BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020678
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ASU7|PPAN_ARATH Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1
Length = 345
Score = 517 bits (1332), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/303 (82%), Positives = 276/303 (91%), Gaps = 1/303 (0%)
Query: 1 MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
M RF+N+KK + K KK Q V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1 MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60
Query: 60 PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+ LRVARTPQGPTLTFKIH+Y
Sbjct: 61 PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120
Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180
Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240
Query: 240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
GYGSESE D+EAATVTL SDLGRVN+ +TKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct: 241 GYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300
Query: 300 SEY 302
SEY
Sbjct: 301 SEY 303
>sp|Q91YU8|SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=2
Length = 470
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 193/274 (70%), Gaps = 6/274 (2%)
Query: 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
P SFVF+RG+ +RQL +D+R++M P TA L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29 PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
+KT+++ YL++ R P GPTLTF+I +Y+L DV S R R + F PL+VL+ FG
Sbjct: 89 TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGP 148
Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
H+KL MFQN+FP+I+++TV L+T +R +L+NYN D++ +DFRHYS+++ PVG SR
Sbjct: 149 QGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPVGASR 208
Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYG---SESEADDEAATVTLVSDL-GRVNRAST 268
++K +Q + P++ LQD+S+ + G G SE E D E T L + GR N +
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLA-TGVGLSDSEVEPDGEHNTTELPQAVAGRGNMQAQ 266
Query: 269 KSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
+SAV+L EIGPRMTLQLIK++EG+ +G+++F +
Sbjct: 267 QSAVRLTEIGPRMTLQLIKIQEGVGNGNVLFHSF 300
>sp|Q9NQ55|SSF1_HUMAN Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1
Length = 473
Score = 252 bits (643), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 129/273 (47%), Positives = 186/273 (68%), Gaps = 4/273 (1%)
Query: 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
P SFVF+RG +RQL +D+R++M P TA L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
SKTE+ Y ++ R P GPTLTF++ +YSL DV S R R + F PL+VL+ FG
Sbjct: 89 SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148
Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
H+KL MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASR 208
Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEAD---DEAATVTLVSDLGRVNRASTK 269
++K +Q + P++ LQD+S+ + SESEA+ D T + GR N + +
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQ 267
Query: 270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
SAV+L EIGPRMTLQLIKV+EG+ G ++F +
Sbjct: 268 SAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSF 300
>sp|Q5REM3|SSF1_PONAB Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1
Length = 473
Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/273 (46%), Positives = 185/273 (67%), Gaps = 4/273 (1%)
Query: 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
P SFVF+RG +RQL +D+R++M P TA L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
SKTE+ Y ++ P GPTLTF++ +YSL DV S R R + F PL+VL+ FG
Sbjct: 89 SKTETNIYFKLMHLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAYPPLLVLNSFGP 148
Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
H+KL MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNHDSQELDFRHYSIKVVPVGASR 208
Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEAD---DEAATVTLVSDLGRVNRASTK 269
++K +Q + P++ LQD+S+ + SESEA+ D T + GR N + +
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQ 267
Query: 270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
SAV+L EIGPRMTLQLIKV+EG+ G ++F +
Sbjct: 268 SAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSF 300
>sp|Q9VDE5|PPAN_DROME Protein Peter pan OS=Drosophila melanogaster GN=ppan PE=1 SV=1
Length = 460
Score = 235 bits (599), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 118/272 (43%), Positives = 178/272 (65%), Gaps = 3/272 (1%)
Query: 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
P SFV RG + L +D R++M P TA NL+EK+ N +KDF++++ V+H +
Sbjct: 28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87
Query: 93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
+K + +V R P+GP+LTFK+H+++LA DV + D FK +PL++++ F
Sbjct: 88 NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSG 147
Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
+HLKL FQN+FP+I++ TV + T +R VL +YN DTKL++ RHYS+++ PVG+ R
Sbjct: 148 DGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLKR 207
Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEA-DDEAATVTLVSDL-GRVNRASTKS 270
++K V+ VP+L +V DFVTK GY SESEA DDE + V L L + N KS
Sbjct: 208 AVQKIVKG-TVPNLGKCNEVVDFVTKDGYASESEAEDDEQSHVVLAQTLKSKGNLEDKKS 266
Query: 271 AVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
++KL EIGPR+T+QLIK+EEGL +G +++ ++
Sbjct: 267 SIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDH 298
>sp|Q54N44|PPAN_DICDI Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3
SV=1
Length = 426
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 181/285 (63%), Gaps = 15/285 (5%)
Query: 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLM 91
I KS V+ RG +++L + R++M P+TA L+E N KDF+N+A GV+H +
Sbjct: 45 ISKSIVYKRGDCNKGIKKLVKEFRQVMEPYTATKLQETSDNTTKDFVNIAAHYGVSHLVG 104
Query: 92 LSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFG 151
S T+ Y+ +AR P+GPT TFKI EYS DVA++++RP + + SPL+VL+GF
Sbjct: 105 FSSTDIGSYMAMARLPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFT 164
Query: 152 TGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS 211
G HL++ M Q++FP+I++ T+KLSTC+R+VL NYNK+T ++FRHY+I++ VGV+
Sbjct: 165 RGTPHLEMVQNMVQSLFPSINVYTLKLSTCKRVVLFNYNKETDNVEFRHYAIKVSNVGVN 224
Query: 212 RRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADD-EAATVTLVSDL---------- 260
R +++ +QS ++PD+ +L D+SD+V +ES+ +D V L S +
Sbjct: 225 RSIKRIIQS-KIPDISNLGDISDYVMNGLGATESDYEDANDGQVELSSKMINSKAKNIKL 283
Query: 261 ---GRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
G + K A+KL+EIGPRM L L+KVE+ L G +++ +Y
Sbjct: 284 ERKGLDINTTQKRAIKLEEIGPRMNLSLLKVEDDLYKGEVLYHQY 328
>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2
Length = 389
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 182/317 (57%), Gaps = 27/317 (8%)
Query: 11 GFVKSFVKKK-QPTVDHITGDKIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTALNLK 67
G K VKK+ D I IPKS V G ++ L L DLR +M PHTA+ LK
Sbjct: 3 GIGKKRVKKRTHLKADPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLK 62
Query: 68 EKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQ 127
E+K N +KD+L +AGP+GVTH L+LS+T++ LR+ R P+GP+L F+IHEY L DV +
Sbjct: 63 ERKANKIKDYLTMAGPLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRR 122
Query: 128 SQLRPRCPQDLFKTSPLIVLSGFGTGDQ----HLKLTTIMFQNIFPAIDINTVKLSTCQR 183
Q P+ P F T PL+V++ F H L T FQN+FP I + +++ +R
Sbjct: 123 LQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTNINSVKR 182
Query: 184 IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFVTK- 238
++LLN +D ID RH+ I +PVG+SR +R ++ + +PDL +++D+SD+V
Sbjct: 183 VLLLNR-RDDGYIDLRHFIISTKPVGISRPIRHLLKGEKKDSDIPDLHNVRDISDYVLHG 241
Query: 239 ---AGYGSESEADDEAATVTL---VSDLGRVNRAST-------KSAVKLQEIGPRMTLQL 285
+G S+SE +E ATV + V N S + A+KL EIGPRMTL+L
Sbjct: 242 DGISGAASDSEI-EEDATVEIDRPVPTKTEENLLSASQLLKPKQQAIKLIEIGPRMTLEL 300
Query: 286 IKVEEGLCSGSIIFSEY 302
IK+ E G +++ +
Sbjct: 301 IKITEDAMGGKVLYHSH 317
>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1
Length = 453
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 176/335 (52%), Gaps = 64/335 (19%)
Query: 32 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
IPKS V G+ L QL D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTH 81
Query: 89 FLMLSKTESAPY--LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
M +++E L++ARTPQGPT+TF++ +YSL D+ + RP+ D PL+
Sbjct: 82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141
Query: 146 VLSGF------GTGDQHLKLTTI---MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
VL+GF G DQ + + + MFQNIFP ++ L++ +R+ ++N +++T I
Sbjct: 142 VLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMINKDRETGEI 201
Query: 197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFVTK---AGYGSESEAD 248
RHY I ++ V +SR L++ + S VP+L +D+S + Y SESE +
Sbjct: 202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIE 261
Query: 249 DEA-------------ATVTLVSDLGRVNRAST--------------------------- 268
D+A + +L S V +
Sbjct: 262 DDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKETEEEDVEMEEPKPSENLQPTP 321
Query: 269 -KSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
K A+KL E+GPR+TL+L+K+EEG+CSG ++ E+
Sbjct: 322 RKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEF 356
>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1
Length = 453
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 175/335 (52%), Gaps = 64/335 (19%)
Query: 32 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
IPKS V G+ L QL D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81
Query: 89 FLMLSKTESAPY--LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
