Query 020679
Match_columns 323
No_of_seqs 153 out of 1501
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 1.5E-65 3.2E-70 454.1 28.2 267 6-300 2-268 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 6E-63 1.3E-67 437.4 28.9 281 9-300 6-289 (300)
3 COG0667 Tas Predicted oxidored 100.0 2.6E-60 5.5E-65 435.9 29.3 269 7-298 1-311 (316)
4 KOG1575 Voltage-gated shaker-l 100.0 7.7E-60 1.7E-64 425.0 28.3 283 1-305 6-334 (336)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.1E-58 2.4E-63 417.7 30.4 254 17-299 1-255 (267)
6 PRK10625 tas putative aldo-ket 100.0 2.9E-57 6.3E-62 423.1 29.7 284 7-299 1-342 (346)
7 TIGR01293 Kv_beta voltage-depe 100.0 4.6E-57 9.9E-62 416.9 29.5 264 9-294 1-316 (317)
8 PRK09912 L-glyceraldehyde 3-ph 100.0 9.4E-57 2E-61 419.2 30.7 274 4-297 10-334 (346)
9 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.1E-55 4.5E-60 397.8 30.4 261 8-299 5-265 (275)
10 PLN02587 L-galactose dehydroge 100.0 3.4E-55 7.5E-60 404.0 30.3 269 9-296 1-300 (314)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 1.9E-54 4E-59 394.1 29.9 264 9-294 1-285 (285)
12 PRK10376 putative oxidoreducta 100.0 3.2E-53 6.9E-58 386.6 29.3 266 1-297 1-289 (290)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.4E-53 9.5E-58 384.7 24.5 254 21-295 1-282 (283)
14 PRK14863 bifunctional regulato 100.0 5.2E-51 1.1E-55 371.6 21.8 251 16-292 2-278 (292)
15 COG4989 Predicted oxidoreducta 100.0 1.4E-49 3.1E-54 338.1 19.0 268 7-295 1-292 (298)
16 COG1453 Predicted oxidoreducta 100.0 1.9E-49 4.1E-54 354.9 19.9 286 7-318 1-310 (391)
17 KOG1576 Predicted oxidoreducta 100.0 2.3E-44 5E-49 308.4 19.8 264 3-286 18-311 (342)
18 KOG3023 Glutamate-cysteine lig 98.6 1.1E-07 2.3E-12 81.7 6.6 139 80-218 73-229 (285)
19 TIGR00190 thiC thiamine biosyn 90.7 12 0.00027 35.4 14.4 139 35-219 76-226 (423)
20 PRK13352 thiamine biosynthesis 89.6 17 0.00038 34.6 14.5 139 35-219 76-229 (431)
21 PF07021 MetW: Methionine bios 88.8 8.5 0.00019 32.8 11.0 100 104-220 64-170 (193)
22 PRK10558 alpha-dehydro-beta-de 86.1 11 0.00024 33.7 10.9 101 152-281 10-115 (256)
23 PRK10128 2-keto-3-deoxy-L-rham 84.5 17 0.00038 32.7 11.3 101 152-281 9-114 (267)
24 cd03316 MR_like Mandelate race 84.1 36 0.00079 31.7 15.0 147 35-216 140-298 (357)
25 PRK08392 hypothetical protein; 83.5 28 0.00062 30.0 15.9 183 36-250 14-209 (215)
26 TIGR00216 ispH_lytB (E)-4-hydr 83.3 13 0.00029 33.7 10.0 116 150-276 145-273 (280)
27 COG1748 LYS9 Saccharopine dehy 82.5 7.2 0.00016 37.1 8.3 79 36-127 79-159 (389)
28 TIGR03239 GarL 2-dehydro-3-deo 82.0 19 0.00042 32.0 10.5 97 156-281 7-108 (249)
29 PRK01045 ispH 4-hydroxy-3-meth 81.6 18 0.00039 33.1 10.3 115 151-276 146-275 (298)
30 cd03319 L-Ala-DL-Glu_epimerase 81.5 43 0.00093 30.7 14.7 150 35-220 135-290 (316)
31 PF02401 LYTB: LytB protein; 78.7 11 0.00025 34.1 8.0 107 159-276 155-274 (281)
32 TIGR02026 BchE magnesium-proto 77.9 34 0.00073 33.8 11.7 127 141-278 220-361 (497)
33 PRK12360 4-hydroxy-3-methylbut 77.7 19 0.00041 32.7 9.1 113 153-276 151-274 (281)
34 cd01965 Nitrogenase_MoFe_beta_ 77.6 43 0.00093 32.3 12.2 111 58-187 62-187 (428)
35 KOG0369 Pyruvate carboxylase [ 76.5 37 0.00079 34.6 11.1 145 35-220 42-195 (1176)
36 COG0635 HemN Coproporphyrinoge 74.5 30 0.00065 33.3 10.1 75 91-171 197-276 (416)
37 COG0159 TrpA Tryptophan syntha 73.8 68 0.0015 28.8 12.3 137 144-293 77-242 (265)
38 PRK13796 GTPase YqeH; Provisio 72.8 86 0.0019 29.6 12.7 119 35-178 56-180 (365)
39 COG0761 lytB 4-Hydroxy-3-methy 72.4 24 0.00053 31.9 8.2 119 147-276 144-277 (294)
40 TIGR02311 HpaI 2,4-dihydroxyhe 70.5 63 0.0014 28.7 10.6 99 153-281 4-108 (249)
41 PRK08609 hypothetical protein; 68.9 1.3E+02 0.0029 30.2 17.5 184 37-250 350-553 (570)
42 cd01973 Nitrogenase_VFe_beta_l 68.5 1.2E+02 0.0026 29.6 15.3 116 56-186 65-192 (454)
43 PRK07535 methyltetrahydrofolat 68.5 73 0.0016 28.5 10.6 101 97-217 24-124 (261)
44 TIGR00381 cdhD CO dehydrogenas 68.1 1.1E+02 0.0024 29.0 13.4 108 98-220 128-251 (389)
45 COG1168 MalY Bifunctional PLP- 67.9 1.1E+02 0.0024 28.9 11.8 75 35-126 40-117 (388)
46 COG3623 SgaU Putative L-xylulo 67.5 89 0.0019 27.6 10.7 73 14-90 65-155 (287)
47 PLN02444 HMP-P synthase 67.1 1.4E+02 0.0031 29.8 13.9 136 35-218 236-383 (642)
48 cd00308 enolase_like Enolase-s 66.1 44 0.00095 29.0 8.6 70 149-220 134-207 (229)
49 PRK04452 acetyl-CoA decarbonyl 64.8 1.2E+02 0.0026 28.1 12.7 96 106-218 83-184 (319)
50 PRK00087 4-hydroxy-3-methylbut 63.2 40 0.00087 34.5 8.8 113 152-275 147-270 (647)
51 PRK07094 biotin synthase; Prov 60.9 75 0.0016 29.2 9.6 122 143-279 70-204 (323)
52 cd03315 MLE_like Muconate lact 60.4 1.2E+02 0.0027 26.8 14.8 151 35-220 86-242 (265)
53 cd03322 rpsA The starvation se 57.7 1.7E+02 0.0036 27.5 15.3 144 35-218 127-274 (361)
54 PRK09284 thiamine biosynthesis 57.5 2.1E+02 0.0046 28.6 14.0 136 35-218 231-378 (607)
55 cd00739 DHPS DHPS subgroup of 56.7 1.5E+02 0.0032 26.5 10.8 106 96-217 22-128 (257)
56 cd00423 Pterin_binding Pterin 56.1 1.1E+02 0.0023 27.3 9.4 108 95-218 21-129 (258)
57 cd00740 MeTr MeTr subgroup of 55.7 1.5E+02 0.0033 26.4 11.1 105 95-218 23-128 (252)
58 COG1140 NarY Nitrate reductase 55.5 6.1 0.00013 37.0 1.2 25 158-182 263-287 (513)
59 TIGR01928 menC_lowGC/arch o-su 55.1 56 0.0012 30.2 7.7 72 147-220 210-285 (324)
60 cd03174 DRE_TIM_metallolyase D 54.8 1.1E+02 0.0025 26.8 9.4 102 96-216 17-135 (265)
61 TIGR02932 vnfK_nitrog V-contai 54.6 2.2E+02 0.0047 27.8 14.2 118 56-187 68-197 (457)
62 cd03318 MLE Muconate Lactonizi 53.0 63 0.0014 30.3 7.8 67 148-216 227-297 (365)
63 TIGR01278 DPOR_BchB light-inde 51.3 1.7E+02 0.0037 29.0 10.7 108 59-185 67-191 (511)
64 TIGR01228 hutU urocanate hydra 50.3 48 0.001 32.4 6.3 127 40-192 107-258 (545)
65 PRK15072 bifunctional D-altron 50.2 1E+02 0.0023 29.4 8.9 69 148-218 245-317 (404)
66 COG2069 CdhD CO dehydrogenase/ 50.2 2.1E+02 0.0045 26.3 11.8 103 104-220 156-262 (403)
67 cd03327 MR_like_2 Mandelate ra 50.0 73 0.0016 29.6 7.6 66 148-215 210-279 (341)
68 cd01974 Nitrogenase_MoFe_beta 49.5 2.5E+02 0.0054 27.1 14.2 116 56-186 64-191 (435)
69 PF01904 DUF72: Protein of unk 49.5 1.7E+02 0.0036 25.6 9.4 68 50-126 19-96 (230)
70 PRK05414 urocanate hydratase; 49.5 52 0.0011 32.3 6.4 126 41-192 117-267 (556)
71 PRK14017 galactonate dehydrata 49.1 1.1E+02 0.0023 29.0 8.7 68 149-218 217-288 (382)
72 PF01964 ThiC: ThiC family; I 48.9 33 0.00071 32.7 4.9 143 35-224 75-229 (420)
73 COG0422 ThiC Thiamine biosynth 48.3 2.5E+02 0.0054 26.7 15.1 139 35-219 77-227 (432)
74 PRK09058 coproporphyrinogen II 48.3 2.7E+02 0.0058 27.1 14.7 125 96-220 41-184 (449)
75 PRK05283 deoxyribose-phosphate 48.2 1.5E+02 0.0032 26.6 8.8 88 20-117 134-227 (257)
76 cd03323 D-glucarate_dehydratas 45.1 1.3E+02 0.0028 28.7 8.6 69 148-218 249-321 (395)
77 PRK10799 metal-binding protein 44.9 27 0.00059 31.0 3.7 32 42-74 200-231 (247)
78 TIGR03471 HpnJ hopanoid biosyn 44.9 2.9E+02 0.0063 26.9 11.2 125 140-279 224-362 (472)
79 TIGR02534 mucon_cyclo muconate 44.8 97 0.0021 29.1 7.7 68 149-218 227-298 (368)
80 cd07944 DRE_TIM_HOA_like 4-hyd 44.3 2.4E+02 0.0051 25.3 14.0 150 99-280 20-177 (266)
81 PF11242 DUF2774: Protein of u 44.2 32 0.00069 23.4 3.0 23 235-257 15-37 (63)
82 PRK14461 ribosomal RNA large s 43.8 1.6E+02 0.0035 27.9 8.7 97 119-220 232-352 (371)
83 cd03325 D-galactonate_dehydrat 42.6 1.6E+02 0.0034 27.5 8.7 67 148-216 215-285 (352)
84 PRK05692 hydroxymethylglutaryl 42.3 2.4E+02 0.0052 25.6 9.5 98 100-214 27-138 (287)
85 TIGR00289 conserved hypothetic 41.9 2.4E+02 0.0052 24.6 9.8 114 171-298 47-170 (222)
86 TIGR01502 B_methylAsp_ase meth 41.2 2.4E+02 0.0051 27.2 9.6 70 147-218 279-357 (408)
87 cd00405 PRAI Phosphoribosylant 40.4 2.3E+02 0.0049 24.0 10.0 41 115-174 73-113 (203)
88 PLN02489 homocysteine S-methyl 39.6 3.2E+02 0.0069 25.4 20.0 215 35-280 54-332 (335)
89 COG2089 SpsE Sialic acid synth 39.2 3.2E+02 0.007 25.4 10.6 116 35-177 89-222 (347)
90 PF01175 Urocanase: Urocanase; 39.1 78 0.0017 31.1 5.9 128 40-192 106-257 (546)
91 PRK00912 ribonuclease P protei 38.6 2.7E+02 0.0058 24.3 13.6 171 35-251 15-203 (237)
92 COG1751 Uncharacterized conser 38.2 1.1E+02 0.0024 25.1 5.7 72 35-115 13-86 (186)
93 PF06506 PrpR_N: Propionate ca 38.1 1.1E+02 0.0023 25.5 6.1 66 144-214 62-130 (176)
94 PF03102 NeuB: NeuB family; I 38.1 1.2E+02 0.0026 26.9 6.6 66 199-279 59-135 (241)
95 COG1801 Uncharacterized conser 37.7 3E+02 0.0066 24.7 10.7 97 21-127 4-115 (263)
96 cd02801 DUS_like_FMN Dihydrour 37.7 2.6E+02 0.0056 23.9 10.5 127 35-184 66-208 (231)
97 TIGR03700 mena_SCO4494 putativ 37.6 3.4E+02 0.0075 25.3 12.3 139 96-278 80-225 (351)
98 PRK12581 oxaloacetate decarbox 37.6 4.1E+02 0.0089 26.1 16.8 112 35-170 104-215 (468)
99 PRK08776 cystathionine gamma-s 37.1 3.2E+02 0.0069 26.1 9.9 74 146-220 110-186 (405)
100 cd03317 NAAAR N-acylamino acid 36.7 1.7E+02 0.0037 27.2 7.9 69 148-218 216-288 (354)
101 TIGR00126 deoC deoxyribose-pho 36.6 2.3E+02 0.0051 24.5 8.1 71 35-115 131-205 (211)
102 TIGR01496 DHPS dihydropteroate 36.5 3.1E+02 0.0067 24.4 11.1 100 96-217 21-126 (257)
103 PF00809 Pterin_bind: Pterin b 36.4 1.3E+02 0.0029 25.7 6.6 67 146-218 57-125 (210)
104 TIGR01579 MiaB-like-C MiaB-lik 36.1 3.9E+02 0.0085 25.5 11.2 128 140-279 164-314 (414)
105 PF13378 MR_MLE_C: Enolase C-t 36.1 92 0.002 23.4 5.0 51 167-220 3-56 (111)
106 COG1149 MinD superfamily P-loo 35.7 69 0.0015 28.9 4.7 50 169-220 201-250 (284)
107 TIGR01862 N2-ase-Ialpha nitrog 35.6 4.2E+02 0.0091 25.7 14.0 113 57-186 97-221 (443)
108 cd01822 Lysophospholipase_L1_l 35.4 2.3E+02 0.005 22.7 8.0 59 159-217 37-109 (177)
109 KOG0023 Alcohol dehydrogenase, 35.4 3.8E+02 0.0082 25.1 9.8 150 3-212 170-324 (360)
110 PF01784 NIF3: NIF3 (NGG1p int 35.2 21 0.00046 31.5 1.5 59 13-73 164-235 (241)
111 PRK13347 coproporphyrinogen II 35.0 4.3E+02 0.0094 25.6 11.9 76 91-172 212-292 (453)
112 PRK02714 O-succinylbenzoate sy 34.8 2E+02 0.0043 26.5 7.9 68 149-218 206-274 (320)
113 CHL00076 chlB photochlorophyll 34.2 4.8E+02 0.01 25.9 13.4 143 59-220 67-249 (513)
114 cd01966 Nitrogenase_NifN_1 Nit 34.0 3.9E+02 0.0085 25.6 10.0 114 58-186 62-188 (417)
115 cd01971 Nitrogenase_VnfN_like 33.9 4.4E+02 0.0094 25.3 10.9 112 58-188 67-192 (427)
116 cd00886 MogA_MoaB MogA_MoaB fa 33.4 1.9E+02 0.0041 23.3 6.8 47 38-88 21-68 (152)
117 COG3653 N-acyl-D-aspartate/D-g 33.3 4.7E+02 0.01 25.5 15.7 80 37-125 183-278 (579)
118 COG2089 SpsE Sialic acid synth 33.1 1.1E+02 0.0024 28.4 5.6 72 197-279 91-169 (347)
119 PF03851 UvdE: UV-endonuclease 32.8 1.8E+02 0.0039 26.3 7.0 79 36-124 45-153 (275)
120 cd01320 ADA Adenosine deaminas 32.6 3.8E+02 0.0083 24.3 18.3 125 145-291 172-303 (325)
121 PRK02901 O-succinylbenzoate sy 32.6 3.2E+02 0.007 25.3 8.9 73 32-113 51-133 (327)
122 cd00885 cinA Competence-damage 32.5 1.5E+02 0.0032 24.7 6.0 66 36-108 18-84 (170)
123 PF01487 DHquinase_I: Type I 3 32.1 3.3E+02 0.0071 23.4 11.4 118 35-177 74-191 (224)
124 PTZ00081 enolase; Provisional 31.6 4.9E+02 0.011 25.3 15.3 97 95-217 281-384 (439)
125 TIGR02329 propionate_PrpR prop 31.4 2.2E+02 0.0048 28.3 8.0 71 145-218 83-154 (526)
126 PRK03031 rnpA ribonuclease P; 31.3 2.5E+02 0.0054 21.8 7.0 65 80-158 47-114 (122)
127 COG1751 Uncharacterized conser 31.3 3E+02 0.0065 22.7 8.6 101 145-259 12-123 (186)
128 PF07287 DUF1446: Protein of u 31.2 2.4E+02 0.0051 26.7 7.7 89 147-246 10-100 (362)
129 PRK09413 IS2 repressor TnpA; R 31.1 1E+02 0.0022 23.9 4.6 39 35-73 15-54 (121)
130 PRK01221 putative deoxyhypusin 31.0 4.3E+02 0.0093 24.4 10.7 166 5-218 9-193 (312)
131 TIGR03597 GTPase_YqeH ribosome 30.9 4.5E+02 0.0098 24.6 11.9 118 35-177 50-173 (360)
132 cd08319 Death_RAIDD Death doma 30.9 58 0.0012 23.7 2.9 72 98-190 10-81 (83)
133 PLN02775 Probable dihydrodipic 30.6 4E+02 0.0087 24.3 8.8 71 104-194 68-138 (286)
134 PRK09058 coproporphyrinogen II 30.5 5.1E+02 0.011 25.1 11.5 32 91-123 223-254 (449)
135 PRK06015 keto-hydroxyglutarate 30.5 1.2E+02 0.0026 26.1 5.2 61 147-214 41-102 (201)
136 PRK13347 coproporphyrinogen II 30.1 4.8E+02 0.011 25.3 10.1 74 146-219 85-172 (453)
137 PRK07945 hypothetical protein; 29.8 4.6E+02 0.0099 24.4 20.6 107 35-167 110-228 (335)
138 KOG2018 Predicted dinucleotide 29.8 39 0.00085 31.1 2.2 105 199-315 180-294 (430)
139 COG2185 Sbm Methylmalonyl-CoA 29.7 1.8E+02 0.004 23.5 5.8 55 162-220 18-74 (143)
140 PF05368 NmrA: NmrA-like famil 29.6 3E+02 0.0064 23.5 7.8 67 151-220 36-105 (233)
141 KOG0259 Tyrosine aminotransfer 29.6 5.1E+02 0.011 24.8 12.4 144 35-218 80-241 (447)
142 COG2200 Rtn c-di-GMP phosphodi 29.3 4E+02 0.0087 23.5 10.0 133 62-218 69-215 (256)
143 PRK14457 ribosomal RNA large s 29.3 4.8E+02 0.01 24.4 13.5 149 61-220 163-330 (345)
144 PRK14476 nitrogenase molybdenu 29.2 5.4E+02 0.012 25.0 10.4 114 57-185 72-198 (455)
145 TIGR00735 hisF imidazoleglycer 29.1 4E+02 0.0087 23.5 12.1 64 149-212 188-253 (254)
146 TIGR01182 eda Entner-Doudoroff 29.1 1.5E+02 0.0032 25.6 5.5 61 147-214 45-106 (204)
147 COG1038 PycA Pyruvate carboxyl 28.9 5.1E+02 0.011 27.5 9.9 148 35-220 16-169 (1149)
148 PRK06740 histidinol-phosphatas 28.9 4.7E+02 0.01 24.2 13.3 24 35-58 60-83 (331)
149 cd03314 MAL Methylaspartate am 28.5 2.9E+02 0.0062 26.2 7.9 68 148-217 244-320 (369)
150 PRK15440 L-rhamnonate dehydrat 28.3 2E+02 0.0043 27.5 6.9 67 147-215 246-318 (394)
151 cd03321 mandelate_racemase Man 28.3 2.4E+02 0.0053 26.2 7.4 63 149-213 226-292 (355)
152 PF01248 Ribosomal_L7Ae: Ribos 28.2 2.3E+02 0.0051 20.5 6.6 64 147-216 2-65 (95)
153 PRK10528 multifunctional acyl- 28.1 2.7E+02 0.0058 23.1 7.1 93 155-249 40-147 (191)
154 PF03102 NeuB: NeuB family; I 28.1 2.8E+02 0.0062 24.5 7.3 112 35-172 55-183 (241)
155 COG2987 HutU Urocanate hydrata 28.0 1.3E+02 0.0027 29.3 5.3 106 61-192 149-267 (561)
156 TIGR01378 thi_PPkinase thiamin 27.8 2.4E+02 0.0051 24.1 6.7 57 199-279 50-110 (203)
157 PF14606 Lipase_GDSL_3: GDSL-l 27.6 1.5E+02 0.0032 25.0 5.1 102 16-125 33-146 (178)
158 cd03328 MR_like_3 Mandelate ra 27.4 3E+02 0.0066 25.6 7.9 66 148-215 221-292 (352)
159 PRK09061 D-glutamate deacylase 27.2 6.2E+02 0.013 25.0 11.3 109 38-170 171-286 (509)
160 TIGR02313 HpaI-NOT-DapA 2,4-di 27.2 4.7E+02 0.01 23.7 12.5 126 95-242 18-154 (294)
161 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.1 4.6E+02 0.0099 23.5 9.9 121 101-242 23-157 (275)
162 PF01081 Aldolase: KDPG and KH 27.1 1.5E+02 0.0033 25.3 5.3 58 150-214 48-106 (196)
163 PF01118 Semialdhyde_dh: Semia 27.0 89 0.0019 24.0 3.6 26 35-60 76-101 (121)
164 PRK14465 ribosomal RNA large s 26.9 4.9E+02 0.011 24.4 9.0 98 119-220 216-329 (342)
165 TIGR02931 anfK_nitrog Fe-only 26.8 6E+02 0.013 24.8 15.0 115 57-186 72-199 (461)
166 PF01791 DeoC: DeoC/LacD famil 26.7 4.2E+02 0.0091 22.9 8.3 77 37-124 20-101 (236)
167 PRK13015 3-dehydroquinate dehy 26.6 1.6E+02 0.0036 23.9 5.0 79 96-198 27-107 (146)
168 cd04740 DHOD_1B_like Dihydroor 26.5 4.7E+02 0.01 23.5 15.2 159 35-210 101-286 (296)
169 COG1031 Uncharacterized Fe-S o 26.4 4.8E+02 0.01 25.7 8.8 30 145-174 297-326 (560)
170 PF02679 ComA: (2R)-phospho-3- 26.4 3.6E+02 0.0077 24.0 7.6 77 36-123 84-168 (244)
171 COG4943 Predicted signal trans 26.3 6.4E+02 0.014 24.9 10.5 128 64-217 343-479 (524)
172 PRK02301 putative deoxyhypusin 26.3 5.3E+02 0.011 23.9 9.3 165 7-218 14-194 (316)
173 TIGR02080 O_succ_thio_ly O-suc 26.2 5.6E+02 0.012 24.1 9.9 73 146-219 101-176 (382)
174 TIGR03822 AblA_like_2 lysine-2 26.1 5.2E+02 0.011 23.8 11.5 74 145-220 152-238 (321)
175 PLN00191 enolase 26.0 4.9E+02 0.011 25.5 9.2 82 114-216 309-395 (457)
176 PRK09490 metH B12-dependent me 25.9 9.7E+02 0.021 26.8 12.8 92 109-218 394-489 (1229)
177 KOG1549 Cysteine desulfurase N 25.9 3.6E+02 0.0077 26.1 7.9 71 148-218 144-220 (428)
178 COG2877 KdsA 3-deoxy-D-manno-o 25.7 4.8E+02 0.01 23.2 9.4 104 99-216 35-138 (279)
179 TIGR01430 aden_deam adenosine 25.7 5.1E+02 0.011 23.6 18.3 157 38-220 74-243 (324)
180 COG4992 ArgD Ornithine/acetylo 25.6 4.8E+02 0.01 25.1 8.7 63 48-124 40-108 (404)
181 PLN02746 hydroxymethylglutaryl 25.5 5.7E+02 0.012 24.0 11.8 101 98-215 67-181 (347)
182 PRK00077 eno enolase; Provisio 25.5 6.1E+02 0.013 24.4 10.5 78 116-214 277-361 (425)
183 PF14871 GHL6: Hypothetical gl 25.5 69 0.0015 25.4 2.7 22 199-220 47-68 (132)
184 COG4130 Predicted sugar epimer 25.4 4.4E+02 0.0096 23.1 7.6 51 170-220 50-107 (272)
185 PRK01492 rnpA ribonuclease P; 25.4 3.2E+02 0.007 21.1 7.1 62 81-156 47-114 (118)
186 PF01081 Aldolase: KDPG and KH 25.3 1.9E+02 0.0042 24.7 5.6 99 145-278 19-120 (196)
187 PRK13371 4-hydroxy-3-methylbut 25.0 4.4E+02 0.0096 25.2 8.3 69 196-275 276-370 (387)
188 PRK13958 N-(5'-phosphoribosyl) 24.9 2.7E+02 0.0059 23.9 6.5 67 107-192 16-83 (207)
189 cd01306 PhnM PhnM is believed 24.9 2.1E+02 0.0046 26.5 6.2 72 145-217 94-184 (325)
190 PF09370 TIM-br_sig_trns: TIM- 24.5 1.6E+02 0.0034 26.6 4.9 58 145-215 94-156 (268)
191 PRK04390 rnpA ribonuclease P; 24.5 3.4E+02 0.0073 21.0 7.2 65 80-158 44-110 (120)
192 COG2102 Predicted ATPases of P 24.4 1.4E+02 0.0031 26.1 4.6 94 144-248 74-177 (223)
193 TIGR02082 metH 5-methyltetrahy 24.3 1E+03 0.022 26.5 12.5 92 109-218 378-473 (1178)
194 cd03320 OSBS o-Succinylbenzoat 24.1 4.4E+02 0.0096 23.3 8.0 69 148-219 166-237 (263)
195 PF07994 NAD_binding_5: Myo-in 24.1 2.5E+02 0.0054 25.7 6.4 149 98-272 132-283 (295)
196 TIGR01060 eno phosphopyruvate 24.1 5E+02 0.011 25.1 8.8 79 115-214 277-362 (425)
197 PRK09358 adenosine deaminase; 23.9 5.7E+02 0.012 23.5 18.1 72 145-220 181-253 (340)
198 PRK00507 deoxyribose-phosphate 23.5 3.9E+02 0.0085 23.2 7.3 70 35-114 135-208 (221)
199 PRK07534 methionine synthase I 23.5 6.1E+02 0.013 23.6 22.0 209 35-280 44-294 (336)
200 TIGR01927 menC_gamma/gm+ o-suc 23.4 5.7E+02 0.012 23.3 8.9 69 150-220 196-268 (307)
201 cd03466 Nitrogenase_NifN_2 Nit 23.4 6.7E+02 0.014 24.1 10.5 109 58-185 65-184 (429)
202 cd01967 Nitrogenase_MoFe_alpha 23.3 6.3E+02 0.014 23.8 11.9 111 58-185 68-189 (406)
203 PRK00730 rnpA ribonuclease P; 23.2 4E+02 0.0086 21.4 6.9 63 80-158 46-110 (138)
204 COG0626 MetC Cystathionine bet 23.1 4.7E+02 0.01 25.1 8.2 79 145-224 112-193 (396)
205 TIGR02026 BchE magnesium-proto 23.0 7.3E+02 0.016 24.4 13.1 104 95-219 222-346 (497)
206 PRK13602 putative ribosomal pr 23.0 2.9E+02 0.0063 19.8 6.5 58 152-216 3-60 (82)
207 COG3150 Predicted esterase [Ge 23.0 2.5E+02 0.0055 23.6 5.5 28 144-171 41-68 (191)
208 TIGR00433 bioB biotin syntheta 22.9 5.5E+02 0.012 22.9 9.2 71 143-216 62-140 (296)
209 COG4626 Phage terminase-like p 22.6 3.5E+02 0.0076 27.1 7.4 46 143-188 410-455 (546)
210 COG0820 Predicted Fe-S-cluster 22.6 4.4E+02 0.0095 24.8 7.7 97 119-220 216-330 (349)
211 PRK09875 putative hydrolase; P 22.5 5.9E+02 0.013 23.2 10.0 19 41-59 66-84 (292)
212 cd04743 NPD_PKS 2-Nitropropane 22.5 6.3E+02 0.014 23.4 9.3 63 154-216 22-89 (320)
213 COG1831 Predicted metal-depend 22.4 3.7E+02 0.0079 24.3 6.8 66 145-210 106-185 (285)
214 PRK05588 histidinol-phosphatas 22.3 5.3E+02 0.012 22.6 14.1 81 35-125 15-103 (255)
215 COG1104 NifS Cysteine sulfinat 22.3 2.1E+02 0.0046 27.3 5.7 73 145-217 101-179 (386)
216 cd04742 NPD_FabD 2-Nitropropan 22.3 3.7E+02 0.0081 26.0 7.4 68 150-218 29-104 (418)
217 PRK05799 coproporphyrinogen II 22.2 6.5E+02 0.014 23.5 9.4 74 145-218 36-118 (374)
218 PRK14338 (dimethylallyl)adenos 22.2 7E+02 0.015 24.2 9.6 46 6-56 10-55 (459)
219 PF07476 MAAL_C: Methylasparta 22.1 2.4E+02 0.0053 24.8 5.5 68 145-214 118-194 (248)
220 TIGR01088 aroQ 3-dehydroquinat 22.0 2.1E+02 0.0047 23.0 4.8 80 96-199 25-106 (141)
221 PRK05301 pyrroloquinoline quin 22.0 6.6E+02 0.014 23.5 9.8 72 143-218 46-123 (378)
222 smart00148 PLCXc Phospholipase 21.6 4.1E+02 0.0089 21.0 6.8 18 39-56 31-48 (135)
223 PF14502 HTH_41: Helix-turn-he 21.5 1.7E+02 0.0038 18.9 3.4 31 233-263 6-38 (48)
224 COG2185 Sbm Methylmalonyl-CoA 21.5 4.4E+02 0.0096 21.3 11.5 109 35-178 25-134 (143)
225 cd03770 SR_TndX_transposase Se 21.4 1.8E+02 0.0038 23.0 4.4 53 101-167 54-106 (140)
226 smart00642 Aamy Alpha-amylase 21.3 1.7E+02 0.0037 24.1 4.5 75 144-220 17-94 (166)
227 TIGR01285 nifN nitrogenase mol 21.3 7.5E+02 0.016 23.9 10.0 113 58-185 72-197 (432)
228 cd00466 DHQase_II Dehydroquina 21.2 2.4E+02 0.0053 22.7 5.0 79 96-198 25-105 (140)
229 COG2159 Predicted metal-depend 21.1 4.9E+02 0.011 23.6 7.8 92 108-219 55-167 (293)
230 PRK09613 thiH thiamine biosynt 21.0 6.8E+02 0.015 24.6 9.1 106 96-218 116-241 (469)
231 COG0159 TrpA Tryptophan syntha 20.7 6.3E+02 0.014 22.8 11.2 53 183-245 94-148 (265)
232 PRK08508 biotin synthase; Prov 20.6 5.4E+02 0.012 23.0 7.9 71 143-215 40-118 (279)
233 PF11181 YflT: Heat induced st 20.6 1.7E+02 0.0036 22.0 3.9 29 59-89 6-34 (103)
234 PRK14459 ribosomal RNA large s 20.5 6E+02 0.013 24.1 8.4 99 118-220 241-359 (373)
235 cd01821 Rhamnogalacturan_acety 20.5 4.9E+02 0.011 21.4 7.4 88 160-247 36-149 (198)
236 COG0289 DapB Dihydrodipicolina 20.3 2.3E+02 0.0051 25.4 5.2 52 143-194 77-128 (266)
237 PF13380 CoA_binding_2: CoA bi 20.0 4E+02 0.0088 20.3 6.9 19 197-215 90-108 (116)
238 PRK09249 coproporphyrinogen II 20.0 8E+02 0.017 23.7 9.7 74 146-219 84-171 (453)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.5e-65 Score=454.09 Aligned_cols=267 Identities=45% Similarity=0.736 Sum_probs=245.4
Q ss_pred CCCceeeCCCCCccCcccccccccCCCCChHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceE
Q 020679 6 SIPEAPLGSTGKTIPLVGFGTAQFPFGAATEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELF 85 (323)
Q Consensus 6 ~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~ 85 (323)
.+.+.+|++ |.+||.||||||+++. ...+.+.+..|++.|+|+||||.+||||+.||+++++. |+ +|+++|
T Consensus 2 ~~~~~~l~~-g~~iP~iGlGt~~~~~---~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v--~ReelF 72 (280)
T COG0656 2 MKTKVTLNN-GVEIPAIGLGTWQIGD---DEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV--PREELF 72 (280)
T ss_pred CCceeecCC-CCcccCcceEeeecCC---chhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC--CHHHeE
Confidence 355678888 8889999999999862 23388999999999999999999999999999999985 77 899999
Q ss_pred EeeecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEE
Q 020679 86 ITSKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIG 165 (323)
Q Consensus 86 i~tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iG 165 (323)
|+||+|..+.+++.+.+++++||+|||+||+|+|+||||... . .....++|++|++++++||||+||
T Consensus 73 ittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~------------~~~~~etw~alE~l~~~G~ir~IG 139 (280)
T COG0656 73 ITTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K------------YVVIEETWKALEELVDEGLIRAIG 139 (280)
T ss_pred EEeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c------------CccHHHHHHHHHHHHhcCCccEEE
Confidence 999999999999999999999999999999999999999653 1 011689999999999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCC
Q 020679 166 VSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGK 245 (323)
Q Consensus 166 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~ 245 (323)
||||+..+++++++...+.|++||++||++.++.+++++|+++||.+++||||+. |. .++.++.+.+||++|+.
T Consensus 140 VSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~-----~l~~~~~l~~Ia~k~g~ 213 (280)
T COG0656 140 VSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GG-----KLLDNPVLAEIAKKYGK 213 (280)
T ss_pred eeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-cc-----ccccChHHHHHHHHhCC
Confidence 9999999999999999999999999999999998999999999999999999985 42 16788899999999999
Q ss_pred CHHHHHHHHHHhCCcEEEeCCCCHHHHHHhhccccCcCCHHHHHHHhccCCCCCC
Q 020679 246 SVAQVSLRWVYQQGVSLVVKSFNKERMKENLDIFDWELSAEELQKIEQIPQYRGS 300 (323)
Q Consensus 246 s~~q~al~~~l~~~~~~i~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~~ 300 (323)
|++|++|+|++++|+++||.+++++|+++|++++++.||+||++.|+++....+.
