Query 020678
Match_columns 323
No_of_seqs 142 out of 709
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2963 RNA-binding protein re 100.0 6.3E-83 1.4E-87 600.0 24.6 300 14-313 7-324 (405)
2 KOG2971 RNA-binding protein re 100.0 3.9E-45 8.5E-50 332.1 16.3 209 32-314 49-260 (299)
3 COG5154 BRX1 RNA-binding prote 100.0 1.2E-41 2.6E-46 302.5 15.1 212 31-311 29-243 (283)
4 PF04427 Brix: Brix domain; I 100.0 7E-42 1.5E-46 304.8 8.5 157 37-203 1-160 (191)
5 KOG2781 U3 small nucleolar rib 100.0 2.7E-36 5.7E-41 273.5 19.6 195 30-305 80-280 (290)
6 KOG2780 Ribosome biogenesis pr 100.0 3E-36 6.6E-41 276.1 16.1 197 31-306 95-292 (302)
7 smart00879 Brix Brix domain. T 100.0 2.1E-33 4.6E-38 246.7 19.4 159 36-205 1-162 (180)
8 KOG3031 Protein required for b 99.9 5.3E-26 1.2E-30 210.0 8.8 182 16-209 11-204 (307)
9 COG2136 IMP4 Predicted exosome 99.8 1.1E-18 2.3E-23 156.5 16.9 181 32-292 1-188 (191)
10 PRK03972 ribosomal biogenesis 99.7 8.3E-16 1.8E-20 139.0 13.3 125 35-170 2-132 (208)
11 COG5106 RPF2 Uncharacterized c 99.6 5E-15 1.1E-19 135.1 6.8 186 5-204 3-206 (316)
12 PRK00933 ribosomal biogenesis 94.8 0.18 4E-06 44.6 8.6 75 36-117 2-77 (165)
13 PRK03972 ribosomal biogenesis 30.3 3.1E+02 0.0067 25.3 8.2 78 30-116 103-187 (208)
14 PF05508 Ran-binding: RanGTP-b 29.0 34 0.00074 33.2 1.8 35 274-308 186-227 (302)
15 PF15210 SFTA2: Surfactant-ass 28.3 30 0.00065 25.2 1.0 22 277-300 1-22 (59)
16 COG5475 Uncharacterized small 22.4 57 0.0012 23.9 1.5 26 270-300 9-34 (60)
No 1
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-83 Score=599.98 Aligned_cols=300 Identities=52% Similarity=0.825 Sum_probs=280.1
Q ss_pred hhhhhhcCCCCCCCcCCCCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEE
Q 020678 14 KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLS 93 (323)
Q Consensus 14 ~~k~~~~~~~~~~~~~~~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs 93 (323)
++++++......+.++...|.++|+++|-.+..+++|..|||+||+||||.+||++|.|.||||+.+|+++|+|||++|+
T Consensus 7 kK~~~aq~~~~~e~~i~~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~ls 86 (405)
T KOG2963|consen 7 KKRTHAQFTPEQEIEIAKSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLS 86 (405)
T ss_pred hhhhhhhcCccchhhcccCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEe
Confidence 34445556667778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEeCCCCCeEEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCc-hhhHHHHHHHhhcCCCCC
Q 020678 94 KTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAID 172 (323)
Q Consensus 94 ~~~k~~~L~I~rlP~GPTl~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~-~~lkli~~mfq~mFp~~~ 172 (323)
.++...+|+|+|+|.|||++|+|..|++.+||...+|+|+++...|+++||||||||++.. +|++++.+|||+|||+++
T Consensus 87 kt~~nlslki~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsIn 166 (405)
T KOG2963|consen 87 KTETNLSLKIARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSIN 166 (405)
T ss_pred cccCceeEEEEecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcC
Confidence 9999999999999999999999999999999999999999998889999999999999986 799999999999999999
Q ss_pred CCcccCCCCCEEEEEEeecCCCeEEEEEEEEEeecccchhhhHhhhhccC----CCCCccccchhHHhhhcC-CCCCCcc
Q 020678 173 INTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFVTKAG-YGSESEA 247 (323)
Q Consensus 173 ~~~~~l~~~~RVv~f~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~----~~~l~~~~dis~~~~~~~-~~s~se~ 247 (323)
+++++|..|+||++++|+.+++.|.||||.|.++++|+||+||+|+++++ +|||++++|||||+.+++ |+||||.
T Consensus 167 v~tvnlntikRcllinyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~ 246 (405)
T KOG2963|consen 167 VATVNLNTIKRCLLINYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEI 246 (405)
T ss_pred cceeeccceeEEEEEecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999875 599999999999999987 9999999
Q ss_pred ccccce-e----------eeeccc-ccccccCCcceeEEEEeCCcceeeEeEeecccCccceeeeecccchHHHHHhh
Q 020678 248 DDEAAT-V----------TLVSDL-GRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFH 313 (323)
Q Consensus 248 e~~~~~-v----------~~~~~~-~~~~~~~~~~~v~L~EIGPR~tL~LikI~~G~~~G~vly~~~v~kt~~~~~~~ 313 (323)
||++.+ | +||++. ++++...++++|+|+||||||||+|+|||||+|+|+||||+||.||++++...
