCCCCCCC-----CCCCCCCcEEEEeccCcccC
Confidence 57788888888776 22 3689999999887654332 12234456677777776544
Q ss_pred ccccCCCceEEEecccccc----cccccccccccchHHHhhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhh
Q 020676 165 FGVEGTGARLALVGRGRDV----AEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDK 240 (323)
Q Consensus 165 ~~~~~~g~~l~~~~~~r~~----~~~k~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~ 240 (323)
..++.+|+++.++..++.. +..|..++........+|+++|+||+||.|++|+|+|++++|||++++++
T Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~~~~~Kt~~y~~~~~a~~~A~~~g~de~llln~~g~v~E~s~sNif~~~~~~------- 184 (261)
T TIGR03461 112 SAWQQQGIRLGVSPVRLGRNPLLAGIKHLNRLEQVLIKAELENSEADEALVLDTDGNVVECTAANIFWRKGNQ------- 184 (261)
T ss_pred hhHhcCCEEEEEeccccCCCCCCcCccccccHHHHHHHHHhhhcCCCEEEEECCCCCEEEeccEEEEEEECCE-------
Confidence 3444578888888765432 22343333222223346889999999877755599999999999999998
Q ss_pred hhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 241 FLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 241 ~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+|||+++|+|+||||+.||++|++.|++|+|+.++++||..|||+|+|||++||+||.+.+
T Consensus 185 ------------l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~i~~~eL~~ade~f~~ns~~gi~pV~~id 246 (261)
T TIGR03461 185 ------------VFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAIG 246 (261)
T ss_pred ------------EECCCccccCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEeCCccceEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999864
No 16
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=344.86 Aligned_cols=237 Identities=16% Similarity=0.110 Sum_probs=193.2
Q ss_pred ccEEEECCeeecCCCCCccCccccCcCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCC
Q 020676 4 TRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIR 83 (323)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~ 83 (323)
.+++|+||+++ +.+++.+ .+ ++|||+|||||+++| ++++|++|++||.+||+.|++.
T Consensus 2 ~~~~~~nG~~~-~~~~a~~-~~-~~GdgvFETir~~~g--~~~~l~~Hl~RL~~sa~~l~~~------------------ 58 (266)
T PRK09266 2 MPLIELNGRPA-TAEDLAA-LA-LANYGHFTSMQVRDG--RVRGLDLHLQRLRRASRELFGA------------------ 58 (266)
T ss_pred ccEEEECCEEC-CHHHhhh-Hh-hccceEEEEEEEECC--EEcCHHHHHHHHHHHHHHHhCC------------------
Confidence 47899999999 9888875 33 458999999999998 8999999999999999999652
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCc
Q 020676 84 TPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPF 163 (323)
Q Consensus 84 ~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 163 (323)
+++.+.+++.+.++++ ++..+++||++++++.+.+ |.++....+++++.+.|+++.
T Consensus 59 ----~~~~~~l~~~l~~~~~--------------~~~~~~~ir~~v~r~~g~~------~~~~~~~~~~~~i~~~~~~~~ 114 (266)
T PRK09266 59 ----ALDDDRVRAQLRAALA--------------AGPADASVRVTVFAPDFDF------RNPLADVAPDVLVATSPPADG 114 (266)
T ss_pred ----CCCHHHHHHHHHHHHh--------------cCCCcEEEEEEEEecCccc------CCCCCCCCceEEEEEecCCcC
Confidence 2478888888888874 2345789999999876543 222223446677776665432
Q ss_pred cccccCCCceEEEecccccccccccccccccchHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhhh
Q 020676 164 VFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKF 241 (323)
Q Consensus 164 ~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~~ 241 (323)
. .+|+++.++...|..+..|..++. .++++ +|+++|+||+||.|.+|+|+||+++|||++++++
T Consensus 115 ~----~~~v~l~~~~~~r~~~~~K~~~~l--~~vla~~~a~~~g~de~l~ln~~g~v~E~~~sNlf~v~~~~-------- 180 (266)
T PRK09266 115 P----AGPLRLQSVPYERELPHIKHVGTF--GQLHLRRLAQRAGFDDALFVDPDGRVSEGATWNLGFWDGGA-------- 180 (266)
T ss_pred C----CCCeEEEEEEecccCCCCCCCCcH--HHHHHHHHHHHcCCCeEEEEcCCCcEEEcCceEEEEEECCE--------
Confidence 2 468888888877877766655443 34444 6888999999877755599999999999999988
Q ss_pred hhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 242 LQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 242 ~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+||+. |+||||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+.+
T Consensus 181 -----------l~TP~~--~~L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~ 240 (266)
T PRK09266 181 -----------VVWPQA--PALPGVTMALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAID 240 (266)
T ss_pred -----------EECCCC--CccchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEEC
Confidence 999984 799999999999999999999999999999999999999999999999999854
No 17
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=4.6e-45 Score=337.29 Aligned_cols=226 Identities=23% Similarity=0.266 Sum_probs=185.0
Q ss_pred CcCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhh
Q 020676 28 ERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMN 107 (323)
Q Consensus 28 ~G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~~~ 107 (323)
+|||+|||||+++| ++++|++|++||.+||+.|+|+. +++.+.|++.+.++++
T Consensus 6 ~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~sa~~l~~~~---------------------~~~~~~~~~~i~~~~~---- 58 (256)
T cd00449 6 YGDGVFEGLRAGKG--RLFRLDEHLDRLNRSAKRLGLPI---------------------PYDREELREALKELVA---- 58 (256)
T ss_pred ccceEEEEEEEcCc--EEEChHHHHHHHHHHHHHhCCCC---------------------CCCHHHHHHHHHHHHH----
Confidence 49999999999998 89999999999999999999953 2578899999988887
Q ss_pred ccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCccccccCCCceEEEeccccc-----
Q 020676 108 EALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRD----- 182 (323)
Q Consensus 108 ~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~r~----- 182 (323)
.++..+++||++|+++.+.+++. .+.+..+.+++.+.|+++. .....+|+++.++...|.
T Consensus 59 ---------~~~~~~~~ir~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~ 123 (256)
T cd00449 59 ---------ANNGASLYIRPLLTRGVGGLGVA-----PPPSPEPTFVVFASPVGAY-AKGGEKGVRLITSPDRRRAAPGG 123 (256)
T ss_pred ---------hCCCCCEEEEEEEEecccccCCC-----CCCCCCcEEEEEEeecccc-ccccCCCeEEEEeeeEEeCCCCC
Confidence 34567899999999987655432 1234557788887777654 233457899988887764
Q ss_pred ccccccccccccchHHHhhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCccEEEecCCCCCC
Q 020676 183 VAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGV 262 (323)
Q Consensus 183 ~~~~k~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~gi 262 (323)
.+..|+.++........+|+++|+||+||.|+.|+|+||+++|||++++++ |+|||+++|+
T Consensus 124 ~~~~Kt~~~~~~~~a~~~a~~~g~de~llld~~g~v~E~s~sNlf~~~~~~-------------------l~TP~~~~g~ 184 (256)
T cd00449 124 TGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNGYVTEGSASNVFIVKDGE-------------------LVTPPLDGGI 184 (256)
T ss_pred CccchhhCCHHHHHHHHHHHHcCCCEEEEECCCCcEEEcCceEEEEEECCE-------------------EEeCCCCCCc
Confidence 223444444211123346788999999877664599999999999999998 9999999999
Q ss_pred CccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 263 LPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 263 L~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||.+..