T Consensus 214 t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 214 TPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred CHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 9999999999999999999999999999999999999999999999999887654
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=6e-63 Score=437.39 Aligned_cols=281 Identities=49% Similarity=0.767 Sum_probs=255.6
Q ss_pred ceeeCCCCCccCcccccccccCCCCChHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEee
Q 020679 9 EAPLGSTGKTIPLVGFGTAQFPFGAATEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITS 88 (323)
Q Consensus 9 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~t 88 (323)
+.+|.+ |.++|.||||||+.. ..++.+.+..|++.|+||||||..||||+-||++|++.+.+|.+ +|+++||+|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~~----~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~RediFiTS 79 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQSP----PGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-KREDIFITS 79 (300)
T ss_pred eEeccC-CCccceeeeEecccC----hhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-chhhheeee
Confidence 688887 999999999999843 68899999999999999999999999999999999999977655 999999999
Q ss_pred ecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCC--CCC-CCCCcHHHHHHHHHHHHHcCCccEEE
Q 020679 89 KLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFN--KED-IVPLDYEAVWEAMEECQNLGLTKSIG 165 (323)
Q Consensus 89 K~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~--~~~-~~~~~~~~~~~~L~~l~~~G~Ir~iG 165 (323)
|+|+..+.++.+..++++||++||+||+|+|++|||....+ ..|.+ .+. ....+..++|++|++++++|++|+||
T Consensus 80 Klw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~--~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIG 157 (300)
T KOG1577|consen 80 KLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD--SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIG 157 (300)
T ss_pred ccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC--CCCcccccccccccchHHHHHHHHHHHHHcCCceEee
Confidence 99998888999999999999999999999999999988744 11111 111 12256899999999999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCC
Q 020679 166 VSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGK 245 (323)
Q Consensus 166 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~ 245 (323)
||||+..++++++..+.++|.++|++++|+.++.+++++|+++||.+.|||||+.++. +. .++.++.+.+||++|+.
T Consensus 158 VSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K~~k 234 (300)
T KOG1577|consen 158 VSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKKYNK 234 (300)
T ss_pred eecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999998333 12 67889999999999999
Q ss_pred CHHHHHHHHHHhCCcEEEeCCCCHHHHHHhhccccCcCCHHHHHHHhccCCCCCC
Q 020679 246 SVAQVSLRWVYQQGVSLVVKSFNKERMKENLDIFDWELSAEELQKIEQIPQYRGS 300 (323)
Q Consensus 246 s~~q~al~~~l~~~~~~i~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~~ 300 (323)
||+|++|||++++|++|||.++|+++++||++++++.||++|++.|++.....|.
T Consensus 235 t~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 235 TPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred CHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 9999999999999999999999999999999999999999999999988888775
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2.6e-60 Score=435.92 Aligned_cols=269 Identities=35% Similarity=0.514 Sum_probs=239.1
Q ss_pred CCceeeCCCCCccCcccccccccCCC---CChHHHHHHHHHHHHcCCCEEecCCCcC---CHHHHHHHHHHHHHcCCCCC
Q 020679 7 IPEAPLGSTGKTIPLVGFGTAQFPFG---AATEVVKESVVHAIEVGYRHFDTAAIYQ---SEQPLGEAIAEALRLGLIKS 80 (323)
Q Consensus 7 m~~~~lg~tg~~vs~lglG~~~~~~~---~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~vG~~l~~~~~~g~~~~ 80 (323)
|+|++||+||++||+||||||.+++. ...+++.++|++|+++|||+||||+.|| ||++||++|+.. + .
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~---~ 74 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G---R 74 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C---C
Confidence 78999999999999999999999872 2134677799999999999999999999 899999999975 2 3
Q ss_pred CCceEEeeecCCC----------CCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 020679 81 RNELFITSKLWLG----------HAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWE 150 (323)
Q Consensus 81 R~~~~i~tK~~~~----------~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (323)
|++++|+||++.. +.+++.|.++++.||+||||||||+||+|||+...| .+++++
T Consensus 75 Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p---------------~~e~~~ 139 (316)
T COG0667 75 RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP---------------IEETLE 139 (316)
T ss_pred CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC---------------HHHHHH
Confidence 8999999999532 348999999999999999999999999999987443 788999
Q ss_pred HHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhh--HHHHHHHHHhCceEEEeccCCCCCCCCCCC
Q 020679 151 AMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRVFCEKKGIHITAYSPLGAKGTRWGTN 228 (323)
Q Consensus 151 ~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~~l~~~G~l~~~~ 228 (323)
+|.+|+++||||+||+||++.+++.++.+.+ .+++++|..||++.++ .+++++|+++||++++|+||++ |+|+++.
T Consensus 140 aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Ltgk~ 217 (316)
T COG0667 140 ALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLTGKY 217 (316)
T ss_pred HHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccCCCc
Confidence 9999999999999999999999999998886 5678999999999965 5699999999999999999998 9998863
Q ss_pred Cc------------c----------ChHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccCcCC
Q 020679 229 RV------------M----------ECQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDWELS 284 (323)
Q Consensus 229 ~~------------~----------~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~ 284 (323)
.. . ....+.++|+++|+|++|+||+|++++| +++|+|+++++||++|+++++..|+
T Consensus 218 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~ 297 (316)
T COG0667 218 LPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLS 297 (316)
T ss_pred CCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCC
Confidence 32 0 0144889999999999999999999997 7899999999999999999999999
Q ss_pred HHHHHHHhccCCCC
Q 020679 285 AEELQKIEQIPQYR 298 (323)
Q Consensus 285 ~e~~~~l~~~~~~~ 298 (323)
+++++.|++.....
T Consensus 298 ~~~~~~l~~~~~~~ 311 (316)
T COG0667 298 EEELAALDEISAEE 311 (316)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999876643
No 4
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=7.7e-60 Score=425.04 Aligned_cols=283 Identities=28% Similarity=0.442 Sum_probs=253.9
Q ss_pred CCCCCCCCceeeCCCCCccCcccccccccC---C-CCChHHHHHHHHHHHHcCCCEEecCCCcC---CHHHHHHHHHHHH
Q 020679 1 MKKEVSIPEAPLGSTGKTIPLVGFGTAQFP---F-GAATEVVKESVVHAIEVGYRHFDTAAIYQ---SEQPLGEAIAEAL 73 (323)
Q Consensus 1 ~~~~~~m~~~~lg~tg~~vs~lglG~~~~~---~-~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~vG~~l~~~~ 73 (323)
|.+...|+++++|++|++||++|||||.+. + .+ .+++.++|++|+++|+|+||||+.|| ||+.+|++|+++
T Consensus 6 ~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~-~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~- 83 (336)
T KOG1575|consen 6 PSTELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQID-KEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR- 83 (336)
T ss_pred ccchhcceeeeccCCCceecceeecceeeeccccCCC-HHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc-
Confidence 455677999999999999999999995432 2 35 89999999999999999999999999 799999999987
Q ss_pred HcCCCCCCCceEEeeecCC-------CCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHH
Q 020679 74 RLGLIKSRNELFITSKLWL-------GHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYE 146 (323)
Q Consensus 74 ~~g~~~~R~~~~i~tK~~~-------~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
+. +|++++|+||++. ...++..+.+.++.|++||+++|||+||+||+|...| .+
T Consensus 84 --~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p---------------ie 144 (336)
T KOG1575|consen 84 --GW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP---------------IE 144 (336)
T ss_pred --CC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC---------------HH
Confidence 54 8999999999853 2346788999999999999999999999999998765 89
Q ss_pred HHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhh---HHHHHHHHHhCceEEEeccCCCCCC
Q 020679 147 AVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ---KKLRVFCEKKGIHITAYSPLGAKGT 223 (323)
Q Consensus 147 ~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~~l~~~G~ 223 (323)
+++++|.+++++|||++||+|++++.++.++...+.++++++|++||++.++ .+++++|++.||++++|+||+. |+
T Consensus 145 e~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~-G~ 223 (336)
T KOG1575|consen 145 ETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR-GL 223 (336)
T ss_pred HHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-ce
Confidence 9999999999999999999999999999999999888899999999999986 5699999999999999999998 99
Q ss_pred CCCCCCc-------------c----C----------hHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHH
Q 020679 224 RWGTNRV-------------M----E----------CQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKE 274 (323)
Q Consensus 224 l~~~~~~-------------~----~----------~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~e 274 (323)
|+++... + . .+.+.++|+++|+|++|+||+|+++++ ++||||+++++||+|
T Consensus 224 Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~e 303 (336)
T KOG1575|consen 224 LTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKE 303 (336)
T ss_pred eccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHH
Confidence 9876321 0 0 144789999999999999999999998 899999999999999
Q ss_pred hhccccCcCCHHHHHHHhccCCCCCCccccc
Q 020679 275 NLDIFDWELSAEELQKIEQIPQYRGSRAEVH 305 (323)
Q Consensus 275 nl~a~~~~L~~e~~~~l~~~~~~~~~~~~~~ 305 (323)
|++|++..|+++++..|+++.+.....+++|
T Consensus 304 ni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~ 334 (336)
T KOG1575|consen 304 NIGALSVKLTPEEIKELEEIIDKILGFGPRS 334 (336)
T ss_pred HHhhhhccCCHHHHHHHHHhhccccCcCCCC
Confidence 9999999999999999999999888777665
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.1e-58 Score=417.70 Aligned_cols=254 Identities=37% Similarity=0.627 Sum_probs=229.8
Q ss_pred CccCcccccccccCCCCChHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCC
Q 020679 17 KTIPLVGFGTAQFPFGAATEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAH 96 (323)
Q Consensus 17 ~~vs~lglG~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~ 96 (323)
++||+||||||+++ .+++.++++.|+++|||+||||+.||+|+.||++|++. |+ +|+++||+||++....+
T Consensus 1 ~~vs~lglGt~~~~----~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~~~~~~~ 71 (267)
T PRK11172 1 MSIPAFGLGTFRLK----DQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKIWIDNLA 71 (267)
T ss_pred CCCCCEeeEccccC----hHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEeCCCCCC
Confidence 46999999999875 57899999999999999999999999999999999864 54 79999999999876778
Q ss_pred hhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHH
Q 020679 97 RQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLER 176 (323)
Q Consensus 97 ~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~ 176 (323)
++.+++++++||+|||+||||+|++|||+... ..+.+++|++|++|+++||||+||||||+.+++++
T Consensus 72 ~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~-------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~ 138 (267)
T PRK11172 72 KDKLIPSLKESLQKLRTDYVDLTLIHWPSPND-------------EVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQ 138 (267)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCC-------------CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHH
Confidence 89999999999999999999999999996421 12468899999999999999999999999999999
Q ss_pred HHHhCCC-CceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHHHHHHH
Q 020679 177 LLATAKI-PPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQVSLRWV 255 (323)
Q Consensus 177 ~~~~~~~-~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~ 255 (323)
+++.... .+.++|++||++.++.+++++|+++||++++|+||++ |.+. ..+.+.++|+++++|++|+||+|+
T Consensus 139 ~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~~------~~~~l~~~a~~~~~s~aqval~w~ 211 (267)
T PRK11172 139 AIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKVL------KDPVIARIAAKHNATPAQVILAWA 211 (267)
T ss_pred HHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Cccc------CCHHHHHHHHHhCCCHHHHHHHHH
Confidence 8886654 6789999999999888999999999999999999987 7542 346799999999999999999999
Q ss_pred HhCCcEEEeCCCCHHHHHHhhccccCcCCHHHHHHHhccCCCCC
Q 020679 256 YQQGVSLVVKSFNKERMKENLDIFDWELSAEELQKIEQIPQYRG 299 (323)
Q Consensus 256 l~~~~~~i~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~ 299 (323)
+++++++|+|+++++|+++|+++++++||++++++|+++.++.+
T Consensus 212 l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 212 MQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred HhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 99998899999999999999999999999999999999987643
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.9e-57 Score=423.09 Aligned_cols=284 Identities=26% Similarity=0.356 Sum_probs=236.4
Q ss_pred CCceeeCCCCCccCcccccccccCC-CCChHHHHHHHHHHHHcCCCEEecCCCcC----------CHHHHHHHHHHHHHc
Q 020679 7 IPEAPLGSTGKTIPLVGFGTAQFPF-GAATEVVKESVVHAIEVGYRHFDTAAIYQ----------SEQPLGEAIAEALRL 75 (323)
Q Consensus 7 m~~~~lg~tg~~vs~lglG~~~~~~-~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg----------sE~~vG~~l~~~~~~ 75 (323)
|+|++||+||++||+||||||.|+. .+ .+++.++++.|+++|||+||||+.|| ||+.||++|++.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~-~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~--- 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNS-EADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR--- 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCC-HHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---
Confidence 6799999999999999999999985 35 78899999999999999999999996 899999999853
Q ss_pred CCCCCCCceEEeeecCCC------------CCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCC--CC-CCCCCCCCC
Q 020679 76 GLIKSRNELFITSKLWLG------------HAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKP--GT-GFPFNKEDI 140 (323)
Q Consensus 76 g~~~~R~~~~i~tK~~~~------------~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~--~~-~~~~~~~~~ 140 (323)
+ .|+++||+||++.. +.+++.+++++++||+|||+||||+|++|||+.... +. .+... .+.
T Consensus 77 ~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~-~~~ 152 (346)
T PRK10625 77 G---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWT-DSA 152 (346)
T ss_pred C---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccc-ccc
Confidence 3 69999999998531 357899999999999999999999999999965210 00 00000 000
Q ss_pred CCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhC---C-CCceeecccCChhhhh--HHHHHHHHHhCceEEE
Q 020679 141 VPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATA---K-IPPAVNQVELNPVWQQ--KKLRVFCEKKGIHITA 214 (323)
Q Consensus 141 ~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via 214 (323)
.....+++|++|++|+++||||+||+|||+..++++++..+ . ..+.++|++||+++++ .+++++|+++||++++
T Consensus 153 ~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via 232 (346)
T PRK10625 153 PAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLA 232 (346)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEE
Confidence 01347899999999999999999999999999887765432 2 3567899999998875 5799999999999999
Q ss_pred eccCCCCCCCCCCCC-----------ccC-------------hHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCC
Q 020679 215 YSPLGAKGTRWGTNR-----------VME-------------CQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFN 268 (323)
Q Consensus 215 ~~~l~~~G~l~~~~~-----------~~~-------------~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~ 268 (323)
|+||++ |+|+++.. .+. .+.+.++|+++++|++|+||+|++++| +++|+|+++
T Consensus 233 ~spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~ 311 (346)
T PRK10625 233 YSCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATT 311 (346)
T ss_pred eccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCC
Confidence 999997 99876421 010 256889999999999999999999998 468999999
Q ss_pred HHHHHHhhccccCcCCHHHHHHHhccCCCCC
Q 020679 269 KERMKENLDIFDWELSAEELQKIEQIPQYRG 299 (323)
Q Consensus 269 ~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~ 299 (323)
++||++|+++++++|++++++.|+++.....
T Consensus 312 ~~~l~en~~a~~~~L~~~~~~~l~~~~~~~~ 342 (346)
T PRK10625 312 MEQLKTNIESLHLTLSEEVLAEIEAVHQVYT 342 (346)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999865433
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4.6e-57 Score=416.94 Aligned_cols=264 Identities=27% Similarity=0.435 Sum_probs=229.8
Q ss_pred ceeeCCCCCccCcccccccc-cCC-CCChHHHHHHHHHHHHcCCCEEecCCCcC---CHHHHHHHHHHHHHcCCCCCCCc
Q 020679 9 EAPLGSTGKTIPLVGFGTAQ-FPF-GAATEVVKESVVHAIEVGYRHFDTAAIYQ---SEQPLGEAIAEALRLGLIKSRNE 83 (323)
Q Consensus 9 ~~~lg~tg~~vs~lglG~~~-~~~-~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~vG~~l~~~~~~g~~~~R~~ 83 (323)
||+||+||++||+||||||. ++. .+ .+++.++|+.|+++|||+||||+.|| ||+.||++|+.. +. +|++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~-~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~--~R~~ 74 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQIS-DEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW--RRSS 74 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCC-HHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC--Cccc
Confidence 58899999999999999997 443 45 78899999999999999999999998 899999999864 43 6999
Q ss_pred eEEeeecCCC-------CCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 020679 84 LFITSKLWLG-------HAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQ 156 (323)
Q Consensus 84 ~~i~tK~~~~-------~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 156 (323)
++|+||++.. +.+++.+++++++||+||||||||+|++|||+... +.+++|++|++|+
T Consensus 75 ~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~---------------~~~e~~~aL~~l~ 139 (317)
T TIGR01293 75 YVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNT---------------PMEETVRAMTYVI 139 (317)
T ss_pred EEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCC---------------CHHHHHHHHHHHH
Confidence 9999998422 35789999999999999999999999999997532 3789999999999
Q ss_pred HcCCccEEEcCCCCHHHHHHHHHhCC----CCceeecccCChhhhh---HHHHHHHHHhCceEEEeccCCCCCCCCCCCC
Q 020679 157 NLGLTKSIGVSNFACKKLERLLATAK----IPPAVNQVELNPVWQQ---KKLRVFCEKKGIHITAYSPLGAKGTRWGTNR 229 (323)
Q Consensus 157 ~~G~Ir~iGvs~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~~l~~~G~l~~~~~ 229 (323)
++||||+||+|||+..+++++...+. ++++++|++||++.++ .+++++|+++||++++|+||++ |+|+++..
T Consensus 140 ~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~~ 218 (317)
T TIGR01293 140 NQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKYD 218 (317)
T ss_pred HcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCCC
Confidence 99999999999999999877654322 5778999999999875 3799999999999999999998 99886421
Q ss_pred c------------c---------C--------hHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhcc
Q 020679 230 V------------M---------E--------CQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDI 278 (323)
Q Consensus 230 ~------------~---------~--------~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a 278 (323)
. . . .+.+.++|+++++|++|+||+|++++| +++|+|+++++|+++|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a 298 (317)
T TIGR01293 219 SGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGS 298 (317)
T ss_pred CCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHH
Confidence 0 0 0 146888999999999999999999997 5789999999999999999
Q ss_pred ccC--cCCHHHHHHHhcc
Q 020679 279 FDW--ELSAEELQKIEQI 294 (323)
Q Consensus 279 ~~~--~L~~e~~~~l~~~ 294 (323)
++. +||++++++|+++
T Consensus 299 ~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 299 LQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred hhccCCCCHHHHHHHHhh
Confidence 987 9999999999975
No 8
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=9.4e-57 Score=419.17 Aligned_cols=274 Identities=26% Similarity=0.431 Sum_probs=234.9
Q ss_pred CCCCCceeeCCCCCccCcccccccc-cCCCCChHHHHHHHHHHHHcCCCEEecCCCcC-----CHHHHHHHHHHHHHcCC
Q 020679 4 EVSIPEAPLGSTGKTIPLVGFGTAQ-FPFGAATEVVKESVVHAIEVGYRHFDTAAIYQ-----SEQPLGEAIAEALRLGL 77 (323)
Q Consensus 4 ~~~m~~~~lg~tg~~vs~lglG~~~-~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-----sE~~vG~~l~~~~~~g~ 77 (323)
+..|+|++||+||++||+||||||. ++...+.+++.++|+.|+++|||+||||+.|| ||+.||++|++.. +.
T Consensus 10 ~~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~--~~ 87 (346)
T PRK09912 10 YGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF--AA 87 (346)
T ss_pred CCCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc--cC
Confidence 4569999999999999999999996 54322267789999999999999999999998 6999999998531 11
Q ss_pred CCCCCceEEeeecCC----C----CCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 020679 78 IKSRNELFITSKLWL----G----HAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVW 149 (323)
Q Consensus 78 ~~~R~~~~i~tK~~~----~----~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (323)
.|+++||+||++. . +.+++.+++++++||+|||+||||+|++|||+... +.+++|
T Consensus 88 --~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~---------------~~~e~~ 150 (346)
T PRK09912 88 --YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENT---------------PMEETA 150 (346)
T ss_pred --CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC---------------CHHHHH
Confidence 5999999999752 1 24688999999999999999999999999997533 378999
Q ss_pred HHHHHHHHcCCccEEEcCCCCHHHHHHHHH---hCCCCceeecccCChhhhh---HHHHHHHHHhCceEEEeccCCCCCC
Q 020679 150 EAMEECQNLGLTKSIGVSNFACKKLERLLA---TAKIPPAVNQVELNPVWQQ---KKLRVFCEKKGIHITAYSPLGAKGT 223 (323)
Q Consensus 150 ~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~~l~~~G~ 223 (323)
++|++|+++||||+||||||++++++++.+ ...+++.++|++||++++. .+++++|+++||++++|+||++ |+
T Consensus 151 ~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~-G~ 229 (346)
T PRK09912 151 SALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ-GL 229 (346)
T ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-cc
Confidence 999999999999999999999998876554 3346778999999999874 4799999999999999999998 99
Q ss_pred CCCCCC----------------------ccC------hHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHH
Q 020679 224 RWGTNR----------------------VME------CQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMK 273 (323)
Q Consensus 224 l~~~~~----------------------~~~------~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~ 273 (323)
|+++.. ... .+.+.++|+++|+|++|+||+|++++| +++|+|+++++||+
T Consensus 230 Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~ 309 (346)
T PRK09912 230 LTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLE 309 (346)
T ss_pred ccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHH
Confidence 986420 000 156788999999999999999999998 67899999999999
Q ss_pred Hhhcccc-CcCCHHHHHHHhccCCC
Q 020679 274 ENLDIFD-WELSAEELQKIEQIPQY 297 (323)
Q Consensus 274 enl~a~~-~~L~~e~~~~l~~~~~~ 297 (323)
+|+++++ ++|++++++.|+++.++
T Consensus 310 en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 310 ENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 9999985 79999999999998654
No 9
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.1e-55 Score=397.77 Aligned_cols=261 Identities=39% Similarity=0.696 Sum_probs=233.9
Q ss_pred CceeeCCCCCccCcccccccccCCCCChHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEe
Q 020679 8 PEAPLGSTGKTIPLVGFGTAQFPFGAATEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFIT 87 (323)
Q Consensus 8 ~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~ 87 (323)
++..|. +|++||+||||||+++ .+++.+++++|++.|+|+||||+.||+|+.+|++|+.. ++ +|+++||+
T Consensus 5 ~~~~l~-~g~~v~~lglG~~~~~----~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~~~i~ 74 (275)
T PRK11565 5 TVIKLQ-DGNVMPQLGLGVWQAS----NEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV--AREELFIT 74 (275)
T ss_pred ceEEcC-CCCccCCcceECccCC----HHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--CHHHEEEE
Confidence 345674 5999999999999864 68899999999999999999999999999999999864 54 69999999
Q ss_pred eecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcC
Q 020679 88 SKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVS 167 (323)
Q Consensus 88 tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs 167 (323)
||++.. +++.+++++++||+|||+||+|+|++|||+...+ ...++|++|++|+++|+||+||+|
T Consensus 75 tK~~~~--~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~--------------~~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 75 TKLWND--DHKRPREALEESLKKLQLDYVDLYLMHWPVPAID--------------HYVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred EEecCc--chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcC--------------cHHHHHHHHHHHHHcCCeeEEeec
Confidence 999753 4689999999999999999999999999964221 267999999999999999999999
Q ss_pred CCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCH
Q 020679 168 NFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSV 247 (323)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~ 247 (323)
||+.+++++++....+.|.++|++|+++.++.+++++|+++||++++|+||++ |. ...+..+.+.++|+++|+|+
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~----~~~~~~~~l~~ia~~~g~s~ 213 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG----KGVFDQKVIRDLADKYGKTP 213 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CC----cccccCHHHHHHHHHhCCCH
Confidence 99999999998777788899999999998888999999999999999999986 53 12344678999999999999
Q ss_pred HHHHHHHHHhCCcEEEeCCCCHHHHHHhhccccCcCCHHHHHHHhccCCCCC
Q 020679 248 AQVSLRWVYQQGVSLVVKSFNKERMKENLDIFDWELSAEELQKIEQIPQYRG 299 (323)
Q Consensus 248 ~q~al~~~l~~~~~~i~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~ 299 (323)
+|+||||+++++.++|+|+++++|+++|+++++++|+++++++|+++....+
T Consensus 214 aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 214 AQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred HHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 9999999999998899999999999999999999999999999999977655
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.4e-55 Score=404.04 Aligned_cols=269 Identities=21% Similarity=0.294 Sum_probs=229.4
Q ss_pred ceeeCCCCCccCcccccccccCC----CCChHHHHHHHHHHHHcCCCEEecCCCcC---CHHHHHHHHHHHHHcCCCCCC
Q 020679 9 EAPLGSTGKTIPLVGFGTAQFPF----GAATEVVKESVVHAIEVGYRHFDTAAIYQ---SEQPLGEAIAEALRLGLIKSR 81 (323)
Q Consensus 9 ~~~lg~tg~~vs~lglG~~~~~~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~vG~~l~~~~~~g~~~~R 81 (323)
||+||+||++||+||||||+++. .+ .+++.++++.|+++|||+||||+.|| ||+.+|++|+.. +. +|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~-~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~--~R 74 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVS-EEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI--PR 74 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCC-HHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC--Cc
Confidence 68999999999999999999873 45 78899999999999999999999997 699999999864 43 69
Q ss_pred CceEEeeecCC----CCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 020679 82 NELFITSKLWL----GHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQN 157 (323)
Q Consensus 82 ~~~~i~tK~~~----~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 157 (323)
+++||+||++. .+.+++.+++++++||+|||+||||+|++|||+...+ ....+++|++|++|++
T Consensus 75 ~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~------------~~~~~~~~~~l~~l~~ 142 (314)
T PLN02587 75 EKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL------------DQIVNETIPALQKLKE 142 (314)
T ss_pred ceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch------------hhhHHHHHHHHHHHHH
Confidence 99999999874 2567899999999999999999999999999964211 1235789999999999
Q ss_pred cCCccEEEcCCCCHHHHHHHHHhC---CCCceeecccCChhhhh-HHHHHHHHHhCceEEEeccCCCCCCCCCCCC-cc-
Q 020679 158 LGLTKSIGVSNFACKKLERLLATA---KIPPAVNQVELNPVWQQ-KKLRVFCEKKGIHITAYSPLGAKGTRWGTNR-VM- 231 (323)
Q Consensus 158 ~G~Ir~iGvs~~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~~l~~~G~l~~~~~-~~- 231 (323)
+||||+||+|||+.++++.+.+.. .+++.++|+.||+..+. .+++++|+++||++++|+||++ |+|+++.. ..
T Consensus 143 ~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~ 221 (314)
T PLN02587 143 SGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPEWH 221 (314)
T ss_pred CCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCCCC
Confidence 999999999999998887776532 24555678888887653 6899999999999999999998 99987421 00
Q ss_pred -C-------hHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhcccc----CcCCHHHHHHHhccCC
Q 020679 232 -E-------CQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFD----WELSAEELQKIEQIPQ 296 (323)
Q Consensus 232 -~-------~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~----~~L~~e~~~~l~~~~~ 296 (323)
. .+.+.++|+++++|++|+||+|++++| +++|+|+++++|+++|+++++ .+|+++++++|+++..
T Consensus 222 ~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 222 PAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 0 134678999999999999999999998 578999999999999999976 3799999999998875
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.9e-54 Score=394.07 Aligned_cols=264 Identities=41% Similarity=0.615 Sum_probs=237.4
Q ss_pred ceeeCCCCCccCcccccccccCC--CCChHHHHHHHHHHHHcCCCEEecCCCcC---CHHHHHHHHHHHHHcCCCCCCCc
Q 020679 9 EAPLGSTGKTIPLVGFGTAQFPF--GAATEVVKESVVHAIEVGYRHFDTAAIYQ---SEQPLGEAIAEALRLGLIKSRNE 83 (323)
Q Consensus 9 ~~~lg~tg~~vs~lglG~~~~~~--~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~vG~~l~~~~~~g~~~~R~~ 83 (323)
+++||+||++||+|||||+.++. .+ .+++.++++.|++.|||+||||+.|| ||+.+|++|++. + .|++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~-~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~---~R~~ 73 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVD-EEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G---PREE 73 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCC-HHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C---CcCc
Confidence 57899999999999999999875 25 68999999999999999999999999 899999999964 1 3999
Q ss_pred eEEeeecCCCC-----CChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHc
Q 020679 84 LFITSKLWLGH-----AHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNL 158 (323)
Q Consensus 84 ~~i~tK~~~~~-----~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 158 (323)
+||+||++... .+++.+++++++||++||+||||+|+||||+...+ ...++|++|++++++
T Consensus 74 ~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~--------------~~~~~~~~l~~l~~~ 139 (285)
T cd06660 74 VFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP--------------DIEETLRALEELVKE 139 (285)
T ss_pred EEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC--------------CHHHHHHHHHHHHHc
Confidence 99999998654 57899999999999999999999999999975321 378999999999999
Q ss_pred CCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhhH--HHHHHHHHhCceEEEeccCCCCCCCCCCCCccC----
Q 020679 159 GLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQK--KLRVFCEKKGIHITAYSPLGAKGTRWGTNRVME---- 232 (323)
Q Consensus 159 G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~---- 232 (323)
|+||+||+|+|+.+.+++++..+..+++++|++||++++.. +++++|+++||++++|+||++ |.+++......
T Consensus 140 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~~~ 218 (285)
T cd06660 140 GKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPPPE 218 (285)
T ss_pred CCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCCCh
Confidence 99999999999999999999887788999999999999874 599999999999999999998 88876543221
Q ss_pred ---hHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccCcCCHHHHHHHhcc
Q 020679 233 ---CQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDWELSAEELQKIEQI 294 (323)
Q Consensus 233 ---~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~ 294 (323)
...+..++.+++++++|+||+|++++| +++|+|+++++|+++|++++..+|++++++.|+++
T Consensus 219 ~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 219 GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 366889999999999999999999996 78999999999999999999889999999999863
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.2e-53 Score=386.56 Aligned_cols=266 Identities=24% Similarity=0.361 Sum_probs=227.7
Q ss_pred CCCCCCCCceeeCCCCCccCcccccccccCC-------CCChHHHHHHHHHHHHcCCCEEecCCCcC---CHHHHHHHHH
Q 020679 1 MKKEVSIPEAPLGSTGKTIPLVGFGTAQFPF-------GAATEVVKESVVHAIEVGYRHFDTAAIYQ---SEQPLGEAIA 70 (323)
Q Consensus 1 ~~~~~~m~~~~lg~tg~~vs~lglG~~~~~~-------~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~vG~~l~ 70 (323)
|.+.++-.++.|+ |++||+||||||++++ .+ .+++.++|+.|++.|||+||||+.|| +|+.+|++++
T Consensus 1 ~~~~~~~~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~-~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~ 77 (290)
T PRK10376 1 MSTIMSSGTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKD-RDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALH 77 (290)
T ss_pred CcccccCCceecC--CeeecccceeccccCCCCcCCCCCC-HHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHh
Confidence 4445555667776 8999999999999863 24 67899999999999999999999998 6899999996
Q ss_pred HHHHcCCCCCCCceEEeeecCC---------CCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCC-CCCCCCCCCCCCCC
Q 020679 71 EALRLGLIKSRNELFITSKLWL---------GHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGS-LKPGTGFPFNKEDI 140 (323)
Q Consensus 71 ~~~~~g~~~~R~~~~i~tK~~~---------~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~-~~~~~~~~~~~~~~ 140 (323)
. .|+++||+||++. .+.+++.+++++++||+||||||||+|++||++. ..|.
T Consensus 78 ~--------~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~---------- 139 (290)
T PRK10376 78 P--------YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPA---------- 139 (290)
T ss_pred c--------CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCC----------
Confidence 2 5999999999842 3467899999999999999999999999998632 1110
Q ss_pred CCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhh-HHHHHHHHHhCceEEEeccCC
Q 020679 141 VPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ-KKLRVFCEKKGIHITAYSPLG 219 (323)
Q Consensus 141 ~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~~l~ 219 (323)
.....++|++|++|+++||||+||+|||+.++++++.+.+. +.++|++||++.+. .+++++|+++||++++|+||+
T Consensus 140 -~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~--~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~ 216 (290)
T PRK10376 140 -EGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIAE--IVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLG 216 (290)
T ss_pred -CCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhCC--eEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCC
Confidence 12478899999999999999999999999999999887654 56899999998875 679999999999999999997
Q ss_pred CCCCCCCCCCccChHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccCcCCHHHHHHHhccCCC
Q 020679 220 AKGTRWGTNRVMECQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDWELSAEELQKIEQIPQY 297 (323)
Q Consensus 220 ~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~ 297 (323)
+ +. ....+.+.++|+++++|++|+||+|+++++ +++|+|+++++|+++|+++++++|++++++.|+++.+.
T Consensus 217 g-~~------~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 217 G-FT------PLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred C-CC------hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 4 31 123578999999999999999999999884 78899999999999999999999999999999987543
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.4e-53 Score=384.68 Aligned_cols=254 Identities=37% Similarity=0.589 Sum_probs=219.2
Q ss_pred cccccccccCC--CCChHHHHHHHHHHHHcCCCEEecCCCcC---CHHHHHHHHHHHHHcCCCCCCCceEEeeec-----
Q 020679 21 LVGFGTAQFPF--GAATEVVKESVVHAIEVGYRHFDTAAIYQ---SEQPLGEAIAEALRLGLIKSRNELFITSKL----- 90 (323)
Q Consensus 21 ~lglG~~~~~~--~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~----- 90 (323)
+||||||++++ .+ .+++.++|+.|++.|||+||||+.|| ||+.+|++|++. +. +|++++|+||+
T Consensus 1 ~l~lG~~~~~~~~~~-~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~~~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGERVS-EEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVYGDGK 74 (283)
T ss_dssp SBEEECTTBTTTTST-HHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEESSSS
T ss_pred CEEEEccccCCCCCC-HHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--cccccccccccccccc
Confidence 58999999985 56 89999999999999999999999993 899999999983 33 89999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCC
Q 020679 91 WLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFA 170 (323)
Q Consensus 91 ~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~ 170 (323)
+....+++.+++++++||++||+||+|+|++|||+...+ ...++|++|++|+++|+||+||||||+
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~--------------~~~~~~~~l~~l~~~G~ir~iGvs~~~ 140 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED--------------ALEEVWEALEELKKEGKIRHIGVSNFS 140 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS--------------HHHHHHHHHHHHHHTTSEEEEEEES--
T ss_pred ccccccccccccccccccccccccchhcccccccccccc--------------ccchhhhhhhhcccccccccccccccc
Confidence 556778999999999999999999999999999976432 378999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceeecccCChhh--hhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCc--------------cChH
Q 020679 171 CKKLERLLATAKIPPAVNQVELNPVW--QQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRV--------------MECQ 234 (323)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~--------------~~~~ 234 (323)
++.++.+.....++|+++|++||++. ...+++++|+++||++++|+|+++ |.|++.... ...+
T Consensus 141 ~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (283)
T PF00248_consen 141 PEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELAD 219 (283)
T ss_dssp HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhh
Confidence 99999997777889999999999993 348999999999999999999998 988754321 4457
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccCcCCHHHHHHHhccC
Q 020679 235 VLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDWELSAEELQKIEQIP 295 (323)
Q Consensus 235 ~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~ 295 (323)
.+.++++++++|++|+||+|+++++ .++|+|+++++|+++|+++++++||+++++.|+++.
T Consensus 220 ~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 220 ALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 8999999999999999999999875 899999999999999999999999999999999874
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=5.2e-51 Score=371.59 Aligned_cols=251 Identities=16% Similarity=0.202 Sum_probs=213.4
Q ss_pred CCccCcccccccccCC-----------CCChHHHHHHHHHHHHcCCCEEecCCCcC-CHHHHHHHHHHHHHcCCCCCCCc
Q 020679 16 GKTIPLVGFGTAQFPF-----------GAATEVVKESVVHAIEVGYRHFDTAAIYQ-SEQPLGEAIAEALRLGLIKSRNE 83 (323)
Q Consensus 16 g~~vs~lglG~~~~~~-----------~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~vG~~l~~~~~~g~~~~R~~ 83 (323)
+++||+||||||+||+ .+ .+++.++|+.|++.|||+||||+.|| ||+.+|++|+.. .+++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~-~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~ 73 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTP-EAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFR 73 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCC-HHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceE
Confidence 6789999999999873 25 78899999999999999999999999 899999999731 3567
Q ss_pred eEEeeecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccE
Q 020679 84 LFITSKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKS 163 (323)
Q Consensus 84 ~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~ 163 (323)
++|+||.. +.+++.+++++++||+|||+||||+|++|||+.... ...+++|++|++|+++||||+
T Consensus 74 ~~i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-------------~~~~~~~~~l~~l~~~Gkir~ 138 (292)
T PRK14863 74 VTLSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELFG-------------PHGAALWERLQALKDQGLFAK 138 (292)
T ss_pred eecccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC-------------cchHHHHHHHHHHHHcCCcce
Confidence 89999853 456789999999999999999999999999864211 113578999999999999999
Q ss_pred EEcCCCCHHHHHHHHHhCCCCceeecccCChhhhh---HHHHHHHHHhCceEEEeccCCCCCCCCCCCCc---------c
Q 020679 164 IGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ---KKLRVFCEKKGIHITAYSPLGAKGTRWGTNRV---------M 231 (323)
Q Consensus 164 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~---------~ 231 (323)
||+|||+..++.++... .+++++|++||+++++ .+++++|+++||++++|+||++ |+|++.... .