T Consensus 247 e~d~~~~i~~~~~~~~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eEi~~l 324 (405)
T KOG2963|consen 247 EDDATVRIVDNQDVKEEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEEIKAL 324 (405)
T ss_pred ccccceEEeccccchhhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCHHHHHHH
Confidence 886553 2 256654 77888888999999999999999999999999999999999999999999854
No 2
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-45 Score=332.06 Aligned_cols=209 Identities=23% Similarity=0.368 Sum_probs=189.8
Q ss_pred CCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEE-EecCCCCcEEEEeCCCCC
Q 020678 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML-SKTESAPYLRVARTPQGP 110 (323)
Q Consensus 32 ~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~f-s~~~k~~~L~I~rlP~GP 110 (323)
.-++||++++.++-+.++||+|+..| +||+....+..++..+-.+.++|...+|+.+++| ++.++.+||||+..|+||
T Consensus 49 K~rvlv~ssRgis~R~RhLm~di~~L-lph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~Gp 127 (299)
T KOG2971|consen 49 KERVLVLSSRGISFRTRHLMKDISSL-LPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGP 127 (299)
T ss_pred ceeEEEEecCCchHHHHHHHHHHHHh-cccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCC
Confidence 34689999888999999999999999 6999988888877789999999999999999999 555555999999999999
Q ss_pred eEEEEEeeeeehhhhhhhcCCCCCCCCCCC-CccEEEecC-CCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEE
Q 020678 111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSG-FGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 188 (323)
Q Consensus 111 Tl~F~I~n~~~~~di~~~~k~~~~~~~~~~-s~PlLIfng-F~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~ 188 (323)
|+.|.|+|.+||.|+..+ |||++ ++|+|.|+. |++ .+||++++++|++.|..|+.++.+.+++|||++|+
T Consensus 128 SvkFlv~n~hTM~Elkmt-------gN~lkgsrplLsFd~~Fd~-~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fs 199 (299)
T KOG2971|consen 128 SVKFLVHNVHTMAELKMT-------GNCLKGSRPLLSFDKAFDE-LPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFS 199 (299)
T ss_pred ceEEehhhhhhHHHhCCc-------cccccCCcceeeccccccc-chHHHHHHHHHHHHcCCCCCCcccCCccceEEEEE
Confidence 999999999999999987 99986 999999999 555 68999999999999999999999999999999999
Q ss_pred eecCCCeEEEEEEEEEeecccchhhhHhhhhccCCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccCC
Q 020678 189 YNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRAST 268 (323)
Q Consensus 189 ~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~~~l~~~~dis~~~~~~~~~s~se~e~~~~~v~~~~~~~~~~~~~~ 268 (323)
+ .||.||||+|+|.. +|
T Consensus 200 i--~D~~IWfRnyqI~~-----------------------------------------~e-------------------- 216 (299)
T KOG2971|consen 200 I--LDGKIWFRNYQISE-----------------------------------------EE-------------------- 216 (299)
T ss_pred E--ecCeEEEEEeEecc-----------------------------------------cc--------------------
Confidence 8 88999999999952 12
Q ss_pred cceeEEEEeCCcceeeEeEeecccCccceeeeecccchHHHHHhhh
Q 020678 269 KSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFHF 314 (323)
Q Consensus 269 ~~~v~L~EIGPR~tL~LikI~~G~~~G~vly~~~v~kt~~~~~~~~ 314 (323)
...|+||||||+|.+++|.+|+|+|.+||.+-.+-++.|++...