T Consensus 185 L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~ 236 (256)
T cd00449 185 LPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEID 236 (256)
T ss_pred CcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999854
No 18
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=2.1e-44 Score=349.40 Aligned_cols=251 Identities=15% Similarity=0.162 Sum_probs=196.0
Q ss_pred EECCeeecCCCCCccCccccC---cCeeEEEEEEEc---CCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020676 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (323)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~---g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~ 81 (323)
|+||+++ |.+++.++++|++ |||+|||+|+++ |+.++|+|++|++||.+||+.|+|+.
T Consensus 42 ~~nG~~v-p~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~L~i~~--------------- 105 (356)
T PRK13357 42 WHDARLV-PYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPE--------------- 105 (356)
T ss_pred ccCCeEe-eCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCCCC---------------
Confidence 9999999 9999999999976 999999999984 32357889999999999999999942
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCC
Q 020676 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (323)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (323)
++.+.|++.+.++++.+-....+ ......++||++++++.+.+++ .+. ..+++++.+.|++
T Consensus 106 -------~~~~~l~~~i~~li~~n~~~~~~-----~~~~~~~~ir~~v~rg~~~~g~------~~~-~~~~~~i~~~~~~ 166 (356)
T PRK13357 106 -------LPEELFLEAVKQLVKADRDWVPP-----YGEGASLYLRPFMIATEPFLGV------KPA-EEYIFCVIASPVG 166 (356)
T ss_pred -------CCHHHHHHHHHHHHHhcccccCC-----CCCCccEEEEEEEEccCCcccc------cCC-CccEEEEEEEech
Confidence 37889999999999842100000 0112467999999988765433 221 2467777777765
Q ss_pred CccccccCCCceEEEe-cccccccccccccccc-c---chHHH--hhCCCCCCeEEEec--CCCeEEecCcceEEEEEcC
Q 020676 162 PFVFGVEGTGARLALV-GRGRDVAEAKYSDWVR-L---RKPLE--KLRPPSVTELLLSN--DGDQLLEGSITNFFVVCRK 232 (323)
Q Consensus 162 ~~~~~~~~~g~~l~~~-~~~r~~~~~k~~~~~~-~---~~~l~--~a~~~g~de~lL~~--~gg~v~Eg~~sNlF~v~~~ 232 (323)
+.... ..+|+++.++ ...|..+... ...|+ + .++++ +|+++|+||+||.+ ++|+|+|++++|||+++++
T Consensus 167 ~~~~~-~~~~v~l~~~~~~~r~~~~~l-~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v~~~ 244 (356)
T PRK13357 167 AYFKG-GVKPVSIWVSDEYDRAAPGGT-GAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKD 244 (356)
T ss_pred hhccc-CCCceEEEEcCCeEecCCCCc-chhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEEECC
Confidence 43221 1257777666 5566554322 34444 2 24444 68899999997665 2459999999999999998
Q ss_pred CCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHH------HhhcceeEEecCccc
Q 020676 233 DNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQ------HELWKEAFITSKYSS 306 (323)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~d------L~~adEvFltns~~g 306 (323)
+ |+|||++.|||+||||+.||++|+++|++|+|++++++| |.+|||+|+|||+.|
T Consensus 245 ~-------------------l~TPpl~~giL~GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~AdevFltnS~~g 305 (356)
T PRK13357 245 G-------------------TVTPPLSGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAV 305 (356)
T ss_pred E-------------------EEECCCCCCCCcchHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcceEEEEcccccE
Confidence 8 999999999999999999999999999999999999999 899999999999999
Q ss_pred eEEEEEec
Q 020676 307 SFDLIAQK 314 (323)
Q Consensus 307 v~pV~~~~ 314 (323)
|+||.+.+
T Consensus 306 i~PV~~id 313 (356)
T PRK13357 306 ITPIGGIK 313 (356)
T ss_pred EEEEEEEE
Confidence 99999964
No 19
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=4.3e-44 Score=336.43 Aligned_cols=238 Identities=18% Similarity=0.178 Sum_probs=188.0
Q ss_pred cCccccC---cCeeEEEEEEEc---CCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 020676 22 VSTFLQE---RRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWE 95 (323)
Q Consensus 22 is~~~~~---G~GvFEt~r~~~---g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (323)
++++|++ |||+|||+|+++ |++++|+|++|++||.+||+.|+|+ | ++.+.|+
T Consensus 2 i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~-~---------------------~~~~~l~ 59 (279)
T cd01557 2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLP-P---------------------FSVEEFI 59 (279)
T ss_pred cCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCC-C---------------------CCHHHHH
Confidence 5677765 999999999999 2128999999999999999999995 2 4788999
Q ss_pred HHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCccccccCCCceEE
Q 020676 96 SMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLA 175 (323)
Q Consensus 96 ~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 175 (323)
+.+.++++.+ ..+.| .....+++||++|+++.+.+++ .+. ..+++++.+.|+++.... +.+|+++.
T Consensus 60 ~~i~~~i~~~-~~~~~-----~~~~~~~~ir~~v~rg~~~~g~------~~~-~~~~~~i~~~~~~~~~~~-~~~gv~l~ 125 (279)
T cd01557 60 DAIKELVKLD-ADWVP-----YGGGASLYIRPFIFGTDPQLGV------SPA-LEYLFAVFASPVGAYFKG-GEKGVSAL 125 (279)
T ss_pred HHHHHHHHhc-cccCC-----CCCCCCEEEEEEEEeccccCCc------CCC-CccEEEEEEEEccccccC-CCCCeEEE
Confidence 9999998732 11111 1134678999999998765433 322 456777777777654332 34689998
Q ss_pred Eecccccccccccccccc-c---chHHH--hhCCCCCCeEEEecCC-CeEEecCcceEEEEEcCCCCchhhhhhhhcCCC
Q 020676 176 LVGRGRDVAEAKYSDWVR-L---RKPLE--KLRPPSVTELLLSNDG-DQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNS 248 (323)
Q Consensus 176 ~~~~~r~~~~~k~~~~~~-~---~~~l~--~a~~~g~de~lL~~~g-g~v~Eg~~sNlF~v~~~~~~~~~~~~~~~~~~~ 248 (323)
++..+|..+.. ....|. + .++++ +|+++|+||+||.+++ |+|+||+++|||++++++
T Consensus 126 ~~~~~r~~~~~-~~~~K~~~nyl~~vla~~eA~~~g~de~l~ld~~~g~v~E~~~sNlf~v~~~~--------------- 189 (279)
T cd01557 126 VSSFRRAAPGG-PGAAKAGGNYAASLLAQKEAAEKGYDQALWLDGAHGYVAEVGTMNIFFVKDGE--------------- 189 (279)
T ss_pred EeeEEcCCCCC-CcccchhhccHHHHHHHHHHHHCCCCEEEEEcCCCCEEEEeCcEEEEEEECCE---------------
Confidence 88877765521 122332 2 34444 6889999999776643 599999999999999988
Q ss_pred CccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEech
Q 020676 249 HSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKR 315 (323)
Q Consensus 249 ~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~~ 315 (323)
|+|||+++++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|||++||+||++...
T Consensus 190 ----l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~ 252 (279)
T cd01557 190 ----LITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDY 252 (279)
T ss_pred ----EEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999999998543
No 20
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=5.6e-44 Score=329.98 Aligned_cols=223 Identities=23% Similarity=0.263 Sum_probs=182.0
Q ss_pred cCcCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhh
Q 020676 27 QERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSM 106 (323)
Q Consensus 27 ~~G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~~ 106 (323)
++|||+|||||+++| ++++|++|++||.+||+.|+|+ | ++.+.|++.|.++++
T Consensus 5 ~~GdgvFEt~~~~~g--~~~~l~~Hl~RL~~Sa~~l~~~-~---------------------~~~~~l~~~i~~~i~--- 57 (249)
T cd01559 5 AYGDGVFETMRALDG--RLFLLDAHLARLERSARRLGIP-E---------------------PDLPRLRAALESLLA--- 57 (249)
T ss_pred cccceeEEEEEEECC--EEccHHHHHHHHHHHHHhcCcC-C---------------------CCHHHHHHHHHHHHH---
Confidence 349999999999998 8999999999999999999995 2 478899999988887
Q ss_pred hccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCccccccCCCceEEEeccccccccc
Q 020676 107 NEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEA 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~r~~~~~ 186 (323)
+++..+++||++|+++.+.+++. ...+..+.+++.+.|+++ ..+.+|+++.++..+|..+.
