Query 020677
Match_columns 323
No_of_seqs 136 out of 577
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:34:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 2.7E-92 9.2E-97 685.6 21.8 321 1-321 1-323 (390)
2 2vgn_A DOM34; translation term 100.0 2.8E-86 9.5E-91 643.3 36.3 318 1-321 1-329 (386)
3 3j15_A Protein pelota; ribosom 100.0 4E-87 1.4E-91 643.2 16.7 304 1-317 1-308 (357)
4 3oby_A Protein pelota homolog; 100.0 4.6E-84 1.6E-88 619.2 27.6 293 1-319 1-295 (352)
5 3obw_A Protein pelota homolog; 100.0 4.2E-83 1.4E-87 615.3 30.8 293 1-320 21-316 (364)
6 3agj_B Protein pelota homolog; 100.0 1.8E-79 6E-84 590.6 34.9 297 1-320 3-303 (358)
7 2qi2_A Pelota, cell division p 100.0 3.4E-78 1.2E-82 578.5 22.5 290 1-317 1-293 (347)
8 3e20_C Eukaryotic peptide chai 100.0 4.5E-51 1.5E-55 401.6 -6.8 254 41-316 64-332 (441)
9 1dt9_A ERF1, protein (eukaryot 100.0 8.5E-49 2.9E-53 386.5 -4.2 271 28-316 34-327 (437)
10 3agk_A Peptide chain release f 100.0 1.2E-41 4.2E-46 329.2 16.3 220 74-314 89-324 (373)
11 3ir9_A Peptide chain release f 99.8 5E-19 1.7E-23 152.4 8.4 74 243-318 2-75 (166)
12 1x52_A Pelota homolog, CGI-17; 99.7 4.7E-18 1.6E-22 139.5 2.7 68 254-321 3-70 (124)
13 1xbi_A 50S ribosomal protein L 74.9 5.7 0.00019 31.2 5.8 40 275-315 16-55 (120)
14 3j21_Z 50S ribosomal protein L 71.0 6.3 0.00022 29.7 5.0 35 279-314 6-40 (99)
15 2lbw_A H/ACA ribonucleoprotein 67.4 8.9 0.0003 30.1 5.4 31 285-315 16-46 (121)
16 3v7q_A Probable ribosomal prot 66.8 4.7 0.00016 30.7 3.5 32 284-315 14-45 (101)
17 4a18_G RPL30; ribosome, eukary 65.7 6.8 0.00023 29.9 4.2 29 287-315 20-48 (104)
18 1w41_A 50S ribosomal protein L 65.0 7.8 0.00027 29.3 4.4 35 279-314 7-41 (101)
19 3v7e_A Ribosome-associated pro 64.7 8.8 0.0003 28.0 4.5 28 288-315 10-37 (82)
20 3on1_A BH2414 protein; structu 64.7 11 0.00038 28.5 5.3 31 285-315 14-44 (101)
21 3u5e_c L32, RP73, YL38, 60S ri 62.4 13 0.00046 28.3 5.4 31 285-315 18-48 (105)
22 3gdz_A Arginyl-tRNA synthetase 62.2 5.6 0.00019 30.7 3.2 28 185-212 59-87 (109)
23 1vq8_F 50S ribosomal protein L 62.1 14 0.00047 28.9 5.5 29 287-315 27-55 (120)
24 3iz5_f 60S ribosomal protein L 59.4 16 0.00056 28.3 5.5 31 285-315 22-52 (112)
25 3cpq_A 50S ribosomal protein L 59.0 11 0.00038 29.0 4.4 28 288-315 20-47 (110)
26 2aif_A Ribosomal protein L7A; 58.6 18 0.00061 29.0 5.7 39 276-315 29-67 (135)
27 2fc3_A 50S ribosomal protein L 58.4 15 0.00051 28.9 5.1 28 288-315 27-54 (124)
28 1rlg_A 50S ribosomal protein L 58.0 15 0.00052 28.6 5.1 28 288-315 26-53 (119)
29 2ale_A SNU13, NHP2/L7AE family 55.3 20 0.00069 28.7 5.5 36 279-315 23-58 (134)
30 3o85_A Ribosomal protein L7AE; 54.8 24 0.00082 27.7 5.8 29 287-315 29-57 (122)
31 3vi6_A 60S ribosomal protein L 53.1 12 0.0004 29.7 3.7 29 287-315 25-53 (125)
32 2xzm_U Ribosomal protein L7AE 51.1 20 0.00068 28.4 4.7 39 276-315 12-50 (126)
33 2jnb_A NHP2-like protein 1; sp 39.2 30 0.001 28.0 4.2 30 286-315 47-76 (144)
34 4dey_A Voltage-dependent L-typ 39.1 49 0.0017 30.8 6.1 90 198-300 140-248 (337)
35 3r8e_A Hypothetical sugar kina 36.0 68 0.0023 28.7 6.6 69 180-251 241-310 (321)
36 4htl_A Beta-glucoside kinase; 31.9 63 0.0021 28.7 5.5 66 180-252 218-283 (297)
37 3u5c_M 40S ribosomal protein S 31.6 51 0.0017 26.7 4.3 40 275-315 27-66 (143)
38 3mcp_A Glucokinase; structural 30.0 75 0.0026 29.5 5.8 47 180-227 240-287 (366)
39 3vgl_A Glucokinase; ROK family 29.6 1.3E+02 0.0045 26.8 7.3 71 179-252 232-304 (321)
40 2gup_A ROK family protein; sug 26.7 75 0.0026 27.8 5.0 46 180-225 208-253 (292)
41 4a17_S RPL26, 60S ribosomal pr 26.4 1.7E+02 0.0058 23.4 6.4 81 23-125 35-120 (135)
42 4db3_A Glcnac kinase, N-acetyl 24.1 1.1E+02 0.0038 27.5 5.7 69 180-252 250-318 (327)
43 3htv_A D-allose kinase, alloki 23.8 1.1E+02 0.0037 27.4 5.5 67 179-251 219-290 (310)
44 4g9s_B Inhibitor of G-type lys 23.8 1.4E+02 0.0047 22.5 5.4 39 69-112 5-44 (111)
45 2xsk_A CSGC; chaperone; 1.70A 22.3 2.3E+02 0.0079 21.6 6.1 17 96-112 50-66 (110)
46 3iz5_Y 60S ribosomal protein L 22.1 2.8E+02 0.0096 22.5 7.1 80 23-124 35-119 (150)
47 1oa8_A Ataxin-1; RNA binding, 21.0 3.1E+02 0.011 21.8 7.0 81 13-125 24-107 (133)
48 2yhw_A Bifunctional UDP-N-acet 20.7 1.4E+02 0.0049 26.7 5.8 45 180-226 265-309 (343)
49 2qm1_A Glucokinase; alpha-beta 20.7 1.8E+02 0.0061 25.6 6.4 47 180-226 243-290 (326)
50 2e2o_A Hexokinase; acetate and 20.5 1.2E+02 0.0041 26.6 5.1 45 181-225 221-265 (299)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-92 Score=685.61 Aligned_cols=321 Identities=38% Similarity=0.696 Sum_probs=276.6
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEE--EEeecCCCe
Q 020677 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKV--VDYDKEGSV 78 (323)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~E~~dDlw~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~V--vef~~~~~~ 78 (323)
|||+++++.++++|.|+|+||++||||||||||++||+|+|+|+|||++++++|+++++|++|+|+|+| ++|||++++
T Consensus 1 Mkl~~~~~~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~~ 80 (390)
T 3mca_B 1 MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAAQ 80 (390)
T ss_dssp -------CBCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EECCCEEECTTSSC
T ss_pred CccccccccCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEEEEEEEecCCCCE
Confidence 999999999999999999999999999999999999999999999999988889889999999999999 999999999
Q ss_pred EEEEEEEeecCcccccccEEEEEEccCceeEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEE
Q 020677 79 LRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITR 158 (323)
Q Consensus 79 Lri~G~i~~~~e~v~~G~~HTi~i~~~~~~~i~K~~wd~~~~e~L~~a~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~ 158 (323)
|||+|+|+++|+++++|+|||++|+||+||+++|++||+|++++|++|++++.++++++|+||+|.|+||++++++++++
T Consensus 81 Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~ 160 (390)
T 3mca_B 81 LHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILR 160 (390)
T ss_dssp EEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEE
T ss_pred EEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEEEEecCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCcE
Q 020677 159 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 238 (323)
Q Consensus 159 ~~i~~~ip~K~~~~~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~~~~~~~~~~~~ki 238 (323)
+++++++|+||++|++++++++++||++|++++.+++++.++++||||||||+|++|++||.+++.+..++.|+.+++||
T Consensus 161 ~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~~k~ 240 (390)
T 3mca_B 161 QRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKF 240 (390)
T ss_dssp EEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHGGGE
T ss_pred EEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhcCeE
Confidence 99999999999886558999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCCccc
Q 020677 239 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 318 (323)
Q Consensus 239 ~~~~~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~ 318 (323)
+++|+|+||++||+|+|++|+++++|+++++++|.++|++|+++|++|+++||||+++|.+|+++|||+||||+|++||+
T Consensus 241 ~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~ 320 (390)
T 3mca_B 241 VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRS 320 (390)
T ss_dssp EEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCC
T ss_pred EEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 020677 319 VCS 321 (323)
Q Consensus 319 ~d~ 321 (323)
+|+
T Consensus 321 ~d~ 323 (390)
T 3mca_B 321 SDI 323 (390)
T ss_dssp SCH
T ss_pred CCh
Confidence 874
No 2
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=2.8e-86 Score=643.25 Aligned_cols=318 Identities=26% Similarity=0.466 Sum_probs=288.1
Q ss_pred Ceeeeee---cccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEE--EEeecC
Q 020677 1 MKILRRN---LVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKV--VDYDKE 75 (323)
Q Consensus 1 Mki~~~~---~~~~~~g~v~l~~E~~dDlw~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~V--vef~~~ 75 (323)
|||++++ +++ ++|.|+|+||++||||||||||++||.|+|+|+|||++ +++|+ +++|++++|+|+| ++|||+
T Consensus 1 Mki~~~~~~~~~~-~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~Rkv~~-~~~g~-~~~r~~~~L~i~Ve~~~f~~~ 77 (386)
T 2vgn_A 1 MKVISLKKDSFNK-GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKL-DEAGK-KKSTDLVKLKIKVISEDFDMK 77 (386)
T ss_dssp CEEEEEEECSSCT-TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEEEEEEEEETT
T ss_pred CeeeeeccccccC-CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEEEEec-cCCCC-ceEEEEEEEEEEEEEEEecCC
Confidence 9999999 777 89999999999999999999999999999999999988 67777 8999999999999 999999
Q ss_pred CCeEEEEEEEeecCcc-----cccccEEEEEEccCceeEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEE
Q 020677 76 GSVLRIRGKNILENEH-----VKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLV 150 (323)
Q Consensus 76 ~~~Lri~G~i~~~~e~-----v~~G~~HTi~i~~~~~~~i~K~~wd~~~~e~L~~a~~~~~~~~~~~vvid~g~A~i~ll 150 (323)
+++|||+|+|+++|++ |++|+|||++|+||+||+++||+|++|++++|++|++++.++.+++|+||+|.|+||++
T Consensus 78 ~~~lri~G~i~~~~~~~~~~~vk~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l 157 (386)
T 2vgn_A 78 DEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLV 157 (386)