T Consensus 217 --d~~L~EiGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~ 260 (299)
T KOG2971|consen 217 --DKTLIEIGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVI 260 (299)
T ss_pred --CcceeeeccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHH
Confidence 26799999999999999999999999999999888999988553
No 3
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-41 Score=302.52 Aligned_cols=212 Identities=25% Similarity=0.389 Sum_probs=187.4
Q ss_pred CCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecC-CCCcEEEEeCCCC
Q 020678 31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTE-SAPYLRVARTPQG 109 (323)
Q Consensus 31 ~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~-k~~~L~I~rlP~G 109 (323)
+..+++|++++.++-+++|||+||..| .||+.++.|+.-+..+.++.++|..++|+++++|..++ ..+|||+++.|+|
T Consensus 29 ~kq~~lilSsRGvsyr~RHL~~Dls~l-~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnG 107 (283)
T COG5154 29 PKQTSLILSSRGVSYRIRHLMKDLSRL-VPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNG 107 (283)
T ss_pred ccceEEEEecCCchHHHHHHHHHHHHh-CcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCC
Confidence 345789999888999999999999999 69998888888777899999999999999999995544 4599999999999
Q ss_pred CeEEEEEeeeeehhhhhhhcCCCCCCCCCCC-CccEEEecC-CCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEE
Q 020678 110 PTLTFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSG-FGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLL 187 (323)
Q Consensus 110 PTl~F~I~n~~~~~di~~~~k~~~~~~~~~~-s~PlLIfng-F~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f 187 (323)
||+.|+|+|.+||+|+... ||+++ ++|.|.|+. |++ .|||+.+++++++.|.-|+....+.+++|||++|
T Consensus 108 ptvkF~~~NlhTMdelNft-------gN~lKgsrpvLsFdk~Fe~-~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f 179 (283)
T COG5154 108 PTVKFRMHNLHTMDELNFT-------GNSLKGSRPVLSFDKEFED-IPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCF 179 (283)
T ss_pred CeEEEEEeccchHhhcCCc-------cccccCCcceEeecccccc-chHHHHHHHHHHHhccCCCcccccccchhheEEE
Confidence 9999999999999999987 89986 999999999 666 5799999999999999988888899999999999
Q ss_pred EeecCCCeEEEEEEEEEeecccchhhhHhhhhccCCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccC
Q 020678 188 NYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRAS 267 (323)
Q Consensus 188 ~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~~~l~~~~dis~~~~~~~~~s~se~e~~~~~v~~~~~~~~~~~~~ 267 (323)
++ .||.||+|.|.|.. |.||
T Consensus 180 ~i--~DgkIWvR~YeI~r----------------------------------------e~ed------------------ 199 (283)
T COG5154 180 FI--LDGKIWVRCYEIGR----------------------------------------ENED------------------ 199 (283)
T ss_pred EE--ecCeEEEEEEeecc----------------------------------------cccc------------------
Confidence 88 89999999999963 2233
Q ss_pred CcceeEEEEeCCcceeeEeEeecccCccceeeeecccchHHHHH
Q 020678 268 TKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFC 311 (323)
Q Consensus 268 ~~~~v~L~EIGPR~tL~LikI~~G~~~G~vly~~~v~kt~~~~~ 311 (323)
....|+|+||||||+|.+++|.||+|+|.+||.+-..-+++|++
T Consensus 200 ~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vr 243 (283)
T COG5154 200 KSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVR 243 (283)
T ss_pred ccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHH
Confidence 11249999999999999999999999999999887666777775
No 4
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=7e-42 Score=304.76 Aligned_cols=157 Identities=33% Similarity=0.564 Sum_probs=75.7
Q ss_pred EEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCCCeEEEE
Q 020678 37 VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTFK 115 (323)
Q Consensus 37 V~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~GPTl~F~ 115 (323)
|++++++++.+++|++||+.+|.|+ +..++..+.|.+++++++|..++|+|+++|++++++ ++|||+|+|+|||++|+
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~~p~-s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~ 79 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLFPPN-SKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFS 79 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS-TT-EEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCC-eEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEE
Confidence 6889999999999999999997355 667776676799999999999999999999888875 99999999999999999
Q ss_pred EeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCc-hhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEeecCCC
Q 020678 116 IHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTK 194 (323)
Q Consensus 116 I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~-~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~~~~~d 194 (323)
|++|++++|++++.+. ..+++|+|||+||+++. ++++++++||++|||++.++.+.+.++||||+|++ ++|
T Consensus 80 I~~~~~~~~~~~~~~~------~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~--~~d 151 (191)
T PF04427_consen 80 IENYKLMKDIKSSSKR------PKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSN--QRD 151 (191)
T ss_dssp EEEEE-HHHHT-------------S---EEEEE-----------------------------------------------
T ss_pred EEeEEEhhHhcccccC------CCCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence 9999999999976431 23678999999988763 78999999999999999999999999999999987 666
Q ss_pred e-EEEEEEEE
Q 020678 195 L-IDFRHYSI 203 (323)
Q Consensus 195 ~-I~fRhY~I 203 (323)
. |||||| |
T Consensus 152 ~~I~fR~Y-i 160 (191)
T PF04427_consen 152 FVIFFRHY-I 160 (191)
T ss_dssp ----------
T ss_pred cccccccc-c
Confidence 6 999999 7
No 5
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=100.00 E-value=2.7e-36 Score=273.53 Aligned_cols=195 Identities=22% Similarity=0.401 Sum_probs=171.8
Q ss_pred CCCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCC
Q 020678 30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ 108 (323)
Q Consensus 30 ~~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~ 108 (323)
+.+||+||++++.+|+++.+|+++|+-+ +||+ .++. |.+..+..+++.|..+|+|++++++++++. ..|.|+|+|.