T Consensus 58 ----------~~~~~~~~ir~~v~rg~~~~~~~-----~~~~~~~~~~i~~~~~~~---~~~~~gv~l~~~~~~~~~~~- 118 (249)
T cd01559 58 ----------ANDIDEGRIRLILSRGPGGRGYA-----PSVCPGPALYVSVIPLPP---AWRQDGVRLITCPVRLGEQP- 118 (249)
T ss_pred ----------hCCCCceEEEEEEecCCCCCCCC-----CCCCCCCEEEEEeccCCH---HHHhCCcEEEEcccccCCCC-
Confidence 34456889999999987654332 123445677777777654 22346899988887764321
Q ss_pred ccccccccc---hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCccEEEecCCCCC
Q 020676 187 KYSDWVRLR---KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDG 261 (323)
Q Consensus 187 k~~~~~~~~---~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~g 261 (323)
...+.|+.+ ++++ +|+++|+||+|+.+++|+|+||+++|||++++++ |+|||+++|
T Consensus 119 ~~~~~Kt~ny~~~~~a~~~a~~~g~de~l~l~~~g~v~E~~~~Nif~~~~~~-------------------~~TP~~~~g 179 (249)
T cd01559 119 LLAGLKHLNYLENVLAKREARDRGADEALFLDTDGRVIEGTASNLFFVKDGE-------------------LVTPSLDRG 179 (249)
T ss_pred CCCCcchhhhHHHHHHHHHHHhcCCCEEEEEcCCCCEEEecceEEEEEECCE-------------------EECCCcccC
Confidence 122334332 3333 6888999999776655599999999999999988 999999999
Q ss_pred CCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020676 262 VLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 262 iL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
+||||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+..
T Consensus 180 ~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~gi~pV~~id 232 (249)
T cd01559 180 GLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAID 232 (249)
T ss_pred ccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCccceeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999865
No 21
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=7e-44 Score=345.43 Aligned_cols=251 Identities=19% Similarity=0.195 Sum_probs=197.0
Q ss_pred EEEECCeeecCCCCCccCccccC---cCeeEEEEEEE---cCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCC
Q 020676 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGL 79 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~---~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~ 79 (323)
.+|+||+++ +.+++.++++|++ |||+|||+|++ +|...+|+|++|++||.+||+.|+|+.|
T Consensus 44 ~~~~ng~~v-~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~~Sa~~L~i~~p------------ 110 (355)
T PLN03117 44 ESFSEGKIV-PYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPP------------ 110 (355)
T ss_pred CeEECCEEE-EchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHHHHHHHhCCCCC------------
Confidence 589999999 9999999999976 99999999999 6622278999999999999999999533
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEec
Q 020676 80 EPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSG 159 (323)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (323)
+.+.|++.|.++++.+ ..+++ .......|+|++++++.+.+++ .+ ...+.+++++.|
T Consensus 111 ----------~~~~l~~~i~~lv~~n-~~~i~-----~~~~~~~yir~~~~g~~~~~g~------~~-~~~~~~~i~~~p 167 (355)
T PLN03117 111 ----------SLEQFVEAVKQTVLAN-KKWVP-----PPGKGTLYIRPLLIGSGAVLGV------AP-APEYTFLIYASP 167 (355)
T ss_pred ----------CHHHHHHHHHHHHHhc-ccccc-----CCCCCcEEEEEEEEEecCccCc------CC-CCCcEEEEEEEe
Confidence 6889999999999843 11111 0123467999999876543322 22 134566777777
Q ss_pred CCCccccccCCCceEEEec-cccccccccccccccc----chHHH--hhCCCCCCeEEEec-C-CCeEEecCcceEEEEE
Q 020676 160 YVPFVFGVEGTGARLALVG-RGRDVAEAKYSDWVRL----RKPLE--KLRPPSVTELLLSN-D-GDQLLEGSITNFFVVC 230 (323)
Q Consensus 160 ~~~~~~~~~~~g~~l~~~~-~~r~~~~~k~~~~~~~----~~~l~--~a~~~g~de~lL~~-~-gg~v~Eg~~sNlF~v~ 230 (323)
+++... ..+|+++.++. .+|..+.. ....|++ .++++ +|+++|+||+|+.+ + +++|+|++++|||+|+
T Consensus 168 ~~~~~~--~~~gi~l~~~~~~~r~~~~~-l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~ 244 (355)
T PLN03117 168 VGNYHK--ASSGLNLKVDHKHRRAHSGG-TGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILK 244 (355)
T ss_pred cccccc--CCCCEEEEEcCceEeCCCCC-ccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEE
Confidence 654332 24688887765 45554422 2344543 23444 68899999996654 3 4599999999999999
Q ss_pred cCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEE
Q 020676 231 RKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDL 310 (323)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV 310 (323)
+++ |+||+++++||+||||+.||++|+++|++|+|+.++++||..|||+|+|||+.+|+||
T Consensus 245 ~~~-------------------l~TP~l~~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltnT~~~I~PV 305 (355)
T PLN03117 245 GNI-------------------VSTPPTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAV 305 (355)
T ss_pred CCE-------------------EEeCCCcCCCCCCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEccCcceEEEE
Confidence 887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 020676 311 IAQK 314 (323)
Q Consensus 311 ~~~~ 314 (323)
.+..
T Consensus 306 ~~i~ 309 (355)
T PLN03117 306 ETVT 309 (355)
T ss_pred EEEE
Confidence 9875
No 22
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=5.1e-44 Score=340.95 Aligned_cols=250 Identities=15% Similarity=0.175 Sum_probs=189.3
Q ss_pred EECCeeecCCCCCccCccccC---cCeeEEEEEEE---cCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020676 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (323)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~---~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~ 81 (323)
|+||+++ |.+++.+++.||+ |||+|||+|++ +|...+|+|++|++||.+||+.|+|+.