T ss_dssp TTEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTCTTTTTCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEEEccCCccccccccCccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhccccCCCEEEEEEECCcEEEEEE
Confidence 9999999999999998 99999999999999999999999999999999999998888899999999999999999
Q ss_pred ecceEEEEEEEEEecCCCCCCCcc-hhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccc
Q 020677 151 GRSMTITRSRIETSIPRKHGPAIA-GYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLR 229 (323)
Q Consensus 151 ~~~~~~~~~~i~~~ip~K~~~~~s-~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~~~~~ 229 (323)
++++++++++++.++|+||++||+ ++++++++||++|++++.+++++.++++||||||||+|++|++|+.+++++..++
T Consensus 158 ~~~~~~~~~~i~~~iP~K~~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~~l~~~~~~~~~~ 237 (386)
T 2vgn_A 158 TSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNK 237 (386)
T ss_dssp CSSCEEEEEEEEC---------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHHHHHHHHHTTCH
T ss_pred ECCEEEEEEEEEecCCCCccCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhhccc
Confidence 999999999999999999988754 4899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcEEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEE
Q 020677 230 PIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTL 309 (323)
Q Consensus 230 ~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetL 309 (323)
.|+.+++||+++|+|+++.+|++|+|++|+++++|+++++++|.++|++|++++++|++++|||+++|.+|+++|||+||
T Consensus 238 ~~~~~~~ki~vv~~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVetL 317 (386)
T 2vgn_A 238 KILDNKGMFFIAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYL 317 (386)
T ss_dssp HHHTTGGGEEEEECSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEE
T ss_pred hhhhccCcEEEEECCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccCCC
Q 020677 310 LITDDLFRLVCS 321 (323)
Q Consensus 310 LIsD~l~r~~d~ 321 (323)
||+|+++|++|+
T Consensus 318 LV~d~l~r~~d~ 329 (386)
T 2vgn_A 318 LLTDKVLHSDNI 329 (386)
T ss_dssp EEETTGGGSSCH
T ss_pred EEechhhcCCCc
Confidence 999999998774
No 3
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4e-87 Score=643.15 Aligned_cols=304 Identities=27% Similarity=0.433 Sum_probs=291.7
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCC-CCccceEEEEEEEEEE--EEeecCCC
Q 020677 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMAS-GSRDAERVKLKLEIKV--VDYDKEGS 77 (323)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~E~~dDlw~lynli~~GD~V~a~T~Rkv~~~~~~-g~~~~~r~~~~L~i~V--vef~~~~~ 77 (323)
|||++++ +++|.|+|+||++||||||||||++||.|+|+|+|||++++++ ++++++|++|+|+|+| ++|||+++
T Consensus 1 Mki~~~~---~~~g~v~l~pE~~dDlw~ly~li~~gD~v~a~T~Rkv~~~~~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~ 77 (357)
T 3j15_A 1 MEILEEK---PKEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSLRAEKVEVIPVFLGVQAEKINFHKFAN 77 (357)
T ss_dssp CCCEECS---TTSSSEECCCCSHHHHHHHHHHCCSSCEEECCCCCCCCCCCSSSCCCCCCCCCCCCEEECSCEEEETTTT
T ss_pred CceeEec---CCCceEEEEECChHHHHHHHHhCCCCCEEEEEEEEEEEcCCCCcCCCccEEEEEEEEEEEEEEEecCCCC
Confidence 9999999 5899999999999999999999999999999999999988766 4788999999999999 99999999
Q ss_pred eEEEEEEEeecC-cccccccEEEEEEccCceeEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEE
Q 020677 78 VLRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTI 156 (323)
Q Consensus 78 ~Lri~G~i~~~~-e~v~~G~~HTi~i~~~~~~~i~K~~wd~~~~e~L~~a~~~~~~~~~~~vvid~g~A~i~ll~~~~~~ 156 (323)
+|||+|+|+++| +++++|+|||++|+||+||+++||.|++|++++|++|++++.++.+++|+||+|+|+||++++++++
T Consensus 78 ~Lri~G~i~~~~~~~v~~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~~l~~~~~~ 157 (357)
T 3j15_A 78 QVRVTGPIVYASREDVPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVREYGVE 157 (357)
T ss_dssp EEEECCBEEECCCSSCCCSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEEEEEeccccccccccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHhccccCcEEEEEEECCcEEEEEEeCCEEE
Confidence 999999999999 8999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccC
Q 020677 157 TRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 236 (323)
Q Consensus 157 ~~~~i~~~ip~K~~~~~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~~~~~~~~~~~~ 236 (323)
+++++++++|||++ |+.+++++++||++|++++.+++++.++++||||||||+|++|++||++++++ +++
T Consensus 158 ~~~~i~~~ipkK~~--~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l~~~~~~--------l~~ 227 (357)
T 3j15_A 158 ILNSIRHNLGGKRY--NTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPE--------LAK 227 (357)
T ss_dssp EEECCCCCSCSSSS--SCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHHHHHSCC--------SSC
T ss_pred EEEEEEecCCCCcc--cchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHHHHhhHH--------hhC
Confidence 99999999999986 56688999999999999999999999999999999999999999999986532 357
Q ss_pred cEEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCCc
Q 020677 237 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 316 (323)
Q Consensus 237 ki~~~~~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l~ 316 (323)
||+++|+|++|.+||+|+|++|+++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++
T Consensus 228 kvv~v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~ 307 (357)
T 3j15_A 228 KVVIEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELL 307 (357)
T ss_dssp EECCCCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHH
T ss_pred eEEEEeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEecccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 020677 317 R 317 (323)
Q Consensus 317 r 317 (323)
|
T Consensus 308 r 308 (357)
T 3j15_A 308 K 308 (357)
T ss_dssp T
T ss_pred c
Confidence 8
No 4
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.6e-84 Score=619.19 Aligned_cols=293 Identities=24% Similarity=0.393 Sum_probs=255.8
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEE--EEeecCCCe
Q 020677 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKV--VDYDKEGSV 78 (323)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~E~~dDlw~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~V--vef~~~~~~ 78 (323)
|||++++ .++++|.|+|+||++||||||||||++||.|+|+| |||+.++++++.+++|++|+|+|+| ++|||++++
T Consensus 1 Mki~~~~-~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T-Rkv~~~~~~~~~~~er~~~~L~i~Ve~ief~~~~~~ 78 (352)
T 3oby_A 1 MQIVEEN-LRDNEGEIKLIPETLDDLWHLRFIIEKGDVVFATT-KRASQSSDKLRSDKEMVTVRLGIEVEKVEFHRFANR 78 (352)
T ss_dssp CEEEEEC-CBTTEEEEEEECCSHHHHHHHHHHSCTTCEEEECC-C---------------CCCCEEEEEEEEEECSSSSC
T ss_pred Cceeeec-cCCCceeEEEEeCChHHHHHHHHhccCCCEEEEEE-EEEeccCCCCCcceEEEEEEEEEEEEEEEecCCCCE
Confidence 9999999 78899999999999999999999999999999999 9999888777444599999999999 999999999
Q ss_pred EEEEEEEeecCcccccccEEEEEEccCceeEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEE
Q 020677 79 LRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITR 158 (323)
Q Consensus 79 Lri~G~i~~~~e~v~~G~~HTi~i~~~~~~~i~K~~wd~~~~e~L~~a~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~ 158 (323)
|||+|+|+++|++ |+|||++|+||+||+++| +|++|++++|++|++++.++.+|+|+||+|+|+||+|++++++++
T Consensus 79 Lri~G~i~~~~~~---G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~ 154 (352)
T 3oby_A 79 LRVSGKIVAGIEE---SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEI 154 (352)
T ss_dssp EEEEEEEEEC-------CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEE
T ss_pred EEEEEEEEecCCC---CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEE
Confidence 9999999999988 999999999999999999 899999999999999888889999999999999999999999999
Q ss_pred EEEEEecCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCcE
Q 020677 159 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 238 (323)
Q Consensus 159 ~~i~~~ip~K~~~~~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~~~~~~~~~~~~ki 238 (323)
+++++++|||++ ++ .++||++|++++.++ +++|||||||||+|++|++||.+++++ +++||
T Consensus 155 ~~i~~~ipkK~g--~~-----r~~F~~~V~e~~~~~----~v~~iIlaGPg~~K~~f~~~l~~~~~~--------l~~kv 215 (352)
T 3oby_A 155 FEERMGYGKGMG--DS-----RKEFFGEVAAKLESF----DFKYLIVAGPGFAKNDFLDFLKERYPE--------MAKNA 215 (352)
T ss_dssp EEEEC----------C-----CCCHHHHHHHHHHHH----CCSEEEEECSTTHHHHHHHHHHHHCHH--------HHTTE
T ss_pred EEEeccCCCccc--hh-----HHHHHHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHHHHHHHH--------hhCcE
Confidence 999999999863 32 289999999999998 799999999999999999999996543 34688
Q ss_pred EEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCCccc
Q 020677 239 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 318 (323)
Q Consensus 239 ~~~~~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~ 318 (323)
+++|+|+||++||+|+|++|+++++|+|+|+++|.++|++||++|++| ++||||+++|.+|+++|||++|||+|+++|+
T Consensus 216 v~v~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~ 294 (352)
T 3oby_A 216 VVVDVSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADEFLLE 294 (352)
T ss_dssp EECCCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHHHHHH
T ss_pred EEEECCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEeccchhc
Confidence 899999999999999999999999999999999999999999999999 9999999999999999999999999999985
Q ss_pred C
Q 020677 319 V 319 (323)
Q Consensus 319 ~ 319 (323)
.