T Consensus 80 ~~dPKimvTTSR~PSsrL~~FaKelkLv-fPNa-qr~n-RG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPf 156 (290)
T KOG2781|consen 80 EEDPKIMVTTSRDPSSRLKMFAKELKLV-FPNA-QRLN-RGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPF 156 (290)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHhheEe-ccCh-hhhc-ccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCC
Confidence 3679999999999999999999999988 8995 4664 556699999999999999999999999998 9999999999
Q ss_pred CCeEEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEE
Q 020678 109 GPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 188 (323)
Q Consensus 109 GPTl~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~ 188 (323)
|||+.|.+.|+.+.+||+.. |.+...+|+||||||++.. +++++++|..+||.|.. ..+|||+|.
T Consensus 157 GPTa~Fsl~nvVmRhdip~~-------G~msE~~phlIfdNf~t~l--G~Rv~~iLkhLFP~pk~------ds~Rvvtf~ 221 (290)
T KOG2781|consen 157 GPTAFFSLHNVVMRHDIPDI-------GTMSEQKPHLIFDNFTTKL--GKRVKTILKHLFPVPKD------DSKRVVTFA 221 (290)
T ss_pred CCceEeeeeeeeeccccccc-------ccccccCceEEeccccchH--HHHHHHHHHHhCCCCcC------CcccEEEEe
Confidence 99999999999999999987 7788889999999999976 58999999999997643 679999765
Q ss_pred eecCCCeEEEEEEEEEeecccchhhhHhhhhccCCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccCC
Q 020678 189 YNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRAST 268 (323)
Q Consensus 189 ~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~~~l~~~~dis~~~~~~~~~s~se~e~~~~~v~~~~~~~~~~~~~~ 268 (323)
+.+|.|.||||.|... .
T Consensus 222 --N~~DyIsFRhhvy~~~-------------------------------------------------------------~ 238 (290)
T KOG2781|consen 222 --NRNDYISFRHHVYKKT-------------------------------------------------------------D 238 (290)
T ss_pred --cCCceEEEEEEEEecC-------------------------------------------------------------C
Confidence 5899999999999741 1
Q ss_pred cceeEEEEeCCcceeeEeEeecccCc---cceee--eecccc
Q 020678 269 KSAVKLQEIGPRMTLQLIKVEEGLCS---GSIIF--SEYGMC 305 (323)
Q Consensus 269 ~~~v~L~EIGPR~tL~LikI~~G~~~---G~vly--~~~v~k 305 (323)
...+.|.|+||||.|+|+.|-.|+++ +++.| +.|.+.
T Consensus 239 ~k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nT 280 (290)
T KOG2781|consen 239 GKEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNT 280 (290)
T ss_pred CceEEEeeccccceeeeeeeeecceeccccceeEEecchhcc
Confidence 13589999999999999999999986 66665 678763
No 6
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=100.00 E-value=3e-36 Score=276.12 Aligned_cols=197 Identities=21% Similarity=0.330 Sum_probs=171.1
Q ss_pred CCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCC
Q 020678 31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG 109 (323)
Q Consensus 31 ~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~G 109 (323)
..||+||+...........|+..|+.+ +||+.... +++..++.++++|...++|+++++.+.++. +.|.|+++|+|
T Consensus 95 ~spKvlITt~~~~~~~t~~~~~eL~~i-iPNs~~~~--R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~G 171 (302)
T KOG2780|consen 95 FSPKVLITTSKNPKRTTYKFASELLDI-IPNSTVKK--RDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNG 171 (302)
T ss_pred cCccEEEEcCCCCcccHHHHHHHHHHh-CCCceEEe--cCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCC
Confidence 459999999888888999999999999 89987654 557799999999999999999999866655 99999999999
Q ss_pred CeEEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEe
Q 020678 110 PTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNY 189 (323)
Q Consensus 110 PTl~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~ 189 (323)
||++|.+++|++.+|+... |....+.|.||+|||+++.+ ..|++||++|||..+ + -.++|||+||+
T Consensus 172 PT~~Fkls~~~~~kdi~k~-------g~~t~h~PElIlNNFtTrlG--~~v~r~f~sLfp~~p-~----f~gRrvvtFhn 237 (302)
T KOG2780|consen 172 PTAYFKLSNVVLTKDIKKH-------GRPTSHIPELILNNFTTRLG--MTVGRLFASLFPHDP-Q----FTGRRVVTFHN 237 (302)
T ss_pred CceEEEeecccchhhhhhc-------CCcccccchhhhhcccchhh--HHHHHHHHHhCCCCc-c----ccceeEEEEEe
Confidence 9999999999999999987 77788999999999999875 489999999999752 2 16899998877
Q ss_pred ecCCCeEEEEEEEEEeecccchhhhHhhhhccCCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccCCc
Q 020678 190 NKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTK 269 (323)
Q Consensus 190 ~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~~~l~~~~dis~~~~~~~~~s~se~e~~~~~v~~~~~~~~~~~~~~~ 269 (323)
++|.|+||||+|.++. +.