T Consensus 1 ~~nG~~~-~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~--------------- 64 (313)
T TIGR01123 1 WHNGRLT-PYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPE--------------- 64 (313)
T ss_pred CCCCEEE-ECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCC---------------
Confidence 6899999 9999999999986 99999999999 772126788999999999999999952
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCC
Q 020676 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (323)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (323)
.+.+.|++.++++++.+-....+ ......+++|++|+++.+.++ +.+. ..+.+++.+.|++
T Consensus 65 -------~~~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~ir~~v~~~~~~~g------~~~~-~~~~~~i~~~~~~ 125 (313)
T TIGR01123 65 -------LPDELFLEALRQLVKANKDWVPP-----YGSGASLYLRPFVIGTEPNLG------VRPA-PEYLFYVFASPVG 125 (313)
T ss_pred -------CCHHHHHHHHHHHHHHccccCCC-----CCCCCcEEEEeEEEecCCccc------cCCC-CccEEEEEEEEch
Confidence 27888999999998742100000 011346889999998876543 2322 2467777777765
Q ss_pred CccccccCCCceEEE-eccccccccccccccccc----chHHH--hhCCCCCCeEEEec-CC-CeEEecCcceEEEEEc-
Q 020676 162 PFVFGVEGTGARLAL-VGRGRDVAEAKYSDWVRL----RKPLE--KLRPPSVTELLLSN-DG-DQLLEGSITNFFVVCR- 231 (323)
Q Consensus 162 ~~~~~~~~~g~~l~~-~~~~r~~~~~k~~~~~~~----~~~l~--~a~~~g~de~lL~~-~g-g~v~Eg~~sNlF~v~~- 231 (323)
+.... ..+++++.+ ....|..+.. ....|+. .++++ +|+++|+||+||.| +| |+|+|++++|||++++
T Consensus 126 ~~~~~-~~~~~~~~~~~~~~r~~~~~-l~~~K~~~nyl~~vla~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~ 203 (313)
T TIGR01123 126 AYFKG-GLAPVSIFVTTEYDRAAPGG-TGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGD 203 (313)
T ss_pred hhccc-cccceeEEecccceecCCCC-CccceeccccHHHHHHHHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcC
Confidence 32211 012335444 3344544431 2344442 24444 68899999997655 44 2499999999999986
Q ss_pred CCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhc----ceeEEecCccce
Q 020676 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELW----KEAFITSKYSSS 307 (323)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~a----dEvFltns~~gv 307 (323)
|+ |+|||++++||+||||+.||++|+++|++|+|++++++||.+| ||+|+|||++||
T Consensus 204 g~-------------------l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v~e~~i~~~~l~~A~~~~devfltnS~~gi 264 (313)
T TIGR01123 204 GE-------------------LVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAVI 264 (313)
T ss_pred CE-------------------EEeCCCCCCCCcchHHHHHHHHHHHcCCeEEEEecCHHHHHHHHhcCCEEEEccCceEE
Confidence 56 9999999999999999999999999999999999999999999 999999999999
Q ss_pred EEEEEe
Q 020676 308 FDLIAQ 313 (323)
Q Consensus 308 ~pV~~~ 313 (323)
+||.+.
T Consensus 265 ~PV~~i 270 (313)
T TIGR01123 265 TPVGEI 270 (313)
T ss_pred EEEEEE
Confidence 999987
No 23
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=1.8e-43 Score=346.74 Aligned_cols=250 Identities=17% Similarity=0.170 Sum_probs=198.6
Q ss_pred EEECCeeecCCCCCccCccccC---cCeeEEEEEEEc---CCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCC
Q 020676 7 VFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (323)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~---g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~ 80 (323)
-|.||+++ |.+++.+++.|++ |||+|||||+++ |+.++|++++|++||.+||++|+|+.|
T Consensus 95 ~w~ng~iv-p~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~RL~~SA~rL~lp~~------------- 160 (403)
T PLN02782 95 EFSKGELQ-RFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAP------------- 160 (403)
T ss_pred cEeCCEEE-ECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCcCCC-------------
Confidence 48999999 9999999999865 999999999984 433479999999999999999999532
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecC
Q 020676 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (323)
+.++|.++|.++++.+ ..|+| .......|||++++++.+.+| +.+. ..+.+++.+.|.
T Consensus 161 ---------~~e~l~~~i~~lv~~n-~~~vP-----~~~~~~lyiRp~v~g~~~~lG------~~~~-~~~~~~i~~~p~ 218 (403)
T PLN02782 161 ---------TVEQFVEAVKETVLAN-KRWVP-----PPGKGSLYIRPLLMGSGAVLG------LAPA-PEYTFLIYVSPV 218 (403)
T ss_pred ---------CHHHHHHHHHHHHHhc-cccCC-----CCCCccEEEEEEEEecCCCcC------cCCC-CCcEEEEEEEEC
Confidence 6889999999999853 34554 223457899999998765543 3322 356778888887
Q ss_pred CCccccccCCCceEEEec-ccccccccccccccccch------HHHhhCCCCCCeEEEec--CCCeEEecCcceEEEEEc
Q 020676 161 VPFVFGVEGTGARLALVG-RGRDVAEAKYSDWVRLRK------PLEKLRPPSVTELLLSN--DGDQLLEGSITNFFVVCR 231 (323)
Q Consensus 161 ~~~~~~~~~~g~~l~~~~-~~r~~~~~k~~~~~~~~~------~l~~a~~~g~de~lL~~--~gg~v~Eg~~sNlF~v~~ 231 (323)
+++... ..+++++.+.. ..|..|.. ..+.|...+ ...+|+++|++|+|+.+ .+|+|+|++++|||+|++
T Consensus 219 ~~~~~~-g~~~v~l~v~~~~~Ra~p~g-~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~ 296 (403)
T PLN02782 219 GNYFKE-GVAPINLIVENEFHRATPGG-TGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKD 296 (403)
T ss_pred cccccc-CCccEEEEEeCceeecCCCC-CcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEEEC
Confidence 653211 12366777764 66766533 234444421 23368899999996544 245999999999999998
Q ss_pred CCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEE
Q 020676 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLI 311 (323)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~ 311 (323)
++ |+||+++.+|||||||+.||++|+++|++|+|+.++++||.+|||||+|||+.+|+||.
T Consensus 297 ~~-------------------l~TP~l~~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~ 357 (403)
T PLN02782 297 NV-------------------ISTPAIKGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVG 357 (403)
T ss_pred CE-------------------EEcCCCcCCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcceEEEEE
Confidence 87 99999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 020676 312 AQ 313 (323)
Q Consensus 312 ~~ 313 (323)
++
T Consensus 358 ~I 359 (403)
T PLN02782 358 SI 359 (403)
T ss_pred EE
Confidence 87
No 24
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=2e-42 Score=338.00 Aligned_cols=246 Identities=19% Similarity=0.188 Sum_probs=195.9
Q ss_pred EEECCeeecCCCCCccCccccC---cCeeEEEEEEE---cCCccc--cCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCC
Q 020676 7 VFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCL--LFWERHLRRLASSARILYNSSPNLLFKSPTPSG 78 (323)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~---~g~~~~--~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~ 78 (323)
.|.||+++ |.+++.+++.|++ |||+|||||++ +| ++ |++++|++||.+||++|+|+.|
T Consensus 81 ~w~~g~iv-p~~~~~i~~~drgl~YGdgvFEglkayr~~~G--~i~lfr~~~h~~RL~~SA~rL~lp~~----------- 146 (388)
T PLN02259 81 EFTQGELS-PYGNIQLSPSAGVLNYGQAIYEGTKAYRKENG--KLLLFRPDHNAIRMKLGAERMLMPSP----------- 146 (388)
T ss_pred eEECCEEe-EchhCeeCchhhHHHhhhhhhhcEEEEECCCC--eEeecCcHHHHHHHHHhHHHhCCCCc-----------
Confidence 69999999 9999999999865 99999999999 67 55 7899999999999999999532
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEe
Q 020676 79 LEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFS 158 (323)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~ 158 (323)
+.+.|.+.|.++++.+ ..|+| .......|||+++.++.+.+ |+.+. ..+.+++.+.