T Consensus 295 ~ 295 (352)
T 3oby_A 295 E 295 (352)
T ss_dssp H
T ss_pred c
Confidence 4
No 5
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.2e-83 Score=615.34 Aligned_cols=293 Identities=22% Similarity=0.306 Sum_probs=258.1
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEE--EEeecCCCe
Q 020677 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKV--VDYDKEGSV 78 (323)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~E~~dDlw~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~V--vef~~~~~~ 78 (323)
|||++++. ++|.|+|.||++||||||||||++||.|+|+|+|||+. |+ +++|++|+|+|+| +||||++++
T Consensus 21 Mki~~~~~---~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~----~~-~~~r~~~~L~i~Ve~ief~~~~~~ 92 (364)
T 3obw_A 21 MRILEFDE---KRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGL----GK-ESRRIPMTIILKVDYTEFQEFTNR 92 (364)
T ss_dssp ------CC---CCCCEEEECCSHHHHHHHHHHCCTTCEEEEEEEEECC--------CCCEEEEEEEEEEEEEEEETTTTE
T ss_pred cEEEEecC---CCceEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEEc----CC-ceEEEEEEEEEEEEEEEecCCCCE
Confidence 99999884 89999999999999999999999999999999999974 32 5799999999999 999999999
Q ss_pred EEEEEEEeecC-cccccccEEEEEEccCceeEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEE
Q 020677 79 LRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTIT 157 (323)
Q Consensus 79 Lri~G~i~~~~-e~v~~G~~HTi~i~~~~~~~i~K~~wd~~~~e~L~~a~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~ 157 (323)
|||+|+|+++| +++++|+|||++|+||+||+++|+.|++|++++|+++++. ++.+++|+||+|+|+||+|+++++++
T Consensus 93 Lri~G~iv~~~~~~v~~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~~--~~~~~~vv~d~g~A~i~~l~~~~~~~ 170 (364)
T 3obw_A 93 LRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANK--RSRIIIALVDFDEYLIAIPFEQGIKI 170 (364)
T ss_dssp EEEEEEEEECCGGGCCTTCEEEEEECTTCEEEEECSCC----------------CCCEEEEEEETTEEEEEEECSSCEEC
T ss_pred EEEEEEEEeccccccccceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhCc--CCCEEEEEEECCcEEEEEEeCCEEEE
Confidence 99999999988 8999999999999999999999999999999999999985 45999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCc
Q 020677 158 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSR 237 (323)
Q Consensus 158 ~~~i~~~ip~K~~~~~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~~~~~~~~~~~~k 237 (323)
++++++++|||++ +++++||++|++++.+++++.++++||||||||+|++|++||+++++ +.+
T Consensus 171 ~~~i~~~iPkK~~-------~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l~~~~~----------~~~ 233 (364)
T 3obw_A 171 LSEKSLRPLNEEE-------GIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAILK----------NKK 233 (364)
T ss_dssp CCEEECGGGCSST-------THHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHHHTTTC----------CSE
T ss_pred EEEEEeeCccchh-------HHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHHHHHhh----------cCe
Confidence 9999999999963 68899999999999999999999999999999999999999988652 357
Q ss_pred EEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCCcc
Q 020677 238 IILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 317 (323)
Q Consensus 238 i~~~~~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r 317 (323)
+.++|+|+++++||+|+|++|+++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++|
T Consensus 234 i~~vd~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r 313 (364)
T 3obw_A 234 IYIDSVSSATRAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLS 313 (364)
T ss_dssp EEEECCSCSSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGS
T ss_pred EEEEeCCCCchHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 020677 318 LVC 320 (323)
Q Consensus 318 ~~d 320 (323)
+.|
T Consensus 314 ~~d 316 (364)
T 3obw_A 314 SDE 316 (364)
T ss_dssp SCH
T ss_pred ccc
Confidence 864
No 6
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=1.8e-79 Score=590.63 Aligned_cols=297 Identities=21% Similarity=0.314 Sum_probs=282.7
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEE--EEeecCCCe
Q 020677 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKV--VDYDKEGSV 78 (323)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~E~~dDlw~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~V--vef~~~~~~ 78 (323)
|||+++++ .+|.|+|+||++||||||||||++||.|+|+|+|||++ |+++++|++++|+|+| ++|||++++
T Consensus 3 Mki~~~~~---~~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R~v~~----g~~~~~r~~~~l~i~Ve~~~f~~~~~~ 75 (358)
T 3agj_B 3 MRVEVLDN---KRRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRDVPV----GSGRKERVVMTLRIRLDSIEFQPFTGK 75 (358)
T ss_dssp CEEEECSS---SSCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEEEECC----SSSCCEEEEEEEEEEEEEEEECTTSCE
T ss_pred CEEEEeec---cCCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEec----CCCccEEEEEEEEEEEEEEEcCCCCCE
Confidence 99999997 38999999999999999999999999999999999975 6677899999999999 999999999
Q ss_pred EEEEEEEeecC-cccccccEEEEEEccCceeEEEEcc-cChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEE
Q 020677 79 LRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDL-WDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTI 156 (323)
Q Consensus 79 Lri~G~i~~~~-e~v~~G~~HTi~i~~~~~~~i~K~~-wd~~~~e~L~~a~~~~~~~~~~~vvid~g~A~i~ll~~~~~~ 156 (323)
|||+|+|+.+| ++|++|+|||++|+||+||+++|++ |++|++++|++| +.++.+++|+||+|+|+||++++++++
T Consensus 76 Lri~G~i~~~~~~~v~~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~---~~~~~~~~vvvd~~~A~i~~l~~~~~~ 152 (358)
T 3agj_B 76 LRISGIVVEGPDEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG---RARGTAVIAAVDYDEFALAVLAGHGMK 152 (358)
T ss_dssp EEEEEEEEECCGGGCCTTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC---CCCCEEEEEEECSSEEEEEEEESSCEE
T ss_pred EEEEEEEccCCCcccccccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh---CcCCCEEEEEEECCcEEEEEEeCCEEE
Confidence 99999999999 7999999999999999999999987 999999999999 445699999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccC
Q 020677 157 TRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 236 (323)
Q Consensus 157 ~~~~i~~~ip~K~~~~~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~~~~~~~~~~~~ 236 (323)
++++++.++|||| + +++++++++||++|++++.+++++.++++||||||||+|++|++||.++++++
T Consensus 153 ~~~~i~~~vpkK~-g--~q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L~~~~~~~---------- 219 (358)
T 3agj_B 153 ILEDTSARLPGKD-D--PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQRAMPSL---------- 219 (358)
T ss_dssp EEEEEECCCCCTT-S--TTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHHHHHSTTS----------
T ss_pred EEEEEEecCCCCC-c--hHHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhc----------
Confidence 9999999999998 3 44899999999999999999999889999999999999999999999997642
Q ss_pred cEEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCCc
Q 020677 237 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 316 (323)
Q Consensus 237 ki~~~~~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l~ 316 (323)
++.++++|+++++|++|+|++++++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++