T Consensus 139 iGvSn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~ 215 (292)
T PRK14863 139 IGVSAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGASG 215 (292)
T ss_pred EeeeccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhhH
Confidence 99999999888877543 4678999999999985 3599999999999999999998 998754211 1
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccCcCCHHHHHHHh
Q 020679 232 ECQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDWELSAEELQKIE 292 (323)
Q Consensus 232 ~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~e~~~~l~ 292 (323)
....+.+++.++++|++|+||+|+++++ +++|+|+++++|+++|+++.+.+++++.+++|.
T Consensus 216 ~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 216 RLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 1244667788889999999999999998 678999999999999999998889888877765
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.4e-49 Score=338.10 Aligned_cols=268 Identities=27% Similarity=0.413 Sum_probs=237.8
Q ss_pred CCceeeCCCCCccCcccccccccCC--CCChHHHHHHHHHHHHcCCCEEecCCCcC---CHHHHHHHHHHHHHcCCCCCC
Q 020679 7 IPEAPLGSTGKTIPLVGFGTAQFPF--GAATEVVKESVVHAIEVGYRHFDTAAIYQ---SEQPLGEAIAEALRLGLIKSR 81 (323)
Q Consensus 7 m~~~~lg~tg~~vs~lglG~~~~~~--~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~vG~~l~~~~~~g~~~~R 81 (323)
|++..+++.|+++|+|.+|+|++.. .. .++....++.|++.|||+||-|+.|| +|+++|.+|+.. .+ -|
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~-~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~--p~---lR 74 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMS-ARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA--PG---LR 74 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCC-HHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC--hh---hh
Confidence 6788999889999999999999876 34 57899999999999999999999999 799999999854 23 69
Q ss_pred CceEEeeecCC------------CCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 020679 82 NELFITSKLWL------------GHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVW 149 (323)
Q Consensus 82 ~~~~i~tK~~~------------~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (323)
|++-|+||++. .+.|.++|..++|+||.+|+|||+|+++||+||.- ++.+++.
T Consensus 75 ekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL---------------md~eeVA 139 (298)
T COG4989 75 EKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL---------------MDAEEVA 139 (298)
T ss_pred hheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc---------------CCHHHHH
Confidence 99999999952 36688999999999999999999999999999863 5689999
Q ss_pred HHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhh---HHHHHHHHHhCceEEEeccCCCCCCCCC
Q 020679 150 EAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ---KKLRVFCEKKGIHITAYSPLGAKGTRWG 226 (323)
Q Consensus 150 ~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~~l~~~G~l~~ 226 (323)
+|+..|.+.||||++|||||++.+++-+-+.-....+.||+++|++... ...+++|+.+.|.+++||||++.|++++
T Consensus 140 eAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g 219 (298)
T COG4989 140 EAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG 219 (298)
T ss_pred HHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC
Confidence 9999999999999999999999999988887778888999999998875 6799999999999999999998333344
Q ss_pred CCCc-cChHHHHHHHHHcC-CCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccCcCCHHHHHHHhccC
Q 020679 227 TNRV-MECQVLKEIANARG-KSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDWELSAEELQKIEQIP 295 (323)
Q Consensus 227 ~~~~-~~~~~l~~ia~~~~-~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~ 295 (323)
.... .-.+++..+|.++| .|..+++++|++.+| ..||+|+.+++++++.++|++..||.++|-+|-.+.
T Consensus 220 ~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa 292 (298)
T COG4989 220 DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAA 292 (298)
T ss_pred CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHh
Confidence 2221 12578899999999 799999999999999 689999999999999999999999999999887654
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.9e-49 Score=354.93 Aligned_cols=286 Identities=24% Similarity=0.309 Sum_probs=241.4
Q ss_pred CCceeeCCCCCccCcccccccccCCC-----CChHHHHHHHHHHHHcCCCEEecCCCc--C-CHHHHHHHHHHHHHcCCC
Q 020679 7 IPEAPLGSTGKTIPLVGFGTAQFPFG-----AATEVVKESVVHAIEVGYRHFDTAAIY--Q-SEQPLGEAIAEALRLGLI 78 (323)
Q Consensus 7 m~~~~lg~tg~~vs~lglG~~~~~~~-----~~~~~~~~~l~~A~~~Gin~~DTA~~Y--g-sE~~vG~~l~~~~~~g~~ 78 (323)
|.||++|+||.++|.+|||||+++.. + .+.+.+++++|+++||||||||..| | ||..+|+||++.
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id-~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------ 73 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSID-EENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------ 73 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCcc-HHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc------
Confidence 78999999999999999999999762 5 8899999999999999999999999 6 899999999974
Q ss_pred CCCCceEEeeecCC-CCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 020679 79 KSRNELFITSKLWL-GHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQN 157 (323)
Q Consensus 79 ~~R~~~~i~tK~~~-~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 157 (323)
.|++|+++||+.+ ...+++.+++-++++|++||+||+|+|+||..+.. .|......++++.++++|+
T Consensus 74 -~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-----------~~~k~~~~g~~df~~kak~ 141 (391)
T COG1453 74 -YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-----------TWEKIERLGVFDFLEKAKA 141 (391)
T ss_pred -ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-----------HHHHHHccChHHHHHHHHh
Confidence 8999999999953 33467899999999999999999999999987541 1222222347899999999
Q ss_pred cCCccEEEcCCCCH-HHHHHHHHhCCCCceeecccCChhhhh----HHHHHHHHHhCceEEEeccCCCCCCCCCCCCccC
Q 020679 158 LGLTKSIGVSNFAC-KKLERLLATAKIPPAVNQVELNPVWQQ----KKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVME 232 (323)
Q Consensus 158 ~G~Ir~iGvs~~~~-~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~ 232 (323)
+||||++|+|.|+. +.+.+++.... ++++|+.||.+++. .+.+.+|.++|++|+.++|+.+ |.|... .
T Consensus 142 eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~~~----v 214 (391)
T COG1453 142 EGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLLYN----V 214 (391)
T ss_pred cCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcccC----C
Confidence 99999999999984 67888888766 55888888887765 2789999999999999999988 655332 2
Q ss_pred hHHHHHHHHHcC--CCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccC--c-CCHHHHHHHhccCCC---CCCcc
Q 020679 233 CQVLKEIANARG--KSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDW--E-LSAEELQKIEQIPQY---RGSRA 302 (323)
Q Consensus 233 ~~~l~~ia~~~~--~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~--~-L~~e~~~~l~~~~~~---~~~~~ 302 (323)
.+++.+++++++ .||+.+|+||++++| .++++|+++++|++|||+.++. | ||+++++.|.++.+. .-.-+
T Consensus 215 P~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~~~v~ 294 (391)
T COG1453 215 PEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYRESLKVP 294 (391)
T ss_pred CHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 468899999886 689999999999999 6889999999999999998874 4 999988777666553 33335
Q ss_pred cccccCCCCCCccccc
Q 020679 303 EVHVSEDGPYKSLEDL 318 (323)
Q Consensus 303 ~~~~~~~~~~~~~~~~ 318 (323)
.-.|..|-|||+++||
T Consensus 295 Ct~C~yC~PCP~gInI 310 (391)
T COG1453 295 CTGCRYCLPCPSGINI 310 (391)
T ss_pred CccccccCcCCCCCCh
Confidence 7778888889999886
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.3e-44 Score=308.40 Aligned_cols=264 Identities=21% Similarity=0.241 Sum_probs=218.5
Q ss_pred CCCCCCceeeCCCCCccCcccccccccCC----CCChHHHHHHHHHHHHcCCCEEecCCCcC---CHHHHHHHHHHHHHc
Q 020679 3 KEVSIPEAPLGSTGKTIPLVGFGTAQFPF----GAATEVVKESVVHAIEVGYRHFDTAAIYQ---SEQPLGEAIAEALRL 75 (323)
Q Consensus 3 ~~~~m~~~~lg~tg~~vs~lglG~~~~~~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~vG~~l~~~~~~ 75 (323)
|+..|.||.+|.||++||+||||++.++. .+ .++....+..|+.+|||+||||+-|| ||+.+|.++++.
T Consensus 18 ~vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~-~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~v--- 93 (342)
T KOG1576|consen 18 KVRRMEYRQLGSTGLRVSKLGFGGAALGQLFGDED-EEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDV--- 93 (342)
T ss_pred HHHHHHHhhcCCCcceeeeeeecchhhhhhcCCcc-hhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhC---
Confidence 46779999999999999999999988765 34 66666666679999999999999999 899999999975
Q ss_pred CCCCCCCceEEeeecCC--------CCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHH
Q 020679 76 GLIKSRNELFITSKLWL--------GHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEA 147 (323)
Q Consensus 76 g~~~~R~~~~i~tK~~~--------~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 147 (323)
+|+.+||+||++. -+++++.+++++++||+||++||+|++++|..+.... .++...|
T Consensus 94 ----PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~-----------ld~vl~E 158 (342)
T KOG1576|consen 94 ----PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPN-----------LDIVLNE 158 (342)
T ss_pred ----ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccccc-----------ccHHHHH
Confidence 9999999999964 3788999999999999999999999999998764311 1355889
Q ss_pred HHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeec--ccCChhhhh-HHHHHHHHHhCceEEEeccCCCCCCC
Q 020679 148 VWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQ--VELNPVWQQ-KKLRVFCEKKGIHITAYSPLGAKGTR 224 (323)
Q Consensus 148 ~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q--~~~~~~~~~-~~ll~~~~~~gi~via~~~l~~~G~l 224 (323)
++.+|+++|++||||+||++.++.+.+.++++......+++- ..|++.+.. -..+++.+..|++|+.-++++. |+|
T Consensus 159 tlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLL 237 (342)
T KOG1576|consen 159 TLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLL 237 (342)
T ss_pred HHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHh
Confidence 999999999999999999999999999999876654444544 455544433 4567778899999999999998 999
Q ss_pred CCCCCc---cCh-------HHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccCcCCHH
Q 020679 225 WGTNRV---MEC-------QVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDWELSAE 286 (323)
Q Consensus 225 ~~~~~~---~~~-------~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~e 286 (323)
+...+. -.. ..-.+.|++.|+....+|+.|.++.+ .++++|+++.++++.|+++-...||..
T Consensus 238 t~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~ 311 (342)
T KOG1576|consen 238 TNQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSK 311 (342)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccch
Confidence 854331 112 33445677889999999999999997 789999999999999999755577773
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.59 E-value=1.1e-07 Score=81.65 Aligned_cols=139 Identities=22% Similarity=0.328 Sum_probs=96.2
Q ss_pred CCCceEEeeecCCCCCChhhHHHHHHHHHHHcCC----CcccEE------EeeCCCCCCCCC---CCCCCCC----CCCC
Q 020679 80 SRNELFITSKLWLGHAHRQLVLPALQTSLKNLGL----EYIDLY------LIHFPGSLKPGT---GFPFNKE----DIVP 142 (323)
Q Consensus 80 ~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~----d~iDl~------~lH~p~~~~~~~---~~~~~~~----~~~~ 142 (323)
.++++-+..|.+..++.-..++...+..++-+-. ..+|.+ ++|--+-..++- ..+.+.. ....
T Consensus 73 ~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v~~lssv~ia~~sied~~n~~~ 152 (285)
T KOG3023|consen 73 KQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKVSGLSSVNIAYDSIEDIPNQEI 152 (285)
T ss_pred cccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecccCccchhccCChhhhcchhhH
Confidence 4677888888877777666677766665544321 122221 122111100100 0111111 1112
Q ss_pred CcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhh-hHHHHHHHHHhCceEEEeccC
Q 020679 143 LDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQ-QKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 143 ~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~~~ll~~~~~~gi~via~~~l 218 (323)
..+.++|+.||+++.+|+|..||+|.++..++++++..+++.|.++|+++.-++. ..++.++|.+|+|.++.++--
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCCc
Confidence 3467899999999999999999999999999999999999999999999988776 389999999999999987643
No 19
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=90.67 E-value=12 Score=35.41 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHcCCCEE-ecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeec----------CCCCCChhhHHHH
Q 020679 35 TEVVKESVVHAIEVGYRHF-DTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKL----------WLGHAHRQLVLPA 103 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~-DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~----------~~~~~~~~~i~~~ 103 (323)
.+.-.+=++.|++.|-..+ |-+ ..|.-..+-+.+-+. ..+-|.|-- ...+.+++.+.+.
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~~---------s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 76 IEEEVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILDA---------VPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRA 145 (423)
T ss_pred HHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHc---------CCCCccCccHHHHHHHhcCChhhCCHHHHHHH
Confidence 4555556799999997744 555 334433333333211 112122210 1235677888888
Q ss_pred HHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCC
Q 020679 104 LQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 183 (323)
Q Consensus 104 le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~ 183 (323)
+|+..+ |-+|++-+|.- -..+.++.++++|+ ..|+-+-...-+..++....
T Consensus 146 ie~qa~----dGVDfmTiH~G----------------------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~- 196 (423)
T TIGR00190 146 IEKQAK----DGVDFMTIHAG----------------------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH- 196 (423)
T ss_pred HHHHHH----hCCCEEEEccc----------------------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC-
Confidence 888877 66788999964 35688999999995 45555544445555444322
Q ss_pred CceeecccCChhhhh-HHHHHHHHHhCceEEEeccCC
Q 020679 184 PPAVNQVELNPVWQQ-KKLRVFCEKKGIHITAYSPLG 219 (323)
Q Consensus 184 ~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~~l~ 219 (323)
.=||+..+ ..+++.|++++|.+----.|.
T Consensus 197 -------~ENPlye~fD~lLeI~~~yDVtlSLGDglR 226 (423)
T TIGR00190 197 -------KENPLYKNFDYILEIAKEYDVTLSLGDGLR 226 (423)
T ss_pred -------CcCchHHHHHHHHHHHHHhCeeeeccCCcC
Confidence 33566555 789999999999885444443
No 20
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=89.61 E-value=17 Score=34.56 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHcCCCEE-ecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeee-------------cCCCCCChhhH
Q 020679 35 TEVVKESVVHAIEVGYRHF-DTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSK-------------LWLGHAHRQLV 100 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~-DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK-------------~~~~~~~~~~i 100 (323)
.+.-.+=++.|.+.|-..+ |-+. .|.-..+-+.+-+. ..+=|.|- -...+.+++.+
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLSt-ggdl~~iR~~il~~---------s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~ 145 (431)
T PRK13352 76 IEEELEKAKVAVKYGADTIMDLST-GGDLDEIRRAIIEA---------SPVPVGTVPIYQAAVEAARKYGSVVDMTEDDL 145 (431)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc---------CCCCCcChhHHHHHHHHHhcCCChhhCCHHHH
Confidence 4555556799999998754 5553 34333333322211 11111111 01235677888
Q ss_pred HHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHh
Q 020679 101 LPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLAT 180 (323)
Q Consensus 101 ~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~ 180 (323)
.+.+|+..+ +=+|++-+|.- -..+.++.++++|+ ..|+-+-...-+..++..
T Consensus 146 ~~~ie~qa~----~GVDfmTiHcG----------------------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~ 197 (431)
T PRK13352 146 FDVIEKQAK----DGVDFMTIHCG----------------------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLH 197 (431)
T ss_pred HHHHHHHHH----hCCCEEEEccc----------------------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHH
Confidence 888888877 66788999974 24578899999986 455555444445554433
Q ss_pred CCCCceeecccCChhhhh-HHHHHHHHHhCceEEEeccCC
Q 020679 181 AKIPPAVNQVELNPVWQQ-KKLRVFCEKKGIHITAYSPLG 219 (323)
Q Consensus 181 ~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~~l~ 219 (323)
.. .=||+..+ ..+++.|++++|.+----.|.
T Consensus 198 n~--------~ENPlye~fD~lLeI~~~yDVtlSLGDglR 229 (431)
T PRK13352 198 NN--------KENPLYEHFDYLLEILKEYDVTLSLGDGLR 229 (431)
T ss_pred cC--------CcCchHHHHHHHHHHHHHhCeeeeccCCcC
Confidence 22 34566655 789999999999885444443
No 21
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=88.84 E-value=8.5 Score=32.78 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=66.2
Q ss_pred HHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCC
Q 020679 104 LQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 183 (323)
Q Consensus 104 le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~ 183 (323)
+++.|....-+.+|.+.+..--. ....-.+.|+++..=|+=.-|++.||..+..+--+-..+-
T Consensus 64 ld~gL~~f~d~sFD~VIlsqtLQ-----------------~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~Gr 126 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQTLQ-----------------AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGR 126 (193)
T ss_pred HHHhHhhCCCCCccEEehHhHHH-----------------hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCC
Confidence 55566666666777766653211 1222334577777778888899999998877655443333
Q ss_pred CceeecccCChhhhh-------HHHHHHHHHhCceEEEeccCCC
Q 020679 184 PPAVNQVELNPVWQQ-------KKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 184 ~~~~~q~~~~~~~~~-------~~ll~~~~~~gi~via~~~l~~ 220 (323)
-|+.-..+|.-++-. ++.-++|++.|+.|.-..++..
T Consensus 127 mPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 127 MPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 344455565544321 7889999999999999999876
No 22
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=86.14 E-value=11 Score=33.67 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=68.7
Q ss_pred HHHHHHcCCccEEEc-CCCCHHHHHHHHHhCCCCceeecccCChhhhh--HHHHHHHHHhCceEEEeccCCCCCCCCCCC
Q 020679 152 MEECQNLGLTKSIGV-SNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRVFCEKKGIHITAYSPLGAKGTRWGTN 228 (323)
Q Consensus 152 L~~l~~~G~Ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~~l~~~G~l~~~~ 228 (323)
|.+-.++|+. .+|+ .......+.+++...+++++++-.+..+++.+ .+++..|+.+|+..+++-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4444445764 4553 22333455666666779988888888877665 6788899999999999877753
Q ss_pred CccChHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccC
Q 020679 229 RVMECQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDW 281 (323)
Q Consensus 229 ~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 281 (323)
...++.+|..| .+++|-..+.+|+++.+++..+
T Consensus 81 --------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 --------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12356667777 4567777888888877776665
No 23
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=84.47 E-value=17 Score=32.68 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=70.0
Q ss_pred HHHHHHcCCccEEEc-CCCCHHHHHHHHHhCCCCceeecccCChhhhh--HHHHHHHHHhCceEEEeccCCCCCCCCCCC
Q 020679 152 MEECQNLGLTKSIGV-SNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRVFCEKKGIHITAYSPLGAKGTRWGTN 228 (323)
Q Consensus 152 L~~l~~~G~Ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~~l~~~G~l~~~~ 228 (323)
|.+..++|+. .+|+ .......+.+++...+++++++-.+.++++.+ ..++..|+..|+..+++-|-..
T Consensus 9 lk~~L~~G~~-~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~-------- 79 (267)
T PRK10128 9 FKEGLRKGEV-QIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS-------- 79 (267)
T ss_pred HHHHHHcCCc-eEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC--------
Confidence 4444455765 3443 33333455565666679988888888887665 5688889999999888877543
Q ss_pred CccChHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccC
Q 020679 229 RVMECQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDW 281 (323)
Q Consensus 229 ~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 281 (323)
...++.+|..| ..++|-..|.++.++.+++..+
T Consensus 80 --------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 --------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred --------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 12467788887 4677888888888888888766
No 24
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=84.09 E-value=36 Score=31.70 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHcCCCEEec--CCCcC----CHHH--HHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHH
Q 020679 35 TEVVKESVVHAIEVGYRHFDT--AAIYQ----SEQP--LGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQT 106 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DT--A~~Yg----sE~~--vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~ 106 (323)
.++..+.+..+.+.|++.|-. +..|. -+.. .=+++++. -.+++.|...... ..+.+. ..+
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~-------~g~~~~l~vDaN~-~~~~~~----a~~ 207 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA-------VGPDVDLMVDANG-RWDLAE----AIR 207 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh-------hCCCCEEEEECCC-CCCHHH----HHH
Confidence 566777778888999998864 33331 0111 11233332 2245556666532 223222 223
Q ss_pred HHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCc
Q 020679 107 SLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPP 185 (323)
Q Consensus 107 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~ 185 (323)
-+++|. ..++.++..|.. .+.++.+..+++.-.+. ..|=|.++...+.++++....+
T Consensus 208 ~~~~l~--~~~i~~iEqP~~-------------------~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d- 265 (357)
T cd03316 208 LARALE--EYDLFWFEEPVP-------------------PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVD- 265 (357)
T ss_pred HHHHhC--ccCCCeEcCCCC-------------------ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCC-
Confidence 334442 235566776632 12456677788776665 4455667889999998876544
Q ss_pred eeecccCChh---hhhHHHHHHHHHhCceEEEec
Q 020679 186 AVNQVELNPV---WQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 186 ~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~ 216 (323)
++|+..... .+-..+...|+++|+.++..+
T Consensus 266 -~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 266 -IIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred -EEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 777665443 334789999999999988765
No 25
>PRK08392 hypothetical protein; Provisional
Probab=83.50 E-value=28 Score=30.00 Aligned_cols=183 Identities=14% Similarity=0.075 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCcC--CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCC
Q 020679 36 EVVKESVVHAIEVGYRHFDTAAIYQ--SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGL 113 (323)
Q Consensus 36 ~~~~~~l~~A~~~Gin~~DTA~~Yg--sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~ 113 (323)
....+.++.|.+.|++.|=.+++.. ...-+-..+++..+... +.+=++++..-+.... .. ....++.+++ .
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~-~~~i~il~GiE~~~~~---~~-~~~~~~~~~~--~ 86 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGE-ESEIVVLAGIEANITP---NG-VDITDDFAKK--L 86 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhh-ccCceEEEeEEeeecC---Cc-chhHHHHHhh--C
Confidence 3467889999999999996666643 11223333332211110 0111233333332211 11 2333444443 3
Q ss_pred CcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCC-------C-HHHHHHHHHh---CC
Q 020679 114 EYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNF-------A-CKKLERLLAT---AK 182 (323)
Q Consensus 114 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~-------~-~~~l~~~~~~---~~ 182 (323)
|++ +.-+|+... + .....-.+.+.++.+.|.+.-+|=-.. . .+.++++++. .+
T Consensus 87 D~v-I~SvH~~~~--~-------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g 150 (215)
T PRK08392 87 DYV-IASVHEWFG--R-------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG 150 (215)
T ss_pred CEE-EEEeecCcC--C-------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC
Confidence 555 556784311 1 124567788888889998877775321 1 1233433332 22
Q ss_pred CCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHH
Q 020679 183 IPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQV 250 (323)
Q Consensus 183 ~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~ 250 (323)
....+|- ....+..+++..|++.|+.++.-|=-.. +..+-..+...+++++.|.++.++
T Consensus 151 ~~lEiNt---~~~~p~~~~l~~~~~~G~~~~igSDAH~------~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 151 KAFEISS---RYRVPDLEFIRECIKRGIKLTFASDAHR------PEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred CEEEEeC---CCCCCCHHHHHHHHHcCCEEEEeCCCCC------hHHCCcHHHHHHHHHHcCCCHHHe
Confidence 3333332 1123446789999999987654333221 111111345667777777776653
No 26
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=83.30 E-value=13 Score=33.67 Aligned_cols=116 Identities=15% Similarity=0.226 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCC--C----CceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCC
Q 020679 150 EAMEECQNLGLTKSIGVSNFACKKLERLLATAK--I----PPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGT 223 (323)
Q Consensus 150 ~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~--~----~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~ 223 (323)
+.++.|....++..+-=++.+.+.+..+.+... + -+..+.+-+--..|++.+.+++++-++-++.-+.-.
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nS---- 220 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNS---- 220 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCC----
Confidence 345555445666666666677766665544221 1 122334444444566889999999888887733333
Q ss_pred CCCCCCccChHHHHHHHHHcCC------CHHHHHHHHHHhCC-cEEEeCCCCHHHHHHhh
Q 020679 224 RWGTNRVMECQVLKEIANARGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKENL 276 (323)
Q Consensus 224 l~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~i~g~~~~~~l~enl 276 (323)
-...+|.++|++++. ++.++-..|.-... +.+..|+|+|+.+-+.+
T Consensus 221 -------sNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 221 -------SNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred -------chHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 245789999999873 78999999998776 77889999998775543
No 27
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.52 E-value=7.2 Score=37.08 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHc--CC
Q 020679 36 EVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNL--GL 113 (323)
Q Consensus 36 ~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~L--g~ 113 (323)
-....++++|++.|++++|||........+....+ +..+.+..-++....-...+ .....+.+ .+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~----------~Agit~v~~~G~dPGi~nv~---a~~a~~~~~~~i 145 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK----------KAGITAVLGCGFDPGITNVL---AAYAAKELFDEI 145 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH----------HcCeEEEcccCcCcchHHHH---HHHHHHHhhccc
Confidence 44458999999999999999987655333333322 22344555554322211222 22222222 58
Q ss_pred CcccEEEeeCCCCC
Q 020679 114 EYIDLYLIHFPGSL 127 (323)
Q Consensus 114 d~iDl~~lH~p~~~ 127 (323)
+++|+|..+.|...
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 99999999988764
No 28
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=81.96 E-value=19 Score=32.02 Aligned_cols=97 Identities=13% Similarity=0.005 Sum_probs=64.6
Q ss_pred HHcCCccEEEc-CCCCHHHHHHHHHhCCCCceeecccCChhhhh--HHHHHHHHHhCceEEEeccCCCCCCCCCCCCccC
Q 020679 156 QNLGLTKSIGV-SNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVME 232 (323)
Q Consensus 156 ~~~G~Ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~ 232 (323)
.++|+. .+|+ ++.....+.+++...+++++++-.+..+++.+ ..++..|+..|+..+++-|-..
T Consensus 7 l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~------------ 73 (249)
T TIGR03239 7 LLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE------------ 73 (249)
T ss_pred HHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC------------
Confidence 334654 3443 33333455566666779988888888887665 6788888999999998877643
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccC
Q 020679 233 CQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDW 281 (323)
Q Consensus 233 ~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 281 (323)
...++.+|..| .+++|-..|.+++++.+++..+
T Consensus 74 ----------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ----------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ----------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 11345566666 4566777777777777766555
No 29
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=81.56 E-value=18 Score=33.11 Aligned_cols=115 Identities=11% Similarity=0.212 Sum_probs=74.1
Q ss_pred HHHHH--HHcCCccEEEcCCCCHHHHHHHHHhCC--CC-c-e--eecccCChhhhhHHHHHHHHHhCceEEEeccCCCCC
Q 020679 151 AMEEC--QNLGLTKSIGVSNFACKKLERLLATAK--IP-P-A--VNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKG 222 (323)
Q Consensus 151 ~L~~l--~~~G~Ir~iGvs~~~~~~l~~~~~~~~--~~-~-~--~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G 222 (323)
.++.| ....++..+-=++.+.+.++++.+... ++ . . ++.+-+-...|++.+.+++++.+.-++.-+.-.+
T Consensus 146 e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-- 223 (298)
T PRK01045 146 DVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS-- 223 (298)
T ss_pred HHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc--
Confidence 34444 233566666666677776666554321 11 1 1 2222222234567889999999988887443332
Q ss_pred CCCCCCCccChHHHHHHHHHcCC------CHHHHHHHHHHhCC-cEEEeCCCCHHHHHHhh
Q 020679 223 TRWGTNRVMECQVLKEIANARGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKENL 276 (323)
Q Consensus 223 ~l~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~i~g~~~~~~l~enl 276 (323)
...+|.++|++++. ++.++-..|+.... +.+..|+|+|+.+-+.+
T Consensus 224 ---------NT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 224 ---------NSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred ---------cHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 45689999999873 78999999997666 77889999998665433
No 30
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=81.54 E-value=43 Score=30.69 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHHH--HHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQPL--GEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLG 112 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~v--G~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg 112 (323)
.++..+.++.+.+.|++.|+.--.-..++.+ =+++++ .. . ++-|.-+... ..+.+. ...+-+.|+.+
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~----~~--g--~~~l~vD~n~-~~~~~~-A~~~~~~l~~~- 203 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIRE----AA--P--DARLRVDANQ-GWTPEE-AVELLRELAEL- 203 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHH----hC--C--CCeEEEeCCC-CcCHHH-HHHHHHHHHhc-
Confidence 5677788888899999999874311112221 123332 21 2 4567777643 223332 22333444544
Q ss_pred CCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeeccc
Q 020679 113 LEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVE 191 (323)
Q Consensus 113 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~ 191 (323)
++.++-.|.. ..-++.+.+|++...|. ..|=+-++...+.++++....+ ++|..
T Consensus 204 ----~l~~iEeP~~-------------------~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d--~v~~~ 258 (316)
T cd03319 204 ----GVELIEQPVP-------------------AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYD--GINIK 258 (316)
T ss_pred ----CCCEEECCCC-------------------CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCC--EEEEe
Confidence 4445555532 12356677788887776 4456667888999998876655 66665
Q ss_pred CChh---hhhHHHHHHHHHhCceEEEeccCCC
Q 020679 192 LNPV---WQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 192 ~~~~---~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
.... .+-.++..+|+++|+.++..+-+.+
T Consensus 259 ~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~ 290 (316)
T cd03319 259 LMKTGGLTEALRIADLARAAGLKVMVGCMVES 290 (316)
T ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEECchhh
Confidence 4442 2336889999999999999765543
No 31
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=78.71 E-value=11 Score=34.12 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=66.3
Q ss_pred CCccEEEcCCCCHHHHHHHHHhCC--CCce----eecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccC
Q 020679 159 GLTKSIGVSNFACKKLERLLATAK--IPPA----VNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVME 232 (323)
Q Consensus 159 G~Ir~iGvs~~~~~~l~~~~~~~~--~~~~----~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~ 232 (323)
+++-.+.=++++.+.+.++.+... ++-. .+.+-+--..|++.+.++|++-++-++.-+.-+ -.
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S-----------sN 223 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS-----------SN 223 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT------------HH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC-----------cc
Confidence 478888888888777666554321 2111 222222223455788888998887777633332 24
Q ss_pred hHHHHHHHHHcCC------CHHHHHHHHHHhCC-cEEEeCCCCHHHHHHhh
Q 020679 233 CQVLKEIANARGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKENL 276 (323)
Q Consensus 233 ~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~i~g~~~~~~l~enl 276 (323)
..+|.++|++++. ++.++...|+-... +.+..|+|+|+.+-+.+
T Consensus 224 T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 224 TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 5789999999874 78999999998887 78889999998876654
No 32
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=77.85 E-value=34 Score=33.76 Aligned_cols=127 Identities=10% Similarity=0.082 Sum_probs=76.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCccEEEcCC----CCHHHHHHHHH----hCCCCce-eecccCChhhhhHHHHHHHHHhCce
Q 020679 141 VPLDYEAVWEAMEECQNLGLTKSIGVSN----FACKKLERLLA----TAKIPPA-VNQVELNPVWQQKKLRVFCEKKGIH 211 (323)
Q Consensus 141 ~~~~~~~~~~~L~~l~~~G~Ir~iGvs~----~~~~~l~~~~~----~~~~~~~-~~q~~~~~~~~~~~ll~~~~~~gi~ 211 (323)
...+.+.+++.++.++++.-++.+-+.. .+.+.+.++++ ....+.. ..+...+....+.++++..++.|+.
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~ 299 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLV 299 (497)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCc
Confidence 3456889999999998876688876653 23344443333 2212222 2344444444467899999999987
Q ss_pred EEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHHHHHHHHhCC----cEEEeCC--CCHHHHHHhhcc
Q 020679 212 ITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQVSLRWVYQQG----VSLVVKS--FNKERMKENLDI 278 (323)
Q Consensus 212 via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~----~~~i~g~--~~~~~l~enl~a 278 (323)
-+..+.=++ ..+.++.+.+.+...-..-+++.+.+.| ...|+|. .+.+.+++.++-
T Consensus 300 ~v~iGiES~-----------~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~ 361 (497)
T TIGR02026 300 HISLGTEAA-----------AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQ 361 (497)
T ss_pred EEEEccccC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHH
Confidence 776555443 3445555544443334445677777777 2456773 667777777653
No 33
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=77.72 E-value=19 Score=32.70 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=73.5
Q ss_pred HHHHHcCCccEEEcCCCCHHHHHHHHHhCC--C-Cc-eeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCC
Q 020679 153 EECQNLGLTKSIGVSNFACKKLERLLATAK--I-PP-AVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTN 228 (323)
Q Consensus 153 ~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~--~-~~-~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~ 228 (323)
+.+.-..++..+-=++.+.+.+.++++... + .. ..+.+.+.-..|++.+.+++++.++-++.-+.-.+
T Consensus 151 ~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-------- 222 (281)
T PRK12360 151 ENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSS-------- 222 (281)
T ss_pred hhCccccCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc--------
Confidence 333333555556566667766665544321 1 11 12233333334567889999998988887444332
Q ss_pred CccChHHHHHHHHHcCC------CHHHHHHHHHHhCC-cEEEeCCCCHHHHHHhh
Q 020679 229 RVMECQVLKEIANARGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKENL 276 (323)
Q Consensus 229 ~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~i~g~~~~~~l~enl 276 (323)
...+|.++|.+.+. ++.++-..|..... +.+..|+|+|+.+-+.+
T Consensus 223 ---NT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 223 ---NTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred ---cHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 45689999998874 78899899998776 77889999998775543
No 34
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=77.63 E-value=43 Score=32.27 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=62.9
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCC-----CcccEEEeeCCCCCCCCCC
Q 020679 58 IYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGL-----EYIDLYLIHFPGSLKPGTG 132 (323)
Q Consensus 58 ~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~-----d~iDl~~lH~p~~~~~~~~ 132 (323)
.||.++.+-+++++..+.- +.+-++|.|-+.+. -+-..++...++++. ..+.++.+|.|.....
T Consensus 62 V~Gg~~~L~~~i~~~~~~~---~p~~I~v~~tC~~~-----liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~--- 130 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRY---KPDVIGVLTTCLTE-----TIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGS--- 130 (428)
T ss_pred eECcHHHHHHHHHHHHHhc---CCCEEEEECCcchh-----hcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCc---
Confidence 4678888889998876532 44556777766332 122224444444432 2356777887764321
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHH-------HHcCCccEEEcCCC---CHHHHHHHHHhCCCCcee
Q 020679 133 FPFNKEDIVPLDYEAVWEAMEEC-------QNLGLTKSIGVSNF---ACKKLERLLATAKIPPAV 187 (323)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~L~~l-------~~~G~Ir~iGvs~~---~~~~l~~~~~~~~~~~~~ 187 (323)
. ....+.++++|-+. ++.++|.-||-++. +.+.+.++++..++++..
T Consensus 131 ------~--~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 131 ------H--ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred ------H--HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 0 01233344444332 24567888876664 357788888887766433
No 35
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=76.47 E-value=37 Score=34.59 Aligned_cols=145 Identities=16% Similarity=0.193 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLE 114 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d 114 (323)
.+.+.++++.|-|.|++.+- .|.-+.. +.-=+. +-|+-|+..|..++-. ..-.+.+..+.-+..