T Consensus 147 -----------~~e~~~~~i~~lv~~n-~~~vp-----~~~~~~lyiRp~v~g~~~~l------G~~p~-~~~~~~i~~~ 202 (388)
T PLN02259 147 -----------SVDQFVNAVKQTALAN-KRWVP-----PAGKGTLYIRPLLMGSGPIL------GLGPA-PEYTFIVYAS 202 (388)
T ss_pred -----------CHHHHHHHHHHHHHhc-cccCC-----CCCCceEEEEEEEEecCCcc------CcCCC-CCcEEEEEEE
Confidence 6889999999999853 34444 22345789999888665433 33322 4567888888
Q ss_pred cCCCccccccCCC---ceEEEe-ccccccccccccccccc-c---hH--HHhhCCCCCCeEEEecC--CCeEEecCcceE
Q 020676 159 GYVPFVFGVEGTG---ARLALV-GRGRDVAEAKYSDWVRL-R---KP--LEKLRPPSVTELLLSND--GDQLLEGSITNF 226 (323)
Q Consensus 159 ~~~~~~~~~~~~g---~~l~~~-~~~r~~~~~k~~~~~~~-~---~~--l~~a~~~g~de~lL~~~--gg~v~Eg~~sNl 226 (323)
|+++.. .+| +++.+. ...|..|... ...|.. + .. ..+|+++||+|+|+.+. +|+|+|++++||
T Consensus 203 p~~~~~----~~g~~~i~l~v~~~~~Ra~p~~~-g~~K~~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNl 277 (388)
T PLN02259 203 PVGNYF----KEGMAALNLYVEEEYVRAAPGGA-GGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNV 277 (388)
T ss_pred echhhh----hcCcceEEEEeecceeccCCCCC-cccchhhhHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEE
Confidence 876542 234 345544 4667665432 344443 2 22 34688999999965543 559999999999
Q ss_pred EEEEcCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccc
Q 020676 227 FVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSS 306 (323)
Q Consensus 227 F~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~g 306 (323)
|++++++ |+|||++++|||||||+.||++|++.|++|+|++++++||.+|||+|+|||+.+
T Consensus 278 F~v~~~~-------------------l~TP~l~~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~ 338 (388)
T PLN02259 278 FVVKGRT-------------------ISTPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVV 338 (388)
T ss_pred EEEECCE-------------------EEcCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEcCCcce
Confidence 9999887 999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEec
Q 020676 307 SFDLIAQK 314 (323)
Q Consensus 307 v~pV~~~~ 314 (323)
|+||.+..
T Consensus 339 V~PV~~I~ 346 (388)
T PLN02259 339 VAPVGTIT 346 (388)
T ss_pred EEEEEEEe
Confidence 99999875
No 25
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.9e-41 Score=319.22 Aligned_cols=247 Identities=23% Similarity=0.294 Sum_probs=196.6
Q ss_pred cEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020676 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (323)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~ 81 (323)
.+.|+||+++ +.+++.++++|++ |+|+|||+|+++| ++|+|++|++||++||+.|+|+.|
T Consensus 2 ~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~vFE~~r~~~g--~~~~l~~H~~RL~~Sa~~l~~~~~-------------- 64 (284)
T COG0115 2 GKIWVNGELV-PEEDAKLSVLDRGLHYGDGVFETLRAYNG--KLFRLDEHLARLKRSAKRLGLPRP-------------- 64 (284)
T ss_pred CeEeECCEEc-cCcccccCcccceeccccceeEEEEEeCC--cccChHHHHHHHHHHHHHhCCCCC--------------
Confidence 4689999999 9999999999854 9999999999998 899999999999999999999654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCC-CCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecC
Q 020676 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRD-GEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (323)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~-~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (323)
.+.+++......+++. ++ ....|+|+++.++.+.++ ..+ +..+.+.+.+.|+
T Consensus 65 -------~~~~~~~~~~~~~~~~-------------~~~~~~~y~r~~~~~~~~~~~------~~~-~~~~~~~v~~~~~ 117 (284)
T COG0115 65 -------ESEEEIELLIQLLLAK-------------NNLVPGLYIRPLVRGGGGGLG------VRD-ATEPTLIVAASPV 117 (284)
T ss_pred -------CCHHHHHHHHHHHHHh-------------hCCCCceEEEEEEEeecCCCC------cCC-CCccEEEEEEEec
Confidence 4777777777766652 22 234888898887766542 333 4456777888888
Q ss_pred CCcccccc-CCCceEEEec-ccccccc----cccccccccchHHHhhCCCCCCeEEEecCCCeEEecCcceEEEEE-cCC
Q 020676 161 VPFVFGVE-GTGARLALVG-RGRDVAE----AKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVC-RKD 233 (323)
Q Consensus 161 ~~~~~~~~-~~g~~l~~~~-~~r~~~~----~k~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~-~~~ 233 (323)
++...... ..++.+.++. .++..+. .|..++.....+..+|+++|++|+|+.+.+|+|+||+++|+|+++ +|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~~~y~~~~~a~~~A~~~G~~eal~~~~~G~V~Eg~~sNvf~v~~dg~ 197 (284)
T COG0115 118 GAYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLLDEDGYVTEGAGSNVFFVKGDGV 197 (284)
T ss_pred ccccCcccccCCeEEEEeehhhccCCCcchhhhhcccHHHHHHHHHHHHCCCCEEEEecCCCeEEEcCcceEEEEEECCE
Confidence 87653321 2465555554 3333332 233333333334457899999999887755599999999999999 666
Q ss_pred CCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEe
Q 020676 234 NSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQ 313 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~ 313 (323)
++|||++.++||||||+.||++|+++|++|+|++++.+||..|||+|+|||+++|+||...
T Consensus 198 -------------------~~TP~~~~~iL~GitR~~li~la~~~G~~v~E~~i~~~~l~~adevf~t~t~~~v~PV~~i 258 (284)
T COG0115 198 -------------------LVTPPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLI 258 (284)
T ss_pred -------------------EECCCCCCCccccHHHHHHHHHHHHcCceEEEeecCHHHHhhCCEEEEEccceEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 020676 314 K 314 (323)
Q Consensus 314 ~ 314 (323)
+
T Consensus 259 ~ 259 (284)
T COG0115 259 D 259 (284)
T ss_pred C
Confidence 3
No 26
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=3.8e-41 Score=328.41 Aligned_cols=251 Identities=17% Similarity=0.160 Sum_probs=195.8
Q ss_pred EEECCeeecCCCCCccCccc---cCcCeeEEEEEEEc---CCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCC
Q 020676 7 VFSNGVVSQASDTPSVSTFL---QERRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (323)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~---~~G~GvFEt~r~~~---g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~ 80 (323)
-|.+++++ |....++++.+ ++|||+|||||+++ |+..+|+++.|++||.+||++|+|+.|
T Consensus 77 ~w~~~~i~-p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~------------- 142 (384)
T PLN02883 77 NFEQGYLS-RYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSP------------- 142 (384)
T ss_pred cccCCeEe-eCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCc-------------
Confidence 57889999 88888888877 45999999999994 422336888999999999999999532
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecC
Q 020676 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (323)
+.+.|.+.|.++++.+ ..|+| ..+....|||++++++.+.+ |+.+ ...+.++|.+.|+
T Consensus 143 ---------~~e~~~~~i~~lv~~n-~~wvp-----~~~~~~lYIRp~v~~~~~~l------G~~~-~~~~~~~i~~~p~ 200 (384)
T PLN02883 143 ---------SVHQFIEGVKQTVLAN-RRWVP-----PPGKGSLYLRPLLFGSGASL------GVAA-APEYTFLVFGSPV 200 (384)
T ss_pred ---------CHHHHHHHHHHHHHhc-cccCC-----CCCCceEEEEEEEEecCCcc------CCCC-CCCeEEEEEEEec
Confidence 7899999999999853 34554 22345789999999887654 3332 2457888888888
Q ss_pred CCccccccCCCceEEEecc-cccccccccccccccc----hH--HHhhCCCCCCeEEE-ecC-CCeEEecCcceEEEEEc
Q 020676 161 VPFVFGVEGTGARLALVGR-GRDVAEAKYSDWVRLR----KP--LEKLRPPSVTELLL-SND-GDQLLEGSITNFFVVCR 231 (323)
Q Consensus 161 ~~~~~~~~~~g~~l~~~~~-~r~~~~~k~~~~~~~~----~~--l~~a~~~g~de~lL-~~~-gg~v~Eg~~sNlF~v~~ 231 (323)
+++... .-+++++.+... +|..+.. ....|... .. ..+|+++||||+|+ +.+ +++|+|++++|||+|++
T Consensus 201 ~~y~~~-g~~~v~l~~~~~~~Ra~~~g-~g~~K~~~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~ 278 (384)
T PLN02883 201 QNYFKE-GTAALNLYVEEVIPRAYLGG-TGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKG 278 (384)
T ss_pred cccccc-CcceEEEEECccccccCCCC-CcccchhhhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEEC
Confidence 654311 113566666654 5655432 23344442 22 24788999999965 434 45999999999999998
Q ss_pred CCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEE
Q 020676 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLI 311 (323)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~ 311 (323)
++ |+|||++++|||||||+.||++|+++|++|+|++++++||.+|||+|+|||+.+|+||.