T Consensus 220 ~i~~v~~s~g~~~gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~ 299 (358)
T 3agj_B 220 KVATVDTSMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLL 299 (358)
T ss_dssp EEEEEECSCCHHHHHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHH
T ss_pred eEEEEEcCCCCchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 020677 317 RLVC 320 (323)
Q Consensus 317 r~~d 320 (323)
|++|
T Consensus 300 r~~d 303 (358)
T 3agj_B 300 HSPD 303 (358)
T ss_dssp TCSS
T ss_pred cCCC
Confidence 9865
No 7
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=3.4e-78 Score=578.52 Aligned_cols=290 Identities=24% Similarity=0.421 Sum_probs=252.7
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEecc-CCCCccceEEEEEEEEEE--EEeecCCC
Q 020677 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQM-ASGSRDAERVKLKLEIKV--VDYDKEGS 77 (323)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~E~~dDlw~lynli~~GD~V~a~T~Rkv~~~~-~~g~~~~~r~~~~L~i~V--vef~~~~~ 77 (323)
|||+++++ ++|.|+|+||++||||||||||++||.|+|+|+|||++++ .+|+++++|++++|+|+| ++|||+++
T Consensus 1 Mki~~~~~---~~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~Rkv~~~~~~~g~~~~er~~~~l~i~Ve~v~f~~~~~ 77 (347)
T 2qi2_A 1 MRILEEDL---KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLKVEKIEFQDFDN 77 (347)
T ss_dssp CEEEEEET---TTTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCEEEEEEEEEEECCTTCSCEEE
T ss_pred CceeEeec---cCcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEecccccCCCCccEEEEEEEEEEEEEEEccCCCC
Confidence 99999997 3899999999999999999999999999999999998854 556778999999999999 99999999
Q ss_pred eEEEEEEEeecCcccccccEEEEEEccCceeEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEE
Q 020677 78 VLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTIT 157 (323)
Q Consensus 78 ~Lri~G~i~~~~e~v~~G~~HTi~i~~~~~~~i~K~~wd~~~~e~L~~a~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~ 157 (323)
+||++|.++.+|++ ++|+|||++++||+||+++| +|++|++++|++|++++.++.+++|+||+|.|+||+++++++++
T Consensus 78 ~Lri~G~vv~~~~~-~~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~ 155 (347)
T 2qi2_A 78 RLRILGTVIEGPED-TKGKHQSITVTVDSEISITK-EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQ 155 (347)
T ss_dssp EEEECC----------CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEEE
T ss_pred EEecceEEEEcCCC-CCccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEEE
Confidence 99999999999988 88999999999999999999 99999999999999986666999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCcchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCc
Q 020677 158 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSR 237 (323)
Q Consensus 158 ~~~i~~~ip~K~~~~~s~~~~~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~~~~~~~~~~~~k 237 (323)
++++++++|||++ ||++. .++||++|++++.++ + ++||||||||+|++|++|+.++++ ++
T Consensus 156 ~~~i~~~~~Kk~~--~s~f~--r~~F~~~V~~~~~~~-d----~~lIlaGPg~~k~~f~~~l~~~~~-----------~~ 215 (347)
T 2qi2_A 156 VGTVYSGRSGKYA--EGNYS--EASYFDQIVNALKNY-S----NSIIILGPGFARDRFARYCAQRGV-----------NV 215 (347)
T ss_dssp EEEEECCHHHHC------CC--HHHHHHHHHHHHHTC-C----SCEEEEESSSHHHHHHHHHHHTSC-----------CC
T ss_pred EEEEeecCCCccc--cchhh--HHHHHHHHHHHHHhc-C----CeEEEECCHHHHHHHHHHHHHhhc-----------ce
Confidence 9999999888775 44433 389999999999998 3 999999999999999999999864 35
Q ss_pred EEEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCCcc
Q 020677 238 IILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 317 (323)
Q Consensus 238 i~~~~~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r 317 (323)
++++++|+++++|++|+|++|+++++|+++++++|.++|++|++++++| ++|||+++|.+|+++|||++|||+|+++|
T Consensus 216 i~~v~~s~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~r 293 (347)
T 2qi2_A 216 IGSFPANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMFR 293 (347)
T ss_dssp SCCEECSSSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHHT
T ss_pred EEEEecCCCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEeccccc
Confidence 6789999999999999999999999999999999999999999999998 99999999999999999999999999986
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-51 Score=401.57 Aligned_cols=254 Identities=20% Similarity=0.255 Sum_probs=116.1
Q ss_pred EEeEE-EEEeccCCCCccceEEEEEEEEEEEEeecCCCeEEEEEEEeecCcccccccEEEEEEccCceeEEEEc-ccChh
Q 020677 41 AVTVR-KVLRQMASGSRDAERVKLKLEIKVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWDSL 118 (323)
Q Consensus 41 a~T~R-kv~~~~~~g~~~~~r~~~~L~i~Vvef~~~~~~Lri~G~i~~~~e~v~~G~~HTi~i~~~~~~~i~K~-~wd~~ 118 (323)
|.|.| |+++.+.+|+.++.+.+++|..+| |.++.++++|+|+.++ +.|+|||++|+||+||+++|| +|++|
T Consensus 64 asnIksk~~r~~v~~ai~s~~~rlkl~~~v----p~~g~v~~~G~~~~e~---~~~~~~T~~iep~~pi~i~k~~~w~~~ 136 (441)
T 3e20_C 64 ASNIKSRVNRLSVLSAITSTRERLKLYNKV----PDNGLVIYCGEVIMEG---NKTRKLNIDFEPFKPINTSQYLCDNKF 136 (441)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHTTCSSC----TTSCCEEEEEEECCGG---GCCEEEEEEECCSCCTTCCEEEEESSC
T ss_pred hhhhhhhhhccchhhHHHHHHHHHhhhccC----CCCCEEEEeceeeccC---CceeEEEEEecCCCceEEEEEccCCHH
Confidence 34445 555555566556667777777666 8899999999999876 468999999999999999999 79999
Q ss_pred hHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCC-Ccch------hhHHHHHHHHHHHHHH
Q 020677 119 ALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAF 191 (323)
Q Consensus 119 ~~e~L~~a~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~f~~~v~~~l 191 (323)
++++|++|++++. .+++|+||+++|.++++.+++++++++++.++|+||++ |||+ +++++++||++|++++
T Consensus 137 ~le~L~eal~~~~--~~gvVvvD~~ga~i~~l~g~~~evl~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l 214 (441)
T 3e20_C 137 HTEALAELLESDQ--RFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGA 214 (441)
T ss_dssp CCTTGGGGC-----------------------------------------------------------------------
T ss_pred HHHHHHHHhCccC--cEEEEEEecCCeEEEEEecCeEEEEEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 79999999999999999999999999999999999766 5776 7788999999999999
Q ss_pred Hhccc---ccCccEEEEECCcccHHHHHH--HHHHHHHhccccccccccCcE-EEEEcCCCccchHHHHhcChhHHHhhh
Q 020677 192 LKHVD---FNVVRCAVIASPGFTKDQFHR--HLLLEAERRQLRPIIENKSRI-ILVHTSSGYKHSLREVLDAPNVMNMIK 265 (323)
Q Consensus 192 ~~~~~---~~~v~~iIIaGPGf~kd~f~~--~l~~~~~~~~~~~~~~~~~ki-~~~~~s~~~~~gl~Evl~~~~v~~~l~ 265 (323)
.+++. +.++++||||||||+|++|++ |+.+++. +++ .++++|+|+++|++|+|++ ++++|+
T Consensus 215 ~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L~-----------~kvv~~vdvs~gg~~Gl~EvL~~--~~~~L~ 281 (441)
T 3e20_C 215 VQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQ-----------SRIIKTVDVSYGGDAGFNQAIEL--AADTLS 281 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCHHHH-----------hheEEEEECCCCCccCHHHHHHH--HHHHHH
Confidence 99986 578999999999999999998 6765543 233 5789999999999999999 489999
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCCc
Q 020677 266 DTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 316 (323)
Q Consensus 266 d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l~ 316 (323)
++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|++.