T Consensus 238 --QrD~IfFRhhRY~Fke------------------------------------------------------------e~ 255 (302)
T KOG2780|consen 238 --QRDYIFFRHHRYEFKE------------------------------------------------------------EE 255 (302)
T ss_pred --cCceEEEEEEEEeecc------------------------------------------------------------cc
Confidence 9999999999999832 01
Q ss_pred ceeEEEEeCCcceeeEeEeecccCccceeeeecccch
Q 020678 270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCI 306 (323)
Q Consensus 270 ~~v~L~EIGPR~tL~LikI~~G~~~G~vly~~~v~kt 306 (323)
..+.|+|+||||||+|.++++|.|+....-+.|+.+.
T Consensus 256 ~kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~~ 292 (302)
T KOG2780|consen 256 IKVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHKK 292 (302)
T ss_pred cccchhhcCCceeeeehhhhhccccccceeeeeeecc
Confidence 3688999999999999999999998655555666665
No 7
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=100.00 E-value=2.1e-33 Score=246.74 Aligned_cols=159 Identities=29% Similarity=0.460 Sum_probs=133.1
Q ss_pred EEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccC-CCcEEEEEEec-CCC-CcEEEEeCCCCCeE
Q 020678 36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPM-GVTHFLMLSKT-ESA-PYLRVARTPQGPTL 112 (323)
Q Consensus 36 lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~-~~T~li~fs~~-~k~-~~L~I~rlP~GPTl 112 (323)
||++++++++.+++|++||+.++.|+++ . .++++.+.++.+.|... +++++++++.+ +++ .+|||+++|+|||+
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~-~--~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l 77 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTK-I--NRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL 77 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEe-e--cccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence 5889999999999999999999645543 3 34556777777776665 78788888664 444 99999999999999
Q ss_pred EEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEeecC
Q 020678 113 TFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKD 192 (323)
Q Consensus 113 ~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~~~~ 192 (323)
+|.|.++.+.+|+...+.. +...+++|+|||+||+++.+ +++++||++|||.+.+..+++++++|||+|++ +
T Consensus 78 ~f~i~~v~~~~~~~~~~~~----~~~~~~~P~li~~~~~~~~~--~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~--~ 149 (180)
T smart00879 78 DFKILNVSLRKELKGFKTG----NCLTGSRPLLIFNNFFTELG--KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSN--Q 149 (180)
T ss_pred EEEEECcccHhhhhhhhcC----CCcCCCccEEEECCCCCchH--HHHHHHHHHHCCCCCccccccCCCCEEEEEEe--c
Confidence 9999999999999975331 22356899999999988753 89999999999999999999999999999987 6
Q ss_pred CCeEEEEEEEEEe
Q 020678 193 TKLIDFRHYSIRL 205 (323)
Q Consensus 193 ~d~I~fRhY~I~~ 205 (323)
+|.||||||.|.+
T Consensus 150 ~~~I~~R~y~i~~ 162 (180)
T smart00879 150 DDYIFFRHYRIKF 162 (180)
T ss_pred CCEEEEEEEEEEc
Confidence 6899999999974
No 8
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=5.3e-26 Score=210.02 Aligned_cols=182 Identities=18% Similarity=0.275 Sum_probs=157.2
Q ss_pred hhhhcCCCCCCCcCCCCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHh------hcccCCCcEE
Q 020678 16 FVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLN------VAGPMGVTHF 89 (323)
Q Consensus 16 k~~~~~~~~~~~~~~~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~------~a~~~~~T~l 89 (323)
+.+++...++++.+++....+++.+..++..+.+.|.|+..+..|.+. . ..++|.+.+|.+ .+.+++|+-+
T Consensus 11 ~~kr~l~kr~~klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i-~--~~rkN~i~pFEd~ssleffseK~D~slf 87 (307)
T KOG3031|consen 11 RAKRALVKREPKLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEI-R--YNRKNNIHPFEDPSSLEFFSEKNDCSLF 87 (307)
T ss_pred hhHHHHHhhchhhchhhhhhhccCchhhchHHHHHHHHHHHhccCcee-e--eccCCCcccCCCCchHHHHhhhhhhhhh
Confidence 345557778889999999999999999999999999999999999965 4 467889999865 5788999666
