Query 020678
Match_columns 323
No_of_seqs 142 out of 709
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:35:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 99.9 8.3E-22 2.8E-26 178.8 12.4 131 30-173 31-167 (217)
2 1w94_A MIL, probable BRIX-doma 99.0 3.7E-09 1.3E-13 91.2 10.9 85 34-127 1-86 (156)
3 1otr_A Protein CUE2; protein-p 11.5 46 0.0016 22.5 -0.2 13 162-174 9-21 (49)
4 2kkc_A Sequestosome-1; P62, PB 8.9 5E+02 0.017 19.9 4.9 34 156-198 43-77 (102)
5 1kdx_A CBP; complex (transcrip 7.7 1.9E+02 0.0066 21.5 2.0 18 158-175 17-34 (81)
6 2l82_A Designed protein OR32; 7.3 1.9E+02 0.0065 23.1 1.8 26 71-96 89-114 (162)
7 2ktr_A Sequestosome-1; autopha 7.0 6.6E+02 0.022 19.8 4.9 34 156-198 58-92 (117)
8 4a74_A DNA repair and recombin 6.2 5.8E+02 0.02 20.6 4.6 33 85-117 190-225 (231)
9 2vvf_A Major capsid protein P2 5.1 2.7E+02 0.0091 25.4 1.8 23 104-127 21-46 (269)
10 1uuz_A IVY, inhibitor of verte 4.9 7.9E+02 0.027 19.9 4.3 32 79-110 57-91 (137)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=99.86 E-value=8.3e-22 Score=178.83 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=116.9
Q ss_pred CCCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCC
Q 020678 30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ 108 (323)
Q Consensus 30 ~~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~ 108 (323)
...||+|||+++++++++++|++||..+ +||+.+ + .|++..++++++.|..++||+++++++.++. .+|||+++|.
T Consensus 31 ~~~pKvLITTSr~pS~r~r~fakeL~~~-lPns~~-i-~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~ 107 (217)
T 2cxh_A 31 VGGYRILVTTSRRPSPRIRSFVKDLSAT-IPGAFR-F-TRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEG 107 (217)
T ss_dssp --CCEEEEEESSSCCHHHHHHHHHHHTT-STTEEE-C-CCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHHH-CCCCEE-e-ecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCC
Confidence 3589999999999999999999999999 699753 3 3677899999999999999999999888877 9999999999
Q ss_pred C---C-eEEEEEeeeeehhhhhhhcCCCCCCCCCC-CCccEEEecCCCCCchhhHHHHHHHhhcCCCCCC
Q 020678 109 G---P-TLTFKIHEYSLAVDVAQSQLRPRCPQDLF-KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDI 173 (323)
Q Consensus 109 G---P-Tl~F~I~n~~~~~di~~~~k~~~~~~~~~-~s~PlLIfngF~t~~~~lkli~~mfq~mFp~~~~ 173 (323)
| | |++|+|+|+.+++|++.. |+++ +++|+|+ ++|+++ ++.++++||+++||.|..
T Consensus 108 G~~~P~Ta~F~I~nv~l~~ei~~~-------g~~~~~~rP~L~-~nF~t~--~g~~i~~~f~~lFp~P~~ 167 (217)
T 2cxh_A 108 PERPDNIVSFIVKGVSLSRERRWG-------LPSLRGGEVLVA-RPLDSG--VAVEFADAFVIAFHARLK 167 (217)
T ss_dssp SSCCEEEEEEEEEEEECHHHHTCC-------CCCCCSCCEEEE-EESSSS--THHHHHHHHHHHHCCBSS
T ss_pred CCCCCcEEEEEEeeEEehhhhccC-------CCccCCCCceEE-eeecCc--hHHHHHHHHHHHcCCCCC
Confidence 9 9 999999999999999987 5564 5899999 999986 578999999999998654
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=98.96 E-value=3.7e-09 Score=91.17 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=72.3
Q ss_pred cEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCCCeE
Q 020678 34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTL 112 (323)
Q Consensus 34 k~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~GPTl 112 (323)
|.+||++.++++.+.+++++|..++ ++.. + .|++..++++++.|... +++++++++. ..|.|+++|.|||+
T Consensus 1 kilITTSr~Ps~~l~~fakeLa~~l--n~~~-v-~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~ 72 (156)
T 1w94_A 1 HMLLTTSRKPSQRTRSFSQRLSRIM--GWRY-I-NRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERG 72 (156)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHHH--TCEE-C-CCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh--CCEE-E-eeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEE
Confidence 5689999999999999999999994 6542 3 46778999999877543 7777777776 89999999999999
Q ss_pred EEEEeeeeehhhhhh
Q 020678 113 TFKIHEYSLAVDVAQ 127 (323)
Q Consensus 113 ~F~I~n~~~~~di~~ 127 (323)
+|++ |+.+.+|+..