T Consensus 282 d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~ 332 (441)
T 3e20_C 282 NVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLD 332 (441)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccc
Confidence 999999999999999999999999999999999999999999999999996
No 9
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=8.5e-49 Score=386.48 Aligned_cols=271 Identities=14% Similarity=0.172 Sum_probs=234.9
Q ss_pred hHhhhcCCCCEEEEEeEEEEEecc--CCCCccceEEEEEEEEEE--EEe-----ecCCCeEEEEEEEeecCcccccccEE
Q 020677 28 FAYNLIAPGDSVMAVTVRKVLRQM--ASGSRDAERVKLKLEIKV--VDY-----DKEGSVLRIRGKNILENEHVKIGAFH 98 (323)
Q Consensus 28 ~lynli~~GD~V~a~T~Rkv~~~~--~~g~~~~~r~~~~L~i~V--vef-----~~~~~~Lri~G~i~~~~e~v~~G~~H 98 (323)
.+|++|.|||.|.+.|.|+++..+ +.-..+.+|..+.++|++ .+| .|..+.+.++|.+++++.+ ++||
T Consensus 34 ~isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~~l~~~~~~~~~Glvvf~g~~~~~~g~---~~~~ 110 (437)
T 1dt9_A 34 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGK---EKKV 110 (437)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTCSSCCTTCEEEEEEEEECGGGC---EEEE
T ss_pred EEEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHHHhccCCCCCCCeEEEEeCccccCCCc---eEEE
Confidence 368999999999999999975321 111235788999999988 778 6778888888888776533 6899
Q ss_pred EEEEccCcee--EEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCC-Ccch
Q 020677 99 TLEIELHRAF--VLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG 175 (323)
Q Consensus 99 Ti~i~~~~~~--~i~K~~wd~~~~e~L~~a~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~-~~s~ 175 (323)
|++++|++|| +++| +|++|++++|.+++++.. .+++|+||+|.|+||++++++++++++++.++|+|+++ |||+
T Consensus 111 tl~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~~~~--~~~vvvvd~~~A~i~~~~~~~~~~~~~i~~~~P~K~~~Gg~s~ 187 (437)
T 1dt9_A 111 NIDFEPFKPINTSLYL-CDNKFHTEALTALLSDDS--KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSA 187 (437)
T ss_dssp EEEECCSCCTTCCEEE-EESSCCCHHHHHHCCCCC--EEEEEECCSSCCCEEEEETTEEEEEECCCCCCSCCCCSSCSCS
T ss_pred EEEecCCCCCceeEEE-ecChhhHHHHHHHhcCCC--CEEEEEEeCCceEEEEEcCcEEEEEEEEEecCCCCCcCCCcch
Confidence 9999999999 6776 899999999999999855 89999999999999999999999999999999999886 6675
Q ss_pred ------hhHHHHHHHHHHHHHHHhcccc---cCccEEEEECCcccHHHHHHH--HHHHHHhccccccccccCcEEEEEcC
Q 020677 176 ------YESALNKFFENVLQAFLKHVDF---NVVRCAVIASPGFTKDQFHRH--LLLEAERRQLRPIIENKSRIILVHTS 244 (323)
Q Consensus 176 ------~~~~~~~f~~~v~~~l~~~~~~---~~v~~iIIaGPGf~kd~f~~~--l~~~~~~~~~~~~~~~~~ki~~~~~s 244 (323)
+++++++||++|++++.+++.+ .++++||||||||+|++|.+| +.+.+ .. ..+.++++|
T Consensus 188 ~Rf~R~ree~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~l~~~L--------~~--~vv~~v~~s 257 (437)
T 1dt9_A 188 LRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRL--------QS--KVLKLVDIS 257 (437)
T ss_dssp HHHHHHHHHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSSSCTTT--------TT--TCCCEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhccChhh--------Hh--cEEEEEecC
Confidence 3777889999999999999965 379999999999999999763 43222 11 134678999
Q ss_pred CCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCCc
Q 020677 245 SGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 316 (323)
Q Consensus 245 ~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l~ 316 (323)
+|+++|++|+|++. +++|+++++++|.++|++|++++++|++++|||+++|.+|+++|||+||||+|+++
T Consensus 258 ~g~~~gl~E~l~~~--~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~ 327 (437)
T 1dt9_A 258 YGGENGFNQAIELS--TEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLD 327 (437)
T ss_dssp SCTTHHHHHHHHHH--SSTTTSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCC
T ss_pred CCccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEecCcc
Confidence 99999999999984 99999999999999999999999999999999999999999999999999999999
No 10
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=100.00 E-value=1.2e-41 Score=329.19 Aligned_cols=220 Identities=20% Similarity=0.273 Sum_probs=188.5
Q ss_pred cCCCeEEEEEEEeecCcccccccEEEEEEccCceeEEEEc-ccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEec
Q 020677 74 KEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGR 152 (323)
Q Consensus 74 ~~~~~Lri~G~i~~~~e~v~~G~~HTi~i~~~~~~~i~K~-~wd~~~~e~L~~a~~~~~~~~~~~vvid~g~A~i~ll~~ 152 (323)
|..+..-++|... ..|+|||++++|+.||++.|+ +|++|++++|.++++... .+++|+||+|.|.||++++
T Consensus 89 ~~~Gl~vf~~~~~------~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~--~~~vvvvd~~~A~i~~~~~ 160 (373)
T 3agk_A 89 PPNGLVLFCGEDM------STGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNN--AIGIIIVERDQATIGLLKG 160 (373)
T ss_dssp CTTCEEEEEEC-----------CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSC--EEEEEEEETTEEEEEEEET
T ss_pred CCCEEEEEEecCC------CCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCCC--CEEEEEEeCCcEEEEEEeC
Confidence 4444444455432 569999999999999999998 567899999999998864 9999999999999999999
Q ss_pred ceEEEEEEEEEecCCCCCC-Ccch------hhHHHHHHHHHHHHHHHhccc----ccCccEEEEECCcccHHHHH--HHH
Q 020677 153 SMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHVD----FNVVRCAVIASPGFTKDQFH--RHL 219 (323)
Q Consensus 153 ~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~f~~~v~~~l~~~~~----~~~v~~iIIaGPGf~kd~f~--~~l 219 (323)
+++.++.+++.++|+|+++ |+|+ +++.+++||++|++++.+++. +.++++||||||||+|++|+ +||
T Consensus 161 ~~~~~~~~i~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l 240 (373)
T 3agk_A 161 ARLEVLKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNYL 240 (373)
T ss_dssp TEEEEEEEEECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSCS
T ss_pred cEEEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhhc
Confidence 9999999999999999876 5676 788899999999999999983 47899999999999999999 899
Q ss_pred HHHHHhccccccccccCcEE--EEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHH
Q 020677 220 LLEAERRQLRPIIENKSRII--LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHV 297 (323)
Q Consensus 220 ~~~~~~~~~~~~~~~~~ki~--~~~~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV 297 (323)
.+++. ++++ ++|+|+++.+|++|++++ +.++|+++++++|.++|++|+++++++++++|||+++|
T Consensus 241 ~~~l~-----------~~vi~~~v~~s~~~~~g~~E~l~~--~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV 307 (373)
T 3agk_A 241 DYRLK-----------KILAPELVDVAYQGLQGLKEAVMK--AEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDV 307 (373)
T ss_dssp CHHHH-----------TTBCSSCEECCCCHHHHHHHHHHH--CTTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHH
T ss_pred ChHhh-----------hCceeEEEccCCCccccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHH
Confidence 98775 3555 789999999999999996 49999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEEecC
Q 020677 298 EVAHERMAVQTLLITDD 314 (323)
Q Consensus 298 ~~A~e~GAVetLLIsD~ 314 (323)
.+|+++|||+||||+|+
T Consensus 308 ~~Al~~GaVetLlv~d~ 324 (373)
T 3agk_A 308 EAALEMGAVKTLLIHES 324 (373)
T ss_dssp HHHHHTTCEEEEEEETT
T ss_pred HHHHHhCCccEEEEeCC
Confidence 99999999999999997
No 11
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=99.77 E-value=5e-19 Score=152.36 Aligned_cols=74 Identities=26% Similarity=0.402 Sum_probs=71.3
Q ss_pred cCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCCccc
Q 020677 243 TSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 318 (323)
Q Consensus 243 ~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~ 318 (323)
.||||++||+|+|++. +++|+++|+++|.++|++||++|++|++++|||+++|.+|+++|||+||||+|+|+|+
T Consensus 2 ~sy~ge~Gl~E~i~~~--~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~ 75 (166)
T 3ir9_A 2 NAYTDESGLSELVNAA--GEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAE 75 (166)
T ss_dssp -CCSCCSSHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCE
T ss_pred CCcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccce
Confidence 5899999999999985 9999999999999999999999999999999999999999999999999999999986
No 12
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.69 E-value=4.7e-18 Score=139.47 Aligned_cols=68 Identities=50% Similarity=0.705 Sum_probs=65.6
Q ss_pred HhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCCcccCCC
Q 020677 254 VLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCS 321 (323)
Q Consensus 254 vl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~ 321 (323)
+|++|+++++|+++++++|.++|++||+++++|++++|||+++|.+|+++|||+||||+|+++|++|+
T Consensus 3 ~l~~~~v~~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~ 70 (124)
T 1x52_A 3 SGSSGTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDV 70 (124)
T ss_dssp SCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCCh
Confidence 58999999999999999999999999999999999999999999999999999999999999998764
No 13
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=74.87 E-value=5.7 Score=31.25 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=34.6
Q ss_pred HHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 275 ALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 275 ~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
+.+++++.+..- +++..|.++|.+|++.|-+.-++|+.+.
T Consensus 16 l~~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~ 55 (120)
T 1xbi_A 16 IQKELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDV 55 (120)
T ss_dssp HHHHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCC
Confidence 456777777776 8999999999999999999999998765
No 14
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.97 E-value=6.3 Score=29.73 Aligned_cols=35 Identities=3% Similarity=0.095 Sum_probs=29.1
Q ss_pred HHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecC
Q 020677 279 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDD 314 (323)
Q Consensus 279 f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~ 314 (323)
.+....+ .+++..|.++|.+|++.|-+.-++++.+
T Consensus 6 ~L~la~k-agk~v~G~~~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 6 ELRKAME-TGKVVLGSNETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HHHHHHH-SSCEEESHHHHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHH-hCCEeECHHHHHHHHHcCCccEEEEeCC
Confidence 3344343 4899999999999999999999999987
No 15
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=67.39 E-value=8.9 Score=30.13 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=27.5
Q ss_pred cCCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 285 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 285 ~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
...++...|.++|.+|++.|-+.-++|+.+.
T Consensus 16 ~k~gkl~~G~~~v~kai~~gkakLViiA~D~ 46 (121)
T 2lbw_A 16 SKAKNVKRGVKEVVKALRKGEKGLVVIAGDI 46 (121)
T ss_dssp HTTTCEEESHHHHHHHHHHSCCCEEEECTTC
T ss_pred HHcCCccccHHHHHHHHHcCCceEEEEeCCC
Confidence 3458999999999999999999999998764
No 16
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=66.85 E-value=4.7 Score=30.67 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.0
Q ss_pred hcCCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 284 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 284 ~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
+...+++..|.++|.+|++.|-+.-++++.+.
T Consensus 14 a~kagk~v~G~~~v~kai~~gka~lViiA~D~ 45 (101)
T 3v7q_A 14 ANRARKVVSGEDLVIKEIRNARAKLVLLTEDA 45 (101)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred hhhhhhcccchhhhHHHHhcCceeEEEEeccc
Confidence 33458999999999999999999999998764
No 17
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=65.71 E-value=6.8 Score=29.92 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=26.6
Q ss_pred CCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 287 PTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 287 ~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
.++++.|.++|.+|++.|-+.-++++.+.
T Consensus 20 agklv~G~~~v~kai~~gkaklViiA~D~ 48 (104)
T 4a18_G 20 SGKATLGYKSTIKAIRNGTAKLVFISNNC 48 (104)
T ss_dssp HSEEEESHHHHHHHHHHTCCCEEEECTTS
T ss_pred hCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 38999999999999999999999998764
No 18
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=64.99 E-value=7.8 Score=29.30 Aligned_cols=35 Identities=3% Similarity=0.085 Sum_probs=28.7
Q ss_pred HHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecC
Q 020677 279 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDD 314 (323)
Q Consensus 279 f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~ 314 (323)
++....+ .+++..|.++|.+|++.|-+.-++++.+
T Consensus 7 ~L~la~k-agkl~~G~~~v~kai~~gka~lViiA~D 41 (101)
T 1w41_A 7 ELRKAQD-TGKIVMGARKSIQYAKMGGAKLIIVARN 41 (101)
T ss_dssp HHHHHHH-HSEEEESHHHHHHHHHHTCCSEEEEETT
T ss_pred HHHHHHH-cCCEeECHHHHHHHHHcCCCcEEEEeCC
Confidence 3333333 3899999999999999999999999876
No 19
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=64.74 E-value=8.8 Score=27.96 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=26.1
Q ss_pred CeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 288 TRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 288 ~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
++...|.++|.+|++.|-+.-++|+.+.