Q ss_pred EEEEecCCC-CcEEEEeCCCCCe---EEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecC--CCCCchhhHHHHHH
Q 020678 90 LMLSKTESA-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG--FGTGDQHLKLTTIM 163 (323)
Q Consensus 90 i~fs~~~k~-~~L~I~rlP~GPT---l~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfng--F~t~~~~lkli~~m 163 (323)
++.++++++ +||+|||++++-. ++|+|+||.+.+|+..+ +...+++|+|+|+| |.+. +.+++++++
T Consensus 88 v~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~-------k~~~gtKP~l~f~G~~f~~~-~~~krlknL 159 (307)
T KOG3031|consen 88 VLGSHSKKRPNNLVIGRTFDYEVLDMIELGIENYKSLSDFKAA-------KITEGTKPMLIFQGAVFDQH-PEYKRLKNL 159 (307)
T ss_pred hhccccccCCCceEEEEecCchhhHHHHHhhhhhhhhhhhhcc-------CCCCCCCceEEEecchhccC-hHHHHHHHH
Confidence 666888888 9999999999998 59999999999999987 34567999999999 6664 579999999
Q ss_pred HhhcCCCCCCCcccCCCCCEEEEEEeecCCCeEEEEEEEEEeeccc
Q 020678 164 FQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVG 209 (323)
Q Consensus 164 fq~mFp~~~~~~~~l~~~~RVv~f~~~~~~d~I~fRhY~I~~~~~g 209 (323)
|.++|.++.++.+.|.++++|+.|+... +..|+||||.+..++||
T Consensus 160 ~vDfFrge~vd~v~l~Gl~~v~vfta~~-~~~v~~r~Y~lklkKs~ 204 (307)
T KOG3031|consen 160 FVDFFRGEKVDKVRLAGLEYVIVFTATE-ETNVLFRVYRLKLKKSG 204 (307)
T ss_pred HHHHHcCCcccceeeccccEEEEEEeec-Cceeeeeeeeeeeeecc
Confidence 9999999999999999999999988643 33599999999987654
No 9
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=99.81 E-value=1.1e-18 Score=156.52 Aligned_cols=181 Identities=19% Similarity=0.320 Sum_probs=151.5
Q ss_pred CCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeC-CCC
Q 020678 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART-PQG 109 (323)
Q Consensus 32 ~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rl-P~G 109 (323)
.|+.+||+++++|.++++|++||..+ +|++.... +.+..+.++.+.|...|.++++++++.++. ..|.+.++ |.|
T Consensus 1 ~~~~liTTSRkPS~Rtr~Fak~L~~~-lp~~~~~~--rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~ 77 (191)
T COG2136 1 MPKMLLTTSRKPSRRTRSFAKDLSRV-LPNAYFLR--RGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEG 77 (191)
T ss_pred CCcEEEEecCCccHHHHHHHHHHHHh-CCcceEEe--cCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCC
Confidence 38999999999999999999999999 79987533 346689999999999999999999999988 99999999 999
Q ss_pred CeEEEEEeeeeehhhhhhhcCCCCCCCC-CCCCccEEEecCCCCCchhhHHHHHHHhhc----CCCCCCCcccCCCCCEE
Q 020678 110 PTLTFKIHEYSLAVDVAQSQLRPRCPQD-LFKTSPLIVLSGFGTGDQHLKLTTIMFQNI----FPAIDINTVKLSTCQRI 184 (323)
Q Consensus 110 PTl~F~I~n~~~~~di~~~~k~~~~~~~-~~~s~PlLIfngF~t~~~~lkli~~mfq~m----Fp~~~~~~~~l~~~~RV 184 (323)
|++.|.+.++++.+++... +. .-.+-|++|+++|.+... ...+.++|+.+ |++.. .. ....|
T Consensus 78 ~~~~f~l~~v~l~re~~~~-------~~~~~~~~~~~I~~~~~~~~g-~~~~~~~~~~~~~~~f~~~~----~~-~~~~v 144 (191)
T COG2136 78 LTFSFKLSGVKLRREIPVL-------GPKSRLHGPELIFNNFTTLLG-FLKVAEAFSELLLVKFVPNP----AW-EHELV 144 (191)
T ss_pred ceEEEEEecceEEEecccc-------CCcccCCCCceeeeccccccc-chhhHHHHHhhcccccccCc----cc-ceeee
Confidence 9999999999999999986 33 335789999999999864 47889999999 76531 11 34566
Q ss_pred EEEEeecCCCeEEEEEEEEEeecccchhhhHhhhhccCCCCCccccchhHHhhhcCCCCCCccccccceeeeeccccccc
Q 020678 185 VLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVN 264 (323)
Q Consensus 185 v~f~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~~~l~~~~dis~~~~~~~~~s~se~e~~~~~v~~~~~~~~~~ 264 (323)
+.+ ..+++.+.+|.|.....
T Consensus 145 ~~~--~~~~~f~~~~~~~~~~~---------------------------------------------------------- 164 (191)
T COG2136 145 ATG--ANKGDFKSLRRHRRVFE---------------------------------------------------------- 164 (191)
T ss_pred eec--cccceEEEEEeeeeEee----------------------------------------------------------
Confidence 655 44888999988877641
Q ss_pred ccCCcceeEEEEeCCcceeeEeEeeccc
Q 020678 265 RASTKSAVKLQEIGPRMTLQLIKVEEGL 292 (323)
Q Consensus 265 ~~~~~~~v~L~EIGPR~tL~LikI~~G~ 292 (323)
...+++.|+||||+|++-.+++|.