T Consensus 42 gEIaIRvFRa~tEL~~~tvA---iYseqD~-~sMHRq--------KADEaY~iGk~l~PV~----AYL~ideii~iak~~ 105 (1176)
T KOG0369|consen 42 GEIAIRVFRAATELSMRTVA---IYSEQDR-LSMHRQ--------KADEAYLIGKGLPPVG----AYLAIDEIISIAKKH 105 (1176)
T ss_pred CcchhHHHHHHhhhcceEEE---EEeccch-hhhhhh--------ccccceecccCCCchh----hhhhHHHHHHHHHHc
Confidence 36788999999999999874 6742222 222121 5788899999754432 233333333333334
Q ss_pred cccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHH---------HHhCCCCc
Q 020679 115 YIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERL---------LATAKIPP 185 (323)
Q Consensus 115 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~---------~~~~~~~~ 185 (323)
-+|. +|--..+ +.+--+.-.+.++.| |++||=| ++.++.+ .-.+.++
T Consensus 106 ~vda--vHPGYGF-----------------LSErsdFA~av~~AG-i~fiGPs---peVi~~mGDKv~AR~~Ai~agVp- 161 (1176)
T KOG0369|consen 106 NVDA--VHPGYGF-----------------LSERSDFAQAVQDAG-IRFIGPS---PEVIDSMGDKVAARAIAIEAGVP- 161 (1176)
T ss_pred CCCe--ecCCccc-----------------cccchHHHHHHHhcC-ceEeCCC---HHHHHHhhhHHHHHHHHHHcCCC-
Confidence 4555 5621111 122223344455554 7899987 3443322 1123333
Q ss_pred eeecccCChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 186 AVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 186 ~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
++--.-.+...-++.++||+++|..+|....+++
T Consensus 162 -vVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGG 195 (1176)
T KOG0369|consen 162 -VVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGG 195 (1176)
T ss_pred -ccCCCCCCcccHHHHHHHHHhcCCcEEEeecccC
Confidence 3332333333347899999999999999999987
No 36
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=74.50 E-value=30 Score=33.35 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=45.1
Q ss_pred CCCCCChhhHHHHHHHHHHHcCCCcccEEEee-CCCCCCCCCCCCCCCCCCCCCcH---HHHHHHH-HHHHHcCCccEEE
Q 020679 91 WLGHAHRQLVLPALQTSLKNLGLEYIDLYLIH-FPGSLKPGTGFPFNKEDIVPLDY---EAVWEAM-EECQNLGLTKSIG 165 (323)
Q Consensus 91 ~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~L-~~l~~~G~Ir~iG 165 (323)
+.+..+.+.+.+.+++.+. |+.|+|.+|.+- -|....... ..+... ..+. .+.++.. +.|.+.|. +.||
T Consensus 197 glP~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~--~~~~~~--lP~~d~~~~~~~~~~e~L~~~Gy-~~ye 270 (416)
T COG0635 197 GLPGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQR--KIKGKA--LPDEDEKADMYELVEELLEKAGY-RQYE 270 (416)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhh--cccCCC--CcChHHHHHHHHHHHHHHHHCCC-cEEe
Confidence 3455677888888888877 889999999764 332211100 000000 1112 2445544 44667777 9999
Q ss_pred cCCCCH
Q 020679 166 VSNFAC 171 (323)
Q Consensus 166 vs~~~~ 171 (323)
+|||..
T Consensus 271 isnfa~ 276 (416)
T COG0635 271 ISNFAK 276 (416)
T ss_pred echhcC
Confidence 999986
No 37
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=73.79 E-value=68 Score=28.84 Aligned_cols=137 Identities=19% Similarity=0.127 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHHcCCccEEEcCCCC-H---HHHHH---HHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEec
Q 020679 144 DYEAVWEAMEECQNLGLTKSIGVSNFA-C---KKLER---LLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 144 ~~~~~~~~L~~l~~~G~Ir~iGvs~~~-~---~~l~~---~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~ 216 (323)
..+.+++.+++.++++.---|++-+|- + ..+++ .++..+++-.++ +=-|.....++.+.|+++||..+..-
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv--pDLP~ee~~~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV--PDLPPEESDELLKAAEKHGIDPIFLV 154 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe--CCCChHHHHHHHHHHHHcCCcEEEEe
Confidence 467888889999977655455544432 1 22333 333344443332 32233444689999999999998764
Q ss_pred cCCCCCCCCCCCCccChHHHHHHHHHc----------CCC--------HHHHHHHHHHhCC---cEEEeCCCCHHHHHHh
Q 020679 217 PLGAKGTRWGTNRVMECQVLKEIANAR----------GKS--------VAQVSLRWVYQQG---VSLVVKSFNKERMKEN 275 (323)
Q Consensus 217 ~l~~~G~l~~~~~~~~~~~l~~ia~~~----------~~s--------~~q~al~~~l~~~---~~~i~g~~~~~~l~en 275 (323)
+-.. ..++++++++.- |+| ...-.++.+.++- ..+=+|.++++|+++.
T Consensus 155 aPtt-----------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v 223 (265)
T COG0159 155 APTT-----------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQV 223 (265)
T ss_pred CCCC-----------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHH
Confidence 4433 334555554432 111 1344455555543 3444677888888887
Q ss_pred hccccC-cCCHHHHHHHhc
Q 020679 276 LDIFDW-ELSAEELQKIEQ 293 (323)
Q Consensus 276 l~a~~~-~L~~e~~~~l~~ 293 (323)
.++.+- ---.+-++.|++
T Consensus 224 ~~~ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 224 AEAADGVIVGSAIVKIIEE 242 (265)
T ss_pred HHhCCeEEEcHHHHHHHHh
Confidence 776542 334444444443
No 38
>PRK13796 GTPase YqeH; Provisional
Probab=72.76 E-value=86 Score=29.55 Aligned_cols=119 Identities=19% Similarity=0.167 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHcC---CCEEecCCCcCC-HHHHHHHHHHHHHcCCCCCCCceEEeeecCC--CCCChhhHHHHHHHHH
Q 020679 35 TEVVKESVVHAIEVG---YRHFDTAAIYQS-EQPLGEAIAEALRLGLIKSRNELFITSKLWL--GHAHRQLVLPALQTSL 108 (323)
Q Consensus 35 ~~~~~~~l~~A~~~G---in~~DTA~~Ygs-E~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~--~~~~~~~i~~~le~SL 108 (323)
.++..++++..-+.- +-.+|..+.-++ ...+.+.. + .+.-++|.+|.-. .....+.+.+.+....
T Consensus 56 ~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~------~---~kpviLViNK~DLl~~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 56 DDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV------G---NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA 126 (365)
T ss_pred HHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh------C---CCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence 566777777766555 556786664443 22222221 2 4567889999732 2223455666666667
Q ss_pred HHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHH
Q 020679 109 KNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLL 178 (323)
Q Consensus 109 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~ 178 (323)
+.+|....+++.+..-.. ...+++++.+.+..+.+.+-.+|.+|..-..+-..+
T Consensus 127 k~~g~~~~~v~~vSAk~g----------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 127 KELGLRPVDVVLISAQKG----------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HhcCCCcCcEEEEECCCC----------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 777765557777664321 237788888888888888999999999866654433
No 39
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=72.43 E-value=24 Score=31.92 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=77.8
Q ss_pred HHHHHHHHHH--HcCCccEEEcCCCCHHHHHHHHHhCC--C----CceeecccCChhhhhHHHHHHHHHhCceEEEeccC
Q 020679 147 AVWEAMEECQ--NLGLTKSIGVSNFACKKLERLLATAK--I----PPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 147 ~~~~~L~~l~--~~G~Ir~iGvs~~~~~~l~~~~~~~~--~----~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l 218 (323)
+..+.+..|. ..-++.++-=.+.+.+...+.++... + .|..+-+.|--.++++.+.+.+.+-++-++.-++-
T Consensus 144 e~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~n 223 (294)
T COG0761 144 ESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKN 223 (294)
T ss_pred ecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCC
Confidence 3444445543 22244444444445555444433221 2 23334444444566788899999988888886666
Q ss_pred CCCCCCCCCCCccChHHHHHHHHHcCC------CHHHHHHHHHHhCC-cEEEeCCCCHHHHHHhh
Q 020679 219 GAKGTRWGTNRVMECQVLKEIANARGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKENL 276 (323)
Q Consensus 219 ~~~G~l~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~i~g~~~~~~l~enl 276 (323)
.+ ...+|.++|++++. ++.++=..|.-... +.+-.|+|+|+.|-+++
T Consensus 224 SS-----------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 224 SS-----------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred Cc-----------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 54 46789999999986 68888899998876 67789999999877655
No 40
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=70.51 E-value=63 Score=28.68 Aligned_cols=99 Identities=14% Similarity=0.009 Sum_probs=63.3
Q ss_pred HHHHHcCCccEEEc--CCCCHHHHHHHHHhCCCCceeecccCChhhhh--HHHHHHHHHhCceEEEeccCCCCCCCCCCC
Q 020679 153 EECQNLGLTKSIGV--SNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRVFCEKKGIHITAYSPLGAKGTRWGTN 228 (323)
Q Consensus 153 ~~l~~~G~Ir~iGv--s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~~l~~~G~l~~~~ 228 (323)
.+..++|+. .+|+ ...++..++. +...+++..++-.+.++.+.+ ..++..|+.+|+.++++-|-..
T Consensus 4 k~~l~~g~~-~~g~~~~~~~p~~~e~-~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~-------- 73 (249)
T TIGR02311 4 KQALKEGQP-QIGLWLGLADPYAAEI-CAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD-------- 73 (249)
T ss_pred HHHHHCCCc-eEEEEEeCCCcHHHHH-HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC--------
Confidence 344455774 3443 3334444444 455568888887777776543 4567777788888888755432
Q ss_pred CccChHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCCCCHHHHHHhhccccC
Q 020679 229 RVMECQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFDW 281 (323)
Q Consensus 229 ~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 281 (323)
+ .-++.+|..| .+++|-..+++++++.+++..+
T Consensus 74 ------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 ------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred ------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1467777777 4677888888888888777664
No 41
>PRK08609 hypothetical protein; Provisional
Probab=68.91 E-value=1.3e+02 Score=30.22 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCCCEEecCCCcC--------CHHHHHHHHHHH--HHcCCCCCCCceEEeeecCCCCCChhhHHHHHHH
Q 020679 37 VVKESVVHAIEVGYRHFDTAAIYQ--------SEQPLGEAIAEA--LRLGLIKSRNELFITSKLWLGHAHRQLVLPALQT 106 (323)
Q Consensus 37 ~~~~~l~~A~~~Gin~~DTA~~Yg--------sE~~vG~~l~~~--~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~ 106 (323)
...++++.|.+.|+++|=.++++. +...+-..+++. ++... ..=+++...-+... ++....-.+.
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~--~~i~Il~GiEv~i~---~~g~~d~~~~ 424 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKY--PEIDILSGIEMDIL---PDGSLDYDDE 424 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEEEEeec---CCcchhhcHH
Confidence 366799999999999997777752 222222222211 11110 11134444443221 1122222333
Q ss_pred HHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCC------CC--HHHHHHHH
Q 020679 107 SLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSN------FA--CKKLERLL 178 (323)
Q Consensus 107 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~------~~--~~~l~~~~ 178 (323)
.|.. .||+ +.-+|++.. .+.+++++.+.++.+.|.+.-||=-. .. ...+++++
T Consensus 425 ~L~~--~D~v-I~SvH~~~~----------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~ 485 (570)
T PRK08609 425 VLAE--LDYV-IAAIHSSFS----------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLI 485 (570)
T ss_pred HHHh--hCEE-EEEeecCCC----------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHH
Confidence 4544 4565 667786521 12567788999999999988887554 11 23334443
Q ss_pred HhCCCCceeecccCChhh--hhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHH
Q 020679 179 ATAKIPPAVNQVELNPVW--QQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQV 250 (323)
Q Consensus 179 ~~~~~~~~~~q~~~~~~~--~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~ 250 (323)
+.+.-.-.++|++-+.+. ....++..|.+.|+.++.-|--.. +..+-..+.-..+|++-+.++.++
T Consensus 486 ~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~------~~~l~~~~~~v~~ar~~~~~~~~v 553 (570)
T PRK08609 486 ELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHH------TEMLDDMKYGVATARKGWIQKDRV 553 (570)
T ss_pred HHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCC------hhhhCcHHHHHHHHHHcCCCHHHc
Confidence 332111235555554432 236788999999987654333322 122333455666777777666553
No 42
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=68.54 E-value=1.2e+02 Score=29.55 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=61.5
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCCCC-CCceEEeeecCCCCCChhhHHHHHHHHHHHcCCC----cccEEEeeCCCCCCCC
Q 020679 56 AAIYQSEQPLGEAIAEALRLGLIKS-RNELFITSKLWLGHAHRQLVLPALQTSLKNLGLE----YIDLYLIHFPGSLKPG 130 (323)
Q Consensus 56 A~~YgsE~~vG~~l~~~~~~g~~~~-R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d----~iDl~~lH~p~~~~~~ 130 (323)
.-.||.|+.|-++|++..+.. + .+-++|.|-+.+.- -.+.+..-+++.-++++-+ .+.++.+|.|+....
T Consensus 65 d~VfGG~~~L~~~I~~~~~~~---~~p~~I~V~tTC~~ei-IGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs- 139 (454)
T cd01973 65 SAVFGGAKRVEEGVLVLARRY---PDLRVIPIITTCSTEI-IGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS- 139 (454)
T ss_pred ceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHhh-hccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC-
Confidence 346788888888988865432 2 34467777764321 1233444444333323211 467888998875421
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHH-HHH----cCCccEEEcCCC--CHHHHHHHHHhCCCCce
Q 020679 131 TGFPFNKEDIVPLDYEAVWEAMEE-CQN----LGLTKSIGVSNF--ACKKLERLLATAKIPPA 186 (323)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~L~~-l~~----~G~Ir~iGvs~~--~~~~l~~~~~~~~~~~~ 186 (323)
. ....+.+++++-+ +.. +++|.-||-.+. +.+.++++++..++.+.
T Consensus 140 --------~--~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~ 192 (454)
T cd01973 140 --------M--VTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEAN 192 (454)
T ss_pred --------H--HHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 0 0112233333322 211 467888874432 34667778887766643
No 43
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=68.50 E-value=73 Score=28.53 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHH
Q 020679 97 RQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLER 176 (323)
Q Consensus 97 ~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~ 176 (323)
.+.+.+...+.. .-|.+.||+-.--.+ ....+.+...++.+++.-. .-|.+-+++++.++.
T Consensus 24 ~~~i~~~A~~~~-~~GAdiIDVg~~~~~-----------------~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~ea 84 (261)
T PRK07535 24 AAFIQKLALKQA-EAGADYLDVNAGTAV-----------------EEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEA 84 (261)
T ss_pred HHHHHHHHHHHH-HCCCCEEEECCCCCc-----------------hhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHH
Confidence 355555555543 579999998532111 0113455566666665422 248888999999999
Q ss_pred HHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEecc
Q 020679 177 LLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 177 ~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~ 217 (323)
+++.+...+.+|-+.... .+.+.+++.++++|+.++....
T Consensus 85 aL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 85 GLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 999855455666544321 2246789999999999998654
No 44
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=68.14 E-value=1.1e+02 Score=29.03 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=68.8
Q ss_pred hhHHHHHHHHH-----------HHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHc-CCccEEE
Q 020679 98 QLVLPALQTSL-----------KNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNL-GLTKSIG 165 (323)
Q Consensus 98 ~~i~~~le~SL-----------~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~Ir~iG 165 (323)
+.+.+.++... +.+ .+|++.||.-..+..+. +...++..+..++..+. +.=--|+
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~---~aD~Ialr~~S~DP~~~----------d~~~~e~a~~vk~V~~av~vPLIL~ 194 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEF---GADMVTIHLISTDPKLD----------DKSPSEAAKVLEDVLQAVDVPIVIG 194 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh---CCCEEEEEecCCCcccc----------ccCHHHHHHHHHHHHHhCCCCEEEe
Confidence 55666666544 445 45888888653321111 12356677777776443 3333444
Q ss_pred cC---CCCHHHHHHHHHhCCC-CceeecccCChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 166 VS---NFACKKLERLLATAKI-PPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 166 vs---~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
-| ..+++.++.+++.+.. .|.++-..... +-+.+.+.|+++|..++++++..-
T Consensus 195 gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 195 GSGNPEKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred CCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH
Confidence 44 4578899999998765 66666444331 236799999999999999998754
No 45
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=67.91 E-value=1.1e+02 Score=28.93 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHH---HHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHc
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQP---LGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNL 111 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~---vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~L 111 (323)
.....+.|+.++++|+- ++.|++++. |-.|.++.-...+ +.+.++++.- +...+.-..+.|
T Consensus 40 pp~i~~Al~~rvdhGvf----GY~~~~~~~~~ai~~w~~~r~~~~i--~~e~i~~~p~----------VVpgi~~~I~~~ 103 (388)
T COG1168 40 PPEIIEALRERVDHGVF----GYPYGSDELYAAIAHWFKQRHQWEI--KPEWIVFVPG----------VVPGISLAIRAL 103 (388)
T ss_pred CHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHhcCCCC--CcceEEEcCc----------chHhHHHHHHHh
Confidence 56788899999999973 445666544 3344443212222 3333333222 333344444433
Q ss_pred CCCcccEEEeeCCCC
Q 020679 112 GLEYIDLYLIHFPGS 126 (323)
Q Consensus 112 g~d~iDl~~lH~p~~ 126 (323)
|+-=|-+.++.|..
T Consensus 104 -T~~gd~Vvi~tPvY 117 (388)
T COG1168 104 -TKPGDGVVIQTPVY 117 (388)
T ss_pred -CcCCCeeEecCCCc
Confidence 24447788887753
No 46
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=67.50 E-value=89 Score=27.63 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=43.8
Q ss_pred CCCCccCccccccc---ccCCCC--ChHHHHHHHHHH----HHcCCCEEecCCCcC------CHHHHHHH---HHHHHHc
Q 020679 14 STGKTIPLVGFGTA---QFPFGA--ATEVVKESVVHA----IEVGYRHFDTAAIYQ------SEQPLGEA---IAEALRL 75 (323)
Q Consensus 14 ~tg~~vs~lglG~~---~~~~~~--~~~~~~~~l~~A----~~~Gin~~DTA~~Yg------sE~~vG~~---l~~~~~~ 75 (323)
.||+.+|.+||.+- .||..| ..+++.+++..| .+.|||.|--|. |. +++...++ ++...+.
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG-YDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG-YDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc-ceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 47999999999974 355532 134566666555 578999998883 43 44444433 3333222
Q ss_pred CCCCCCCceEEeeec
Q 020679 76 GLIKSRNELFITSKL 90 (323)
Q Consensus 76 g~~~~R~~~~i~tK~ 90 (323)
. .+-.|.++.-+
T Consensus 144 A---~~aqV~lAvEi 155 (287)
T COG3623 144 A---ARAQVMLAVEI 155 (287)
T ss_pred H---HhhccEEEeee
Confidence 1 45666666554
No 47
>PLN02444 HMP-P synthase
Probab=67.06 E-value=1.4e+02 Score=29.81 Aligned_cols=136 Identities=11% Similarity=0.083 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHcCCCE-EecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeee--------c--CCCCCChhhHHHH
Q 020679 35 TEVVKESVVHAIEVGYRH-FDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSK--------L--WLGHAHRQLVLPA 103 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~-~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK--------~--~~~~~~~~~i~~~ 103 (323)
.+.-.+=+..|.+.|-.. .|-+. .|.-..+-+++-+. ..+=|.|- + ...+.+.+.+.+.
T Consensus 236 ie~EveK~~~A~~~GADTvMDLST-Ggdi~~iR~~Il~~---------spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ 305 (642)
T PLN02444 236 IEEEVYKLQWATMWGADTVMDLST-GRHIHETREWILRN---------SPVPVGTVPIYQALEKVDGIAENLTWEVFRET 305 (642)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc---------CCCCccCccHHHHHHHhcCChhhCCHHHHHHH
Confidence 444455578888888764 45553 34433333333211 11222221 1 1125567777777
Q ss_pred HHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCC
Q 020679 104 LQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 183 (323)
Q Consensus 104 le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~ 183 (323)
+++..+ +-+|.+-+|.- -..+.++.++ + |..|+-+-...-+..++....
T Consensus 306 ieeQae----qGVDfmTIH~G----------------------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~- 354 (642)
T PLN02444 306 LIEQAE----QGVDYFTIHAG----------------------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH- 354 (642)
T ss_pred HHHHHH----hCCCEEEEChh----------------------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC-
Confidence 777766 45677889963 2344555554 3 566766555445555443221
Q ss_pred CceeecccCChhhhh-HHHHHHHHHhCceEEEeccC
Q 020679 184 PPAVNQVELNPVWQQ-KKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 184 ~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~~l 218 (323)
.=|++..+ +++++.|++++|.+----.|
T Consensus 355 -------kENPlYe~FD~ileI~k~YDVtlSLGDGL 383 (642)
T PLN02444 355 -------KENFAYEHWDDILDICNQYDIALSIGDGL 383 (642)
T ss_pred -------CcCchHHHHHHHHHHHHHhCeeeeccCCc
Confidence 23455544 78999999999988543333
No 48
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=66.09 E-value=44 Score=28.99 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEeccCCC
Q 020679 149 WEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 149 ~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
++.+.+|.+...+. ..+=|.++...+.++++....+ ++|+..+.. .+-.++.++|+++|+.++..+.+..
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d--~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGAVD--ILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCC--EEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 56677778777665 4455566777777777765544 777665543 2236889999999999999877654
No 49
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=64.77 E-value=1.2e+02 Score=28.12 Aligned_cols=96 Identities=24% Similarity=0.213 Sum_probs=59.6
Q ss_pred HHHHHcCCCcccEEEeeC-CCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccE-EEcCCC---CHHHHHHHHHh
Q 020679 106 TSLKNLGLEYIDLYLIHF-PGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKS-IGVSNF---ACKKLERLLAT 180 (323)
Q Consensus 106 ~SL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~-iGvs~~---~~~~l~~~~~~ 180 (323)
+.-+.+|.|+||+-+.-. |+.. ....++....++...+.=.+-- |..|.. +++.++.+++.
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~--------------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~ 148 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGK--------------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEA 148 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccc--------------cchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 344578998888854322 2110 0124445555555544433333 666643 68899999988
Q ss_pred CCC-CceeecccCChhhhhHHHHHHHHHhCceEEEeccC
Q 020679 181 AKI-PPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 181 ~~~-~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l 218 (323)
+.. .+.++-+.. .+-+.+.+.|+++|..+++.++.
T Consensus 149 ~~g~~pLInSat~---en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 149 AEGERCLLGSAEE---DNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred hCCCCCEEEECCH---HHHHHHHHHHHHhCCeEEEEcHH
Confidence 763 365664442 12368999999999999998865
No 50
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=63.15 E-value=40 Score=34.50 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=73.8
Q ss_pred HHHHHHcCCccEEEcCCCCHHHHHHHHHhCC--CC-c-eeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCC
Q 020679 152 MEECQNLGLTKSIGVSNFACKKLERLLATAK--IP-P-AVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGT 227 (323)
Q Consensus 152 L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~--~~-~-~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~ 227 (323)
++.+....++..+-=++.+.+.+..+++... ++ . ..+.+.+....|+..+.++|.+.++-++.-+.-.+
T Consensus 147 ~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~Ss------- 219 (647)
T PRK00087 147 AEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSS------- 219 (647)
T ss_pred HhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCc-------
Confidence 3334334566666666677666665544321 11 1 12333333345567889999998888887444332
Q ss_pred CCccChHHHHHHHHHcCC------CHHHHHHHHHHhCC-cEEEeCCCCHHHHHHh
Q 020679 228 NRVMECQVLKEIANARGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKEN 275 (323)
Q Consensus 228 ~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~i~g~~~~~~l~en 275 (323)
...+|.++|++.+. ++.++.-.|.-... +.+..|+|+|+.+-+.
T Consensus 220 ----Nt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 220 ----NTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred ----cHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 45789999998873 78899889987766 7788999999866443
No 51
>PRK07094 biotin synthase; Provisional
Probab=60.94 E-value=75 Score=29.15 Aligned_cols=122 Identities=14% Similarity=0.162 Sum_probs=69.7
Q ss_pred CcHHHHHHHHHHHHHcCCccEEEcCC-----CCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEecc
Q 020679 143 LDYEAVWEAMEECQNLGLTKSIGVSN-----FACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 143 ~~~~~~~~~L~~l~~~G~Ir~iGvs~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~ 217 (323)
.+.+++.+.++.+++.| ++.+.++. +..+.+.++++...-.+. +.+.+++.....+.+...++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 35788999999988876 56665542 244556665543221011 111233323346788888998988776433
Q ss_pred CCCCCCCCCCCCccChHHHHHHHHHcCCCHHHH--HHHHHHhCC----cEEEeCC--CCHHHHHHhhccc
Q 020679 218 LGAKGTRWGTNRVMECQVLKEIANARGKSVAQV--SLRWVYQQG----VSLVVKS--FNKERMKENLDIF 279 (323)
Q Consensus 218 l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~--al~~~l~~~----~~~i~g~--~~~~~l~enl~a~ 279 (323)
=+. ..+.+..+.+ +.+..+. +++++...| ...++|. .+.+++.+.+..+
T Consensus 148 Es~-----------~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l 204 (323)
T PRK07094 148 ETA-----------DKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFL 204 (323)
T ss_pred ccC-----------CHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHH
Confidence 322 2334444433 3344333 577777776 4567784 6778877766543
No 52
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=60.40 E-value=1.2e+02 Score=26.82 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHHH--HHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQPL--GEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLG 112 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~v--G~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg 112 (323)
.++..+.++.+.+.|++.|-.--.-..++.+ =+++++. -.+++.|.-.... ..+.+...+ +-+.|+.+
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-------~g~~~~l~vDan~-~~~~~~a~~-~~~~l~~~- 155 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-------VGDDAELRVDANR-GWTPKQAIR-ALRALEDL- 155 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCC-CcCHHHHHH-HHHHHHhc-
Confidence 4666677777888999988653211122222 1233432 1234445444422 222222222 22333333
Q ss_pred CCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeeccc
Q 020679 113 LEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVE 191 (323)
Q Consensus 113 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~ 191 (323)
++.++..|... +-++.+.++++.-.+. ..|=+-++...+.++++....+ ++|+.
T Consensus 156 ----~i~~iEeP~~~-------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d--~v~~k 210 (265)
T cd03315 156 ----GLDYVEQPLPA-------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAAD--AVNIK 210 (265)
T ss_pred ----CCCEEECCCCc-------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCC--EEEEe
Confidence 45556766321 2346677777776665 4455667788888888766655 66666
Q ss_pred CChh---hhhHHHHHHHHHhCceEEEeccCCC
Q 020679 192 LNPV---WQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 192 ~~~~---~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
.... .+-..+...|+++|+.++..+.+.+
T Consensus 211 ~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 211 TAKTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred cccccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 5443 2236889999999999998766644
No 53
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=57.70 E-value=1.7e+02 Score=27.48 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLE 114 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d 114 (323)
.++..+.+..+.+.|++.|=.-- .+.| +++++. -.+++.|..-.. ...+.+. ..+-++.| +
T Consensus 127 ~~~~~~~a~~~~~~Gf~~~KiKv----~~~v-~avre~-------~G~~~~l~vDaN-~~w~~~~----A~~~~~~l--~ 187 (361)
T cd03322 127 IPELLEAVERHLAQGYRAIRVQL----PKLF-EAVREK-------FGFEFHLLHDVH-HRLTPNQ----AARFGKDV--E 187 (361)
T ss_pred HHHHHHHHHHHHHcCCCeEeeCH----HHHH-HHHHhc-------cCCCceEEEECC-CCCCHHH----HHHHHHHh--h
Confidence 45566666777788998774210 1222 233322 123444444332 1223332 22233334 2
Q ss_pred cccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeecccCC
Q 020679 115 YIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELN 193 (323)
Q Consensus 115 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~ 193 (323)
.+++.++-.|.. .+-++.+.+|++...+. ..|=|-++...+..+++...++ ++|....
T Consensus 188 ~~~l~~iEeP~~-------------------~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~d--i~~~d~~ 246 (361)
T cd03322 188 PYRLFWMEDPTP-------------------AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLID--YIRTTVS 246 (361)
T ss_pred hcCCCEEECCCC-------------------cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCC--EEecCcc
Confidence 346777877742 23467788888887775 7778888899999998876544 7777665
Q ss_pred hh---hhhHHHHHHHHHhCceEEEeccC
Q 020679 194 PV---WQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 194 ~~---~~~~~ll~~~~~~gi~via~~~l 218 (323)
.. .+-.++.+.|+++|+.++.++..
T Consensus 247 ~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 247 HAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred ccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 42 33478999999999999987554
No 54
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=57.51 E-value=2.1e+02 Score=28.59 Aligned_cols=136 Identities=12% Similarity=0.089 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHcCCCEE-ecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeee--------cC--CCCCChhhHHHH
Q 020679 35 TEVVKESVVHAIEVGYRHF-DTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSK--------LW--LGHAHRQLVLPA 103 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~-DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK--------~~--~~~~~~~~i~~~ 103 (323)
.++-.+=+..|.+.|-..+ |-+. .|+-..+-+++-+. ..+=|.|- +. ..+.+.+.+.+.
T Consensus 231 ieeEveK~~~A~~~GADtvMDLST-Ggdi~~~R~~Il~~---------spvPvGTVPiYqA~~~~~~~~~~lt~e~~~d~ 300 (607)
T PRK09284 231 IEEEVEKMVWATRWGADTVMDLST-GKNIHETREWILRN---------SPVPIGTVPIYQALEKVNGVAEDLTWEIFRDT 300 (607)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCC-CCCHHHHHHHHHHc---------CCCCccCccHHHHHHHhcCChhhCCHHHHHHH
Confidence 4444555688888887644 5553 23333333333210 11222221 11 125566777777
Q ss_pred HHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCC
Q 020679 104 LQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 183 (323)
Q Consensus 104 le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~ 183 (323)
+++..+ +=+|.+-+|.- -..+.++.++ + |..|+-+-...-+..++....
T Consensus 301 ieeQAe----qGVDf~TIHaG----------------------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~- 349 (607)
T PRK09284 301 LIEQAE----QGVDYFTIHAG----------------------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH- 349 (607)
T ss_pred HHHHHH----hCCCEEEEChh----------------------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC-
Confidence 777766 45677889963 2344555554 3 667776665555555543321
Q ss_pred CceeecccCChhhhh-HHHHHHHHHhCceEEEeccC
Q 020679 184 PPAVNQVELNPVWQQ-KKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 184 ~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~~l 218 (323)
.=|++... +++++.|++++|.+----.|
T Consensus 350 -------kENplYe~FD~ileI~k~YDVtlSLGDGL 378 (607)
T PRK09284 350 -------KENFLYTHFEEICEIMAAYDVSFSLGDGL 378 (607)
T ss_pred -------CcCcHHHHHHHHHHHHHHhCeeeeccCCc
Confidence 23444444 78999999999988543333
No 55
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=56.66 E-value=1.5e+02 Score=26.52 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=62.7
Q ss_pred ChhhHHHHHHHHHHHcCCCcccEEEe-eCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHH
Q 020679 96 HRQLVLPALQTSLKNLGLEYIDLYLI-HFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKL 174 (323)
Q Consensus 96 ~~~~i~~~le~SL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l 174 (323)
+.+.+.+..++.+ .-|.|.||+-.- -+|....-. . ....+.+...+..+++.-.+. +.+-++.++.+
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~--------~--~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~ 89 (257)
T cd00739 22 SLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVS--------V--EEELERVIPVLEALRGELDVL-ISVDTFRAEVA 89 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCC--------H--HHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHH
Confidence 3455555554444 468899998532 223211000 0 011233444456666663443 88999999999
Q ss_pred HHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEecc
Q 020679 175 ERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 175 ~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~ 217 (323)
+++++.+ ...+|-+. ....+.++++.++++|+.++.+..
T Consensus 90 e~al~~G--~~iINdis--g~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 90 RAALEAG--ADIINDVS--GGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHhC--CCEEEeCC--CCCCChHHHHHHHHcCCCEEEECC
Confidence 9999875 23455333 222226899999999999999544
No 56
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=56.09 E-value=1.1e+02 Score=27.31 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=66.9
Q ss_pred CChhhHHHHHHHHHHHcCCCcccEEEe-eCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHH
Q 020679 95 AHRQLVLPALQTSLKNLGLEYIDLYLI-HFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKK 173 (323)
Q Consensus 95 ~~~~~i~~~le~SL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~ 173 (323)
.+.+.+.+..++.+ .-|.|.||+=.- -+|.. .+ ... ....+.+...++.+++.-.+ -|.+-+++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~-~~-----~~~----~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v 88 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGA-EP-----VSV----EEELERVIPVLRALAGEPDV-PISVDTFNAEV 88 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCC-Cc-----CCH----HHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHH
Confidence 34566666665554 478999998522 22321 00 000 01134456667777766333 48999999999
Q ss_pred HHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccC
Q 020679 174 LERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 174 l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l 218 (323)
++.+++.+ .+.+|-+. ....+.++++.++++|..++.+..-
T Consensus 89 ~~aaL~~g--~~iINdis--~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 89 AEAALKAG--ADIINDVS--GGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHHHhC--CCEEEeCC--CCCCChHHHHHHHHcCCCEEEECcC
Confidence 99999986 34455433 2222268899999999999987644
No 57
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=55.73 E-value=1.5e+02 Score=26.37 Aligned_cols=105 Identities=13% Similarity=0.050 Sum_probs=63.6
Q ss_pred CChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHH
Q 020679 95 AHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKL 174 (323)
Q Consensus 95 ~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l 174 (323)
.+++.+.+..++.++ -|.|+||+=. .|... ...++.-+.+..+++.-. .-|.+-+++++.+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~---------------~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~ 83 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGL---------------DGVSAMKWLLNLLATEPT-VPLMLDSTNWEVI 83 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCC---------------CHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHH
Confidence 345667777777665 5999999854 12110 012333333333333212 2488888999999
Q ss_pred HHHHHhCCCCceeecccCChh-hhhHHHHHHHHHhCceEEEeccC
Q 020679 175 ERLLATAKIPPAVNQVELNPV-WQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 175 ~~~~~~~~~~~~~~q~~~~~~-~~~~~ll~~~~~~gi~via~~~l 218 (323)
+.+++.+.....+|-+..... .+...+++.++++|..++.+..-
T Consensus 84 e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 84 EAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 999987433445564443221 12367889999999999987653
No 58
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=55.45 E-value=6.1 Score=37.00 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.1
Q ss_pred cCCccEEEcCCCCHHHHHHHHHhCC
Q 020679 158 LGLTKSIGVSNFACKKLERLLATAK 182 (323)
Q Consensus 158 ~G~Ir~iGvs~~~~~~l~~~~~~~~ 182 (323)
-|+||++||--++++.+.++.....