T Consensus 10 gk~~~G~~~v~kai~~gkaklViiA~D~ 37 (82)
T 3v7e_A 10 KSIIIGTKQTVKALKRGSVKEVVVAKDA 37 (82)
T ss_dssp SEEEESHHHHHHHHTTTCEEEEEEETTS
T ss_pred CCeeEcHHHHHHHHHcCCeeEEEEeCCC
Confidence 8999999999999999999999998764
No 20
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=64.69 E-value=11 Score=28.45 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=27.5
Q ss_pred cCCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 285 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 285 ~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
...++++.|.++|.+|++.|-+.-++++.+.
T Consensus 14 ~kagk~v~G~~~v~kai~~gka~lViiA~D~ 44 (101)
T 3on1_A 14 ARARQLLTGEEQVVKAVQNGQVTLVILSSDA 44 (101)
T ss_dssp HHTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred HHHCCEeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 3448999999999999999999999998764
No 21
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=62.39 E-value=13 Score=28.27 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=27.8
Q ss_pred cCCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 285 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 285 ~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
...++++.|.++|.+|++.|-+.-+++..+.
T Consensus 18 ~kagk~v~G~~~v~kai~~gkaklVilA~D~ 48 (105)
T 3u5e_c 18 IKSGKYTLGYKSTVKSLRQGKSKLIIIAANT 48 (105)
T ss_dssp HTTSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred HHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 3458999999999999999999999998775
No 22
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=62.23 E-value=5.6 Score=30.73 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=20.7
Q ss_pred HHHHHHHHhcccc-cCccEEEEECCcccH
Q 020677 185 ENVLQAFLKHVDF-NVVRCAVIASPGFTK 212 (323)
Q Consensus 185 ~~v~~~l~~~~~~-~~v~~iIIaGPGf~k 212 (323)
++|++.+...+.. .-+..+-++||||+.
T Consensus 59 ~~iA~~i~~~l~~~~~i~~vevagpGFIN 87 (109)
T 3gdz_A 59 RQLAEQVLSHLDLNGIANKVEIAGPGFIN 87 (109)
T ss_dssp HHHHHHHHHHCCCTTTEEEEEEETTTEEE
T ss_pred HHHHHHHHHhcCcCCcEeEEEEeCCCeEE
Confidence 4777777776653 347889999999864
No 23
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=62.08 E-value=14 Score=28.86 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=26.5
Q ss_pred CCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 287 PTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 287 ~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
.+++..|.++|.+|++.|-+.-++++.+.
T Consensus 27 ag~l~~G~~~v~kal~~gka~lViiA~D~ 55 (120)
T 1vq8_F 27 TGAVKKGTNETTKSIERGSAELVFVAEDV 55 (120)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred cCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 37899999999999999999999998765
No 24
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=59.40 E-value=16 Score=28.28 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=27.7
Q ss_pred cCCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 285 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 285 ~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
...|+...|.++|.+|++.|-+.-++|+.+.
T Consensus 22 ~kagk~~~G~~~t~kai~~gkakLVilA~D~ 52 (112)
T 3iz5_f 22 MKSGKYTLGYKTVLKTLRSSLGKLIILANNC 52 (112)
T ss_dssp HTTCEEEESHHHHHHHHHTTCCSEEEECSCC
T ss_pred HHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 3458999999999999999999999998775
No 25
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=58.99 E-value=11 Score=28.96 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=26.3
Q ss_pred CeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 288 TRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 288 ~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 20 gkl~~G~~~v~kai~~gka~lViiA~D~ 47 (110)
T 3cpq_A 20 GKVILGSKRTIKFVKHGEGKLVVLAGNI 47 (110)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTC
T ss_pred CCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 8999999999999999999999998775
No 26
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=58.60 E-value=18 Score=28.98 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 276 LKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 276 le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
+..++....+. ++...|.++|.+|++.|-+.-++++.+.
T Consensus 29 i~~~L~lA~ka-gklv~G~~~v~kal~~gkaklViiA~D~ 67 (135)
T 2aif_A 29 IINLVQQACNY-KQLRKGANEATKALNRGIAEIVLLAADA 67 (135)
T ss_dssp HHHHHHHHHHT-TCEEESHHHHHHHHHTTCEEEEEEETTC
T ss_pred HHHHHHHHHHc-CCcccCHHHHHHHHHcCCCeEEEEecCC
Confidence 33444444444 8999999999999999999999998764
No 27
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=58.35 E-value=15 Score=28.88 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=26.2
Q ss_pred CeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 288 TRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 288 ~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
++...|.++|.+|++.|-+.-++|+.+.
T Consensus 27 gkl~~G~~~v~kal~~gka~lViiA~D~ 54 (124)
T 2fc3_A 27 GRIKKGTNETTKAVERGLAKLVVIAEDV 54 (124)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred CCccCCHHHHHHHHHcCCceEEEEcCCC
Confidence 7999999999999999999999998765
No 28
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=58.03 E-value=15 Score=28.59 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=26.1
Q ss_pred CeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 288 TRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 288 ~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
++...|.++|.+|++.|-+.-++|+.+.
T Consensus 26 g~l~~G~~~v~kal~~gka~lViiA~D~ 53 (119)
T 1rlg_A 26 GKVKKGTNETTKAVERGLAKLVYIAEDV 53 (119)
T ss_dssp SEEEESHHHHHHHHTTTCCSEEEEESCC
T ss_pred CCeeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 7999999999999999999999998765
No 29
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=55.29 E-value=20 Score=28.67 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=29.4
Q ss_pred HHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 279 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 279 f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
++....+ .++...|.++|.+|++.|-+.-++|+.+.
T Consensus 23 ~L~lA~k-~gkl~~G~~~v~kai~~gkakLViiA~D~ 58 (134)
T 2ale_A 23 VVQQAAN-LRQLKKGANEATKTLNRGISEFIIMAADC 58 (134)
T ss_dssp HHHHHHH-TTCEEESHHHHHHHHHHTCEEEEEEETTC
T ss_pred HHHHHHH-cCCcccCchHHHHHHHhCCCeEEEEeCCC
Confidence 3444443 48899999999999999999999998764
No 30
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=54.80 E-value=24 Score=27.70 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=26.7
Q ss_pred CCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 287 PTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 287 ~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
.+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 29 agklv~G~~~v~kai~~gka~lViiA~D~ 57 (122)
T 3o85_A 29 LQAIKRGANEALKQVNRGKAELVIIAADA 57 (122)
T ss_dssp TTCEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred hCCEeEcHHHHHHHHHcCCceEEEEeCCC
Confidence 48999999999999999999999998765
No 31
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=53.11 E-value=12 Score=29.69 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=26.6
Q ss_pred CCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 287 PTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 287 ~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
.++++.|.++|.+|++.|-+.-++|+.+.
T Consensus 25 aGklv~G~~~v~kaIr~gkakLVIiA~Da 53 (125)
T 3vi6_A 25 SGKYVLGYKQTLKMIRQGKAKLVILANNC 53 (125)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred hCCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 38999999999999999999999998764
No 32
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=51.06 E-value=20 Score=28.42 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 276 LKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 276 le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
+.+++..-. ..++...|.++|.+|++.|-+.-++|..+.
T Consensus 12 l~~~L~~A~-~~gkl~~G~~~v~Kai~~gka~LViiA~D~ 50 (126)
T 2xzm_U 12 LAKVIKSSN-CQDAISKGLHEVLRTIEAKQALFVCVAEDC 50 (126)
T ss_dssp HHHHHTTTT-SSSCEEESHHHHHHHHHHTCCSEEEEESSC
T ss_pred HHHHHHHHH-HcCCEeecHHHHHHHHHcCCceEEEEeCCC
Confidence 334443333 347899999999999999999999998764
No 33
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=39.16 E-value=30 Score=28.05 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=26.9
Q ss_pred CCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 286 DPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 286 ~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
..++...|.++|.+|++.|-+.-++|+.+.
T Consensus 47 kagkl~~G~kev~KaI~~gkakLVIIA~D~ 76 (144)
T 2jnb_A 47 NYKQLRKGANEATKTLNRGISEFIVMAADA 76 (144)
T ss_dssp HTTCCCBCHHHHHHHHHHTCEEEEEEETTC
T ss_pred HcCCccccHHHHHHHHHhCCCeEEEEeCCC
Confidence 347899999999999999999999998764
No 34
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=39.10 E-value=49 Score=30.75 Aligned_cols=90 Identities=13% Similarity=0.177 Sum_probs=45.8
Q ss_pred cCccEEEEECCcc--------cHHHHHHHHHHHHHhccccccccccCcEEEE----EcCCCccchHHHHhcChhHHHhhh
Q 020677 198 NVVRCAVIASPGF--------TKDQFHRHLLLEAERRQLRPIIENKSRIILV----HTSSGYKHSLREVLDAPNVMNMIK 265 (323)
Q Consensus 198 ~~v~~iIIaGPGf--------~kd~f~~~l~~~~~~~~~~~~~~~~~ki~~~----~~s~~~~~gl~Evl~~~~v~~~l~ 265 (323)
..++.||+.||-- +++.+++|+..+.. ++|.+. +.|.+.+..++...++..+.+-+.