T Consensus 73 ~f~~-nv~l~~~~~~ 86 (156)
T 1w94_A 73 YILF-NPSFEMKKPE 86 (156)
T ss_dssp EEEE-EEEECSSCCC
T ss_pred EEEE-ceEEcccCcc
Confidence 9998 9999999874
No 3
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=11.50 E-value=46 Score=22.51 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=10.2
Q ss_pred HHHhhcCCCCCCC
Q 020678 162 IMFQNIFPAIDIN 174 (323)
Q Consensus 162 ~mfq~mFp~~~~~ 174 (323)
..|+.|||.....
T Consensus 9 ~~L~EMFP~~~~~ 21 (49)
T 1otr_A 9 SILMDMFPAISKS 21 (49)
T ss_dssp HHHHHHCSSSCHH
T ss_pred HHHHHHCCCCCHH
Confidence 5789999987654
No 4
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=8.86 E-value=5e+02 Score=19.94 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=22.2
Q ss_pred hhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEee-cCCCeEEE
Q 020678 156 HLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYN-KDTKLIDF 198 (323)
Q Consensus 156 ~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~~-~~~d~I~f 198 (323)
.+..+..+++++||..... .+ ++.|. .++|.|.|
T Consensus 43 s~~~L~~~V~~lFp~l~~~--------~f-~l~Y~DedGDlIti 77 (102)
T 2kkc_A 43 PCERLLSRVAVLFPALRPG--------GF-QAHYRAERGDLVAF 77 (102)
T ss_dssp HHHHHHHHHHHHCTTSCSS--------CE-EEEEECTTCCEEEE
T ss_pred cHHHHHHHHHHHccccCCC--------cE-EEEEECCCCCEEEe
Confidence 4678899999999976422 13 34554 45666753
No 5
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=7.73 E-value=1.9e+02 Score=21.52 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.2
Q ss_pred HHHHHHHhhcCCCCCCCc
Q 020678 158 KLTTIMFQNIFPAIDINT 175 (323)
Q Consensus 158 kli~~mfq~mFp~~~~~~ 175 (323)
-++..+.+.+||+|++..