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~ 287 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN 287 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc
Confidence 4999999999999999988766543
No 59
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=55.07 E-value=56 Score=30.16 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEeccCCC
Q 020679 147 AVWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 147 ~~~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
+-++.+.++++.-.+. ..|=|.++...+..+++....+ ++|...... .+-..+...|+++|+.++..+.+.+
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--vi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVK--VINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCC--EEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 4567788888876664 6677888899999988876554 677665442 2336889999999999998765544
No 60
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=54.84 E-value=1.1e+02 Score=26.77 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcC-CccEEEcCCCCHHHH
Q 020679 96 HRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLG-LTKSIGVSNFACKKL 174 (323)
Q Consensus 96 ~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~Ir~iGvs~~~~~~l 174 (323)
+.+... .+-+.|..+|+++|.+-.--.+... | ...+.++.++.+++.+ .++...++......+
T Consensus 17 s~e~~~-~i~~~L~~~GV~~IEvg~~~~~~~~-p--------------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i 80 (265)
T cd03174 17 STEDKL-EIAEALDEAGVDSIEVGSGASPKAV-P--------------QMEDDWEVLRAIRKLVPNVKLQALVRNREKGI 80 (265)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEeccCcCcccc-c--------------cCCCHHHHHHHHHhccCCcEEEEEccCchhhH
Confidence 334333 4445577899988888655433211 1 1245678888888888 577667776556667
Q ss_pred HHHHHhCCCCceeecccCChh----------------hhhHHHHHHHHHhCceEEEec
Q 020679 175 ERLLATAKIPPAVNQVELNPV----------------WQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 175 ~~~~~~~~~~~~~~q~~~~~~----------------~~~~~ll~~~~~~gi~via~~ 216 (323)
+.+.+.+ .+ .+++.+... ..-.+.+.+++++|+.+...-
T Consensus 81 ~~a~~~g-~~--~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 81 ERALEAG-VD--EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred HHHHhCC-cC--EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7766654 33 343333222 111467888999998877654
No 61
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=54.56 E-value=2.2e+02 Score=27.84 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=64.4
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCC----cccEEEeeCCCCCCCCC
Q 020679 56 AAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLE----YIDLYLIHFPGSLKPGT 131 (323)
Q Consensus 56 A~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d----~iDl~~lH~p~~~~~~~ 131 (323)
.-.||.|+.+-++|++..+... +.+-++|.|-+... .-.+.+..-+++.-+++.-+ .+.++.+|.|+.....
T Consensus 68 dvVfGG~~kL~~aI~~~~~~~~--~p~~I~V~ttC~~e-iIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~- 143 (457)
T TIGR02932 68 SAVFGGAKRIEEGVLTLARRYP--NLRVIPIITTCSTE-TIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQ- 143 (457)
T ss_pred ceEECcHHHHHHHHHHHHHhCC--CCCEEEEECCchHH-hhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcH-
Confidence 3467888899999988654320 13446777765321 11233444444433333222 4678899988764320
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHH------HcCCccEEEcCCC--CHHHHHHHHHhCCCCcee
Q 020679 132 GFPFNKEDIVPLDYEAVWEAMEECQ------NLGLTKSIGVSNF--ACKKLERLLATAKIPPAV 187 (323)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~L~~l~------~~G~Ir~iGvs~~--~~~~l~~~~~~~~~~~~~ 187 (323)
....+.+++++-+.. .+++|.-||-.+. +.+.++++++..++.+.+
T Consensus 144 ----------~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 144 ----------VTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred ----------HHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 112344444444322 2467888875432 345778888877766443
No 62
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=53.00 E-value=63 Score=30.31 Aligned_cols=67 Identities=10% Similarity=0.050 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEec
Q 020679 148 VWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 148 ~~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~ 216 (323)
-++.+.+|+++..|. +.|=+-++..++..+++...++ ++|...... ..-.++..+|+++|+.++..+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d--~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~ 297 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAAD--VFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGT 297 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCC--eEEEeecccCCHHHHHHHHHHHHHcCCceeecC
Confidence 345555666554443 4455555666666666554433 444433221 222566666777777666543
No 63
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=51.28 E-value=1.7e+02 Score=29.01 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCC
Q 020679 59 YQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKE 138 (323)
Q Consensus 59 YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 138 (323)
+|+++.|-+++++..+.- +.+-++|.|-+- ++-|-..++...+.++.+.+.++.++.|......
T Consensus 67 ~G~~~~L~~aI~~~~~~~---~P~~I~V~sTC~-----selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~-------- 130 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF---KPDLIVVTPSCT-----SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKE-------- 130 (511)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEEeCCCh-----HHHhccCHHHHHHHhccCCCcEEEecCCCcccch--------
Confidence 678888888888765432 344566666542 2334444555566666556889999988653320
Q ss_pred CCCCCcHHHHHHHHHH-H----------HHcCCccEEEcCCC------CHHHHHHHHHhCCCCc
Q 020679 139 DIVPLDYEAVWEAMEE-C----------QNLGLTKSIGVSNF------ACKKLERLLATAKIPP 185 (323)
Q Consensus 139 ~~~~~~~~~~~~~L~~-l----------~~~G~Ir~iGvs~~------~~~~l~~~~~~~~~~~ 185 (323)
....+.+++++-+ + .+.++|.-||.++. +...++++++..++.+
T Consensus 131 ---~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 131 ---NQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred ---hHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 0112223332222 1 23467889998763 3466778888776654
No 64
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=50.29 E-value=48 Score=32.42 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCEE--ecCCCc----------CCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCC-CChhhHH-----
Q 020679 40 ESVVHAIEVGYRHF--DTAAIY----------QSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGH-AHRQLVL----- 101 (323)
Q Consensus 40 ~~l~~A~~~Gin~~--DTA~~Y----------gsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~-~~~~~i~----- 101 (323)
+.++...+.|+..+ =||..| |..+.+..+-++.+... -+.++||++=++.-. ..|....
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~---L~G~~~lTaGLGGMgGAQPlA~~mag~v 183 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS---LKGKWVLTAGLGGMGGAQPLAVTMNGGV 183 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC---CceeEEEEeCCCccccccHHHHHHcCce
Confidence 34556677888765 244443 24666677777766322 477788888875321 1111110
Q ss_pred -----HHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHH
Q 020679 102 -----PALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLER 176 (323)
Q Consensus 102 -----~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~ 176 (323)
-.-.+.-+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-.+.+++
T Consensus 184 ~i~vEvd~~ri~kR~~~gyld~~~----------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~ 241 (545)
T TIGR01228 184 SIAVEVDESRIDKRLETKYCDEQT----------------------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPE 241 (545)
T ss_pred EEEEEECHHHHHHHHhcCcceeEc----------------------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHH
Confidence 1134566889999988732 1388999999999999999999999988899999
Q ss_pred HHHhCCCCc--eeecccC
Q 020679 177 LLATAKIPP--AVNQVEL 192 (323)
Q Consensus 177 ~~~~~~~~~--~~~q~~~ 192 (323)
+++.. +.| ..-|+..
T Consensus 242 l~~r~-i~pDlvtDQTSa 258 (545)
T TIGR01228 242 LLKRG-VVPDVVTDQTSA 258 (545)
T ss_pred HHHcC-CCCCCcCCCCcc
Confidence 98864 333 3347654
No 65
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=50.17 E-value=1e+02 Score=29.38 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEeccC
Q 020679 148 VWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 148 ~~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~l 218 (323)
-++.+.+|++.-.+. ..|=|-++...++++++...++ ++|....-. .+-..+.++|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~d--ii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLID--YIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCC--EEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 467788888886665 6677778899999998876554 777665542 33478999999999999987554
No 66
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=50.16 E-value=2.1e+02 Score=26.31 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=69.3
Q ss_pred HHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCc-cEEEcCCC---CHHHHHHHHH
Q 020679 104 LQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLT-KSIGVSNF---ACKKLERLLA 179 (323)
Q Consensus 104 le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~I-r~iGvs~~---~~~~l~~~~~ 179 (323)
.....++.|. |++.+|-...... +.+....++.+.|+++.+.=+| -.||-|.. ++..++++.+
T Consensus 156 Ark~Vk~fga---dmvTiHlIsTdPk----------i~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAE 222 (403)
T COG2069 156 ARKCVKKFGA---DMVTIHLISTDPK----------IKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAE 222 (403)
T ss_pred HHHHHHHhCC---ceEEEEeecCCcc----------ccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHH
Confidence 3455677775 7777886533211 1234588999999998888777 45677775 4677888877
Q ss_pred hCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 180 TAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 180 ~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
.+...- +.-...|+-..-+.+.+.|.++|=.+++|.++.-
T Consensus 223 vaEGeR-clLaSanldlDy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 223 VAEGER-CLLASANLDLDYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred hhcCce-EEeeccccccCHHHHHHHHHhcCceEEEeeccCh
Confidence 765432 2222333322337889999999999999999854
No 67
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=49.98 E-value=73 Score=29.61 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEe
Q 020679 148 VWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAY 215 (323)
Q Consensus 148 ~~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~ 215 (323)
-++.+.+|++...|. +.|=|.++...+.++++....+ ++|...... .+-.++...|+++|+.++.+
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d--~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVD--ILQPDVNWVGGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCC--EEecCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 456777788777665 6666777888888888765544 777665443 23367888999999987764
No 68
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=49.52 E-value=2.5e+02 Score=27.08 Aligned_cols=116 Identities=9% Similarity=0.104 Sum_probs=61.3
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCC-CcccEEEeeCCCCCCCCCCCC
Q 020679 56 AAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGL-EYIDLYLIHFPGSLKPGTGFP 134 (323)
Q Consensus 56 A~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~-d~iDl~~lH~p~~~~~~~~~~ 134 (323)
.-.||.++.|-+++++..+.. +.+-++|.|-+-+. .-.+.+..-+++.-++... ..+.++.++.|......
T Consensus 64 d~V~Gg~~~L~~ai~~~~~~~---~p~~I~v~ttC~~~-iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~---- 135 (435)
T cd01974 64 AAVFGGQNNLIDGLKNAYAVY---KPDMIAVSTTCMAE-VIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSH---- 135 (435)
T ss_pred ceEECcHHHHHHHHHHHHHhc---CCCEEEEeCCchHh-hhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCH----
Confidence 346788888889988865432 44556777765321 1123333333333233211 14688889887543210
Q ss_pred CCCCCCCCCcHHHHHHHHHH-HH-------HcCCccEEEcCC--CC-HHHHHHHHHhCCCCce
Q 020679 135 FNKEDIVPLDYEAVWEAMEE-CQ-------NLGLTKSIGVSN--FA-CKKLERLLATAKIPPA 186 (323)
Q Consensus 135 ~~~~~~~~~~~~~~~~~L~~-l~-------~~G~Ir~iGvs~--~~-~~~l~~~~~~~~~~~~ 186 (323)
....+.++++|-+ +. +.++|.-||-.+ .+ .+.+.++++..++.+.
T Consensus 136 -------~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 136 -------ITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred -------HHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 0123334444432 22 234566675222 22 5678888888776653
No 69
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=49.50 E-value=1.7e+02 Score=25.59 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=40.8
Q ss_pred CCEEec-CCCcC--CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCC-CC------ChhhHHHHHHHHHHHcCCCcccEE
Q 020679 50 YRHFDT-AAIYQ--SEQPLGEAIAEALRLGLIKSRNELFITSKLWLG-HA------HRQLVLPALQTSLKNLGLEYIDLY 119 (323)
Q Consensus 50 in~~DT-A~~Yg--sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~-~~------~~~~i~~~le~SL~~Lg~d~iDl~ 119 (323)
.|.+.. +..|. +.+.+.+|.++ .++++..+-|++.. .+ ..+.+.+.+-+.++-|| +++..+
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~--------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~i 89 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ--------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPI 89 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT--------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh--------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEE
Confidence 455544 33576 78888888764 46889999998531 11 23455466666999999 999999
Q ss_pred EeeCCCC
Q 020679 120 LIHFPGS 126 (323)
Q Consensus 120 ~lH~p~~ 126 (323)
++..|-.
T Consensus 90 L~Q~Pps 96 (230)
T PF01904_consen 90 LFQFPPS 96 (230)
T ss_dssp EEE--TT
T ss_pred EEEcCCC
Confidence 9998853
No 70
>PRK05414 urocanate hydratase; Provisional
Probab=49.46 E-value=52 Score=32.33 Aligned_cols=126 Identities=21% Similarity=0.172 Sum_probs=83.5
Q ss_pred HHHHHHHcCCCEE--ecCCCc----------CCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCC-CChhhHH------
Q 020679 41 SVVHAIEVGYRHF--DTAAIY----------QSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGH-AHRQLVL------ 101 (323)
Q Consensus 41 ~l~~A~~~Gin~~--DTA~~Y----------gsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~-~~~~~i~------ 101 (323)
.++...+.|+..+ =||..| |..+.+..+-++.+. |- -+.++||++=++.-. ..|....
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~--L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD--LAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC--CceeEEEEecCCccccccHHHHHhcCceE
Confidence 4556677787765 244444 246666777777654 32 467788888875421 1111110
Q ss_pred ----HHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHH
Q 020679 102 ----PALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERL 177 (323)
Q Consensus 102 ----~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~ 177 (323)
-.-.+.-+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-.+.++++
T Consensus 194 i~vEvd~~ri~kR~~~gyld~~~----------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l 251 (556)
T PRK05414 194 LAVEVDESRIDKRLRTGYLDEKA----------------------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPEL 251 (556)
T ss_pred EEEEECHHHHHHHHhCCcceeEc----------------------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHH
Confidence 1134566889999988732 13889999999999999999999999888889998
Q ss_pred HHhCCCCc--eeecccC
Q 020679 178 LATAKIPP--AVNQVEL 192 (323)
Q Consensus 178 ~~~~~~~~--~~~q~~~ 192 (323)
++.. +.| ..-|+..
T Consensus 252 ~~~~-i~pDlvtDQTSa 267 (556)
T PRK05414 252 VRRG-IRPDLVTDQTSA 267 (556)
T ss_pred HHcC-CCCCccCcCccc
Confidence 8864 333 3346654
No 71
>PRK14017 galactonate dehydratase; Provisional
Probab=49.13 E-value=1.1e+02 Score=29.03 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEeccC
Q 020679 149 WEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 149 ~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~l 218 (323)
++.+.+|++...+. ..|=|.++...+..+++...++ ++|...... .+-..+.+.|+++|+.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d--~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVD--IIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCC--eEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 57788888887765 6677778899999998876544 777665543 33478999999999999987553
No 72
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=48.93 E-value=33 Score=32.66 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHcCCCEE-ecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeec---------C-CCCCChhhHHHH
Q 020679 35 TEVVKESVVHAIEVGYRHF-DTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKL---------W-LGHAHRQLVLPA 103 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~-DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~---------~-~~~~~~~~i~~~ 103 (323)
.+.-.+-+..|.+.|-..+ |-+. -|.-..+-+.+-+ ...+=|.|-- + ..+.+++.+.+.
T Consensus 75 ~~~E~~K~~~A~~~GADtvMDLSt-ggdl~~iR~~il~---------~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ 144 (420)
T PF01964_consen 75 IEEELEKLKIAEKAGADTVMDLST-GGDLDEIRRAILE---------NSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDV 144 (420)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE----STTHHHHHHHHHH---------T-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCC-CCCHHHHHHHHHH---------hCCCccccchHHHHHHHhCCChhhCCHHHHHHH
Confidence 4555566789999998754 6553 2333333333321 2233343321 1 235677888888
Q ss_pred HHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCC
Q 020679 104 LQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 183 (323)
Q Consensus 104 le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~ 183 (323)
+|+..+ +=+|++-+|.-. ..+.++.++++|++-.| -+-...-+..++....
T Consensus 145 ie~qa~----~GVDfmtiH~gi----------------------t~~~~~~~~~~~R~~gi--VSRGGs~l~~WM~~n~- 195 (420)
T PF01964_consen 145 IEKQAK----DGVDFMTIHCGI----------------------TRETLERLKKSGRIMGI--VSRGGSILAAWMLHNG- 195 (420)
T ss_dssp HHHHHH----HT--EEEE-TT------------------------GGGGGGGT--TSSS------HHHHHHHHHHHHHT-
T ss_pred HHHHHH----cCCCEEEEccch----------------------hHHHHHHHhhhccccCc--cccchHHHHHHHHhcC-
Confidence 888877 567889999742 34677888888876544 3322233333332211
Q ss_pred CceeecccCChhhhh-HHHHHHHHHhCceEEEeccCCCCCCC
Q 020679 184 PPAVNQVELNPVWQQ-KKLRVFCEKKGIHITAYSPLGAKGTR 224 (323)
Q Consensus 184 ~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~~l~~~G~l 224 (323)
.=||+... +++++.|++++|.+---..|.. |-+
T Consensus 196 -------~ENPly~~fD~lLeI~k~yDVtLSLGDglRP-G~i 229 (420)
T PF01964_consen 196 -------KENPLYEHFDRLLEIAKEYDVTLSLGDGLRP-GCI 229 (420)
T ss_dssp -------S--HHHHTHHHHHHHHTTTT-EEEE--TT---SSG
T ss_pred -------CcCcHHHhHHHHHHHHHHhCeeEecccccCC-CCc
Confidence 23555554 7899999999999876555544 443
No 73
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=48.32 E-value=2.5e+02 Score=26.72 Aligned_cols=139 Identities=13% Similarity=0.161 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHcCCC-EEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeee--------cC--CCCCChhhHHHH
Q 020679 35 TEVVKESVVHAIEVGYR-HFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSK--------LW--LGHAHRQLVLPA 103 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin-~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK--------~~--~~~~~~~~i~~~ 103 (323)
-+.-.+-+..|.+.|.. ..|-+. .|.-.-+.+++-+. .++=|.|- +. ..+.+.+.+...
T Consensus 77 i~~EveK~~~A~~~GADtvMDLSt-Ggdl~eiR~~ii~~---------s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~ 146 (432)
T COG0422 77 IDEEVEKAVWAIKWGADTVMDLST-GGDLHEIREWIIRN---------SPVPVGTVPIYQALEEVNGKVEDLTEDDFFDT 146 (432)
T ss_pred HHHHHHHHHHHHHhCcceeEeccc-CCCHHHHHHHHHhc---------CCCCcCCchHHHHHHHHhcchhhCCHHHHHHH
Confidence 45555666889999965 556664 35443334443211 11112221 11 235667777777
Q ss_pred HHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCC
Q 020679 104 LQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 183 (323)
Q Consensus 104 le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~ 183 (323)
+++..+ +-+|.+.+|.- -.++.++.+++.|++ .|+-+-...-+..++-...
T Consensus 147 v~~qa~----~GVdfmTIHaG----------------------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~~- 197 (432)
T COG0422 147 VEKQAE----QGVDFMTIHAG----------------------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHNH- 197 (432)
T ss_pred HHHHHH----hCCcEEEeehh----------------------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHHcC-
Confidence 777776 45677899952 356889999999985 4554444444444433211
Q ss_pred CceeecccCChhhhh-HHHHHHHHHhCceEEEeccCC
Q 020679 184 PPAVNQVELNPVWQQ-KKLRVFCEKKGIHITAYSPLG 219 (323)
Q Consensus 184 ~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~~l~ 219 (323)
.=|++... ..+++.|++++|.+---..|.
T Consensus 198 -------~ENply~~fd~lleI~k~yDvtlSLGDglR 227 (432)
T COG0422 198 -------KENPLYEHFDELLEIFKEYDVTLSLGDGLR 227 (432)
T ss_pred -------CcCchhhhHHHHHHHHHHhCeeeeccCCCC
Confidence 23444444 789999999999886444443
No 74
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=48.26 E-value=2.7e+02 Score=27.06 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=62.7
Q ss_pred ChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCC--CCCCC--CCCCCCCcHHHHHHHHHHHHH-----cCCccEEEc
Q 020679 96 HRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGT--GFPFN--KEDIVPLDYEAVWEAMEECQN-----LGLTKSIGV 166 (323)
Q Consensus 96 ~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~--~~~~~--~~~~~~~~~~~~~~~L~~l~~-----~G~Ir~iGv 166 (323)
.++.+.....+.++.-..+.--.+++|-|.....=. ++... .........+.+.+.++...+ .+.|+.|=+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~ 120 (449)
T PRK09058 41 PAEQLAATWQRLTQQTLRARKRLLYIHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYF 120 (449)
T ss_pred ChHHHHHHHHHHHhhcCCCCceEEEEEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEE
Confidence 345666666666643222333468999886432210 11100 000000123344555554443 245665533
Q ss_pred --CC---CCHHHHHHHHHhCC----CCce-eecccCChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 167 --SN---FACKKLERLLATAK----IPPA-VNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 167 --s~---~~~~~l~~~~~~~~----~~~~-~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
.+ .+++++.++++... +... -+-++.++..-..+.++.+++.|+.-+..+.-..
T Consensus 121 GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf 184 (449)
T PRK09058 121 GGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSF 184 (449)
T ss_pred CCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcC
Confidence 22 34677777765432 2111 1223444433357889999999998887666543
No 75
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=48.16 E-value=1.5e+02 Score=26.62 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=57.2
Q ss_pred CcccccccccCCCCChH-HHHHHHHHHHHcCCCEEecCCCcC----CHHHHHHHHHHHHHc-CCCCCCCceEEeeecCCC
Q 020679 20 PLVGFGTAQFPFGAATE-VVKESVVHAIEVGYRHFDTAAIYQ----SEQPLGEAIAEALRL-GLIKSRNELFITSKLWLG 93 (323)
Q Consensus 20 s~lglG~~~~~~~~~~~-~~~~~l~~A~~~Gin~~DTA~~Yg----sE~~vG~~l~~~~~~-g~~~~R~~~~i~tK~~~~ 93 (323)
-++.+=+..+ + .+ +...+.+.|.++|..|+=|+..|+ +.+.+ +.+++.+++ + ..++ +.-|....
T Consensus 134 lKVIlEt~~L---~-~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv-~lm~~~i~~~~---~~~~--vgIKAsGG 203 (257)
T PRK05283 134 LKVIIETGEL---K-DEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAA-RIMLEVIRDMG---VAKT--VGFKPAGG 203 (257)
T ss_pred EEEEEecccc---C-CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHHHhcc---cCCC--eeEEccCC
Confidence 4455555444 2 45 478889999999999999999996 23332 223332110 1 1122 55566444
Q ss_pred CCChhhHHHHHHHHHHHcCCCccc
Q 020679 94 HAHRQLVLPALQTSLKNLGLEYID 117 (323)
Q Consensus 94 ~~~~~~i~~~le~SL~~Lg~d~iD 117 (323)
-.+.+...+-++.--+.||.++++
T Consensus 204 Irt~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 204 VRTAEDAAQYLALADEILGADWAD 227 (257)
T ss_pred CCCHHHHHHHHHHHHHHhChhhcC
Confidence 456688999999999999998866
No 76
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=45.14 E-value=1.3e+02 Score=28.71 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEeccC
Q 020679 148 VWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 148 ~~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~l 218 (323)
-++.+.+|++...+. +.|-|.++..++.++++....+ ++|...... ..-.++.+.|+++|+.+..++..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avd--il~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVD--IPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCc--EEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 457777788877665 6676777888888888866544 666665432 23468899999999999887764
No 77
>PRK10799 metal-binding protein; Provisional
Probab=44.94 E-value=27 Score=30.96 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=20.6
Q ss_pred HHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHH
Q 020679 42 VVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALR 74 (323)
Q Consensus 42 l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~ 74 (323)
...|.+.|++++|.+ +|.+|...-+.+.+.++
T Consensus 200 ~~~A~~~gl~li~~G-H~~sE~~~~~~la~~L~ 231 (247)
T PRK10799 200 IHSAREQGLHFYAAG-HHATERGGIRALSEWLN 231 (247)
T ss_pred HHHHHHCCCeEEEcC-chHHHHHHHHHHHHHHH
Confidence 456778888888855 77777774444554443
No 78
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=44.86 E-value=2.9e+02 Score=26.87 Aligned_cols=125 Identities=13% Similarity=0.108 Sum_probs=74.1
Q ss_pred CCCCcHHHHHHHHHHHHHcC-CccEEEcC--CC--CHHHHHHHHH---hCCCCceeecccCChhhhhHHHHHHHHHhCce
Q 020679 140 IVPLDYEAVWEAMEECQNLG-LTKSIGVS--NF--ACKKLERLLA---TAKIPPAVNQVELNPVWQQKKLRVFCEKKGIH 211 (323)
Q Consensus 140 ~~~~~~~~~~~~L~~l~~~G-~Ir~iGvs--~~--~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~ 211 (323)
+.....+.+++.++.+++.. .++.|-+. ++ +.+.+.++++ ..++.+.+ +...+ -..++++..++.|+.
T Consensus 224 ~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~-~~~~~---~~~e~l~~l~~aG~~ 299 (472)
T TIGR03471 224 YRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSC-NARAN---VDYETLKVMKENGLR 299 (472)
T ss_pred eEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEE-EecCC---CCHHHHHHHHHcCCC
Confidence 33456899999999999874 56665543 33 2344444433 22232211 22222 246889999999988
Q ss_pred EEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHHHHHHHHhCC----cEEEeCC--CCHHHHHHhhccc
Q 020679 212 ITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQVSLRWVYQQG----VSLVVKS--FNKERMKENLDIF 279 (323)
Q Consensus 212 via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~----~~~i~g~--~~~~~l~enl~a~ 279 (323)
.+..+.-.+ ..+.++.+.+.+...-..-+++++...| ...|+|. .+.+.+++.++.+
T Consensus 300 ~v~iGiES~-----------s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~ 362 (472)
T TIGR03471 300 LLLVGYESG-----------DQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFA 362 (472)
T ss_pred EEEEcCCCC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 776555433 3455665543333333445677777777 3457784 7788888887653
No 79
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=44.77 E-value=97 Score=29.09 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEeccC
Q 020679 149 WEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 149 ~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~l 218 (323)
++.+.+|++...+. +.|=|-++..++..+++...++ ++|...... .+-..+...|+.+|+.++..+.+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d--~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAAD--VFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCC--EEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 45555566655554 5555666666666666654433 555443322 22255666777777776655433
No 80
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.29 E-value=2.4e+02 Score=25.28 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCC---HHHHH
Q 020679 99 LVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFA---CKKLE 175 (323)
Q Consensus 99 ~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~---~~~l~ 175 (323)
.-+..+-+.|.++|+|+|++-+.........+ .......+.++.+.++.+ +..+..+++... .+.++
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~ 89 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKG---------KSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLE 89 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccCC---------CccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHH
Confidence 34556667799999999999765543211110 001122456666666653 245555555443 34454
Q ss_pred HHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHHHHHHH
Q 020679 176 RLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQVSLRWV 255 (323)
Q Consensus 176 ~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~ 255 (323)
.+.+ +.++..-+.+..+.+..-.+.+++++++|..+...-..+. + ...+.+.+++++ +
T Consensus 90 ~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~-~--------~~~~~~~~~~~~------------~ 147 (266)
T cd07944 90 PASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAIS-G--------YSDEELLELLEL------------V 147 (266)
T ss_pred HHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeec-C--------CCHHHHHHHHHH------------H
Confidence 4433 3344333444445444447889999999987765433332 1 123444444332 2
Q ss_pred HhCC--cEEE---eCCCCHHHHHHhhcccc
Q 020679 256 YQQG--VSLV---VKSFNKERMKENLDIFD 280 (323)
Q Consensus 256 l~~~--~~~i---~g~~~~~~l~enl~a~~ 280 (323)
.+.| ...| .|.-+|+++.+-++++.
T Consensus 148 ~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 148 NEIKPDVFYIVDSFGSMYPEDIKRIISLLR 177 (266)
T ss_pred HhCCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 2234 2223 58888888888777654
No 81
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=44.17 E-value=32 Score=23.45 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 020679 235 VLKEIANARGKSVAQVSLRWVYQ 257 (323)
Q Consensus 235 ~l~~ia~~~~~s~~q~al~~~l~ 257 (323)
-+.+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 36799999999999999999763
No 82
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.81 E-value=1.6e+02 Score=27.89 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=60.8
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEE-----cC--CCCHHHHHHHHHhCC-C------C
Q 020679 119 YLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIG-----VS--NFACKKLERLLATAK-I------P 184 (323)
Q Consensus 119 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iG-----vs--~~~~~~l~~~~~~~~-~------~ 184 (323)
+-||.|+......--|.+. ..+++++++++.+..++.. |.|- +. |-+.++.+++.+... . +
T Consensus 232 iSLHA~~~e~R~~lmPin~----~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~ 306 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNR----RYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLL 306 (371)
T ss_pred EEeCCCCHHHHHHhcCccc----CCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCc
Confidence 6799987654433222221 1358899999988765422 2332 22 334566666555433 3 5
Q ss_pred ceeecccCChhhh-------h---HHHHHHHHHhCceEEEeccCCC
Q 020679 185 PAVNQVELNPVWQ-------Q---KKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 185 ~~~~q~~~~~~~~-------~---~~ll~~~~~~gi~via~~~l~~ 220 (323)
..+|-++||+... . ....+.++++||.+..+...|.
T Consensus 307 ~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 307 VHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred eEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 6789999998632 1 4566778899999999988864
No 83
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=42.63 E-value=1.6e+02 Score=27.52 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCcc-EEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEec
Q 020679 148 VWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 148 ~~~~L~~l~~~G~Ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~ 216 (323)
-++.+.+|++..-+. +.|=|.++..++..+++...++ ++|...... .+-..+.+.|+++|+.++.++
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVD--IIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCC--EEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 467777787776554 5566667888888887765544 666654432 223678888999999888655
No 84
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=42.30 E-value=2.4e+02 Score=25.62 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHH
Q 020679 100 VLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLA 179 (323)
Q Consensus 100 i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~ 179 (323)
-+..+-+.|.++|+++|.+-..+.|... | ...+.++.+..+.+...++...+. .....++.+++
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~-p--------------~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~ 90 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWV-P--------------QMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALA 90 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCcccc-c--------------ccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHH
Confidence 4455667799999999998744434211 1 112235555555544445555554 46778888877
Q ss_pred hCCCCceeecccCChhhh--------------hHHHHHHHHHhCceEEE
Q 020679 180 TAKIPPAVNQVELNPVWQ--------------QKKLRVFCEKKGIHITA 214 (323)
Q Consensus 180 ~~~~~~~~~q~~~~~~~~--------------~~~ll~~~~~~gi~via 214 (323)
.+ .+...+-++.|.... -.+.+++++++|+.+.+
T Consensus 91 ~g-~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 91 AG-ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred cC-CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 54 332212223332211 14678999999988764
No 85
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=41.89 E-value=2.4e+02 Score=24.64 Aligned_cols=114 Identities=6% Similarity=0.043 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCC-----
Q 020679 171 CKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGK----- 245 (323)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~----- 245 (323)
...++...+..+++....+++...-...+++....++.|+..++++.+.. ......+..+|++.|+
T Consensus 47 ~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s---------~~qr~~~e~vc~~~gl~~~~P 117 (222)
T TIGR00289 47 LHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIES---------NYQKSRIDKVCRELGLKSIAP 117 (222)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECcccc---------HHHHHHHHHHHHHcCCEEecc
Confidence 34444444444555433333221111125666667777877777666643 0113456677777653
Q ss_pred ----CHHHHHHHHHHhCC-cEEEeCCCCHHHHHHhhccccCcCCHHHHHHHhccCCCC
Q 020679 246 ----SVAQVSLRWVYQQG-VSLVVKSFNKERMKENLDIFDWELSAEELQKIEQIPQYR 298 (323)
Q Consensus 246 ----s~~q~al~~~l~~~-~~~i~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~ 298 (323)
++.++ +.+ +..| .++|+.+... .|.+. -++..|+.+.++.|.++.++.
T Consensus 118 LW~~d~~~l-~e~-i~~Gf~aiIv~v~~~-gL~~~--~LGr~id~~~~~~L~~l~~~~ 170 (222)
T TIGR00289 118 LWHADPEKL-MYE-VAEKFEVIIVSVSAM-GLDES--WLGRRIDKECIDDLKRLNEKY 170 (222)
T ss_pred ccCCCHHHH-HHH-HHcCCeEEEEEEccC-CCChH--HcCCccCHHHHHHHHHHHhhc
Confidence 55555 465 4778 5566655432 23322 345689999888888765543
No 86
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=41.25 E-value=2.4e+02 Score=27.19 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHc------CCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEecc
Q 020679 147 AVWEAMEECQNL------GLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 147 ~~~~~L~~l~~~------G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~ 217 (323)
+.++.+.+|++. ..=-..+=|.++...+.++++....+ ++|+..+-. .+-.++.++|+++||.++..+.
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d--~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~ 356 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGH--MVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGT 356 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCC--EEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 456777777765 33344466667888999988876554 777766543 3347899999999999998766
Q ss_pred C
Q 020679 218 L 218 (323)
Q Consensus 218 l 218 (323)
.
T Consensus 357 ~ 357 (408)
T TIGR01502 357 C 357 (408)
T ss_pred C
Confidence 5
No 87
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=40.44 E-value=2.3e+02 Score=23.98 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=25.2
Q ss_pred cccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHH
Q 020679 115 YIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKL 174 (323)
Q Consensus 115 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l 174 (323)
.+|.++||..+. .+..+.+.+......++.+|++.+...++
T Consensus 73 ~~d~Vqlhg~e~-------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES-------------------PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC-------------------HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 468899997531 12334444433456788999998765443
No 88
>PLN02489 homocysteine S-methyltransferase
Probab=39.57 E-value=3.2e+02 Score=25.44 Aligned_cols=215 Identities=14% Similarity=0.115 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcC-C--------------HHHHHHHHH---HHHHc---C----------CCCCCCc
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQ-S--------------EQPLGEAIA---EALRL---G----------LIKSRNE 83 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~Yg-s--------------E~~vG~~l~---~~~~~---g----------~~~~R~~ 83 (323)
++...++=+..+++|-+.+-|. .|+ | +++.-.+++ +...+ . ....+.+
T Consensus 54 Pe~V~~vH~~yl~AGAdvI~Tn-Ty~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 132 (335)
T PLN02489 54 PHLIRKVHLDYLEAGADIIITA-SYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRP 132 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEec-ccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCC
Confidence 5556666666679999999887 453 2 113322222 11110 0 0001345
Q ss_pred eEEeeecCCCC----------------CChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHH
Q 020679 84 LFITSKLWLGH----------------AHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEA 147 (323)
Q Consensus 84 ~~i~tK~~~~~----------------~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 147 (323)
++|+.-+++.. .+.+.+.+.....++.|--.-+|++.+--. ....+
T Consensus 133 ~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~------------------~~l~E 194 (335)
T PLN02489 133 ILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI------------------PNKLE 194 (335)
T ss_pred cEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc------------------CChHH
Confidence 77887775421 344667777777777764466899998743 23677
Q ss_pred HHHHHHHHHHcC--CccEEEcCCC---------CHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHh-CceEEEe
Q 020679 148 VWEAMEECQNLG--LTKSIGVSNF---------ACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKK-GIHITAY 215 (323)
Q Consensus 148 ~~~~L~~l~~~G--~Ir~iGvs~~---------~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~-gi~via~ 215 (323)
+..+++.+++.+ +--.|.++.. +...+...+... ..+..+-+++.....-..++...+.+ .+.+++|
T Consensus 195 ~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~-~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~vy 273 (335)
T PLN02489 195 AQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSC-KKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVY 273 (335)
T ss_pred HHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhc-CCceEEEecCCCHHHHHHHHHHHHhhcCCcEEEE
Confidence 877888888775 4444555432 122333333222 24456666765322224556555554 6677765
Q ss_pred ccCCCCCCCCCCCCccChHHHHHHHHHcCCC---HHHHHHHHHHhCCcEEEeCC--CCHHHHHHhhcccc
Q 020679 216 SPLGAKGTRWGTNRVMECQVLKEIANARGKS---VAQVSLRWVYQQGVSLVVKS--FNKERMKENLDIFD 280 (323)
Q Consensus 216 ~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s---~~q~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~ 280 (323)
--- |..+.... . .+...+..+ .++.+.+|. ..|...|=|+ ++|+||++.-++++
T Consensus 274 PNa---G~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~-~~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 274 PNS---GETYDGEA----K---EWVESTGVSDEDFVSYVNKWR-DAGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred CCC---CCCCCCcc----C---cccCCCCCCHHHHHHHHHHHH-HCCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 332 32221100 0 000012222 456677885 3466555444 88999998776654
No 89
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=39.16 E-value=3.2e+02 Score=25.42 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHHH----------------H-HHHHHHHHcCCCCCCCceEEeeecCCCCCCh
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQPL----------------G-EAIAEALRLGLIKSRNELFITSKLWLGHAHR 97 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~v----------------G-~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~ 97 (323)
.+...++.++|=+.|+-+|=|--.+.+-..+ - ..|+...+ .-..+.++|=+. +-
T Consensus 89 ~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~-----~~kPiIlSTGma----~~ 159 (347)
T COG2089 89 LEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK-----KGKPIILSTGMA----TI 159 (347)
T ss_pred HHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh-----cCCCEEEEcccc----cH
Confidence 6778889999999999999655444211111 0 01111111 123566666542 23
Q ss_pred hhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHH-HHHHHHHHHHcCCccEEEcCCCCHHHHHH
Q 020679 98 QLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEA-VWEAMEECQNLGLTKSIGVSNFACKKLER 176 (323)
Q Consensus 98 ~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~ 176 (323)
+.+.++++...++=. .|+.+||+...+. . ++++ -+.+|..|++.= ---||+|.|+..-+..