T Consensus 279 ~~-------------------l~TP~l~~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~ 339 (384)
T PLN02883 279 NI-------------------IVTPATSGTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVG 339 (384)
T ss_pred CE-------------------EEeCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeeccChhheEEEE
Confidence 87 99999999999999999999999999999999999999999999999999999999999
Q ss_pred Eec
Q 020676 312 AQK 314 (323)
Q Consensus 312 ~~~ 314 (323)
+..
T Consensus 340 ~I~ 342 (384)
T PLN02883 340 SIT 342 (384)
T ss_pred EEe
Confidence 875
No 27
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=281.00 Aligned_cols=198 Identities=22% Similarity=0.250 Sum_probs=154.9
Q ss_pred CeeEEEEEEE-cCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhc
Q 020676 30 RGAYTTTRTH-NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNE 108 (323)
Q Consensus 30 ~GvFEt~r~~-~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~ 108 (323)
.++|||||++ +| ++++|++|++||.+||+.|+++ ++.+.|++.+.++++
T Consensus 4 ~~lfETi~~~~~G--~~~~l~~Hl~RL~~sa~~l~~~-----------------------~~~~~l~~~l~~~~~----- 53 (209)
T PRK07546 4 FELIETLRWEPGA--GFPRLDRHLARLERSARALGFP-----------------------CDPAAVRAKLAEAVA----- 53 (209)
T ss_pred ccEEEEEEEeCCC--CcccHHHHHHHHHHHHHHhCCC-----------------------CCHHHHHHHHHHHhh-----
Confidence 4899999999 98 8999999999999999999984 245677777777775
Q ss_pred cchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCccccccCCCceEEEeccccccccccc
Q 020676 109 ALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKY 188 (323)
Q Consensus 109 ~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~r~~~~~k~ 188 (323)
.+ ...++||+++++++ .+.+...|+++... ..+.++.++..++..+.. .
T Consensus 54 --------~~-~~~~~vrl~~~~~g------------------~~~i~~~p~~~~~~---~~~~~l~~~~~~~~~~~~-~ 102 (209)
T PRK07546 54 --------GA-QGPLRLRLTLARDG------------------RLTVETAPLPPLPP---DTVWRVAIARTRLDSADP-L 102 (209)
T ss_pred --------cc-CCCeEEEEEEcCCC------------------CEEEEEecCCCCCC---CCcEEEEEcCcccCCCCc-c
Confidence 22 35688999988753 13456677754321 235566666655543211 1
Q ss_pred ccccccc---hHH--HhhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCccEEE-ecCCCCCC
Q 020676 189 SDWVRLR---KPL--EKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQ-TAPISDGV 262 (323)
Q Consensus 189 ~~~~~~~---~~l--~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~~~~~~~~~~~~~l~-TPpl~~gi 262 (323)
..+|+.+ +++ ++|+++|+||+||.|++|+|+||+++|+|++++++ |+ |||++.|+
T Consensus 103 ~~~Kt~nr~~~v~a~~~a~~~g~de~l~l~~~G~v~E~s~~Ni~~~~~~~-------------------~~~TP~~~~g~ 163 (209)
T PRK07546 103 LRYKTTRRAAYDAARAELPPAEADEVILLNERGEVCEGTITNVFLDRGGG-------------------MLTTPPLSCGL 163 (209)
T ss_pred hhcccCChHHHHHHHHHHhhCCCCEEEEECCCCcEEEcCceeEEEEECCE-------------------EEECCCCcCCC
Confidence 2344432 333 46778999999877655599999999999999998 99 99999999
Q ss_pred CccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEE
Q 020676 263 LPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIA 312 (323)
Q Consensus 263 L~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~ 312 (323)
|+||||+.+++. ++|+|+.++++||.+|||+|+|||++||+||..
T Consensus 164 L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~ 208 (209)
T PRK07546 164 LPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAEL 208 (209)
T ss_pred CccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEEE
Confidence 999999999983 689999999999999999999999999999974
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=4.2e-36 Score=272.83 Aligned_cols=211 Identities=25% Similarity=0.286 Sum_probs=146.7
Q ss_pred cCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCC-CCceE
Q 020676 46 LFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRD-GEELA 124 (323)
Q Consensus 46 ~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~-~~~~~ 124 (323)
|+|++|++||.+||+.+ +.. +++.+.|++.+.++++. ++ ..+++
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~---------------------~~~~~~l~~~i~~~~~~-------------~~~~~~~~ 45 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGL---------------------PFSREELREIIQELLEA-------------NPDQGEGY 45 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTH---------------------SSHHHHHHHHHHHHHHH-------------TTSSSSEE
T ss_pred CCHHHHHHHHHHHHHHH-ccC---------------------CcCHHHHHHHHHHHHHH-------------cCCCCCcE
Confidence 78999999999999999 422 35889999999999973 33 56779
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCccccccCCCceEEEeccccc--ccccccccccccch-HHHhh
Q 020676 125 VTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRD--VAEAKYSDWVRLRK-PLEKL 201 (323)
Q Consensus 125 vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~r~--~~~~k~~~~~~~~~-~l~~a 201 (323)
||++++++.+..+.. .+....+.......+............+.+.....++. .+..|+.++..... .+..|
T Consensus 46 ir~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~~~~~~~~~~~~a 120 (231)
T PF01063_consen 46 IRITVTRGGGPLGGS-----PPENSAPPPFSIAPPRRPPPPLVGSVGVRRASPPLPRPNPLPRHKTTNRLANVLAALRAA 120 (231)
T ss_dssp EEEEEEETSSSSSSS-----ECSEEEEEEEEEETCHHHHEEEEEECSEECETTTSE-TTTSTTS-BSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcCcc-----CccccccccccccccccCCcceeeeeeEEeccccccccCCCCCeeECCcchhhHHHHHHH
Confidence 999999987654222 11111121121111111111100011111111112222 33445444433333 34456
Q ss_pred CCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCc
Q 020676 202 RPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIP 281 (323)
Q Consensus 202 ~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~ 281 (323)
+++|+||+||.+++|+|+||+++|||++++++ |+|||+++|+|+||||+.|+++++++|++
T Consensus 121 ~~~g~de~ll~d~~G~v~E~~~sNif~~~~~~-------------------~~TP~~~~giL~Gitr~~ll~~~~~~g~~ 181 (231)
T PF01063_consen 121 REKGADEALLLDEDGNVTEGSTSNIFFVKDGT-------------------LYTPPLDSGILPGITRQLLLELAKELGIP 181 (231)
T ss_dssp HHTTSSEEEEEETTSBEEEESSSEEEEEETTE-------------------EEEESGSSSSB--HHHHHHHHHHHHTTSE
T ss_pred HhcCcchhheecCCCCcCCCCCcccccccCCE-------------------EEcCChhhhhccHHHHHHHHHHHHhCCCC
Confidence 67899999766655599999999999999998 99999999999999999999999999999
Q ss_pred EEEEecCHHHHhhcceeEEecCccceEEEEEech
Q 020676 282 IRELASSWSQHELWKEAFITSKYSSSFDLIAQKR 315 (323)
Q Consensus 282 v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~~ 315 (323)
|+|+.++++||..|||+|+|||++||+||.+.+.