T Consensus 140 p~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~-----------~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~ 208 (337)
T 4dey_A 140 PSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFE-----------GRISITRVTADISLAKRSVLNNPSKHAIIERSNT 208 (337)
T ss_dssp CSSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTT-----------TSEEEEEECSCGGGC-------------------
T ss_pred CCCCceEEECCccccchhHHHHHHHHHHhhHHhcC-----------CccceEeecchhhhcchhhhhcccchhhhccccc
Confidence 4678899999986 35666677776654 343222 445666666666667777777777
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCeEE------E-cHHHHHHH
Q 020677 266 DTKAAQEVQALKDFFNMLTNDPTRAC------Y-GPKHVEVA 300 (323)
Q Consensus 266 d~k~~~e~~~le~f~~~l~~~~~~a~------Y-G~~eV~~A 300 (323)
...+..-...+++.++...+| +.| - |...+.++
T Consensus 209 ~~~~~ev~seVe~i~~v~~~G--k~vILDIDvQnGa~qlk~~ 248 (337)
T 4dey_A 209 RSSLAEVQSEIERIFELARTL--QLVVLDADTINHPAQLSKT 248 (337)
T ss_dssp CCCHHHHHHHHHHHHHHTTTC--CEEEEEETTCCSGGGTTTS
T ss_pred ccchHHHHhHHHHHHHHHhCC--CEEEEEeCcHHHHHHHHhc
Confidence 777776666888888877664 333 2 66666443
No 35
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=36.03 E-value=68 Score=28.75 Aligned_cols=69 Identities=7% Similarity=-0.045 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccH-HHHHHHHHHHHHhccccccccccCcEEEEEcCCCccchH
Q 020677 180 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSL 251 (323)
Q Consensus 180 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~k-d~f~~~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl 251 (323)
+++|.+.++..+....+..++..|||+|.-... +.|.+.+.+.+.+....... ..+.+..+..+..+++
T Consensus 241 ~~~~~~~La~~i~~l~~~ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~---~~~~i~~s~l~~~a~~ 310 (321)
T 3r8e_A 241 WADIGTIIGESLVNIVRVMDLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYT---DDMYIGKATLENDAGL 310 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHH---TTCEEEECSSGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEeChhcccchHHHHHHHHHHHHhcccccC---CCCEEEEcCCCCcHHH
Confidence 455666666666666666688999999987644 56667777766553321111 2334455555555554
No 36
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=31.88 E-value=63 Score=28.69 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCcEEEEEcCCCccchHH
Q 020677 180 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 252 (323)
Q Consensus 180 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~ 252 (323)
+++|.+.++..+....+..++..|||+|.-...+.|.+.+.+.+.+... ....+..+..+..+++.
T Consensus 218 ~~~~~~~La~~i~~l~~~~~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~-------~~~~i~~s~lg~~a~~~ 283 (297)
T 4htl_A 218 ITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMESFGL-------RDTIIETATHKNQAGLL 283 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGSTTHHHHHHHHHTTTCC-------TTCEEEECSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccHHHHHHHHHHHHHhcc-------CCCeEEECCcCChHHHH
Confidence 4445555555555555666889999999655545676666666543211 22345566666666654
No 37
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=31.60 E-value=51 Score=26.74 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCeEEEcHHHHHHHHhcCCccEEEEecCC
Q 020677 275 ALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 315 (323)
Q Consensus 275 ~le~f~~~l~~~~~~a~YG~~eV~~A~e~GAVetLLIsD~l 315 (323)
+|.+.++.-... +...-|..++.+|++.|-+.-+++.++-
T Consensus 27 aL~~vLk~A~~~-g~l~~G~~et~Kal~kg~a~LvvLA~D~ 66 (143)
T 3u5c_M 27 ALKVVLRTALVH-DGLARGLRESTKALTRGEALLVVLVSSV 66 (143)
T ss_dssp HHHHHHHHHHHT-TCEEESHHHHHHHHSSTTCSCEECCSCC
T ss_pred HHHHHHHHHHHc-CCEeEcHHHHHHHHhcCceeEEEEeCCC
Confidence 444555554444 6899999999999999999999988764
No 38
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=29.98 E-value=75 Score=29.54 Aligned_cols=47 Identities=15% Similarity=-0.002 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCccc-HHHHHHHHHHHHHhcc
Q 020677 180 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERRQ 227 (323)
Q Consensus 180 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~-kd~f~~~l~~~~~~~~ 227 (323)
+++|.+.++..+....+..++ .|||+|.-.- .+.|.+.+.+.+.+..
T Consensus 240 l~~~~~~Lg~~i~nl~~~ldP-~IviGGgi~~~~~~~~~~l~~~l~~~~ 287 (366)
T 3mcp_A 240 FEELGEMAGDALASAITLIDG-LIVIGGGLSGASKYILPVLLKEMNAQT 287 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-EEEEESGGGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCC-EEEEEChhhhchHHHHHHHHHHHHHhc
Confidence 445555555555565566678 9999987654 3567777777776644
No 39
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=29.55 E-value=1.3e+02 Score=26.78 Aligned_cols=71 Identities=6% Similarity=-0.018 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCcccH-HHHHHHHHHHHHhccc-cccccccCcEEEEEcCCCccchHH
Q 020677 179 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQL-RPIIENKSRIILVHTSSGYKHSLR 252 (323)
Q Consensus 179 ~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~k-d~f~~~l~~~~~~~~~-~~~~~~~~ki~~~~~s~~~~~gl~ 252 (323)
.+++|.+.++..+....+..++..|||+|.-... +.|.+.+.+.+.+... ... ...+.+..+..+..+++.
T Consensus 232 ~~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~---~~~~~i~~s~l~~~a~l~ 304 (321)
T 3vgl_A 232 SFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEW---RPHAQVLAAQLGGKAGLV 304 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGG---SCCCEEEECTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeChhhcchHHHHHHHHHHHHHhcccccc---cCCCEEEECCCCCcHHHH
Confidence 3456666666666666666678999999965443 4455666665554322 111 123345555566665553
No 40
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=26.71 E-value=75 Score=27.81 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHh
Q 020677 180 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 225 (323)
Q Consensus 180 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~ 225 (323)
++++.+.++..+....+..++..|||+|.-...+.|.+.+.+.+.+
T Consensus 208 ~~~~~~~L~~~i~~l~~~l~p~~IvlgG~i~~~~~~~~~l~~~l~~ 253 (292)
T 2gup_A 208 IERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVED 253 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCccccchHHHHHHHHHHHH
Confidence 3445555555555555556788999999875456666666665543
No 41
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=26.35 E-value=1.7e+02 Score=23.41 Aligned_cols=81 Identities=25% Similarity=0.275 Sum_probs=51.5
Q ss_pred CchhhhHhhh----cCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEeecCCCeEEEEEEEeecCcccccccEE
Q 020677 23 SDDLWFAYNL----IAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVVDYDKEGSVLRIRGKNILENEHVKIGAFH 98 (323)
Q Consensus 23 ~dDlw~lynl----i~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Vvef~~~~~~Lri~G~i~~~~e~v~~G~~H 98 (323)
..|||.=|++ |..||.|.-.+= .+.| ..+ +|+..++..+++.|.|.+..-+. |.
T Consensus 35 SkeLr~ky~vRs~~IkkgD~V~Vi~G------kdKG-k~G---------kV~~V~~kk~~V~VEgVn~~K~~----G~-- 92 (135)
T 4a17_S 35 SKDLRSKYNVRSMPVRKDDEVLIVRG------KFKG-NKG---------KVTQVYRKKWAIHVEKISKNKLN----GA-- 92 (135)
T ss_dssp CHHHHHHHTCSEEECCTTCEEEECSS------TTTT-CEE---------EEEEEETTTTEEEETTCCEEETT----TE--
T ss_pred CHHHHHHhCCCcccccCCCEEEEeec------CCCC-cee---------eEEEEEcCCCEEEEeCeEEEcCC----CC--
Confidence 4689999996 999999965532 2233 111 25566777889999998887431 42
Q ss_pred EEEEccC-ceeEEEEcccChhhHHHHHH
Q 020677 99 TLEIELH-RAFVLRKDLWDSLALDTLHQ 125 (323)
Q Consensus 99 Ti~i~~~-~~~~i~K~~wd~~~~e~L~~ 125 (323)
+.+.-.+ ..+.|++..+|..-.+.|+.
T Consensus 93 ~~e~pIh~SNV~i~~~k~dk~R~~~ler 120 (135)
T 4a17_S 93 PYQIPLSASQLVLTKLKLDKSRQSLLTR 120 (135)
T ss_dssp EECCCBCGGGEEEEECCCCHHHHHHHHH
T ss_pred EEEcccchHHEEEEcccCCcHHHHHhhh
Confidence 2222222 56888887788755555553
No 42
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=24.07 E-value=1.1e+02 Score=27.46 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCcEEEEEcCCCccchHH
Q 020677 180 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 252 (323)
Q Consensus 180 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl~ 252 (323)
+++|.+.++..+....+..++..|||+|.=...+.|.+.+.+.+.+... ....+..+..++.+..+++.