T Consensus 17 hlv~Klv~aI~P~pdp~a 34 (81)
T 1kdx_A 17 HLVHKLVQAIFPTPDPAA 34 (81)
T ss_dssp HHHHHHHHHHSCCSSGGG
T ss_pred HHHHHHHHHhcCCCChhh
Confidence 488999999999987653
No 6
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=7.27 E-value=1.9e+02 Score=23.09 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=21.2
Q ss_pred CcchhhHHhhcccCCCcEEEEEEecC
Q 020678 71 RNNLKDFLNVAGPMGVTHFLMLSKTE 96 (323)
Q Consensus 71 kn~lkdf~~~a~~~~~T~li~fs~~~ 96 (323)
+.-|+||++-|...|+.-+++++..+
T Consensus 89 kewikdfieeakergvevfvvynnkd 114 (162)
T 2l82_A 89 KEWIKDFIEEAKERGVEVFVVYNNKD 114 (162)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSC
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 34699999999999998888876654
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=6.96 E-value=6.6e+02 Score=19.82 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=22.2
Q ss_pred hhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEee-cCCCeEEE
Q 020678 156 HLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYN-KDTKLIDF 198 (323)
Q Consensus 156 ~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~~-~~~d~I~f 198 (323)
.+..+..+++++||..... .+ ++.|. .++|.|.|
T Consensus 58 s~~~L~~kV~~lFp~L~~~--------~f-~l~YkDEdGDlItI 92 (117)
T 2ktr_A 58 PSERLLSRVAVLFPALRPG--------GF-QAHYRAERGDLVAF 92 (117)
T ss_dssp HHHHHHHHHHHHCTTSCSS--------CE-EEEEECTTCCEEEE
T ss_pred CHHHHHHHHHHHccccCCC--------cE-EEEEECCCCCEEEe
Confidence 4678899999999976422 13 34554 45667754
No 8
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=6.19 E-value=5.8e+02 Score=20.56 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=15.2
Q ss_pred CCcEEEEEEecCCC-CcEEEEeCCCCCe--EEEEEe
Q 020678 85 GVTHFLMLSKTESA-PYLRVARTPQGPT--LTFKIH 117 (323)
Q Consensus 85 ~~T~li~fs~~~k~-~~L~I~rlP~GPT--l~F~I~ 117 (323)
.|+.++++...+.. -.|++.+.+.||+ +.|.|.
T Consensus 190 ~~d~~l~l~~~~~~~r~l~~~K~r~~~~~~~~f~i~ 225 (231)
T 4a74_A 190 SATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSIT 225 (231)
T ss_dssp CCSEEEEEEECTTSCEEEEEESCC--CCSCEEEEEE
T ss_pred hceEEEEEEecCCCeEEEEEEeCCCCCCceEEEEEe
Confidence 34455555443332 4566666555555 355443
No 9
>2vvf_A Major capsid protein P2; double jelly-roll viral capsid, viral protein; 2.5A {Pseudoalteromonas phage PM2} PDB: 2w0c_A
Probab=5.12 E-value=2.7e+02 Score=25.41 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=15.5
Q ss_pred EeCCCCCe---EEEEEeeeeehhhhhh
Q 020678 104 ARTPQGPT---LTFKIHEYSLAVDVAQ 127 (323)
Q Consensus 104 ~rlP~GPT---l~F~I~n~~~~~di~~ 127 (323)
-++|.||| +.+.++++ +..+|..
T Consensus 21 L~lPiG~TY~~I~L~~T~~-t~a~I~~ 46 (269)
T 2vvf_A 21 IKLPIGQTYEVIDLRYSGV-TPSQIKN 46 (269)
T ss_dssp EEECSSSEEEEEEEEEESS-CGGGEEE
T ss_pred EEeccCCceEEEEEEEcCC-CHHHhee
Confidence 35699999 46776666 5566654
No 10
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=4.86 E-value=7.9e+02 Score=19.93 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=19.2
Q ss_pred hhcccCCCc--EE-EEEEecCCCCcEEEEeCCCCC
Q 020678 79 NVAGPMGVT--HF-LMLSKTESAPYLRVARTPQGP 110 (323)
Q Consensus 79 ~~a~~~~~T--~l-i~fs~~~k~~~L~I~rlP~GP 110 (323)
.+|.+++|. .| +.|+..++.-+=.+...|+++
T Consensus 57 ~~CkpHDC~~~~l~Vlfs~dk~~a~Gl~v~v~d~~ 91 (137)
T 1uuz_A 57 NSCKPHDCGNNRLLVAFRGDKSAAYGLQVSLPDEP 91 (137)
T ss_dssp EEECTTCTTTEEEEEEEETTSSCEEEEEEECCSCT
T ss_pred cccCCCCCccCeEEEEECCCcCeEEEEEEecCCCc
Confidence 479999996 23 333655565444445556664
Done!