T Consensus 165 ----~~~~~~~~vgp~~~~r~~~~~~g~ 188 (191)
T COG2136 165 ----EDGIGLEEVGPRLTLRLWRMEDGR 188 (191)
T ss_pred ----eeeeeEEEeCceeeeehhhhhhcc
Confidence 135899999999999999999984
No 10
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.67 E-value=8.3e-16 Score=138.98 Aligned_cols=125 Identities=14% Similarity=0.253 Sum_probs=104.3
Q ss_pred EEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCC---C
Q 020678 35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG---P 110 (323)
Q Consensus 35 ~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~G---P 110 (323)
++||++.++|+.+++|++||..+ +||+.. + .|++..++++++.|...|+|+++++++.++. +.|.|++||+| |
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v-~Pns~~-i-~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP 78 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERV-FPNSLY-L-TRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY 78 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHh-CCCCEE-E-ecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence 58999999999999999999999 799753 3 4678899999999999999999999999888 99999999855 5
Q ss_pred eEEEEEeeeeehhhhh--hhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHhhcCCC
Q 020678 111 TLTFKIHEYSLAVDVA--QSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPA 170 (323)
Q Consensus 111 Tl~F~I~n~~~~~di~--~~~k~~~~~~~~~~s~PlLIfngF~t~~~~lkli~~mfq~mFp~ 170 (323)
|++|+|+|+.+.+|+. .. +....+.|++|.++|.+...+.+.. ..+..-+..
T Consensus 79 Ta~FkLsnV~l~~ei~~~~~-------~~~s~~~p~iItts~kt~~g~~~~A-k~lA~eLgi 132 (208)
T PRK03972 79 LGYLYLHGIKLQREMGFRNL-------RPIREDMPLVITTAKRVGLDHMAFA-QVFAELTGG 132 (208)
T ss_pred eEEEEEccEEEHHHcccCCC-------CCccccccEEEEcCCCCCHHHHHHH-HHHHHHhCC
Confidence 9999999999999994 34 5567799999999999986543333 334444443
No 11
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=5e-15 Score=135.06 Aligned_cols=186 Identities=14% Similarity=0.190 Sum_probs=147.2
Q ss_pred cCccCchhhhhhhhhcCCCCCCCcCCCCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHh-----
Q 020678 5 RNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLN----- 79 (323)
Q Consensus 5 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~----- 79 (323)
|.-|.+-.|. ++++..++|+.+++....+++.+-..++.+-..+-|+..+..|... ..-++|+|.+|.+
T Consensus 3 r~vkpkNaR~---kRAl~kRepklve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~i---~f~rkn~ihpfEd~SplE 76 (316)
T COG5106 3 RAVKPKNARV---KRALHKREPKLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEI---GFIRKNTIHPFEDTSPLE 76 (316)
T ss_pred cccCCcchHH---HHHHHhcCchhhhhhhheEeccCcccchhhhhhhcchhhhccchhh---ccccCCcccccccCCHHH
Confidence 3334444444 4668999999999999999999988899999999999999999854 3467899998876
Q ss_pred -hcccCCCcEEEEEEecCCC-CcEEEEeCCCCCe---EEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecC--CCC
Q 020678 80 -VAGPMGVTHFLMLSKTESA-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG--FGT 152 (323)
Q Consensus 80 -~a~~~~~T~li~fs~~~k~-~~L~I~rlP~GPT---l~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfng--F~t 152 (323)
++.+++|.-..+|++.+++ +||.|+|..+--. ++|.|.+|.+..|+..+ +...+.+|.++|.| |.+
T Consensus 77 ffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~-------~~~~g~Kpmv~fQg~~fd~ 149 (316)
T COG5106 77 FFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECA-------GPELGMKPMVVFQGINFDA 149 (316)
T ss_pred HHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhcc-------CCccCCceEEEEecccccc
Confidence 4788999888888666666 9999999887766 58999999999999876 67788999999999 555
Q ss_pred CchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEeec--CCC----eEEEEEEEEE
Q 020678 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNK--DTK----LIDFRHYSIR 204 (323)
Q Consensus 153 ~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~~~--~~d----~I~fRhY~I~ 204 (323)
.|.+++|+++|-++|.+..-+.....+..+||..+-.. ++. .+.||.|...
T Consensus 150 -hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k 206 (316)
T COG5106 150 -HPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTK 206 (316)
T ss_pred -chHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecc
Confidence 46899999999999998766555556778888765311 121 2678888765
No 12
>PRK00933 ribosomal biogenesis protein; Validated
Probab=94.77 E-value=0.18 Score=44.57 Aligned_cols=75 Identities=13% Similarity=0.270 Sum_probs=59.3
Q ss_pred EEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCCCeEEE
Q 020678 36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTF 114 (323)
Q Consensus 36 lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~GPTl~F 114 (323)
+||++.+++..+.+++++|...+ ++.. -.|++.+++++.+.|.. .+++++++.++. ..|.|...-..+.+.+
T Consensus 2 IITTSrkPs~~t~~fAkeLa~~l--n~~y--v~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~ 74 (165)
T PRK00933 2 IITTSRKPSQRTRSLVKDLARFL--NCKY--VNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSY 74 (165)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh--CCEE--EccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEE
Confidence 78899999999999999999994 6543 45778899998765543 488999998877 8999999776666666
Q ss_pred EEe
Q 020678 115 KIH 117 (323)
Q Consensus 115 ~I~ 117 (323)
.+.