T Consensus 250 ~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~----~~~~~~~i~~s~lg~~a~~~ 318 (327)
T 4db3_A 250 VERFMELLAICFGNIFTANDPHVVALGGGLSNFELIYEEMPKRVPKYLL----SVAKCPKIIKAKHGDSGGVR 318 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCTHHHHHHHHHGGGGSC----TTCCCCEEEECSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccchHHHHHHHHHHHHHHhc----cccCCCEEEECCCCCcHHHH
Confidence 3455555555555555556789999999544445566656555543321 11123345555666665553
No 43
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=23.83 E-value=1.1e+02 Score=27.41 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCc-----ccHHHHHHHHHHHHHhccccccccccCcEEEEEcCCCccchH
Q 020677 179 ALNKFFENVLQAFLKHVDFNVVRCAVIASPG-----FTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSL 251 (323)
Q Consensus 179 ~~~~f~~~v~~~l~~~~~~~~v~~iIIaGPG-----f~kd~f~~~l~~~~~~~~~~~~~~~~~ki~~~~~s~~~~~gl 251 (323)
...+++++.+..+....+..++..|||+|.- +..+.+.+.+.+.+ ...+ ...++.+..++.+..+|+
T Consensus 219 ~~~~~~~~~a~~la~l~~~~dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~----~~~~--~~~~~~i~~s~lg~~ag~ 290 (310)
T 3htv_A 219 FVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYL----RRPL--PHQVVRFIAASSSDFNGA 290 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEECTTTTSTTCCHHHHHHHHHHTS----CTTT--TTTTCEEEECCCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEEeCchhccchhHHHHHHHHHHHHh----hccc--ccCCcEEEEcCCCCcHHH
Confidence 4556777777777777777789999999953 33344444443332 1111 112344566666766654
No 44
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=23.82 E-value=1.4e+02 Score=22.52 Aligned_cols=39 Identities=15% Similarity=0.025 Sum_probs=28.0
Q ss_pred E-EEeecCCCeEEEEEEEeecCcccccccEEEEEEccCceeEEEE
Q 020677 69 V-VDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRK 112 (323)
Q Consensus 69 V-vef~~~~~~Lri~G~i~~~~e~v~~G~~HTi~i~~~~~~~i~K 112 (323)
| |.|.|.++.-.|+|++.-.. ...+++....|+.+++..
T Consensus 5 ~~V~F~~G~~~a~v~G~I~g~~-----~~~Y~~~a~aGQ~l~v~l 44 (111)
T 4g9s_B 5 VNVEFRKGHSSAQYSGEIKGYD-----YDTYTFYAKKGQKVHVSI 44 (111)
T ss_dssp EECCCCTTCSEEEEEEEEETTC-----CEEEEEEECTTCEEEEEE
T ss_pred eEEEECCCCCCeEEEEEEeCCC-----ceEEEEEecCCCEEEEEE
Confidence 5 88999999999999997643 223555566666666654
No 45
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=22.30 E-value=2.3e+02 Score=21.62 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=8.9
Q ss_pred cEEEEEEccCceeEEEE
Q 020677 96 AFHTLEIELHRAFVLRK 112 (323)
Q Consensus 96 ~~HTi~i~~~~~~~i~K 112 (323)
+.+|+.|-+|+|+.+.+
T Consensus 50 Q~~tl~lpANqpi~L~~ 66 (110)
T 2xsk_A 50 QEKTLSLPANQPIALTK 66 (110)
T ss_dssp EEEEEEECSSSEEECCC
T ss_pred ccceEecCCCCcceeee
Confidence 34555555555555544
No 46
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=22.13 E-value=2.8e+02 Score=22.52 Aligned_cols=80 Identities=26% Similarity=0.302 Sum_probs=51.7
Q ss_pred CchhhhHhh----hcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEeecCCCeEEEEEEEeecCcccccccEE
Q 020677 23 SDDLWFAYN----LIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVVDYDKEGSVLRIRGKNILENEHVKIGAFH 98 (323)
Q Consensus 23 ~dDlw~lyn----li~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Vvef~~~~~~Lri~G~i~~~~e~v~~G~~H 98 (323)
..+||.=|+ =|.+||.|.-.+= .+.| ..+ +|+..++..+++.|.|++..-.. |.
T Consensus 35 SkELR~ky~vRs~~IkKGD~V~Vi~G------kdKG-k~G---------kVl~V~~kk~~V~VEGVN~~K~~----G~-- 92 (150)
T 3iz5_Y 35 STELRHKYNVRSIPIRKDDEVQVVRG------SYKG-REG---------KVVQVYRRRWVIHVERITREKVN----GS-- 92 (150)
T ss_dssp CHHHHTTTTCSEEECCSSSEEEECSS------TTTT-CEE---------EEEEEETTTTEEEETTCEEECTT----SC--
T ss_pred CHHHHHHhCCcccccCCCCEEEEeec------CCCC-ccc---------eEEEEEcCCCEEEEeCcEEEeCC----CC--
Confidence 467898897 6999999965532 2333 111 25666777889999999987542 32
Q ss_pred EEEEccC-ceeEEEEcccChhhHHHHH
Q 020677 99 TLEIELH-RAFVLRKDLWDSLALDTLH 124 (323)
Q Consensus 99 Ti~i~~~-~~~~i~K~~wd~~~~e~L~ 124 (323)
+.+.-.+ ..+.|++..+|..-.+.|+
T Consensus 93 ~~eapIh~SNV~i~~~k~dk~R~~~le 119 (150)
T 3iz5_Y 93 TVNVGIHPSKVVVTKLKLDKDRKAILD 119 (150)
T ss_dssp EEECCBCGGGEEEEECCCCSHHHHHHH
T ss_pred EEecccchHHEEEEcccCChHHHHHhc
Confidence 3333322 5688888778875555555
No 47
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=20.97 E-value=3.1e+02 Score=21.82 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=54.8
Q ss_pred CceEEEeccC--CchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEE-EEeecCCCeEEEEEEEeecC
Q 020677 13 PGSVKMEPVD--SDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKV-VDYDKEGSVLRIRGKNILEN 89 (323)
Q Consensus 13 ~g~v~l~~E~--~dDlw~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~V-vef~~~~~~Lri~G~i~~~~ 89 (323)
+|.++ ..|| .|| +.-.-...++..+...|+.+|......| .| +-|+...+
T Consensus 24 ~G~lk-rvEDl~teD-Fv~sA~~s~~~~L~~stv~~I~~s~~~g-------------~v~ltF~~g~~------------ 76 (133)
T 1oa8_A 24 NGELK-KVEDLKTED-FIQSAEISNDLKIDSSTVERIEDSHSPG-------------VAVIQFAVGEH------------ 76 (133)
T ss_dssp TSCEE-EGGGCCHHH-HHHHHHHCSSEEEEEEEEEEEEECSSTT-------------EEEEEEEETTT------------
T ss_pred CCceE-EeecccHHH-HHHhhccCcccccccceEEEeecCCCCC-------------eEEEEEeeCCC------------
Confidence 45665 7788 888 4445778888999999999996532222 13 56654322
Q ss_pred cccccccEEEEEEccCceeEEEEcccChhhHHHHHH
Q 020677 90 EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQ 125 (323)
Q Consensus 90 e~v~~G~~HTi~i~~~~~~~i~K~~wd~~~~e~L~~ 125 (323)
.+.-+++..+..||=++-+.|.++.=++=.+
T Consensus 77 -----~~~v~~ev~~ehPFFV~gqGWsSc~P~~T~~ 107 (133)
T 1oa8_A 77 -----RAQVSVEVLVEYPFFVFGQGWSSCCPERTSQ 107 (133)
T ss_dssp -----TEEEEEEEETTCCEEETTTEEEESCHHHHHH
T ss_pred -----ccEEEEEecCCCCcEEcCCcccccCHhHhhH
Confidence 3556778888888888888998865554444
No 48
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=20.74 E-value=1.4e+02 Score=26.68 Aligned_cols=45 Identities=2% Similarity=-0.117 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhc
Q 020677 180 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERR 226 (323)
Q Consensus 180 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~~ 226 (323)
+++|.+.++..+....+..++..|||+|.-. +.|.+.+.+.+.+.
T Consensus 265 l~~~~~~La~~i~~l~~~l~P~~IvlgG~i~--~~~~~~l~~~l~~~ 309 (343)
T 2yhw_A 265 LRTAGTALGLGVVNILHTMNPSLVILSGVLA--SHYIHIVKDVIRQQ 309 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSEEEEESTTH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCCcH--HHHHHHHHHHHHHh
Confidence 4455556666666655666788999999753 56777777766543
No 49
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=20.69 E-value=1.8e+02 Score=25.64 Aligned_cols=47 Identities=6% Similarity=-0.176 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCccc-HHHHHHHHHHHHHhc
Q 020677 180 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERR 226 (323)
Q Consensus 180 ~~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~-kd~f~~~l~~~~~~~ 226 (323)
++++.+.++..+....+..++..|||+|.-+. .+.|.+.+.+.+.+.
T Consensus 243 ~~~~~~~L~~~i~~l~~~l~p~~IvlgGg~~~~~~~~~~~l~~~l~~~ 290 (326)
T 2qm1_A 243 VDRVCFYLGLATGNLGNTLNPDSVVIGGGVSAAGEFLRSRVEKYFQEF 290 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEEESGGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEcChhhhchHHHHHHHHHHHHHh
Confidence 45566666666666555567889999997654 356666666666543
No 50
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=20.55 E-value=1.2e+02 Score=26.57 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHh
Q 020677 181 NKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 225 (323)
Q Consensus 181 ~~f~~~v~~~l~~~~~~~~v~~iIIaGPGf~kd~f~~~l~~~~~~ 225 (323)
+++.+.++..+....+..++..|||+|.-+..+.|.+.+.+.+.+
T Consensus 221 ~~~~~~La~~i~~l~~~l~p~~IvlgGgv~~~~~~~~~l~~~~~~ 265 (299)
T 2e2o_A 221 KQGAELLASQAVYLARKIGTNKVYLKGGMFRSNIYHKFFTLYLEK 265 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEESGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEECCccCcHHHHHHHHHHCCC
Confidence 344444445555555555788999999765556676777666543
Done!