T Consensus 160 ~ei~~av~~~r~~g~---~~i~LLhC~s~YP------a--------p~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~ 221 (347)
T COG2089 160 EEIEEAVAILRENGN---PDIALLHCTSAYP------A--------PFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAP 221 (347)
T ss_pred HHHHHHHHHHHhcCC---CCeEEEEecCCCC------C--------CHHHhhHHHHHHHHHHh-CCccccccCccchhHH
Confidence 667777766555433 2999999875432 1 1222 234444444442 3479999999765443
Q ss_pred H
Q 020679 177 L 177 (323)
Q Consensus 177 ~ 177 (323)
+
T Consensus 222 l 222 (347)
T COG2089 222 L 222 (347)
T ss_pred H
Confidence 3
No 90
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=39.07 E-value=78 Score=31.15 Aligned_cols=128 Identities=18% Similarity=0.100 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCEE--ecCCCc---C-------CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCC-Chhh-------
Q 020679 40 ESVVHAIEVGYRHF--DTAAIY---Q-------SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHA-HRQL------- 99 (323)
Q Consensus 40 ~~l~~A~~~Gin~~--DTA~~Y---g-------sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~-~~~~------- 99 (323)
+.++...+.|++.+ =||..| | .-+.+..+-++.+... -+.++||++=++.-.. .|..
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~---L~Gk~~lTaGLGGMgGAQplA~~m~g~v 182 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD---LAGKLFLTAGLGGMGGAQPLAATMAGGV 182 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS----TT-EEEEE--STTCCHHHHHHHHTT-E
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC---CcceEEEEecccccccchHHHHHhcCce
Confidence 45566778888876 255554 2 3556666777766533 4778999988864321 0000
Q ss_pred ---HHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHH
Q 020679 100 ---VLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLER 176 (323)
Q Consensus 100 ---i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~ 176 (323)
++-.-++.-+|+.+.|+|.+. . +++++++..++.+++|+..+||+-..-.+.+++
T Consensus 183 ~l~vEvd~~ri~kR~~~g~ld~~~--~--------------------~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~ 240 (546)
T PF01175_consen 183 GLIVEVDPSRIEKRLEQGYLDEVT--D--------------------DLDEALARAKEARAKKEPLSIGLLGNAADLWEE 240 (546)
T ss_dssp EEEEES-HHHHHHHHHTTSSSEEE--S--------------------SHHHHHHHHHHHHHTT--EEEEEES-HHHHHHH
T ss_pred EEEEEECHHHHHHHHhCCCeeEEc--C--------------------CHHHHHHHHHHhhccCCeeEEEEeccHHHHHHH
Confidence 001134566788889999843 1 389999999999999999999999988888888
Q ss_pred HHHhCC-CCceeecccC
Q 020679 177 LLATAK-IPPAVNQVEL 192 (323)
Q Consensus 177 ~~~~~~-~~~~~~q~~~ 192 (323)
+++..- ++...-|+..
T Consensus 241 l~~~~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 241 LVERGIIPDLVTDQTSA 257 (546)
T ss_dssp HHHTT---SEE---SST
T ss_pred HHHcCCCCCcccCCCcc
Confidence 888642 2333447655
No 91
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=38.60 E-value=2.7e+02 Score=24.26 Aligned_cols=171 Identities=11% Similarity=0.080 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLE 114 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d 114 (323)
.....+++..|.+.|+..|=.+++...........+.. .+=+++....+. ...++. +...+++. .+
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~-------~~i~Il~GiEi~--~~~~~~----~~~~~~~~-~~ 80 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL-------LGFEIFRGVEIV--ASNPSK----LRGLVGKF-RK 80 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh-------cCCcEEeeEEEe--cCCHHH----HHHHHHhc-cC
Confidence 45678999999999999886665543110000111111 111133222222 112233 33333332 23
Q ss_pred cccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCC------HHHHHHHHHhCCCCceee
Q 020679 115 YIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFA------CKKLERLLATAKIPPAVN 188 (323)
Q Consensus 115 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~------~~~l~~~~~~~~~~~~~~ 188 (323)
.+|++.+| |. .+.+ ...+.+.+.|--||--... ...+.++....++ ++
T Consensus 81 ~~d~v~v~-~~-------------------~~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv---~l 134 (237)
T PRK00912 81 KVDVLAVH-GG-------------------DEKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNV---AI 134 (237)
T ss_pred cccEEEEe-CC-------------------CHHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCe---EE
Confidence 67888899 21 1222 2357888888888865421 1122222222222 34
Q ss_pred cccCChhh------------hhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHHH
Q 020679 189 QVELNPVW------------QQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQVS 251 (323)
Q Consensus 189 q~~~~~~~------------~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~a 251 (323)
.++++++. +...++..|++.|+.++.-|--.. +..+-.......++...|.+..++-
T Consensus 135 EIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~------~~~l~~~~~~~~l~~~~Gl~~~~~~ 203 (237)
T PRK00912 135 EFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS------CYDLRSPREMIALAELFGMEEDEAL 203 (237)
T ss_pred EEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc------ccccCCHHHHHHHHHHcCCCHHHHH
Confidence 44444321 125789999999988876443322 1222344667777777777655543
No 92
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=38.21 E-value=1.1e+02 Score=25.11 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcC-CHHHHHHHHHHHHHcCCCCCCCceEEee-ecCCCCCChhhHHHHHHHHHHHcC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQ-SEQPLGEAIAEALRLGLIKSRNELFITS-KLWLGHAHRQLVLPALQTSLKNLG 112 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~vG~~l~~~~~~g~~~~R~~~~i~t-K~~~~~~~~~~i~~~le~SL~~Lg 112 (323)
++...-.+++|-+.||.+|=.|+.|| +-..+-+.+. | . =++++.| ..+...-....+.+.++.-|+..|
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g---~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erG 83 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G---D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERG 83 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c---C-ceEEEEEeecccccCCceecCHHHHHHHHHcC
Confidence 45566677888899999999999997 3222222222 1 1 1244444 344444444567788999999998
Q ss_pred CCc
Q 020679 113 LEY 115 (323)
Q Consensus 113 ~d~ 115 (323)
.+-
T Consensus 84 a~v 86 (186)
T COG1751 84 AKV 86 (186)
T ss_pred cee
Confidence 643
No 93
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=38.14 E-value=1.1e+02 Score=25.47 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHHcC-CccEEEcCCCC--HHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEE
Q 020679 144 DYEAVWEAMEECQNLG-LTKSIGVSNFA--CKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITA 214 (323)
Q Consensus 144 ~~~~~~~~L~~l~~~G-~Ir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 214 (323)
...+++++|.++++.| +|..+|..+.. ...+.+++ +. .+.+..|+-...-...+..+++.|+.++.
T Consensus 62 s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 62 SGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp -HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T---EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred CHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CC--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 3678999999988776 66666666654 34555554 33 35555555433336788899999999987
No 94
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=38.07 E-value=1.2e+02 Score=26.91 Aligned_cols=66 Identities=18% Similarity=0.367 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCC---------CHHHHHHHHHHhCC--cEEEeCCC
Q 020679 199 KKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGK---------SVAQVSLRWVYQQG--VSLVVKSF 267 (323)
Q Consensus 199 ~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~---------s~~q~al~~~l~~~--~~~i~g~~ 267 (323)
.++.++|+++||.+++ +|+.. +.+..+ .++++ -..--.|+++-+.+ +..=.|++
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~-------------~s~d~l-~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s 123 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDE-------------ESVDFL-EELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS 123 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SH-------------HHHHHH-HHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-
T ss_pred HHHHHHHHHcCCEEEE-CCCCH-------------HHHHHH-HHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC
Confidence 6789999999999887 67743 122222 33322 11222566666666 44446999
Q ss_pred CHHHHHHhhccc
Q 020679 268 NKERMKENLDIF 279 (323)
Q Consensus 268 ~~~~l~enl~a~ 279 (323)
+.+++++.++.+
T Consensus 124 tl~EI~~Av~~~ 135 (241)
T PF03102_consen 124 TLEEIERAVEVL 135 (241)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999988877
No 95
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=37.73 E-value=3e+02 Score=24.67 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=60.6
Q ss_pred cccccccccCC-----CCChHHHHHHHHHHHHcCCCEEecCCC-cC--CHHHHHHHHHHHHHcCCCCCCCceEEeeecCC
Q 020679 21 LVGFGTAQFPF-----GAATEVVKESVVHAIEVGYRHFDTAAI-YQ--SEQPLGEAIAEALRLGLIKSRNELFITSKLWL 92 (323)
Q Consensus 21 ~lglG~~~~~~-----~~~~~~~~~~l~~A~~~Gin~~DTA~~-Yg--sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~ 92 (323)
.||+++|.... .. .+...+-....+.+..|.+..-.. |. +++.+-+|.++ ..+++..+.|+..
T Consensus 4 ~IG~sGW~~~~w~~~~yp-~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~--------~p~~FrFsvK~~~ 74 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYP-EGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE--------TPDDFRFSVKAPR 74 (263)
T ss_pred EEeecCCCcccccccccC-cccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh--------CCCCeEEEEEecc
Confidence 46666666543 12 223333344556667777765444 44 78888888774 5889999999853
Q ss_pred C----CCCh---hhHHHHHHHHHHHcCCCcccEEEeeCCCCC
Q 020679 93 G----HAHR---QLVLPALQTSLKNLGLEYIDLYLIHFPGSL 127 (323)
Q Consensus 93 ~----~~~~---~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~ 127 (323)
. .... ..+.+.+.+-+..|| +++..+++..|-..
T Consensus 75 ~iTH~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 75 AITHQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred cccchhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 1 1112 234445555566777 69999999998654
No 96
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=37.69 E-value=2.6e+02 Score=23.89 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHcCCCEEecC----------CCcC-----CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhh
Q 020679 35 TEVVKESVVHAIEVGYRHFDTA----------AIYQ-----SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQL 99 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA----------~~Yg-----sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~ 99 (323)
.++..+....+.++|+..||-- +.|| .-+.+-+.++... +.. . +-|+.|+.........
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~-~~~--~---~~v~vk~r~~~~~~~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVR-EAV--P---IPVTVKIRLGWDDEEE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHH-Hhc--C---CCEEEEEeeccCCchH
Confidence 6777888888889999999753 3466 3444555555431 111 1 3456665322111112
Q ss_pred HHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCC-CHHHHHHHH
Q 020679 100 VLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNF-ACKKLERLL 178 (323)
Q Consensus 100 i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~-~~~~l~~~~ 178 (323)
..+ +-+.+...|+ |.+.+|....... ......|+.+.++++.-.+.-++..+. +.+++.+++
T Consensus 140 ~~~-~~~~l~~~Gv---d~i~v~~~~~~~~-------------~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l 202 (231)
T cd02801 140 TLE-LAKALEDAGA---SALTVHGRTREQR-------------YSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCL 202 (231)
T ss_pred HHH-HHHHHHHhCC---CEEEECCCCHHHc-------------CCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHH
Confidence 222 2233455665 5566775432110 000113566677777777777777665 577788877
Q ss_pred HhCCCC
Q 020679 179 ATAKIP 184 (323)
Q Consensus 179 ~~~~~~ 184 (323)
+....+
T Consensus 203 ~~~gad 208 (231)
T cd02801 203 EQTGVD 208 (231)
T ss_pred HhcCCC
Confidence 764444
No 97
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=37.64 E-value=3.4e+02 Score=25.27 Aligned_cols=139 Identities=9% Similarity=0.109 Sum_probs=71.6
Q ss_pred ChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHH
Q 020679 96 HRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLE 175 (323)
Q Consensus 96 ~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~ 175 (323)
+.+.+.+.++.. ...|..++.+..-+.|+ ..++.+.+.++.++++.- .+-++.+++..+.
T Consensus 80 ~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-----------------~~~~~~~e~i~~Ik~~~p--~i~i~~~~~~ei~ 139 (351)
T TIGR03700 80 SLEEIVARVKEA-YAPGATEVHIVGGLHPN-----------------LPFEWYLDMIRTLKEAYP--DLHVKAFTAVEIH 139 (351)
T ss_pred CHHHHHHHHHHH-HHCCCcEEEEecCCCCC-----------------CCHHHHHHHHHHHHHHCC--CceEEeCCHHHHH
Confidence 455666655543 44677776665433332 125566666666766642 3334444455444
Q ss_pred HHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHH--HHHH
Q 020679 176 RLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQ--VSLR 253 (323)
Q Consensus 176 ~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q--~al~ 253 (323)
.+...... ..++.+...++.|+..+... | ...+..+.+..++.. +.+..+ -+++
T Consensus 140 ~~~~~~g~-------------~~~e~l~~LkeAGld~~~~~-----g-----~E~~~~~v~~~i~~~-~~~~~~~l~~i~ 195 (351)
T TIGR03700 140 HFSKISGL-------------PTEEVLDELKEAGLDSMPGG-----G-----AEIFAEEVRQQICPE-KISAERWLEIHR 195 (351)
T ss_pred HHHHHcCC-------------CHHHHHHHHHHcCCCcCCCC-----c-----ccccCHHHHhhcCCC-CCCHHHHHHHHH
Confidence 33322211 13566777778787765421 1 122233444445443 344455 2777
Q ss_pred HHHhCC----cEEEeCC-CCHHHHHHhhcc
Q 020679 254 WVYQQG----VSLVVKS-FNKERMKENLDI 278 (323)
Q Consensus 254 ~~l~~~----~~~i~g~-~~~~~l~enl~a 278 (323)
++...| +..++|. .++++.-+.+..
T Consensus 196 ~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~ 225 (351)
T TIGR03700 196 TAHELGLKTNATMLYGHIETPAHRVDHMLR 225 (351)
T ss_pred HHHHcCCCcceEEEeeCCCCHHHHHHHHHH
Confidence 777777 4557786 345555444443
No 98
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=37.57 E-value=4.1e+02 Score=26.12 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLE 114 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d 114 (323)
.+-....++.|.++||..|=..+.-.-.+.+-.+++...+.|. .-.+.|+-.. .+.++.+...+.+++ +..+|.+
T Consensus 104 ddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~---~~~~~i~yt~-sp~~t~~y~~~~a~~-l~~~Gad 178 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGK---EAQLCIAYTT-SPVHTLNYYLSLVKE-LVEMGAD 178 (468)
T ss_pred chHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCC---EEEEEEEEEe-CCcCcHHHHHHHHHH-HHHcCCC
Confidence 4667778999999999998777765534444444443322242 1112222222 234445556555555 4567865
Q ss_pred cccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCC
Q 020679 115 YIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFA 170 (323)
Q Consensus 115 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~ 170 (323)
. +.|-.... ...+.++.+-+..+++... ..||+-.|+
T Consensus 179 ~---I~IkDtaG---------------~l~P~~v~~Lv~alk~~~~-~pi~~H~Hn 215 (468)
T PRK12581 179 S---ICIKDMAG---------------ILTPKAAKELVSGIKAMTN-LPLIVHTHA 215 (468)
T ss_pred E---EEECCCCC---------------CcCHHHHHHHHHHHHhccC-CeEEEEeCC
Confidence 4 44433221 1346667777777776544 357887776
No 99
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=37.06 E-value=3.2e+02 Score=26.11 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhh---hHHHHHHHHHhCceEEEeccCCC
Q 020679 146 EAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQ---QKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 146 ~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~via~~~l~~ 220 (323)
...+..+..+.+.+.++.+-+...+.+.++++++. ..+..++..+-|+... -+++.++|+++|+-++.=..++.
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 34555566655555566666665567777776642 3444555556666433 27889999999999887666543
No 100
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=36.66 E-value=1.7e+02 Score=27.21 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCc-cEEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEeccC
Q 020679 148 VWEAMEECQNLGLT-KSIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 148 ~~~~L~~l~~~G~I-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~l 218 (323)
-++.+.++++.-.+ -+.|=|.++...+..+++...++ ++|+..... .+-..+..+|+.+|+.++..+..
T Consensus 216 d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 216 DLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACK--IINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCC--EEEecccccCCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 46667777666433 35677778888888888776544 666655432 33367889999999998775444
No 101
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=36.56 E-value=2.3e+02 Score=24.46 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcC----CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHH
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQ----SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKN 110 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~Yg----sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~ 110 (323)
.++.....+.+.++|..|+=|+..|+ +.+-+ +.+++. -++. +-.|....-.+.+...+-++.--.|
T Consensus 131 ~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv-~~m~~~-------v~~~--v~IKaaGGirt~~~a~~~i~aGa~r 200 (211)
T TIGR00126 131 DEEIRKACEICIDAGADFVKTSTGFGAGGATVEDV-RLMRNT-------VGDT--IGVKASGGVRTAEDAIAMIEAGASR 200 (211)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHH-HHHHHH-------hccC--CeEEEeCCCCCHHHHHHHHHHhhHH
Confidence 57777899999999999999998886 22222 233333 1222 4455533333668888889999999
Q ss_pred cCCCc
Q 020679 111 LGLEY 115 (323)
Q Consensus 111 Lg~d~ 115 (323)
+|+++
T Consensus 201 iGts~ 205 (211)
T TIGR00126 201 IGASA 205 (211)
T ss_pred hCcch
Confidence 99865
No 102
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=36.49 E-value=3.1e+02 Score=24.41 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=62.6
Q ss_pred ChhhHHHHHHHHHHHcCCCcccEEE-eeCCCCCCCCCCCCCCCCCCCCCcHH----HHHHHHHHHHHc-CCccEEEcCCC
Q 020679 96 HRQLVLPALQTSLKNLGLEYIDLYL-IHFPGSLKPGTGFPFNKEDIVPLDYE----AVWEAMEECQNL-GLTKSIGVSNF 169 (323)
Q Consensus 96 ~~~~i~~~le~SL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~~l~~~-G~Ir~iGvs~~ 169 (323)
+++.+.+..++.+ .-|.+.||+-- --+|+.. ..+.+ .+...++.+++. +. -+.+-++
T Consensus 21 ~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~--------------~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~ 83 (257)
T TIGR01496 21 SVDKAVAHAERML-EEGADIIDVGGESTRPGAD--------------RVSPEEELNRVVPVIKALRDQPDV--PISVDTY 83 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCC--------------CCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCC
Confidence 4455555555554 46899999921 1112110 11122 355566666665 43 4889999
Q ss_pred CHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEecc
Q 020679 170 ACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 170 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~ 217 (323)
+++.++.+++.+ . ..+|-+..-. ..++++.++++|..++.+..
T Consensus 84 ~~~vi~~al~~G-~-~iINsis~~~---~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 84 RAEVARAALEAG-A-DIINDVSGGQ---DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred CHHHHHHHHHcC-C-CEEEECCCCC---CchhHHHHHHcCCcEEEEeC
Confidence 999999999874 2 3455443321 46788999999999999543
No 103
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=36.37 E-value=1.3e+02 Score=25.74 Aligned_cols=67 Identities=7% Similarity=0.101 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHH--cCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccC
Q 020679 146 EAVWEAMEECQN--LGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 146 ~~~~~~L~~l~~--~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l 218 (323)
+.+...++.+++ .+. -+.+-++.++.++.+++. ..++..+...+.. ..++++.++++|..++++..-
T Consensus 57 ~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 57 ERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 345555666664 344 677888899999999998 5554444444332 568999999999999997666
No 104
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=36.12 E-value=3.9e+02 Score=25.46 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=65.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCccEEEcCC-----CC-----HHHHHHHHHhC-CCC-c-eeecccCChhhhhHHHHHHHH
Q 020679 140 IVPLDYEAVWEAMEECQNLGLTKSIGVSN-----FA-----CKKLERLLATA-KIP-P-AVNQVELNPVWQQKKLRVFCE 206 (323)
Q Consensus 140 ~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~-----~~-----~~~l~~~~~~~-~~~-~-~~~q~~~~~~~~~~~ll~~~~ 206 (323)
+...+.+.+.+.++.+++.| ++.|-+.. +. ...+.++++.. ..+ . .+.....++..-..++++..+
T Consensus 164 ~r~r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~ 242 (414)
T TIGR01579 164 SRSVPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIA 242 (414)
T ss_pred CccCCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHH
Confidence 44567899999999999987 55554421 21 11233333321 111 1 111112233223478888888
Q ss_pred HhC--ceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHHHHHHHHh--CC----cEEEeCC--CCHHHHHHhh
Q 020679 207 KKG--IHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQVSLRWVYQ--QG----VSLVVKS--FNKERMKENL 276 (323)
Q Consensus 207 ~~g--i~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~--~~----~~~i~g~--~~~~~l~enl 276 (323)
+.+ ...+. -++-+ ..++.++.+.+.+...-..-+++.+.+ .+ ...|+|. .+.+.+++.+
T Consensus 243 ~~~~~~~~l~-lglES----------gs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl 311 (414)
T TIGR01579 243 SEKRLCPHLH-LSLQS----------GSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETL 311 (414)
T ss_pred hcCccCCCeE-ECCCc----------CChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHH
Confidence 765 22222 22222 133455555444433344445555555 34 2457773 6777777777
Q ss_pred ccc
Q 020679 277 DIF 279 (323)
Q Consensus 277 ~a~ 279 (323)
+.+
T Consensus 312 ~~i 314 (414)
T TIGR01579 312 RMV 314 (414)
T ss_pred HHH
Confidence 654
No 105
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=36.10 E-value=92 Score=23.38 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEeccCCC
Q 020679 167 SNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 167 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
+.++...+.++++...++ ++|...... .+-..+.++|+++|+.+...+. .+
T Consensus 3 ~~~~~~~~~~li~~~a~d--~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~ 56 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVD--IVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ES 56 (111)
T ss_dssp TSSSHHHHHHHHHTTSCS--EEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SS
T ss_pred CCCCHHHHHHHHHcCCCC--EEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CC
Confidence 567788899998876654 777654332 2236889999999999999887 54
No 106
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=35.70 E-value=69 Score=28.95 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 169 FACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
|+...+.++.+..+++..++-..+|+-.. ++.++|++.|+.+++.-|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 34555666777777877777667765443 899999999999999999854
No 107
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=35.61 E-value=4.2e+02 Score=25.66 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=64.4
Q ss_pred CCcCCHHHHHHHHHHHHHcCCCCCC-CceEEeeecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCC
Q 020679 57 AIYQSEQPLGEAIAEALRLGLIKSR-NELFITSKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPF 135 (323)
Q Consensus 57 ~~YgsE~~vG~~l~~~~~~g~~~~R-~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~ 135 (323)
-.||.++.|-++|++..+.. ++ +-++|.|-+... ...+.+..-+++.-++++ +.++.+|.|.......
T Consensus 97 ~V~Gg~~~L~~aI~~~~~~~---~p~~~I~V~~tC~~~-liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~---- 165 (443)
T TIGR01862 97 IVFGGEKKLKKLIHEAFTEF---PLIKAISVYATCPTG-LIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQ---- 165 (443)
T ss_pred eeeCcHHHHHHHHHHHHHhC---CccceEEEECCChHH-HhccCHHHHHHHHHHhcC---CCEEEEecCCccCCcc----
Confidence 35788888888988876543 44 567777765321 112334444444334444 6899999886542100
Q ss_pred CCCCCCCCcHHHHHHH-HHHHH--------HcCCccEEEcCCCC--HHHHHHHHHhCCCCce
Q 020679 136 NKEDIVPLDYEAVWEA-MEECQ--------NLGLTKSIGVSNFA--CKKLERLLATAKIPPA 186 (323)
Q Consensus 136 ~~~~~~~~~~~~~~~~-L~~l~--------~~G~Ir~iGvs~~~--~~~l~~~~~~~~~~~~ 186 (323)
......+.++ ++.+. ++++|.-||-.++. .+.+.++++..++++.
T Consensus 166 ------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 166 ------SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred ------chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEE
Confidence 0112333333 22343 35778888865543 4578888887776643
No 108
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=35.42 E-value=2.3e+02 Score=22.66 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=36.0
Q ss_pred CCccEEEcCCCCHHH----HHHHHHhCCCCceeecccCChhhh----h------HHHHHHHHHhCceEEEecc
Q 020679 159 GLTKSIGVSNFACKK----LERLLATAKIPPAVNQVELNPVWQ----Q------KKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 159 G~Ir~iGvs~~~~~~----l~~~~~~~~~~~~~~q~~~~~~~~----~------~~ll~~~~~~gi~via~~~ 217 (323)
-.+...|++..+... +...+.....+.+++++.-|-... + ..+++.+++++..++..++
T Consensus 37 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 37 VTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred eEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 346677888876544 333444434555566666553221 1 5678888888988887654
No 109
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.37 E-value=3.8e+02 Score=25.08 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=83.7
Q ss_pred CCCCCCceeeCCCCCccCcccccccccCCCCChHHHHHHHHHHHHcCCC--EEecCCCcCCHHHHHHHHHHHHHcCCCCC
Q 020679 3 KEVSIPEAPLGSTGKTIPLVGFGTAQFPFGAATEVVKESVVHAIEVGYR--HFDTAAIYQSEQPLGEAIAEALRLGLIKS 80 (323)
Q Consensus 3 ~~~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~YgsE~~vG~~l~~~~~~g~~~~ 80 (323)
-+++|++..++. |..|-.+|+|+ +| .=.+..|-..|.+ .|||++. ..| ++++.+ |
T Consensus 170 vYspLk~~g~~p-G~~vgI~GlGG--LG--------h~aVq~AKAMG~rV~vis~~~~-kke----ea~~~L---G---- 226 (360)
T KOG0023|consen 170 VYSPLKRSGLGP-GKWVGIVGLGG--LG--------HMAVQYAKAMGMRVTVISTSSK-KKE----EAIKSL---G---- 226 (360)
T ss_pred EeehhHHcCCCC-CcEEEEecCcc--cc--------hHHHHHHHHhCcEEEEEeCCch-hHH----HHHHhc---C----
Confidence 467888888984 99999999998 33 1245666666766 5676642 123 344543 3
Q ss_pred CCceEEeeecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCC
Q 020679 81 RNELFITSKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGL 160 (323)
Q Consensus 81 R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 160 (323)
-|.++++||- ..+.+++..++. .+.+.+--+- ....-..+.-+|..|+
T Consensus 227 Ad~fv~~~~d-------~d~~~~~~~~~d-g~~~~v~~~a------------------------~~~~~~~~~~lk~~Gt 274 (360)
T KOG0023|consen 227 ADVFVDSTED-------PDIMKAIMKTTD-GGIDTVSNLA------------------------EHALEPLLGLLKVNGT 274 (360)
T ss_pred cceeEEecCC-------HHHHHHHHHhhc-Ccceeeeecc------------------------ccchHHHHHHhhcCCE
Confidence 4556666652 345555555554 3333322220 1123356777899999
Q ss_pred ccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhh---hhHHHHHHHHHhCceE
Q 020679 161 TKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVW---QQKKLRVFCEKKGIHI 212 (323)
Q Consensus 161 Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~v 212 (323)
+-.+|+-... ..+.-.--. +. ...+.-+..- ..+++++||.+++|..
T Consensus 275 ~V~vg~p~~~-~~~~~~~li--l~--~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 275 LVLVGLPEKP-LKLDTFPLI--LG--RKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEEEeCcCCc-ccccchhhh--cc--cEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 9999997652 221111000 00 1111222221 2378999999998654
No 110
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=35.23 E-value=21 Score=31.45 Aligned_cols=59 Identities=27% Similarity=0.229 Sum_probs=34.3
Q ss_pred CCCCCccCcccccccccCC-------------CCChHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHH
Q 020679 13 GSTGKTIPLVGFGTAQFPF-------------GAATEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEAL 73 (323)
Q Consensus 13 g~tg~~vs~lglG~~~~~~-------------~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~ 73 (323)
|+....|.++++.+...+. .+ -+-.......|.+.|+++||.+ +|.+|+..=+.|.+++
T Consensus 164 g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~IT-Gd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~L 235 (241)
T PF01784_consen 164 GDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYIT-GDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAEWL 235 (241)
T ss_dssp SCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEE-SS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHHH
T ss_pred CCCCCcccEEEEEcccCccHHHHHHhCCCeEEEE-ccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHHH
Confidence 4667788888776543221 01 1223345566788899988866 7777776655555543
No 111
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=34.96 E-value=4.3e+02 Score=25.62 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=43.4
Q ss_pred CCCCCChhhHHHHHHHHHHHcCCCcccEEEe-eCCCCCCCCCCCCCCCCCCCCCcHHHHH----HHHHHHHHcCCccEEE
Q 020679 91 WLGHAHRQLVLPALQTSLKNLGLEYIDLYLI-HFPGSLKPGTGFPFNKEDIVPLDYEAVW----EAMEECQNLGLTKSIG 165 (323)
Q Consensus 91 ~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~L~~l~~~G~Ir~iG 165 (323)
+.+..+.+.+.+.++..+ .|+.+++.+|-+ |.|........ .......+.++.+ .+.+.|.+.|.. .+|
T Consensus 212 GlPgqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~----~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~ 285 (453)
T PRK13347 212 GLPHQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRL----IDEAALPDAEERLRQARAVADRLLAAGYV-PIG 285 (453)
T ss_pred eCCCCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhc----CCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEe
Confidence 445567788888777766 489999988866 33321100000 0000011222322 356778888974 599
Q ss_pred cCCCCHH
Q 020679 166 VSNFACK 172 (323)
Q Consensus 166 vs~~~~~ 172 (323)
+++|...
T Consensus 286 ~~~far~ 292 (453)
T PRK13347 286 LDHFALP 292 (453)
T ss_pred ccceeCC
Confidence 9999853
No 112
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=34.75 E-value=2e+02 Score=26.50 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCc-cEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccC
Q 020679 149 WEAMEECQNLGLT-KSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 149 ~~~L~~l~~~G~I-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l 218 (323)
++.+.+|++.-.+ -..|=|-++...+..+++....+ ++|+.....---..+.+.|+.+|+.++..+.+
T Consensus 206 ~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d--~v~ik~~k~GGi~~~~~~a~~~gi~~~~~~~~ 274 (320)
T PRK02714 206 FDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRG--IFVIKPAIAGSPSRLRQFCQQHPLDAVFSSVF 274 (320)
T ss_pred HHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCC--EEEEcchhcCCHHHHHHHHHHhCCCEEEEech
Confidence 4555555554332 34455555666666665544322 44444433222245566677777777765444
No 113
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=34.16 E-value=4.8e+02 Score=25.90 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcC-CCcccEEEeeCCCCCCCCCCCCCCC
Q 020679 59 YQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLG-LEYIDLYLIHFPGSLKPGTGFPFNK 137 (323)
Q Consensus 59 YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~ 137 (323)
+|.++.+-++|++..+.- +.+-++|.|-+.+ +-|-..++...+.++ ..-++++.+|.|.....
T Consensus 67 ~Gg~~kL~~~I~~~~~~~---~P~~I~V~tTC~~-----eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~-------- 130 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE---RPDLIVLTPTCTS-----SILQEDLQNFVDRASIESDSDVILADVNHYRVN-------- 130 (513)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEECCCCch-----hhhhcCHHHHHHHhhcccCCCEEEeCCCCCccc--------
Confidence 366666666776653321 4455666665532 222222333333222 12368999999854321
Q ss_pred CCCCCCcHHHHHHHHHH-H--------------HHcCCccEEEcCC------CCHHHHHHHHHhCCCCceee-ccc----
Q 020679 138 EDIVPLDYEAVWEAMEE-C--------------QNLGLTKSIGVSN------FACKKLERLLATAKIPPAVN-QVE---- 191 (323)
Q Consensus 138 ~~~~~~~~~~~~~~L~~-l--------------~~~G~Ir~iGvs~------~~~~~l~~~~~~~~~~~~~~-q~~---- 191 (323)
.+ ...+.+++++-+ + +..++|.-||.++ .+...++++++..++.+.++ -..
T Consensus 131 -~~--~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~ 207 (513)
T CHL00076 131 -EL--QAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVE 207 (513)
T ss_pred -HH--HHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHH
Confidence 00 011222222221 1 2346799998774 24567888888776654321 111
Q ss_pred ---------CChhh-hh--HHHHHHHH-HhCceEEEeccCCC
Q 020679 192 ---------LNPVW-QQ--KKLRVFCE-KKGIHITAYSPLGA 220 (323)
Q Consensus 192 ---------~~~~~-~~--~~ll~~~~-~~gi~via~~~l~~ 220 (323)
+|+.. +. ..+.++.+ +.|+.++...|++-
T Consensus 208 di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi 249 (513)
T CHL00076 208 DLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGI 249 (513)
T ss_pred HHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCH
Confidence 11111 11 22344443 56999887778754
No 114
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=33.99 E-value=3.9e+02 Score=25.64 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=61.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcC-CCcccEEEeeCCCCCCCCCCCCCC
Q 020679 58 IYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLG-LEYIDLYLIHFPGSLKPGTGFPFN 136 (323)
Q Consensus 58 ~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~ 136 (323)
.||.|+.+-+++++..+.- +.+-++|.|-+.+.-. .+.+..-+++.-++.. ...+.++.+|.|+....-
T Consensus 62 VfGg~~~L~~~i~~~~~~~---~p~~I~V~ttc~~eiI-GdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~------ 131 (417)
T cd01966 62 ILGGGENLEEALDTLAERA---KPKVIGLLSTGLTETR-GEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSL------ 131 (417)
T ss_pred EECCHHHHHHHHHHHHHhc---CCCEEEEECCCccccc-ccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcH------
Confidence 5788888888888765332 4555777777643221 2334433333333311 014678888888653210
Q ss_pred CCCCCCCcHHHHHHHHHH-H--------HHcCCccEEEcCCCC---HHHHHHHHHhCCCCce
Q 020679 137 KEDIVPLDYEAVWEAMEE-C--------QNLGLTKSIGVSNFA---CKKLERLLATAKIPPA 186 (323)
Q Consensus 137 ~~~~~~~~~~~~~~~L~~-l--------~~~G~Ir~iGvs~~~---~~~l~~~~~~~~~~~~ 186 (323)
....+.++++|.+ + +..++|.-||-++.+ .+.++++++..++.+.
T Consensus 132 -----~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~ 188 (417)
T cd01966 132 -----EDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPI 188 (417)
T ss_pred -----HHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 1123334444332 2 235678889755543 3556777777666643
No 115
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.87 E-value=4.4e+02 Score=25.34 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=64.0
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCC
Q 020679 58 IYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNK 137 (323)
Q Consensus 58 ~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 137 (323)
.||.++-|-+++++..+.- +.+-++|.|-+.+. .-.+.+..-+++. +++ .++++.+|.|......