M +++E L++ARTPQGPT+TF++ +YSL D+ + RP+ D PL+
Sbjct: 82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141
Query: 146 VLSGFGTG------DQHLKLTTI---MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
VL+GF T DQ + + + MFQNIFP ++ L++ +RI ++N +++T I
Sbjct: 142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRIFMINKDRETGEI 201
Query: 197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFVTK---AGYGSESEAD 248
RHY I ++ V +SR L++ + S VP+L +D+S + Y SESE +
Sbjct: 202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIE 261
Query: 249 DEAATVTLVSDLGRVNRAST---------------------------------------- 268
D+A + + + + T
Sbjct: 262 DDAIVRVVDNQDVKAKHSQTSLSQKTPVKMTDNEEREKGIEEEDVEMEEPKPSENSQPTP 321
Query: 269 -KSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
K A+KL E+GPR+TL+L+K+E+G+CSG ++ E+
Sbjct: 322 RKKAIKLTELGPRLTLKLVKIEDGICSGKVLHHEF 356
>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1
Length = 295
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 262 RVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
R N +K V L EIGPR + +I + EG G +I+
Sbjct: 206 RENEDKSKDPVTLIEIGPRFVMTIINILEGSFGGPVIY 243
>sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=IMP4 PE=3 SV=2
Length = 283
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 56 KLMLPHTALNLKEKKRNN--LKDFLNVAGPMGVTHFLMLSKTESAP-YLRVARTPQGPTL 112
KL+ P T++ L R N +K+ ++ G T ++L + P L ++ P GPT
Sbjct: 101 KLLFP-TSVRLN---RGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTA 156
Query: 113 TFKIHEYSLAVDV----AQSQLRPRCPQDLFKTSPL 144
+F +H L D+ QS++ P D F T+PL
Sbjct: 157 SFSLHNVVLRHDILNAGNQSEVHPHLIFDNF-TTPL 191
>sp|Q8A9C3|PYRDB_BACTN Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM
2079 / NCTC 10582 / E50 / VPI-5482) GN=pyrD PE=3 SV=1
Length = 303
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 76 DFLNVAGPMGV-THFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC 134
DF+++A G+ L K E PY R+A TP G + + + VD Q+ PR
Sbjct: 32 DFIDIARIGGIIVKGTTLHKREGNPYPRMAETPSG--MLNAVGLQNKGVDYFVEQIYPRI 89
Query: 135 PQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQ-NIFPAIDIN 174
+T+ ++ +SG D ++K I+ + + PAI++N
Sbjct: 90 KD--IQTNMIVNVSGSAIED-YVKTAEIINELDKIPAIELN 127
>sp|Q31BA9|HEM1_PROM9 Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT
9312) GN=hemA PE=3 SV=1
Length = 436
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 44/177 (24%)
Query: 145 IVLSGFGTGDQHLKLTTIMFQNIF---PAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHY 201
IV G D+++ +++++F + P ID+ +I LN N K ID
Sbjct: 240 IVCKGLNELDENISISSLVFTSTASEEPIIDL--------AKIEKLNLNNKLKFID---- 287
Query: 202 SIRLQPVGVSRRLRKFVQSHQVP---DLRSLQDV----SDFVTKAGYGSESEADDE---- 250
+GV R + V++HQ D+ LQ+V +F K +ES ++E
Sbjct: 288 ------IGVPRNISNDVKNHQFVKSFDVDDLQEVVSRNQEFRQKIAKEAESLVEEERIIF 341
Query: 251 ---AATVTLV-------SDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSI 297
A++ V SDL + + + A L +GP + + KV E L G I
Sbjct: 342 LEWWASLEAVPVINKLRSDLELIRKEELQKA--LSRMGPDFSARERKVVEALTKGII 396
>sp|P98199|AT8B2_MOUSE Probable phospholipid-transporting ATPase ID OS=Mus musculus
GN=Atp8b2 PE=2 SV=2
Length = 1209
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 244 ESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKV 288
++++ DE A VT + G V R+ T + + E+G +T QL+ +
Sbjct: 509 KAQSPDEGALVTAARNFGFVFRSRTPKTITVHELGTAITYQLLAI 553
>sp|Q6FNN7|IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1
Length = 288
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 15/166 (9%)
Query: 74 LKDFLNVAGPMGVTHFLMLSKTESAPY-LRVARTPQGPTLTFKIHEYSLAVDV----AQS 128
+ D ++ G T ++L + P L V+ P GPT F +H L D+ QS
Sbjct: 122 MADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNRGNQS 181
Query: 129 QLRPRCPQDLFKTSPL------IVLSGFGTGDQHLKLTTIMFQNIFPAIDINT---VKLS 179
++ P D F T+PL I+ + F G + I F N I + V+
Sbjct: 182 EVNPHLIFDNF-TTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFISVRQHVYVRTK 240
Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPD 225
+ + + +L + R ++ + V +LR+FV++ D
Sbjct: 241 DGVEMAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFVRTANRKD 286
>sp|P98198|AT8B2_HUMAN Probable phospholipid-transporting ATPase ID OS=Homo sapiens
GN=ATP8B2 PE=2 SV=2
Length = 1209
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 244 ESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKV 288
++++ DE A VT + G V R+ T + + E+G +T QL+ +
Sbjct: 509 KAQSPDEGALVTAARNFGFVFRSRTPKTITVHEMGTAITYQLLAI 553
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,734,589
Number of Sequences: 539616
Number of extensions: 4406296
Number of successful extensions: 9997
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9962
Number of HSP's gapped (non-prelim): 25
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)