T Consensus 182 v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~~ 215 (231)
T PF01063_consen 182 VEERPITLDDLQQADEVFLTNSLRGIRPVKSIDG 215 (231)
T ss_dssp EEEE-BBHHHHHTHSEEEEEETTTEEEEEEEETT
T ss_pred cEEEEeCHHHhhhhhheEEecchhhEEEEEEECC
Confidence 9999999999999999999999999999998543
No 29
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-33 Score=263.74 Aligned_cols=250 Identities=20% Similarity=0.213 Sum_probs=197.4
Q ss_pred EECCeeecCCCCCccCcc---ccCcCeeEEEEEEEcC---CccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020676 8 FSNGVVSQASDTPSVSTF---LQERRGAYTTTRTHNN---GSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (323)
Q Consensus 8 ~~nG~~~~~~~~~~is~~---~~~G~GvFEt~r~~~g---~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~ 81 (323)
|.-|++. |...-++++. +|+|+|+||.++++++ ..++|+.+.|+.|+.+||.++.|+.|
T Consensus 70 w~~~~I~-p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~~sA~r~~lP~p-------------- 134 (379)
T KOG0975|consen 70 WSQGEIS-PFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRMLRSAERACLPSP-------------- 134 (379)
T ss_pred cCCCCcc-CcCCEeeChhhhceecchhhccccccccCCCCeEEEecchhhHHHHHhhhhhccCCCC--------------
Confidence 4555555 5554455533 4779999999999976 35689999999999999999999533
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCC
Q 020676 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (323)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (323)
+.+++.+.|.+++.. -++|+| ..+....|||+++.+++.. +|.. .++++++++..+|.-
T Consensus 135 --------~~~e~ie~i~~lv~~-~~~wVP-----~~~~~SLyirp~l~Gt~~~------Lgv~-~~~e~~l~vi~spvg 193 (379)
T KOG0975|consen 135 --------DVEEFIEAIKQLVLA-DKEWVP-----PPGKGSLYIRPLLIGTDPV------LGVS-PAPEATLFVIVSPVG 193 (379)
T ss_pred --------CHHHHHHHHHHHHHh-cCcccC-----CCCCceEEEeeeeccCCcc------cccc-cCCcceEEEEEcccc
Confidence 778888899999875 367877 5667889999998877643 3434 456788888888887
Q ss_pred CccccccCCCceEEEec-ccccccccccccccccc------hHHHhhCCCCCCeE-EEecCCCeEEecCcceEEEEEcCC
Q 020676 162 PFVFGVEGTGARLALVG-RGRDVAEAKYSDWVRLR------KPLEKLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKD 233 (323)
Q Consensus 162 ~~~~~~~~~g~~l~~~~-~~r~~~~~k~~~~~~~~------~~l~~a~~~g~de~-lL~~~gg~v~Eg~~sNlF~v~~~~ 233 (323)
++... ..+|+.|.+.. ..|..|..-. ..+... .++.+|+.+||.++ ||+.++++|+|..++|+|+|+++.
T Consensus 194 ~yf~~-g~~~v~L~v~~~~~Ra~pgg~g-~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d~~~ItEv~tmNiF~v~~n~ 271 (379)
T KOG0975|consen 194 PYFKS-GFKGVNLLVDPEFVRAWPGGTG-GVKLGGNYAPNVLAQKEAKSKGASDVLWLDGDGGYITEVGTMNIFMVKKNE 271 (379)
T ss_pred hhccc-cccceEEEEecceeecCCCCCC-ceeeccccchHHHHHHHHHhcCcceeEEEecCCCceeeccceeEEEEEcCc
Confidence 65421 13567776554 5677775432 333332 23447999999999 678777799999999999999886
Q ss_pred CCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCC-CcEEEEecCHHHHhhcceeEEecCccceEEEEE
Q 020676 234 NSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKG-IPIRELASSWSQHELWKEAFITSKYSSSFDLIA 312 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~g-i~v~e~~~~~~dL~~adEvFltns~~gv~pV~~ 312 (323)
.+|+|||++.-|||||||+.|+++|++.| +.|+||.++++|+.+|+|+|.|+|...|-||..
T Consensus 272 -----------------~elvTPp~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~ 334 (379)
T KOG0975|consen 272 -----------------DELVTPPLDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVFCTGTAAVVSPVGS 334 (379)
T ss_pred -----------------eeEecCCCCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhhcccceeeeccccc
Confidence 26999999988999999999999999999 999999999999999999999999998888865
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.97 E-value=3.9e-30 Score=228.74 Aligned_cols=182 Identities=14% Similarity=0.091 Sum_probs=132.7
Q ss_pred CeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhcc
Q 020676 30 RGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEA 109 (323)
Q Consensus 30 ~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~ 109 (323)
.++|||||+++| ++++|++|++||.+||+.+++.. .+++.+.+.+.+.++
T Consensus 3 ~~l~ETir~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~--------------------~~~~~~~~~~~~~~~-------- 52 (187)
T PRK07101 3 FPLFETIAIEDG--EIQNLSYHQQRYERTLAEFYGKE--------------------APFDLAEIIQPPTEL-------- 52 (187)
T ss_pred CcceEEEeeeCC--eeccHHHHHHHHHHHHHHHcccC--------------------CcccHHHHhhchhhh--------
Confidence 379999999998 89999999999999999998843 135677666554322
Q ss_pred chhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCccccccCCCceEEEecccccccccccc
Q 020676 110 LPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYS 189 (323)
Q Consensus 110 ~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~r~~~~~k~~ 189 (323)
.++++|+.|+.+.+. +.+...|+++.. ..++++..+... ..
T Consensus 53 -----------~~~~~r~rl~~~~g~-----------------~~~~~~~~~~~~----~~~~~~~~~~~~-------~~ 93 (187)
T PRK07101 53 -----------QEGLVRCRIDYNAEI-----------------YQVQYFPYQRRP----IRSFQPVYCDDI-------DY 93 (187)
T ss_pred -----------cCCCEEEEEEecCCc-----------------EEEEEEcCCCCC----cCceEEEecCCc-------cc
Confidence 123355555554432 123345554432 235655433321 12
Q ss_pred cccccc-hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccH
Q 020676 190 DWVRLR-KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGV 266 (323)
Q Consensus 190 ~~~~~~-~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~Gi 266 (323)
.+|+.. +.+. .|+..|+||+|+.++| +|+||+++|||++++++ |+||| .|+|+||
T Consensus 94 ~~Kt~~r~~~~~~~a~~~g~de~l~~~~G-~v~E~~~sNi~~~~~~~-------------------~~TP~--~~~L~Gi 151 (187)
T PRK07101 94 SLKYTDRSALNELFAQKGECDEIIIIKNG-LVTDTSIGNLAFFDGKQ-------------------WFTPK--KPLLKGT 151 (187)
T ss_pred ccccCCHHHHHHHHHHhCCCCEEEEEcCC-EEEEccceEEEEEECCE-------------------EEcCC--CCCccHH
Confidence 344442 3343 3456899999887766 99999999999999988 99998 4899999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccce
Q 020676 267 IRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSS 307 (323)
Q Consensus 267 tR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv 307 (323)
||+.+++ .| +|+|+.++++||.+|||+|+|||++|+
T Consensus 152 ~R~~ll~----~~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 152 QRARLLD----EG-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred HHHHHHc----cC-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 9999997 35 899999999999999999999999984
No 31
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=40.15 E-value=48 Score=25.55 Aligned_cols=55 Identities=13% Similarity=0.223 Sum_probs=37.4
Q ss_pred CCCCccHHHHHHHH-HHHhCCCcEE---------EEecCHHHHhhcceeEEecCccceEEEEEechhhh
Q 020676 260 DGVLPGVIRQLVIE-VCRSKGIPIR---------ELASSWSQHELWKEAFITSKYSSSFDLIAQKRFAY 318 (323)
Q Consensus 260 ~giL~GitR~~vl~-la~~~gi~v~---------e~~~~~~dL~~adEvFltns~~gv~pV~~~~~~~~ 318 (323)
.|+-...+-...|+ .++++|+.+. +..++.+++..||-+++.+.. ++....||..