T Consensus 75 ~~~ 77 (165)
T PRK00933 75 RLS 77 (165)
T ss_pred EEE
Confidence 553
No 13
>PRK03972 ribosomal biogenesis protein; Validated
Probab=30.33 E-value=3.1e+02 Score=25.30 Aligned_cols=78 Identities=13% Similarity=0.197 Sum_probs=45.1
Q ss_pred CCCCcEEEEccCCCChHHHHHHHHHhhcc-CCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCCCcEEEEe---
Q 020678 30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLM-LPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVAR--- 105 (323)
Q Consensus 30 ~~~pk~lV~~~g~~s~~~~~L~kDLr~lm-~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~~~L~I~r--- 105 (323)
+..| -+|+++.+++......++.+...+ .|+. .|++.++..+. ...+...++++..+-.+..+.+-|
T Consensus 103 ~~~p-~iItts~kt~~g~~~~Ak~lA~eLgi~yV-----~R~k~Sl~~L~---~~~~~d~vLVV~~~~~~~~~~~~~~~~ 173 (208)
T PRK03972 103 EDMP-LVITTAKRVGLDHMAFAQVFAELTGGKFV-----PRGGKSLQDIA---DKYNTDVLGVIERHPRGMAVNFYRLDV 173 (208)
T ss_pred cccc-EEEEcCCCCCHHHHHHHHHHHHHhCCcee-----CcCCcCHHHHH---hhhcCceEEEEecCCCceEEEEEEecc
Confidence 3445 367777777776666666665542 2332 35666676543 445666777775554444555544
Q ss_pred ---CCCCCeEEEEE
Q 020678 106 ---TPQGPTLTFKI 116 (323)
Q Consensus 106 ---lP~GPTl~F~I 116 (323)
-|-||.+..++
T Consensus 174 ~~~~~~~~~~~~~~ 187 (208)
T PRK03972 174 TKERPVGPLIFVKI 187 (208)
T ss_pred ccccccCCcEEEEE
Confidence 36677766555
No 14
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=28.95 E-value=34 Score=33.21 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=26.9
Q ss_pred EEEeCCcceeeEeEeecccCc-------cceeeeecccchHH
Q 020678 274 LQEIGPRMTLQLIKVEEGLCS-------GSIIFSEYGMCIFY 308 (323)
Q Consensus 274 L~EIGPR~tL~LikI~~G~~~-------G~vly~~~v~kt~~ 308 (323)
=+-|||-|+|.++.|+.|-.. -.+.|.+-++|..-
T Consensus 186 ~~qvGP~F~lslY~lF~~~sr~~~~~~~~~~tWKE~~~ka~v 227 (302)
T PF05508_consen 186 PVQVGPTFTLSLYMLFYGHSRPKYEEGLRKITWKEVMHKARV 227 (302)
T ss_pred ccccCCcEEEEeeheecccccccccccccCcceeeeccceEE
Confidence 355799999999999987753 37889887776543
No 15
>PF15210 SFTA2: Surfactant-associated protein 2
Probab=28.35 E-value=30 Score=25.17 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=13.8
Q ss_pred eCCcceeeEeEeecccCccceeee
Q 020678 277 IGPRMTLQLIKVEEGLCSGSIIFS 300 (323)
Q Consensus 277 IGPR~tL~LikI~~G~~~G~vly~ 300 (323)
.||+|||+|- +.+ .|-++.-|.
T Consensus 1 ~GPgmtl~lK-Lk~-sfl~n~S~~ 22 (59)
T PF15210_consen 1 TGPGMTLQLK-LKD-SFLANSSYD 22 (59)
T ss_pred CCCceEEEEE-ehh-hhccccchh
Confidence 3999999984 443 344555443
No 16
>COG5475 Uncharacterized small protein [Function unknown]
Probab=22.39 E-value=57 Score=23.92 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=18.6
Q ss_pred ceeEEEEeCCcceeeEeEeecccCccceeee
Q 020678 270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFS 300 (323)
Q Consensus 270 ~~v~L~EIGPR~tL~LikI~~G~~~G~vly~ 300 (323)
.-|.|.|=|||||. -++.-+|.+.-|
T Consensus 9 dvV~lKsGGP~Mtv-----s~~ss~Gmy~C~ 34 (60)
T COG5475 9 DVVTLKSGGPRMTV-----SGYSSDGMYECR 34 (60)
T ss_pred cEEEeecCCceEEE-----eccccCCeEEEE
Confidence 45899999999985 345555766643
Done!