T Consensus 67 V~Gg~~kL~~~I~~~~~~~---~p~~I~V~ttC~~~-~IGdDi~~v~~~~-~~~---~~~vi~v~t~gf~g~~------- 131 (427)
T cd01971 67 VFGGEDRLRELIKSTLSII---DADLFVVLTGCIAE-IIGDDVGAVVSEF-QEG---GAPIVYLETGGFKGNN------- 131 (427)
T ss_pred EeCCHHHHHHHHHHHHHhC---CCCEEEEEcCCcHH-HhhcCHHHHHHHh-hhc---CCCEEEEECCCcCccc-------
Confidence 5788888888888765432 45557777765321 1123344334433 333 3688999988754321
Q ss_pred CCCCCCcHHHHHHHHHH-H------HHcCCccEEEcCC-------CCHHHHHHHHHhCCCCceee
Q 020679 138 EDIVPLDYEAVWEAMEE-C------QNLGLTKSIGVSN-------FACKKLERLLATAKIPPAVN 188 (323)
Q Consensus 138 ~~~~~~~~~~~~~~L~~-l------~~~G~Ir~iGvs~-------~~~~~l~~~~~~~~~~~~~~ 188 (323)
....+.++++|-+ + ++.+.|.-||..+ .+...+.++++..++.+.++
T Consensus 132 ----~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 132 ----YAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred ----ccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 1123444444443 2 2335688898642 23577888888877665444
No 116
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=33.39 E-value=1.9e+02 Score=23.29 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=31.6
Q ss_pred HHHHHHHH-HHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEee
Q 020679 38 VKESVVHA-IEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITS 88 (323)
Q Consensus 38 ~~~~l~~A-~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~t 88 (323)
....|... -+.|++..+........+.+-+++++.+++ .+.+++|+|
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~----~~~DlVitt 68 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADE----DGVDLILTT 68 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhc----CCCCEEEEC
Confidence 33344444 478998887766666777788888775331 267888888
No 117
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.34 E-value=4.7e+02 Score=25.55 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCCEEe--------cCCCcC-------CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHH
Q 020679 37 VVKESVVHAIEVGYRHFD--------TAAIYQ-------SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVL 101 (323)
Q Consensus 37 ~~~~~l~~A~~~Gin~~D--------TA~~Yg-------sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~ 101 (323)
.-.++++.|+|+|.=-+- |+..|. .++..+.++.-.. .+..+.-+|... -....+.
T Consensus 183 aMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~------ag~~iLqst~d~---~egaa~L 253 (579)
T COG3653 183 AMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVAR------AGGRILQSTHDR---DEGAAAL 253 (579)
T ss_pred HHHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHH------hcCceeEeeccc---cchHHHH
Confidence 356889999999887666 777775 3667777765331 233344344321 1235667
Q ss_pred HHHHHHHHHc-CCCcccEEEeeCCC
Q 020679 102 PALQTSLKNL-GLEYIDLYLIHFPG 125 (323)
Q Consensus 102 ~~le~SL~~L-g~d~iDl~~lH~p~ 125 (323)
+.++++-++- +...+-+.+.|.-+
T Consensus 254 ~~l~~a~ri~~R~~~vr~v~s~~a~ 278 (579)
T COG3653 254 EALLEASRIGNRRKGVRMVMSHSAD 278 (579)
T ss_pred HHHHHHHHhcCcccCceEEEecccc
Confidence 7777777776 44567888888654
No 118
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=33.12 E-value=1.1e+02 Score=28.42 Aligned_cols=72 Identities=18% Similarity=0.335 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHH-HHHcCCC----HHHHHHHHHHhCC--cEEEeCCCCH
Q 020679 197 QQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEI-ANARGKS----VAQVSLRWVYQQG--VSLVVKSFNK 269 (323)
Q Consensus 197 ~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~i-a~~~~~s----~~q~al~~~l~~~--~~~i~g~~~~ 269 (323)
....+..+|++.||.++. +||.. .. .+.+..+ ...+.+. .--=.|.|+.+.+ ...-.|+.+.
T Consensus 91 ~~~~Lke~a~~~Gi~~~S-SPfd~-~s---------vd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~ 159 (347)
T COG2089 91 WHAQLKEYARKRGIIFFS-SPFDL-TA---------VDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATI 159 (347)
T ss_pred HHHHHHHHHHHcCeEEEe-cCCCH-HH---------HHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccH
Confidence 347899999999999887 88864 11 0111111 0001000 0111355655554 4445678888
Q ss_pred HHHHHhhccc
Q 020679 270 ERMKENLDIF 279 (323)
Q Consensus 270 ~~l~enl~a~ 279 (323)
+++++.++.+
T Consensus 160 ~ei~~av~~~ 169 (347)
T COG2089 160 EEIEEAVAIL 169 (347)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 119
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=32.77 E-value=1.8e+02 Score=26.32 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCCEEecCCC---------cC--CH-------HHHHHHHHHHHHcCCCCCCCceEEeeecCC----C
Q 020679 36 EVVKESVVHAIEVGYRHFDTAAI---------YQ--SE-------QPLGEAIAEALRLGLIKSRNELFITSKLWL----G 93 (323)
Q Consensus 36 ~~~~~~l~~A~~~Gin~~DTA~~---------Yg--sE-------~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~----~ 93 (323)
+...++|+.-.++||++|=.++. ++ -+ +.+|+.+++. .+-++..-+. .
T Consensus 45 ~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~----------~iRls~HP~qf~vLn 114 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKEN----------GIRLSMHPDQFTVLN 114 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHT----------T-EEEE---TT--TT
T ss_pred HHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHHc----------CCeEEecCCcceeCC
Confidence 45667788888999999976652 12 12 2345555443 3456655421 1
Q ss_pred CCChhhHHHHHH------HHHHHcCCCcc--cEEEeeCC
Q 020679 94 HAHRQLVLPALQ------TSLKNLGLEYI--DLYLIHFP 124 (323)
Q Consensus 94 ~~~~~~i~~~le------~SL~~Lg~d~i--Dl~~lH~p 124 (323)
.-.++.+.+++. +.|+.||.+.- ..+.||--
T Consensus 115 Sp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~G 153 (275)
T PF03851_consen 115 SPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVG 153 (275)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeC
Confidence 123556666655 45788998877 88899954
No 120
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=32.62 E-value=3.8e+02 Score=24.34 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCCC-CHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCC
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSNF-ACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGT 223 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~ 223 (323)
.+.....++.+++.|.--.+=++.. ....+..+++..+.. .+-...++ ..+++.++..+++||.+.. .|... .
T Consensus 172 ~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~--~i~H~~~l-~~~~~~~~~l~~~gi~v~~-~P~sn--~ 245 (325)
T cd01320 172 PEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAE--RIGHGIRA-IEDPELVKRLAERNIPLEV-CPTSN--V 245 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCc--ccchhhcc-CccHHHHHHHHHcCCeEEE-CCCcc--c
Confidence 5667777888888877554444332 234455555533322 11111111 1235688999999998764 45433 1
Q ss_pred CCCCCCccChHHHHHHHHHcCCCHHHHHHHHHHhCCcEEEeCCCCH-----HHHHHhhcccc-CcCCHHHHHHH
Q 020679 224 RWGTNRVMECQVLKEIANARGKSVAQVSLRWVYQQGVSLVVKSFNK-----ERMKENLDIFD-WELSAEELQKI 291 (323)
Q Consensus 224 l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~~~i~g~~~~-----~~l~enl~a~~-~~L~~e~~~~l 291 (323)
..+... ....--++..+..|+.+.+|+.++ .-.++...+.. ..|+.+++..+
T Consensus 246 ~l~~~~----------------~~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~~~~~~~l~~~el~~~ 303 (325)
T cd01320 246 QTGAVK----------------SLAEHPLRELLDAGVKVTINTDDPTVFGTYLTDEYELLAEAFGLTEEELKKL 303 (325)
T ss_pred cccccC----------------CcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 111100 011122556667777777776443 22222222222 35777776654
No 121
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=32.56 E-value=3.2e+02 Score=25.30 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=37.6
Q ss_pred CCChHHHHHHHHHHHHcCCCEE-----ecCCCcC-----CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHH
Q 020679 32 GAATEVVKESVVHAIEVGYRHF-----DTAAIYQ-----SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVL 101 (323)
Q Consensus 32 ~~~~~~~~~~l~~A~~~Gin~~-----DTA~~Yg-----sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~ 101 (323)
.+ .+++...|..+++.+...+ |.-+.|. +.+.+.+.+++. .|. + .+-.|++....+...-.
T Consensus 51 ~~-~~~~~~~~~~~~~~~~~~~~~~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~--~----~~KvKVg~~~~~~~~Di 121 (327)
T PRK02901 51 YD-PAEAAAWLASAIEAAYGGPPPPVRDRVPVNATVPAVDAAQVPEVLARF--PGC--R----TAKVKVAEPGQTLADDV 121 (327)
T ss_pred CC-HHHHHHHHHHHHHhhhccCCcccCCeEEeeEEeCCCCHHHHHHHHHHh--CCC--C----EEEEEECCCCCCHHHHH
Confidence 45 6778888888888766322 1111232 222333333321 132 1 24446654333445556
Q ss_pred HHHHHHHHHcCC
Q 020679 102 PALQTSLKNLGL 113 (323)
Q Consensus 102 ~~le~SL~~Lg~ 113 (323)
+.++..++.+|-
T Consensus 122 ~rv~avRe~lGp 133 (327)
T PRK02901 122 ARVNAVRDALGP 133 (327)
T ss_pred HHHHHHHHhcCC
Confidence 667777777764
No 122
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=32.50 E-value=1.5e+02 Score=24.65 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=39.8
Q ss_pred HHHHHHHHHHH-HcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHH
Q 020679 36 EVVKESVVHAI-EVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSL 108 (323)
Q Consensus 36 ~~~~~~l~~A~-~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL 108 (323)
+.....|...+ +.|++.....-.-..++.+-+++++.. .+.+++|+| .+......+...+++.+.+
T Consensus 18 d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~------~~~dlVItt-GG~G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 18 DTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS------ERADLVITT-GGLGPTHDDLTREAVAKAF 84 (170)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH------hCCCEEEEC-CCCCCCCCChHHHHHHHHh
Confidence 33344444444 789988765544446777888887652 467888888 4333223355666666554
No 123
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=32.10 E-value=3.3e+02 Score=23.38 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLE 114 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d 114 (323)
.++..+++..+++.|+.++|.--... .+.+....... . .+.++.++...+....+.+.+.+.+++.. .+|.|
T Consensus 74 ~~~~~~ll~~~~~~~~d~iDiE~~~~-~~~~~~~~~~~---~---~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~~gad 145 (224)
T PF01487_consen 74 EEEYLELLERAIRLGPDYIDIELDLF-PDDLKSRLAAR---K---GGTKIILSYHDFEKTPSWEELIELLEEMQ-ELGAD 145 (224)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEGGCC-HHHHHHHHHHH---H---TTSEEEEEEEESS---THHHHHHHHHHHH-HTT-S
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcccc-hhHHHHHHHHh---h---CCCeEEEEeccCCCCCCHHHHHHHHHHHH-hcCCC
Confidence 68889999999999999999865522 22222221111 1 45667777765444444455666665555 67776
Q ss_pred cccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHH
Q 020679 115 YIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERL 177 (323)
Q Consensus 115 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~ 177 (323)
.+=+...... ..+...+++...++++.-.+.-|+++.=....+.++
T Consensus 146 ivKia~~~~~-----------------~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi 191 (224)
T PF01487_consen 146 IVKIAVMANS-----------------PEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRI 191 (224)
T ss_dssp EEEEEEE-SS-----------------HHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHH
T ss_pred eEEEEeccCC-----------------HHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHH
Confidence 6555544422 112445566666666543444444443333333333
No 124
>PTZ00081 enolase; Provisional
Probab=31.58 E-value=4.9e+02 Score=25.28 Aligned_cols=97 Identities=10% Similarity=0.111 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcC--CccEEEcC--CCC
Q 020679 95 AHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLG--LTKSIGVS--NFA 170 (323)
Q Consensus 95 ~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G--~Ir~iGvs--~~~ 170 (323)
.+++.+.+-+.+.++.+ +++++-.|.. ++-|+.+.+|.+.= .+.-+|=- ..+
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~-------------------~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn 336 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFD-------------------QDDWEAYAKLTAAIGQKVQIVGDDLLVTN 336 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCC-------------------cccHHHHHHHHHhhCCCceEEcCCcccCC
Confidence 45666666666666655 4677777642 23456666666653 56555542 345
Q ss_pred HHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEecc
Q 020679 171 CKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~ 217 (323)
...+.++++....+ ++|+..|-. .+-.++...|+++|+.++....
T Consensus 337 ~~~l~~~I~~~aad--~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iishr 384 (439)
T PTZ00081 337 PTRIKKAIEKKACN--ALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHR 384 (439)
T ss_pred HHHHHHHHHhCCCC--EEEeccccccCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 88899988876544 556555542 2346789999999999887433
No 125
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.38 E-value=2.2e+02 Score=28.35 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHc-CCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccC
Q 020679 145 YEAVWEAMEECQNL-GLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 145 ~~~~~~~L~~l~~~-G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l 218 (323)
..+++++|..+++. ++|..||+.+.. ..++.+.+..+++ +.+..++-...-...+..+++.|+.++.-..+
T Consensus 83 ~~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~~~--i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~~ 154 (526)
T TIGR02329 83 GFDVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFNLD--IVQRSYVTEEDARSCVNDLRARGIGAVVGAGL 154 (526)
T ss_pred hhhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCCc--eEEEEecCHHHHHHHHHHHHHCCCCEEECChH
Confidence 45788888888775 788899998865 3444444444454 44445544333467888899999999884443
No 126
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=31.31 E-value=2.5e+02 Score=21.79 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=46.0
Q ss_pred CCCceEEeeecCCCCCChhhHHHHHHHHHHHcCC---CcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 020679 80 SRNELFITSKLWLGHAHRQLVLPALQTSLKNLGL---EYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQ 156 (323)
Q Consensus 80 ~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 156 (323)
+|=.+.|+-|++.....+..+++.+.+.++.+.. ...|++++-.+... ..+..++.+.|..|.
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~--------------~~~~~~l~~~l~~ll 112 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAA--------------ECNYEQFLQELEQLL 112 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcc--------------cCCHHHHHHHHHHHH
Confidence 4544666667665566678888888888887643 35799999987543 245788888888876
Q ss_pred Hc
Q 020679 157 NL 158 (323)
Q Consensus 157 ~~ 158 (323)
+.
T Consensus 113 ~k 114 (122)
T PRK03031 113 IQ 114 (122)
T ss_pred HH
Confidence 65
No 127
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=31.27 E-value=3e+02 Score=22.67 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhh-------hHHHHHHHHHhCceEEEecc
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQ-------QKKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-------~~~ll~~~~~~gi~via~~~ 217 (323)
.+++++..-+=-++.-|++|=|.+-+......+++....+..++-+.++.-.. +.++-+..+++|..++.-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 56777766666667778999887766555555555443322232223332221 26888999999999988654
Q ss_pred CCCCCCCCCCCCccChHHHHHHHHHcC-CCHHHH---HHHHHHhCC
Q 020679 218 LGAKGTRWGTNRVMECQVLKEIANARG-KSVAQV---SLRWVYQQG 259 (323)
Q Consensus 218 l~~~G~l~~~~~~~~~~~l~~ia~~~~-~s~~q~---al~~~l~~~ 259 (323)
.-+ |. -+.|.+++| .+|.++ .|| ..++|
T Consensus 92 alS-g~------------eRsis~kfGG~~p~eiiAetLR-~fg~G 123 (186)
T COG1751 92 ALS-GV------------ERSISRKFGGYSPLEIIAETLR-MFGQG 123 (186)
T ss_pred hhh-cc------------hhhhhhhcCCcchHHHHHHHHH-HhcCC
Confidence 433 32 244555653 566665 355 55666
No 128
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=31.18 E-value=2.4e+02 Score=26.72 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhh-h-HHHHHHHHHhCceEEEeccCCCCCCC
Q 020679 147 AVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQ-Q-KKLRVFCEKKGIHITAYSPLGAKGTR 224 (323)
Q Consensus 147 ~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~-~~ll~~~~~~gi~via~~~l~~~G~l 224 (323)
+-.+++.+|.+.|.+.+|-.---.-..+..+.....-+|. -.|..... + +.+++.|+++||.+|..+- | +
T Consensus 10 D~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~NaG----g-~ 81 (362)
T PF07287_consen 10 DRPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNAG----G-L 81 (362)
T ss_pred CcHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeCC----C-C
Confidence 3457778888899999997643321112111111111111 12333222 2 6789999999999998531 1 1
Q ss_pred CCCCCccChHHHHHHHHHcCCC
Q 020679 225 WGTNRVMECQVLKEIANARGKS 246 (323)
Q Consensus 225 ~~~~~~~~~~~l~~ia~~~~~s 246 (323)
.+.-..+.++++++++|.+
T Consensus 82 ---np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 ---NPAGCADIVREIARELGLS 100 (362)
T ss_pred ---CHHHHHHHHHHHHHhcCCC
Confidence 1112346677777777654
No 129
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=31.13 E-value=1e+02 Score=23.92 Aligned_cols=39 Identities=15% Similarity=-0.113 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcC-CHHHHHHHHHHHH
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQ-SEQPLGEAIAEAL 73 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~vG~~l~~~~ 73 (323)
.+.-..++...++.|.+.-+.|..|| +...|..|.+++.
T Consensus 15 ~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~ 54 (121)
T PRK09413 15 TQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQ 54 (121)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 56667788888999999999999999 9999999999873
No 130
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=31.03 E-value=4.3e+02 Score=24.42 Aligned_cols=166 Identities=17% Similarity=0.139 Sum_probs=83.9
Q ss_pred CCCCceeeCCCCCccCccc--cccc-ccCCCCChHHHHHHHHHHHHcCCCEEecCCCc-CC--HHHHHHHHHHHHHcCCC
Q 020679 5 VSIPEAPLGSTGKTIPLVG--FGTA-QFPFGAATEVVKESVVHAIEVGYRHFDTAAIY-QS--EQPLGEAIAEALRLGLI 78 (323)
Q Consensus 5 ~~m~~~~lg~tg~~vs~lg--lG~~-~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Y-gs--E~~vG~~l~~~~~~g~~ 78 (323)
.+++...+.. ++.+..|. |... .|.... -.++.+++...++.+-+.|= .| |+ -.-++..++.+++.|.
T Consensus 9 ~~V~~~~~~~-~~~~~~lv~~~~~~~gF~a~~-l~~A~~i~~~ml~d~~~ifL---~~tg~mvs~Glr~ii~~Li~~~~- 82 (312)
T PRK01221 9 EPVEDIRLDD-LTSISDLIEVYRKIGGFMAGH-IVRASEILKEMISDADLRFL---SFTANLVSTGLRGLIADLIKRGL- 82 (312)
T ss_pred CCCCCCCCCC-CCCHHHHHHHhhccCCcchHH-HHHHHHHHHHHHcCCCeEEE---EecchhHHHHHHHHHHHHHHcCC-
Confidence 3455555554 66776653 2222 332222 46778888888855544332 12 21 2336777777766553
Q ss_pred CCCCceEEeeecCCCCCChhhHHHHH------------HHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHH
Q 020679 79 KSRNELFITSKLWLGHAHRQLVLPAL------------QTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYE 146 (323)
Q Consensus 79 ~~R~~~~i~tK~~~~~~~~~~i~~~l------------e~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
=+++|+|=... .+.+.+++ +.-|++.|+++|-=+++..-+.. ..++
T Consensus 83 ---VD~iVtTgani----~hD~~~~lg~~~y~G~~~~dd~~Lr~~GinRIgdv~ip~e~y~---------------~~~E 140 (312)
T PRK01221 83 ---FNVVITTCGTL----DHDIARSFGGVYYKGSFDIDDAMLKDLGIHRLGNVLIPVESYG---------------PLIE 140 (312)
T ss_pred ---eeEEEeCCCch----HHHHHHHcCCCeEecCCCCChHHHHHcCCCcceeeccChHHHH---------------HHHH
Confidence 24566665321 11222222 56677777777655554421100 1133
Q ss_pred HHH-HHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccC
Q 020679 147 AVW-EAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 147 ~~~-~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l 218 (323)
+.+ +.++++.+++ ..|++.++...+-. .+ +.+..++.+|.+++|+|+.-...
T Consensus 141 ~~i~~il~~~~~~~-------~~~s~~e~i~~lGk-~i------------~~e~Sil~~Ay~~~VPVf~Pa~~ 193 (312)
T PRK01221 141 KFVRKFLEELYKDK-------KEWSTYELLWEFGK-RI------------NDENSILRAAYEKGVPVFVPGIV 193 (312)
T ss_pred HHHHHHHHHHHhcC-------CCccHHHHHHHHHh-hc------------CCcCcHHHHHHHcCCCEECCCcc
Confidence 333 2344444433 12455554332211 01 12468999999999999985444
No 131
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=30.94 E-value=4.5e+02 Score=24.62 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHc---CCCEEecCCCcCC-HHHHHHHHHHHHHcCCCCCCCceEEeeecC--CCCCChhhHHHHHHHHH
Q 020679 35 TEVVKESVVHAIEV---GYRHFDTAAIYQS-EQPLGEAIAEALRLGLIKSRNELFITSKLW--LGHAHRQLVLPALQTSL 108 (323)
Q Consensus 35 ~~~~~~~l~~A~~~---Gin~~DTA~~Ygs-E~~vG~~l~~~~~~g~~~~R~~~~i~tK~~--~~~~~~~~i~~~le~SL 108 (323)
.++..+++....+. =+-++|..+..++ .+.+-+.+ + ..+-++|.+|+- +.....+.+.+.+.+-+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~------~---~~piilV~NK~DLl~k~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV------G---GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh------C---CCCEEEEEEchhhCCCCCCHHHHHHHHHHHH
Confidence 45666665555432 2335676554442 11111221 1 456688999983 23333455666666667
Q ss_pred HHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHH
Q 020679 109 KNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERL 177 (323)
Q Consensus 109 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~ 177 (323)
+.+|....+++.+..-.. ...+++++.+.++.+.+.|-.+|.+|..-..+-..
T Consensus 121 k~~g~~~~~i~~vSAk~g----------------~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKG----------------NGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred HHcCCCcCcEEEecCCCC----------------CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 777765446665543221 23788888888887777899999999886554433
No 132
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=30.86 E-value=58 Score=23.69 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHH
Q 020679 98 QLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERL 177 (323)
Q Consensus 98 ~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~ 177 (323)
+++-...++-.+.||....||..+..-.+.+ ..+.+.+.|...++.- | ..-+...+.++
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~---------------l~eQv~~mL~~W~~r~-----G-~~ATv~~L~~a 68 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKENHPHN---------------VQSQIVEALVKWRQRF-----G-KKATVQSLIQS 68 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhc-----C-CCCcHHHHHHH
Confidence 3445567788899999999998876532211 2467888888888862 2 35567889999
Q ss_pred HHhCCCCceeecc
Q 020679 178 LATAKIPPAVNQV 190 (323)
Q Consensus 178 ~~~~~~~~~~~q~ 190 (323)
+..+++++.+.|+
T Consensus 69 L~~~~~~~~~~~~ 81 (83)
T cd08319 69 LKAVEVDPSVLQF 81 (83)
T ss_pred HHHcCCCHHHHHh
Confidence 8988888776653
No 133
>PLN02775 Probable dihydrodipicolinate reductase
Probab=30.60 E-value=4e+02 Score=24.28 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=52.5
Q ss_pred HHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCC
Q 020679 104 LQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 183 (323)
Q Consensus 104 le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~ 183 (323)
++..|..+.-++.|++++..- ..+.+.+.++.+.+.|+---+|.+.|+.++++++.+...+
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT-------------------~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i 128 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT-------------------LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGV 128 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC-------------------ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCc
Confidence 556665555568898888753 2578889999999999999999999999999887664344
Q ss_pred CceeecccCCh
Q 020679 184 PPAVNQVELNP 194 (323)
Q Consensus 184 ~~~~~q~~~~~ 194 (323)
+.++--++++
T Consensus 129 -~vv~apNfSi 138 (286)
T PLN02775 129 -YAVIAPQMGK 138 (286)
T ss_pred -cEEEECcccH
Confidence 3444445554
No 134
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=30.52 E-value=5.1e+02 Score=25.11 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=24.6
Q ss_pred CCCCCChhhHHHHHHHHHHHcCCCcccEEEeeC
Q 020679 91 WLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHF 123 (323)
Q Consensus 91 ~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~ 123 (323)
+.+..+.+.+.+.++..++ |+.+++++|.+.-
T Consensus 223 GlPgqT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 223 GLPGQTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred eCCCCCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 4556677888888777665 9999999998763
No 135
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.51 E-value=1.2e+02 Score=26.09 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCccEEEcCCC-CHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEE
Q 020679 147 AVWEAMEECQNLGLTKSIGVSNF-ACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITA 214 (323)
Q Consensus 147 ~~~~~L~~l~~~G~Ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 214 (323)
+..+.+++++++..=-.||..+. +.++++++++.+- ++.+ +|. -+.+++++|+++||.+++
T Consensus 41 ~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~Fiv-----SP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 41 AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFIV-----SPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEEE-----CCC-CCHHHHHHHHHcCCCEeC
Confidence 35566666665533346888775 5788888887653 2212 221 146899999999999986
No 136
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=30.15 E-value=4.8e+02 Score=25.27 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHc----CCccEEEcCC-----CCHHHHHHHHHhCC----CCc-eeecccCChhhhhHHHHHHHHHhCce
Q 020679 146 EAVWEAMEECQNL----GLTKSIGVSN-----FACKKLERLLATAK----IPP-AVNQVELNPVWQQKKLRVFCEKKGIH 211 (323)
Q Consensus 146 ~~~~~~L~~l~~~----G~Ir~iGvs~-----~~~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~ll~~~~~~gi~ 211 (323)
+.+.+.++...+. ..|..|-+.. .+.+++.++++... +.. .-+-++.|+..-..+.+..+++.|+.
T Consensus 85 ~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~ 164 (453)
T PRK13347 85 AALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFN 164 (453)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCC
Confidence 3444555543332 2455554432 34677777765432 111 12233445544457899999999988
Q ss_pred EEEeccCC
Q 020679 212 ITAYSPLG 219 (323)
Q Consensus 212 via~~~l~ 219 (323)
-+..+.-+
T Consensus 165 rvsiGvQS 172 (453)
T PRK13347 165 RASFGVQD 172 (453)
T ss_pred EEEECCCC
Confidence 88766554
No 137
>PRK07945 hypothetical protein; Provisional
Probab=29.85 E-value=4.6e+02 Score=24.36 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcC--------CHHHHHHHHHHH--HHcCCCCCCC-ceEEeeecCC-CCCChhhHHH
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQ--------SEQPLGEAIAEA--LRLGLIKSRN-ELFITSKLWL-GHAHRQLVLP 102 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~Yg--------sE~~vG~~l~~~--~~~g~~~~R~-~~~i~tK~~~-~~~~~~~i~~ 102 (323)
.....+.+..|.+.|+..+=.+++.. +.+-+-..++.. ++.. -++ ++++.--+.. .+.+.+
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~k---y~~I~Il~GiE~d~~~~g~~~---- 182 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEE---LAPFRILTGIEVDILDDGSLD---- 182 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHh---cCCceEEEEeEecccCCCCcc----
Confidence 34578999999999999885555532 222222222221 1111 122 2333333321 122122
Q ss_pred HHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcC
Q 020679 103 ALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVS 167 (323)
Q Consensus 103 ~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs 167 (323)
..++.|+. .||+ +.-+|+... .+.....+.|.++.+.+.+..+|=-
T Consensus 183 ~~~~~l~~--~D~v-IgSvH~~~~----------------~~~~~~~~~l~~ai~~~~~dvlgH~ 228 (335)
T PRK07945 183 QEPELLDR--LDVV-VASVHSKLR----------------MDAAAMTRRMLAAVANPHTDVLGHC 228 (335)
T ss_pred hhHHHHHh--CCEE-EEEeecCCC----------------CCHHHHHHHHHHHhcCCCCeEEecC
Confidence 22333443 4555 567787532 1245567888888888888888854
No 138
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=29.82 E-value=39 Score=31.15 Aligned_cols=105 Identities=20% Similarity=0.329 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHHHHHH-HHhCC----cEEEeCCCCHHHHH
Q 020679 199 KKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQVSLRW-VYQQG----VSLVVKSFNKERMK 273 (323)
Q Consensus 199 ~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~-~l~~~----~~~i~g~~~~~~l~ 273 (323)
-+++++|..||+.+++ ..|. +...++.++ .+..|+.. ...|-.-+.|- +..+| ..++++...|+-=+
T Consensus 180 VdLL~y~~~~~l~Vis--s~Ga-aaksDPTrv----~v~Dis~t-~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ekpdprk 251 (430)
T KOG2018|consen 180 VDLLEYCYNHGLKVIS--STGA-AAKSDPTRV----NVADISET-EEDPLSRSVRRRLRKRGIEGGIPVVFSLEKPDPRK 251 (430)
T ss_pred hHHHHHHHHcCCceEe--ccCc-cccCCCcee----ehhhcccc-ccCcHHHHHHHHHHHhccccCCceEEecCCCCccc
Confidence 5899999999999997 4544 333332211 01111111 12222223332 22334 56777776664323
Q ss_pred HhhccccCcCCHHHH-----HHHhccCCCCCCcccccccCCCCCCcc
Q 020679 274 ENLDIFDWELSAEEL-----QKIEQIPQYRGSRAEVHVSEDGPYKSL 315 (323)
Q Consensus 274 enl~a~~~~L~~e~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~ 315 (323)
+-+ .||.+++. .++.++.+..-..=+....|||-|+.-
T Consensus 252 a~l----Lp~~d~e~erg~~delsav~dfrvRilPvlGtmP~iFGlt 294 (430)
T KOG2018|consen 252 AKL----LPLEDEEGERGNVDELSAVPDFRVRILPVLGTMPGIFGLT 294 (430)
T ss_pred ccc----CCCCccccccCChhhhhhccchhhhhcccccCcchHHHHH
Confidence 222 25555544 345555544333356677777766543
No 139
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=29.75 E-value=1.8e+02 Score=23.51 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=39.1
Q ss_pred cEEEcCCCCH--HHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 162 KSIGVSNFAC--KKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 162 r~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
--+|...|+. ..+..+++.+.+. ++-.. .+...++.+..|-++++.++.-|.+.+
T Consensus 18 ak~GlDgHd~gakvia~~l~d~Gfe--Vi~~g--~~~tp~e~v~aA~~~dv~vIgvSsl~g 74 (143)
T COG2185 18 AKLGLDGHDRGAKVIARALADAGFE--VINLG--LFQTPEEAVRAAVEEDVDVIGVSSLDG 74 (143)
T ss_pred eccCccccccchHHHHHHHHhCCce--EEecC--CcCCHHHHHHHHHhcCCCEEEEEeccc
Confidence 3458888874 5577788877755 44222 222347889999999999999999986
No 140
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=29.57 E-value=3e+02 Score=23.47 Aligned_cols=67 Identities=19% Similarity=0.134 Sum_probs=43.6
Q ss_pred HHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccC---ChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 151 AMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVEL---NPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 151 ~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~---~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
...+|++.|-. .+-+.-.+.+.+.++++.. +.++.-+.. .-......+++.|++.||..+.++.++.
T Consensus 36 ~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~--d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 36 RAQQLQALGAE-VVEADYDDPESLVAALKGV--DAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHHHTTTE-EEES-TT-HHHHHHHHTTC--SEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred hhhhhhcccce-EeecccCCHHHHHHHHcCC--ceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence 35556667774 5666666778888888743 334444442 2233457899999999999999999976
No 141
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=29.57 E-value=5.1e+02 Score=24.83 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcC-------CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHH
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQ-------SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTS 107 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~Yg-------sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~S 107 (323)
..++.+.+..|++.|- ...|+ +-+.|.+.+.+.+. +.+ ..+++|+++=+ .+++|-.
T Consensus 80 s~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~-~kl-~a~DV~ltsGC----------~qAIe~~ 142 (447)
T KOG0259|consen 80 SQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLP-NKL-TADDVVLTSGC----------SQAIELA 142 (447)
T ss_pred CHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCC-Ccc-CcCceEEeccc----------hHHHHHH
Confidence 5778888888998884 56776 35566666543322 222 67888887654 2334444
Q ss_pred HHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCC---C--CHHHHHHHHHhCC
Q 020679 108 LKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSN---F--ACKKLERLLATAK 182 (323)
Q Consensus 108 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~---~--~~~~l~~~~~~~~ 182 (323)
+.-|-.-.-.+ +|-+|... ..++......| -||++-+-. | +.++++.+++.-.
T Consensus 143 i~~LA~p~aNI-LlPrPGfp-----------------~Y~~~a~~~~l----EVR~ydlLPe~~weIDL~~veal~DENT 200 (447)
T KOG0259|consen 143 ISSLANPGANI-LLPRPGFP-----------------LYDTRAIYSGL----EVRYYDLLPEKDWEIDLDGVEALADENT 200 (447)
T ss_pred HHHhcCCCCce-ecCCCCCc-----------------hHHHhhhhcCc----eeEeecccCcccceechHHHHHhhccCe
Confidence 44443233333 44555321 22222111111 234444322 1 2345555555433
Q ss_pred CCceeecccCChhh----hh--HHHHHHHHHhCceEEEeccC
Q 020679 183 IPPAVNQVELNPVW----QQ--KKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 183 ~~~~~~q~~~~~~~----~~--~~ll~~~~~~gi~via~~~l 218 (323)
.. .++-.+-|+.- .+ +++.+.|+++||.||+-..+
T Consensus 201 ~A-ivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY 241 (447)
T KOG0259|consen 201 VA-IVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVY 241 (447)
T ss_pred eE-EEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhc
Confidence 22 12223444432 12 78899999999999886555
No 142
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=29.31 E-value=4e+02 Score=23.51 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCC--ceEEeeecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCC
Q 020679 62 EQPLGEAIAEALRLGLIKSRN--ELFITSKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKED 139 (323)
Q Consensus 62 E~~vG~~l~~~~~~g~~~~R~--~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 139 (323)
..++.++++.... .+. .+.++..+.+.......+...+.+.+++.+.+.- -+.+--.....
T Consensus 69 ~~v~~~a~~~~~~-----~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~----------- 131 (256)
T COG2200 69 RWVLEEACRQLRT-----WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH-RLVLEITESAL----------- 131 (256)
T ss_pred HHHHHHHHHHHHh-----hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchh-----------
Confidence 4455666665421 122 3677777755444445677788888888876543 22222111100
Q ss_pred CCCCcHHHHHHHHHHHHHcCCccEEEcCCCCH--HHHHHHHHhCCCCceeecccC--------Chhhhh--HHHHHHHHH
Q 020679 140 IVPLDYEAVWEAMEECQNLGLTKSIGVSNFAC--KKLERLLATAKIPPAVNQVEL--------NPVWQQ--KKLRVFCEK 207 (323)
Q Consensus 140 ~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~--------~~~~~~--~~ll~~~~~ 207 (323)
......+...+..|++.|- .|.+..|.. ..+..+.+ ++++++-+.- +..... +.++..|++
T Consensus 132 --~~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~ 204 (256)
T COG2200 132 --IDDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHK 204 (256)
T ss_pred --hcCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHH
Confidence 0124467889999999994 566666542 33444433 2233332221 211111 678999999
Q ss_pred hCceEEEeccC
Q 020679 208 KGIHITAYSPL 218 (323)
Q Consensus 208 ~gi~via~~~l 218 (323)
.|+.+++-+.=
T Consensus 205 l~~~vvaEGVE 215 (256)
T COG2200 205 LGLTVVAEGVE 215 (256)
T ss_pred CCCEEEEeecC
Confidence 99999985444
No 143
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.29 E-value=4.8e+02 Score=24.42 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHc-CCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCC-CcccEEEeeCCCCCCCCCCCCCCCC
Q 020679 61 SEQPLGEAIAEALRL-GLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGL-EYIDLYLIHFPGSLKPGTGFPFNKE 138 (323)
Q Consensus 61 sE~~vG~~l~~~~~~-g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~-d~iDl~~lH~p~~~~~~~~~~~~~~ 138 (323)
+-+.|-++++..-.. |+ ..-.+.|+|= + ..+.+++-.+.-+++|+. +....+-||.++......-.|..