T Consensus 8 ~G~Aht~lAae~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~----~~~~~~rf~g 72 (85)
T TIGR00829 8 TGIAHTFMAAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR----EIDLSRRFAG 72 (85)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC----CCchhhhcCC
Confidence 34444444444444 6778999887 456888999999999998876 3444445653
No 32
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=33.84 E-value=58 Score=25.18 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCcEE---------EEecCHHHHhhcceeEEecCc
Q 020676 269 QLVIEVCRSKGIPIR---------ELASSWSQHELWKEAFITSKY 304 (323)
Q Consensus 269 ~~vl~la~~~gi~v~---------e~~~~~~dL~~adEvFltns~ 304 (323)
+.+-+.|++.|+.+. +..++.+++..||-+++.+..
T Consensus 4 eaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 4 EALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 344567888998887 346888999999999998876
No 33
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=32.32 E-value=91 Score=24.35 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=32.9
Q ss_pred CCCCccHHHHHHH-HHHHhCCCcEE---------EEecCHHHHhhcceeEEecCcc
Q 020676 260 DGVLPGVIRQLVI-EVCRSKGIPIR---------ELASSWSQHELWKEAFITSKYS 305 (323)
Q Consensus 260 ~giL~GitR~~vl-~la~~~gi~v~---------e~~~~~~dL~~adEvFltns~~ 305 (323)
.|+-.+++-...| +.|++.|+.+. +..++.+++..||-+++++...
T Consensus 9 ~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 9 TGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred CchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC
Confidence 3444444444444 47888999888 4467779999999999998864
No 34
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=27.79 E-value=44 Score=26.35 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEecCHHHHhhc
Q 020676 264 PGVIRQLVIEVCRSKGIPIRELASSWSQHELW 295 (323)
Q Consensus 264 ~GitR~~vl~la~~~gi~v~e~~~~~~dL~~a 295 (323)
.|=.-+.||+.|++.|+|++|.+.-.+.|..-
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~l 61 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPLLVELLLKL 61 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHHHHHHHHhc
Confidence 57788999999999999999998877766553
No 35
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=26.75 E-value=1.9e+02 Score=23.27 Aligned_cols=54 Identities=9% Similarity=-0.047 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccce-EEEEEechhhhhhhc
Q 020676 264 PGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSS-FDLIAQKRFAYLLQM 322 (323)
Q Consensus 264 ~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv-~pV~~~~~~~~~~~~ 322 (323)
+.-|++.+...|+..++|+..-..+-+||..|= +--..+ +=.+....|+..|.+
T Consensus 52 ~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~-----Gk~~r~svvaI~D~G~a~~l~~ 106 (108)
T PTZ00106 52 PPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTAC-----GRHFRVSVMSITDAGDSDILRA 106 (108)
T ss_pred CHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHh-----CCccCeEEEEEeCcchHHHHhh
Confidence 678999999999999999987777899998762 222122 223356778877764
No 36
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.09 E-value=1.2e+02 Score=23.08 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCHHHHhhc
Q 020676 266 VIRQLVIEVCRSKGIPIRELASSWSQHELW 295 (323)
Q Consensus 266 itR~~vl~la~~~gi~v~e~~~~~~dL~~a 295 (323)
-+++.+..+|++.++|+..-. +-.||..|
T Consensus 40 ~~~~~i~~~c~~~~Vp~~~~~-s~~eLG~a 68 (82)
T PRK13602 40 RLTEKVEALANEKGVPVSKVD-SMKKLGKA 68 (82)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CHHHHHHH
Confidence 599999999999999998877 88999876
No 37
>PRK06683 hypothetical protein; Provisional
Probab=23.01 E-value=1.3e+02 Score=22.94 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEecCHHHHhhc
Q 020676 264 PGVIRQLVIEVCRSKGIPIRELASSWSQHELW 295 (323)
Q Consensus 264 ~GitR~~vl~la~~~gi~v~e~~~~~~dL~~a 295 (323)
+--+++.+.++|+..++|+..-. +..||..|
T Consensus 38 ~~~~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A 68 (82)
T PRK06683 38 DMRLTHVIIRTALQHNIPITKVE-SVRKLGKV 68 (82)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC-CHHHHHHH
Confidence 33488999999999999998888 88999876
No 38
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.97 E-value=1.7e+02 Score=24.39 Aligned_cols=34 Identities=6% Similarity=0.057 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCcEEEE---------ecCHHHHhhcceeEEecC
Q 020676 270 LVIEVCRSKGIPIREL---------ASSWSQHELWKEAFITSK 303 (323)
Q Consensus 270 ~vl~la~~~gi~v~e~---------~~~~~dL~~adEvFltns 303 (323)
.+-+.|+++|+.|..+ .++.+|+..||-|++..-
T Consensus 23 aLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD 65 (122)
T COG1445 23 ALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAAD 65 (122)
T ss_pred HHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEec
Confidence 3344688899887655 799999999999998654
No 39
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=21.58 E-value=42 Score=23.37 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=17.7
Q ss_pred CCCCccHHHHHHHHHHHhCCCcE
Q 020676 260 DGVLPGVIRQLVIEVCRSKGIPI 282 (323)
Q Consensus 260 ~giL~GitR~~vl~la~~~gi~v 282 (323)
..+|+|-.|+.|++.++.-++.|
T Consensus 17 q~VLqgksR~vIirELqrTnLdV 39 (53)
T PF11547_consen 17 QVVLQGKSRNVIIRELQRTNLDV 39 (53)
T ss_dssp HHHSTTS-HHHHHHHHHHTTT-H
T ss_pred HHHHcCCcHHHHHHHHHHhcccH
Confidence 35899999999999888877755
No 40
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=20.98 E-value=1.5e+02 Score=24.17 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCCCccHHHHHHHH-HHHhCCCcEE---------EEecCHHHHhhcceeEEecCc
Q 020676 260 DGVLPGVIRQLVIE-VCRSKGIPIR---------ELASSWSQHELWKEAFITSKY 304 (323)
Q Consensus 260 ~giL~GitR~~vl~-la~~~gi~v~---------e~~~~~~dL~~adEvFltns~ 304 (323)
.|+=...+-...|+ .|++.|+.+. +..++.+++..||-+++.+..
T Consensus 13 ~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~ 67 (114)
T PRK10427 13 SGVAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDI 67 (114)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 44444444444444 6778998887 346788999999999998776
No 41
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=20.10 E-value=93 Score=22.46 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=30.0
Q ss_pred cceEEEEEcCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCC
Q 020676 223 ITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKG 279 (323)
Q Consensus 223 ~sNlF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~g 279 (323)
-++|++|.+++ .+--.+.+=+|-|+--...-+.|.+.|
T Consensus 31 ~~~f~ivi~~q-------------------~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 31 ESHFAIVIGEQ-------------------SIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred CCcEEEEECCe-------------------EEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 46888888887 776677788899998888888887654
Done!