T Consensus 163 n~~~v~~~i~~l~~~~~i--~~r~itvST~-G----~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~-- 233 (345)
T PRK14457 163 NIDEVLAAIRCLNQDLGI--GQRRITVSTV-G----VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSA-- 233 (345)
T ss_pred CHHHHHHHHHHHhcccCC--ccCceEEECC-C----chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCc--
Confidence 556666777764221 33 2335667772 2 123344444443444432 33467889988753322111110
Q ss_pred CCCCCcHHHHHHHHHH-HHHcCC---ccEEEcCCC--CHHHHHHHHHhC-CCCceeecccCChhhhh----------HHH
Q 020679 139 DIVPLDYEAVWEAMEE-CQNLGL---TKSIGVSNF--ACKKLERLLATA-KIPPAVNQVELNPVWQQ----------KKL 201 (323)
Q Consensus 139 ~~~~~~~~~~~~~L~~-l~~~G~---Ir~iGvs~~--~~~~l~~~~~~~-~~~~~~~q~~~~~~~~~----------~~l 201 (323)
....++++++++.+ +.+.|+ |+++=+.++ +.+.++++.+.. .++..++-++||+.... ..+
T Consensus 234 --~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f 311 (345)
T PRK14457 234 --KNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAF 311 (345)
T ss_pred --cCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHH
Confidence 11247788877766 455563 355555443 345655555433 23455777888876321 345
Q ss_pred HHHHHHhCceEEEeccCCC
Q 020679 202 RVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 202 l~~~~~~gi~via~~~l~~ 220 (323)
.+..+++|+.+......|.
T Consensus 312 ~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 312 QRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHHCCCeEEEeCCCCC
Confidence 6667788999888777754
No 144
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=29.24 E-value=5.4e+02 Score=25.02 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=59.3
Q ss_pred CCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcC-CCcccEEEeeCCCCCCCCCCCCC
Q 020679 57 AIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLG-LEYIDLYLIHFPGSLKPGTGFPF 135 (323)
Q Consensus 57 ~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~ 135 (323)
-.||.++.|-++|++..+.- +.+-++|.|-+-.. .-.+.+..-+++.-++.. ..-+.++.++.|+....-
T Consensus 72 ~VfGg~~~L~~aI~~~~~~~---~P~~I~V~ttC~~e-iIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~----- 142 (455)
T PRK14476 72 TILGGDENVEEAILNICKKA---KPKIIGLCTTGLTE-TRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGAL----- 142 (455)
T ss_pred eEeCCHHHHHHHHHHHHHhh---CCCEEEEeCcchHh-hhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcH-----
Confidence 46788888888888765432 44556677665221 111222222222222221 113578888888653210
Q ss_pred CCCCCCCCcHHHHHHHHHH-HH--------HcCCccEEEcCCC---CHHHHHHHHHhCCCCc
Q 020679 136 NKEDIVPLDYEAVWEAMEE-CQ--------NLGLTKSIGVSNF---ACKKLERLLATAKIPP 185 (323)
Q Consensus 136 ~~~~~~~~~~~~~~~~L~~-l~--------~~G~Ir~iGvs~~---~~~~l~~~~~~~~~~~ 185 (323)
....+.+++++.+ +. ++++|.-||-+++ +.+.++++++..++.+
T Consensus 143 ------~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 143 ------EDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred ------HHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 0112333333332 21 3467888875543 4567778887777664
No 145
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=29.11 E-value=4e+02 Score=23.46 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCccEEEcCCC-CHHHHHHHHHhCCCCceeec-ccCChhhhhHHHHHHHHHhCceE
Q 020679 149 WEAMEECQNLGLTKSIGVSNF-ACKKLERLLATAKIPPAVNQ-VELNPVWQQKKLRVFCEKKGIHI 212 (323)
Q Consensus 149 ~~~L~~l~~~G~Ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q-~~~~~~~~~~~ll~~~~~~gi~v 212 (323)
++.+.++++.-.+.-|+.... +.+.+.+++..+..+.++.- .-+..-..-.++...|+++|+.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 344555555556666666554 46788888877655543331 11111112368889999998864
No 146
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.10 E-value=1.5e+02 Score=25.59 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCccEEEcCCC-CHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEE
Q 020679 147 AVWEAMEECQNLGLTKSIGVSNF-ACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITA 214 (323)
Q Consensus 147 ~~~~~L~~l~~~G~Ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 214 (323)
...+.+++++++..=-.||..+. +.++.+++++.+- + +. .+|.. ..+++++|+++|+.+++
T Consensus 45 ~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~--Fi---vsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 45 VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-Q--FI---VSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-C--EE---ECCCC-CHHHHHHHHHcCCcEEC
Confidence 45566666666543356888775 5788888887653 2 22 12211 46999999999999987
No 147
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=28.94 E-value=5.1e+02 Score=27.53 Aligned_cols=148 Identities=19% Similarity=0.166 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLE 114 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d 114 (323)
.+.+.++++.|.|.|+..+- .|..|.-.. .-+ . +-|+-|...+...+ -...-++++..+--+..
T Consensus 16 gEIAIRvFRAa~ELgi~TVA---Iys~ED~~S-~HR-~-------KADEsY~iG~~~~P----i~aYL~IdeII~iAk~~ 79 (1149)
T COG1038 16 GEIAIRVFRAANELGIKTVA---IYSEEDRLS-LHR-F-------KADESYLIGEGKGP----VEAYLSIDEIIRIAKRS 79 (1149)
T ss_pred chhhHHHHHHHHhcCceEEE---Eeeccccch-hhh-c-------cccceeeecCCCCc----hHHhccHHHHHHHHHHc
Confidence 47789999999999998773 775444321 111 1 45555665554322 22222333333332223
Q ss_pred cccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHH------HHHHHhCCCCceee
Q 020679 115 YIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKL------ERLLATAKIPPAVN 188 (323)
Q Consensus 115 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l------~~~~~~~~~~~~~~ 188 (323)
-.|. +| |..- -+.+-.+.-+++.++| |.+||=+....+.+ +.+...++++ ++
T Consensus 80 gaDa--Ih-PGYG----------------fLSEn~efA~~c~eaG-I~FIGP~~e~ld~~GdKv~Ar~~A~~agvP--vi 137 (1149)
T COG1038 80 GADA--IH-PGYG----------------FLSENPEFARACAEAG-ITFIGPKPEVLDMLGDKVKARNAAIKAGVP--VI 137 (1149)
T ss_pred CCCe--ec-CCcc----------------cccCCHHHHHHHHHcC-CEEeCCCHHHHHHhccHHHHHHHHHHcCCC--cc
Confidence 3454 66 3210 1234456667777777 56888664322221 1222233443 33
Q ss_pred cccCChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 189 QVELNPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 189 q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
.-.-.+...-+++.+++++.|-.++....+++
T Consensus 138 pgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GG 169 (1149)
T COG1038 138 PGTDGPIETIEEALEFAEEYGYPVMIKAAAGG 169 (1149)
T ss_pred CCCCCCcccHHHHHHHHHhcCCcEEEEEccCC
Confidence 22222222237899999999999999999987
No 148
>PRK06740 histidinol-phosphatase; Validated
Probab=28.87 E-value=4.7e+02 Score=24.22 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAI 58 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~ 58 (323)
.....+.+..|++.|+..|=-+++
T Consensus 60 ~~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 60 TKWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred cchHHHHHHHHHHCCCcEEEECCC
Confidence 456889999999999998744444
No 149
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.53 E-value=2.9e+02 Score=26.20 Aligned_cols=68 Identities=9% Similarity=0.085 Sum_probs=43.8
Q ss_pred HHHHHHHHHHc------CCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEecc
Q 020679 148 VWEAMEECQNL------GLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 148 ~~~~L~~l~~~------G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~ 217 (323)
-++.+.++++. +.=-..|=|.++...+.++++....+ ++|...+-. .+-.++.++|+.+|+.++..+.
T Consensus 244 ~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~d--iv~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 244 QIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAH--MVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCC--EEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 35666666655 23234456666777888877765544 666665542 2336788888888888888654
No 150
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=28.31 E-value=2e+02 Score=27.45 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCc---cEEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEe
Q 020679 147 AVWEAMEECQNLGLT---KSIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAY 215 (323)
Q Consensus 147 ~~~~~L~~l~~~G~I---r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~ 215 (323)
+-++.+.+|++.-.+ -.-|-+.++...+.++++....+ ++|....-. ..-..+.+.|+.+|+.++.+
T Consensus 246 ~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~D--ivq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 246 DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCID--IIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCC--EEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 346677777776442 12366777888888888865544 777665443 22367888888999887654
No 151
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.30 E-value=2.4e+02 Score=26.24 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCc-cEEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEE
Q 020679 149 WEAMEECQNLGLT-KSIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHIT 213 (323)
Q Consensus 149 ~~~L~~l~~~G~I-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~vi 213 (323)
++.+.+|++.--| -+.|=+.++..++..+++...++ ++|...+.. .+-.++.++|+++|+.++
T Consensus 226 ~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d--~i~~~~~~~GGit~~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 226 YEGHARIASALRTPVQMGENWLGPEEMFKALSAGACD--LVMPDLMKIGGVTGWLRASALAEQAGIPMS 292 (355)
T ss_pred HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCC--eEecCHhhhCCHHHHHHHHHHHHHcCCeec
Confidence 4455555555333 23444455666666666554433 555444332 112456777777777764
No 152
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=28.24 E-value=2.3e+02 Score=20.48 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEec
Q 020679 147 AVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 147 ~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~ 216 (323)
.+.+.|...++.|+ -.+|+ .+..+.+........+.--+.++.....-+..+|++++|.++-..
T Consensus 2 ~i~~~l~~a~~~~~-lv~G~-----~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 2 KIYKLLKLARKAGR-LVKGI-----KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHHHHSE-EEESH-----HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHHhcCC-EEEch-----HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 34566677777777 45555 567777777777777776666654433448889999999997643
No 153
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=28.07 E-value=2.7e+02 Score=23.15 Aligned_cols=93 Identities=9% Similarity=-0.062 Sum_probs=50.4
Q ss_pred HHHcCCccEEEcCCCCHHHH----HHHHHhCCCCceeecccCChhhh---------h-HHHHHHHHHhCceEEEecc-CC
Q 020679 155 CQNLGLTKSIGVSNFACKKL----ERLLATAKIPPAVNQVELNPVWQ---------Q-KKLRVFCEKKGIHITAYSP-LG 219 (323)
Q Consensus 155 l~~~G~Ir~iGvs~~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~---------~-~~ll~~~~~~gi~via~~~-l~ 219 (323)
+.....|..-|+++.+...+ .+.+.....+.+++++..|-..+ . +.+++.++++++.++...+ +.
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P 119 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLP 119 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 34456688999999886543 33333334455667766665422 1 5688889988877665432 21
Q ss_pred CCCCCCCCCCccChHHHHHHHHHcCCCHHH
Q 020679 220 AKGTRWGTNRVMECQVLKEIANARGKSVAQ 249 (323)
Q Consensus 220 ~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q 249 (323)
. .........-.+.++++|+++++....
T Consensus 120 ~--~~~~~~~~~~~~~~~~~a~~~~v~~id 147 (191)
T PRK10528 120 A--NYGRRYNEAFSAIYPKLAKEFDIPLLP 147 (191)
T ss_pred C--cccHHHHHHHHHHHHHHHHHhCCCccH
Confidence 1 000000000123466677777765443
No 154
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=28.05 E-value=2.8e+02 Score=24.49 Aligned_cols=112 Identities=18% Similarity=0.121 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcCCHHHHH-----------------HHHHHHHHcCCCCCCCceEEeeecCCCCCCh
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQSEQPLG-----------------EAIAEALRLGLIKSRNELFITSKLWLGHAHR 97 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG-----------------~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~ 97 (323)
.++..++.+++-+.||.+|=|.-.-.+-+.+- ..|+.. +. ....++|+|=. .+-
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~-A~----tgkPvIlSTG~----stl 125 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYI-AK----TGKPVILSTGM----STL 125 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHH-HT----T-S-EEEE-TT------H
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHH-HH----hCCcEEEECCC----CCH
Confidence 78899999999999999996654321111110 011111 11 22336666543 233
Q ss_pred hhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHH
Q 020679 98 QLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACK 172 (323)
Q Consensus 98 ~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~ 172 (323)
+.|.++++...+.- .-++.++|+...+ |...++ --+..+..|++.=- -.||.|.|+..
T Consensus 126 ~EI~~Av~~~~~~~---~~~l~llHC~s~Y------P~~~e~-------~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 126 EEIERAVEVLREAG---NEDLVLLHCVSSY------PTPPED-------VNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp HHHHHHHHHHHHHC---T--EEEEEE-SSS------S--GGG---------TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred HHHHHHHHHHHhcC---CCCEEEEecCCCC------CCChHH-------cChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 56666666553433 4588999987543 222222 23455666665422 57899999853
No 155
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=27.98 E-value=1.3e+02 Score=29.29 Aligned_cols=106 Identities=21% Similarity=0.160 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCC-CChhh--------HH--HHHHHHHHHcCCCcccEEEeeCCCCCCC
Q 020679 61 SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGH-AHRQL--------VL--PALQTSLKNLGLEYIDLYLIHFPGSLKP 129 (323)
Q Consensus 61 sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~-~~~~~--------i~--~~le~SL~~Lg~d~iDl~~lH~p~~~~~ 129 (323)
..+.+-.+-++.+... -+.++++++=++.-. ..+-. |. -.-.+.-+||.+.|+|..-
T Consensus 149 TyeT~~~~~r~h~~gd---L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~a--------- 216 (561)
T COG2987 149 TYETFAEAGRQHFGGD---LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEIA--------- 216 (561)
T ss_pred hHHHHHHHHHHhcCCC---ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhhc---------
Confidence 4455555555554322 467788888775321 11100 11 1123445789999988621
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCcee--ecccC
Q 020679 130 GTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAV--NQVEL 192 (323)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~--~q~~~ 192 (323)
.+++++++-.++..++|+-.+||+-....+.+.++++.. +.|++ -|...
T Consensus 217 -------------~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~-~~pD~vtDQTsa 267 (561)
T COG2987 217 -------------ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRG-IRPDLVTDQTSA 267 (561)
T ss_pred -------------CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcC-CCCceecccccc
Confidence 238899999999999999999999998888899988864 44433 46543
No 156
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=27.78 E-value=2.4e+02 Score=24.09 Aligned_cols=57 Identities=16% Similarity=0.348 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHHHHHHHHhCC--cEEEeCC--CCHHHHHH
Q 020679 199 KKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQVSLRWVYQQG--VSLVVKS--FNKERMKE 274 (323)
Q Consensus 199 ~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~i~g~--~~~~~l~e 274 (323)
.+.+++.+++++.++.+.+-- .-|-.++||+|++.++ ...+.|+ ...+|.-.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~eK------------------------D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~la 105 (203)
T TIGR01378 50 EEELDFYKKAGVKIIVFPPEK------------------------DTTDLELALKYALERGADEITILGATGGRLDHTLA 105 (203)
T ss_pred HHHHHHHHHcCCceEEcCCCC------------------------CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHH
Confidence 566777788888777654441 2467888999999887 4667775 57899999
Q ss_pred hhccc
Q 020679 275 NLDIF 279 (323)
Q Consensus 275 nl~a~ 279 (323)
|+..+
T Consensus 106 ni~~L 110 (203)
T TIGR01378 106 NLNLL 110 (203)
T ss_pred HHHHH
Confidence 98865
No 157
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=27.60 E-value=1.5e+02 Score=25.03 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=51.2
Q ss_pred CCccCcccccccccCCCCChHHHHHHHHHHHHcCCCEEecCCCcCC---HHHHHHHHHHHHHcCCCCCCCceEEeeecCC
Q 020679 16 GKTIPLVGFGTAQFPFGAATEVVKESVVHAIEVGYRHFDTAAIYQS---EQPLGEAIAEALRLGLIKSRNELFITSKLWL 92 (323)
Q Consensus 16 g~~vs~lglG~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Ygs---E~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~ 92 (323)
|..+--|||++.... +....+.|.. +++-+=.+|+.++... ++.+-.+++.. +++- +.-.+++++-++.
T Consensus 33 ~~~~iNLGfsG~~~l----e~~~a~~ia~-~~a~~~~ld~~~N~~~~~~~~~~~~fv~~i-R~~h--P~tPIllv~~~~~ 104 (178)
T PF14606_consen 33 GLDVINLGFSGNGKL----EPEVADLIAE-IDADLIVLDCGPNMSPEEFRERLDGFVKTI-REAH--PDTPILLVSPIPY 104 (178)
T ss_dssp T-EEEEEE-TCCCS------HHHHHHHHH-S--SEEEEEESHHCCTTTHHHHHHHHHHHH-HTT---SSS-EEEEE----
T ss_pred CCCeEeeeecCcccc----CHHHHHHHhc-CCCCEEEEEeecCCCHHHHHHHHHHHHHHH-HHhC--CCCCEEEEecCCc
Confidence 455666777654332 3444444433 3666667777777552 44455556554 3342 5667888887643
Q ss_pred CC--------CChhhHHHHHHHHHHHc-CCCcccEEEeeCCC
Q 020679 93 GH--------AHRQLVLPALQTSLKNL-GLEYIDLYLIHFPG 125 (323)
Q Consensus 93 ~~--------~~~~~i~~~le~SL~~L-g~d~iDl~~lH~p~ 125 (323)
.. ......++.+++..+.| .-..-++++++..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 105 PAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 21 23356777788888777 22355788888654
No 158
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=27.42 E-value=3e+02 Score=25.62 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=39.0
Q ss_pred HHHHHHHHHHc--CCc-cEEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEe
Q 020679 148 VWEAMEECQNL--GLT-KSIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAY 215 (323)
Q Consensus 148 ~~~~L~~l~~~--G~I-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~ 215 (323)
-++.+.+|+++ -.| -..|=|.++..++.++++....+ ++|....-. .+-..+.++|+.+|+.++.+
T Consensus 221 d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~d--iv~~d~~~~GGit~~~~ia~~A~a~gi~~~~h 292 (352)
T cd03328 221 DLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVD--VLQADVTRCGGVTGFLQAAALAAAHHVDLSAH 292 (352)
T ss_pred hHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCC--EEecCccccCCHHHHHHHHHHHHHcCCeeccC
Confidence 35666666665 222 24455666777777777655433 666554432 22356777777777777764
No 159
>PRK09061 D-glutamate deacylase; Validated
Probab=27.22 E-value=6.2e+02 Score=25.01 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCCEEecCCCc--C-CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCC-ChhhHHHHHHHHHH---H
Q 020679 38 VKESVVHAIEVGYRHFDTAAIY--Q-SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHA-HRQLVLPALQTSLK---N 110 (323)
Q Consensus 38 ~~~~l~~A~~~Gin~~DTA~~Y--g-sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~-~~~~i~~~le~SL~---~ 110 (323)
..++++.|++.|+..|=+...| + +...+-+.++.. .+-+..|...+..... ++.....++++.++ .
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A-------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA-------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH-------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHH
Confidence 6677888999999999776666 2 455555555554 3444566666643221 11222333343333 3
Q ss_pred cCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCC
Q 020679 111 LGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFA 170 (323)
Q Consensus 111 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~ 170 (323)
.|. -+...|-..... ....+.++.+++++++|.-=..-++-|.
T Consensus 244 ~G~---rv~IsHlss~g~--------------~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 244 TGA---HMHICHVNSTSL--------------RDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred hCC---CEEEEeeccCCc--------------ccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 443 355666532111 1257888999999999854444444443
No 160
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=27.19 E-value=4.7e+02 Score=23.65 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=69.2
Q ss_pred CChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH--cCCccE-EEcCCCCH
Q 020679 95 AHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQN--LGLTKS-IGVSNFAC 171 (323)
Q Consensus 95 ~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~G~Ir~-iGvs~~~~ 171 (323)
.+.+.+++.++..+. -| +|-+++-..... ...++.+|-.+.++..++ .|++.- .|++..+.
T Consensus 18 iD~~~l~~lv~~~~~-~G---v~gi~v~GstGE------------~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t 81 (294)
T TIGR02313 18 IDEEALRELIEFQIE-GG---SHAISVGGTSGE------------PGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNH 81 (294)
T ss_pred cCHHHHHHHHHHHHH-cC---CCEEEECccCcc------------cccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchH
Confidence 345667766666665 34 455666543221 124566776666666554 576644 58887766
Q ss_pred HHHHHH---HHhCCCCceeecccCChhhhhHHHHH----HHHHh-CceEEEeccCCCCCCCCCCCCccChHHHHHHHHH
Q 020679 172 KKLERL---LATAKIPPAVNQVELNPVWQQKKLRV----FCEKK-GIHITAYSPLGAKGTRWGTNRVMECQVLKEIANA 242 (323)
Q Consensus 172 ~~l~~~---~~~~~~~~~~~q~~~~~~~~~~~ll~----~~~~~-gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~ 242 (323)
.+..++ .+..+.+..++..++.....++++++ .|.+- ++.++.|..=...|. .+..+.+.+++++
T Consensus 82 ~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~------~l~~~~l~~L~~~ 154 (294)
T TIGR02313 82 DETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQ------EIAPKTMARLRKD 154 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCc------CCCHHHHHHHHhh
Confidence 543333 23344565666666543333455544 46666 899999964322122 2344555566543
No 161
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.14 E-value=4.6e+02 Score=23.49 Aligned_cols=121 Identities=10% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEEE---eeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcC----------
Q 020679 101 LPALQTSLKNLGLEYIDLYL---IHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVS---------- 167 (323)
Q Consensus 101 ~~~le~SL~~Lg~d~iDl~~---lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs---------- 167 (323)
+..+-..|.++|+++|++-. .+.+..+...+ ..+.++.+.++..+-++..+.-+
T Consensus 23 ~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~-------------~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p 89 (275)
T cd07937 23 MLPIAEALDEAGFFSLEVWGGATFDVCMRFLNED-------------PWERLRELRKAMPNTPLQMLLRGQNLVGYRHYP 89 (275)
T ss_pred HHHHHHHHHHcCCCEEEccCCcchhhhccccCCC-------------HHHHHHHHHHhCCCCceehhcccccccCccCCC
Q ss_pred -CCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHH
Q 020679 168 -NFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANA 242 (323)
Q Consensus 168 -~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~ 242 (323)
+.....++...+.+ ++..-+-.+.|.+..-.+.+++++++|..+...-.+.. ......+.+.+++++
T Consensus 90 ~~~~~~di~~~~~~g-~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~-------~~~~~~~~~~~~~~~ 157 (275)
T cd07937 90 DDVVELFVEKAAKNG-IDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTG-------SPVHTLEYYVKLAKE 157 (275)
T ss_pred cHHHHHHHHHHHHcC-CCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecC-------CCCCCHHHHHHHHHH
No 162
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=27.13 E-value=1.5e+02 Score=25.34 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCccEEEcCCC-CHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEE
Q 020679 150 EAMEECQNLGLTKSIGVSNF-ACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITA 214 (323)
Q Consensus 150 ~~L~~l~~~G~Ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 214 (323)
+.++.++++--=-.||..+. +.++++++++.+- ++.+- | .-+.+++++|+++|+.+++
T Consensus 48 ~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA-~FivS-----P-~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 48 EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA-QFIVS-----P-GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEEE-----S-S--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC-CEEEC-----C-CCCHHHHHHHHHcCCcccC
Confidence 44444443322246888774 5788888888763 22222 1 1246899999999999997
No 163
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=26.97 E-value=89 Score=24.00 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcC
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQ 60 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~Yg 60 (323)
...+.+....+++.|+++||.+..|.
T Consensus 76 ~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 76 HGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp HHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred hhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 67788888999999999999999984
No 164
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.90 E-value=4.9e+02 Score=24.37 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=56.3
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHc-CC-c--cEEEcCCC--CHHHHHHHHHhCC-CCceeeccc
Q 020679 119 YLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNL-GL-T--KSIGVSNF--ACKKLERLLATAK-IPPAVNQVE 191 (323)
Q Consensus 119 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~-I--r~iGvs~~--~~~~l~~~~~~~~-~~~~~~q~~ 191 (323)
+-||.|+......-.|... ..+.+++++++.++.++ |+ | +++=+.++ +.+.++++.+... ....++-++
T Consensus 216 iSLhA~~~e~R~~l~Pi~~----~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIP 291 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEE----KFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIP 291 (342)
T ss_pred EEecCCChhhcceEeeccc----cCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEc
Confidence 6789887654432111111 13478899999987654 22 2 24434433 3455554444322 234477778
Q ss_pred CChhhhh---------HHHHHHHHHhCceEEEeccCCC
Q 020679 192 LNPVWQQ---------KKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 192 ~~~~~~~---------~~ll~~~~~~gi~via~~~l~~ 220 (323)
||+.... ....+..+++||.+..+...|.
T Consensus 292 yN~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 292 LNTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 8763211 3456667888999999888764
No 165
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=26.81 E-value=6e+02 Score=24.76 Aligned_cols=115 Identities=16% Similarity=0.060 Sum_probs=63.0
Q ss_pred CCcCCHHHHHHHHHHHHHcCCCCC-CCceEEeeecCCCCCChhhHHHHHHHHHHHcC---C--CcccEEEeeCCCCCCCC
Q 020679 57 AIYQSEQPLGEAIAEALRLGLIKS-RNELFITSKLWLGHAHRQLVLPALQTSLKNLG---L--EYIDLYLIHFPGSLKPG 130 (323)
Q Consensus 57 ~~YgsE~~vG~~l~~~~~~g~~~~-R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg---~--d~iDl~~lH~p~~~~~~ 130 (323)
-.||.|+.|-+++++..+.. + .+-++|.|-+... .-.+.+..-+++.-++++ . ..+.++.+|.|+.....
T Consensus 72 ~VfGg~~~L~~ai~~~~~~~---~~p~~i~v~ttc~~e-iiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~ 147 (461)
T TIGR02931 72 AVFGALDRVEEAVDVLLTRY---PDVKVVPIITTCSTE-IIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSM 147 (461)
T ss_pred eEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHH-hhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcH
Confidence 35788888888988765432 3 3345666665321 112345555555444442 1 13578999988754320
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHH-HHH----cCCccEEEcCCC--CHHHHHHHHHhCCCCce
Q 020679 131 TGFPFNKEDIVPLDYEAVWEAMEE-CQN----LGLTKSIGVSNF--ACKKLERLLATAKIPPA 186 (323)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~L~~-l~~----~G~Ir~iGvs~~--~~~~l~~~~~~~~~~~~ 186 (323)
....+.+++++-+ +.. +++|.-||.... +.+.+.++++..++.+.
T Consensus 148 -----------~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 148 -----------ITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred -----------HHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceE
Confidence 0112333333332 222 467888885432 45667888887776643
No 166
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=26.75 E-value=4.2e+02 Score=22.94 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhH-----HHHHHHHHHHc
Q 020679 37 VVKESVVHAIEVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLV-----LPALQTSLKNL 111 (323)
Q Consensus 37 ~~~~~l~~A~~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i-----~~~le~SL~~L 111 (323)
+..+.++.|.+.|+.-+=+.+.| ....++.+. + .+..+-+..++.......+.- ..++++.++ +
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~------~~~~~~~~~-~---~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~-~ 88 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGY------VKPAAELLA-G---SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR-L 88 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGG------HHHHHHHST-T---STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH-T
T ss_pred hHHHHHHHHHHhCCCEEEECHHH------HHHHHHHhh-c---cccccceEEEeCCCCCccccccccchHHHHHHHHH-c
Confidence 78999999999999999888877 333333211 1 223555566654333333433 577888754 9
Q ss_pred CCCcccEEEeeCC
Q 020679 112 GLEYIDLYLIHFP 124 (323)
Q Consensus 112 g~d~iDl~~lH~p 124 (323)
|.|-+|++.-..+
T Consensus 89 GAd~vd~vi~~~~ 101 (236)
T PF01791_consen 89 GADEVDVVINYGA 101 (236)
T ss_dssp T-SEEEEEEEHHH
T ss_pred CCceeeeeccccc
Confidence 9999999877743
No 167
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=26.57 E-value=1.6e+02 Score=23.86 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=55.7
Q ss_pred ChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH--cCCccEEEcCCCCHHH
Q 020679 96 HRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQN--LGLTKSIGVSNFACKK 173 (323)
Q Consensus 96 ~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~G~Ir~iGvs~~~~~~ 173 (323)
+-+.+.+.+++-.+.+|. .++++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.
T Consensus 27 tl~~i~~~~~~~a~~~g~-~~~~~QSN~---------------------EGelId~i~~a~~~~dgiIINpga~THtSiA 84 (146)
T PRK13015 27 TLADVEALCRAAAEALGL-EVEFRQSNH---------------------EGELIDWIHEARGDVAGIVINPGAYTHTSVA 84 (146)
T ss_pred CHHHHHHHHHHHHHHcCC-EEEEEeeCc---------------------HHHHHHHHHHhhhcCCEEEEcchHHhhhHHH
Confidence 457899999999999986 356555432 3567777777654 4666666777888888
Q ss_pred HHHHHHhCCCCceeecccCChhhhh
Q 020679 174 LERLLATAKIPPAVNQVELNPVWQQ 198 (323)
Q Consensus 174 l~~~~~~~~~~~~~~q~~~~~~~~~ 198 (323)
+..++.....+ ++.+-++....+
T Consensus 85 l~DAl~~~~~P--~VEVHiSNi~aR 107 (146)
T PRK13015 85 IRDALAALELP--VIEVHISNVHAR 107 (146)
T ss_pred HHHHHHcCCCC--EEEEEcCCcccc
Confidence 88888887776 666666555443
No 168
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=26.52 E-value=4.7e+02 Score=23.45 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHcCCCEEec----------CCCcC-CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHH
Q 020679 35 TEVVKESVVHAIEVGYRHFDT----------AAIYQ-SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPA 103 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DT----------A~~Yg-sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~ 103 (323)
.++..+..+.+.+.|+..||. ...|+ +.+.+-+.++... ..-++-|..|+.+.. +.+ ..
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr------~~~~~Pv~vKl~~~~---~~~-~~ 170 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK------KATDVPVIVKLTPNV---TDI-VE 170 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH------hccCCCEEEEeCCCc---hhH-HH
Confidence 577788888888999999987 22344 5666666666541 111466888985432 222 23
Q ss_pred HHHHHHHcCCCcccEEE------eeCCCCCCCCCCCCCCC-CCCCC-CcHHHHHHHHHHHHHcCCccEEEcCCC-CHHHH
Q 020679 104 LQTSLKNLGLEYIDLYL------IHFPGSLKPGTGFPFNK-EDIVP-LDYEAVWEAMEECQNLGLTKSIGVSNF-ACKKL 174 (323)
Q Consensus 104 le~SL~~Lg~d~iDl~~------lH~p~~~~~~~~~~~~~-~~~~~-~~~~~~~~~L~~l~~~G~Ir~iGvs~~-~~~~l 174 (323)
+-+.+...|.|.+++.- +|.-. ..+- .... ..+.. ....-.++.+.++++.=.|.-||+... +.+.+
T Consensus 171 ~a~~~~~~G~d~i~~~nt~~g~~~~~~~-~~~~---~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 171 IARAAEEAGADGLTLINTLKGMAIDIET-RKPI---LGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred HHHHHHHcCCCEEEEECCCccccccccc-Ccee---ecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 33456778887765531 11100 0000 0000 00000 011235666677777656888998886 57888
Q ss_pred HHHHHhCCCCceeecccC----Chhhhh---HHHHHHHHHhCc
Q 020679 175 ERLLATAKIPPAVNQVEL----NPVWQQ---KKLRVFCEKKGI 210 (323)
Q Consensus 175 ~~~~~~~~~~~~~~q~~~----~~~~~~---~~ll~~~~~~gi 210 (323)
.+++..+ .+ .+|+-- ++.... +++.++.+++|.
T Consensus 247 ~~~l~~G-Ad--~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMAG-AS--AVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHcC-CC--EEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 8888754 33 555432 221111 456666666663
No 169
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=26.44 E-value=4.8e+02 Score=25.65 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCCCCHHHH
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSNFACKKL 174 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l 174 (323)
-.++.+.+-+.---|-|-+.|+-++++..+
T Consensus 297 Sr~i~K~ivky~TpGnVaAfGlEsaDp~V~ 326 (560)
T COG1031 297 SREIAKVIVKYGTPGNVAAFGLESADPRVA 326 (560)
T ss_pred HHHHHHHHHhhCCCCceeeeeccccCHHHH
Confidence 456777777788889999999999875443
No 170
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.36 E-value=3.6e+02 Score=23.98 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCcC--CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCC------CChhhHHHHHHHH
Q 020679 36 EVVKESVVHAIEVGYRHFDTAAIYQ--SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGH------AHRQLVLPALQTS 107 (323)
Q Consensus 36 ~~~~~~l~~A~~~Gin~~DTA~~Yg--sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~------~~~~~i~~~le~S 107 (323)
....+.++.+-+.|++.+..++.+- +++..-++++.. ....+.+.|-++.++ .+++.+.+++++-
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 4566788888899999999999776 666667788876 566688999988653 2356677777777
Q ss_pred HHHcCCCcccEEEeeC
Q 020679 108 LKNLGLEYIDLYLIHF 123 (323)
Q Consensus 108 L~~Lg~d~iDl~~lH~ 123 (323)
|+. |. |.+.+-.
T Consensus 157 LeA-GA---~~ViiEa 168 (244)
T PF02679_consen 157 LEA-GA---DKVIIEA 168 (244)
T ss_dssp HHH-TE---CEEEE--
T ss_pred HHC-CC---CEEEEee
Confidence 764 54 5566664
No 171
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=26.33 E-value=6.4e+02 Score=24.92 Aligned_cols=128 Identities=13% Similarity=0.171 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCC
Q 020679 64 PLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPL 143 (323)
Q Consensus 64 ~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 143 (323)
-+|.+|+ .+.+++|+-.+..+|...+.+..-+.+.+.+-++.- --+-|.-- +...+
T Consensus 343 dlG~~L~---------~~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~p-qQI~lElT--------------ER~f~ 398 (524)
T COG4943 343 DLGDLLR---------QHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRP-QQIALELT--------------ERTFA 398 (524)
T ss_pred HhHHHHH---------hCcceEEEEeeeehhhcCchHHHHHHHHHHhcCcCh-HHheeehh--------------hhhhc
Confidence 3566665 356688998888778777788888888888776532 11111111 11134
Q ss_pred cHHHHHHHHHHHHHcCCccEEEcCCCCH--HHHHHHHH----hCCCCceeecc-cCChhhh--hHHHHHHHHHhCceEEE
Q 020679 144 DYEAVWEAMEECQNLGLTKSIGVSNFAC--KKLERLLA----TAKIPPAVNQV-ELNPVWQ--QKKLRVFCEKKGIHITA 214 (323)
Q Consensus 144 ~~~~~~~~L~~l~~~G~Ir~iGvs~~~~--~~l~~~~~----~~~~~~~~~q~-~~~~~~~--~~~ll~~~~~~gi~via 214 (323)
+.......+.++++.|.=-+| -.|.. ..+..+.+ .-+++=.+++. .++.... -..+++.|+.+|+.+++
T Consensus 399 D~~~~~~iI~r~ReaG~~IyI--DDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVa 476 (524)
T COG4943 399 DPKKMTPIILRLREAGHEIYI--DDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVA 476 (524)
T ss_pred CchhhhHHHHHHHhcCCeEEE--ccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEe
Confidence 566778889999999984443 33321 12222211 11122223321 1111111 15789999999999998
Q ss_pred ecc
Q 020679 215 YSP 217 (323)
Q Consensus 215 ~~~ 217 (323)
=+.
T Consensus 477 EGV 479 (524)
T COG4943 477 EGV 479 (524)
T ss_pred ecc
Confidence 433
No 172
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=26.28 E-value=5.3e+02 Score=23.90 Aligned_cols=165 Identities=13% Similarity=0.156 Sum_probs=80.1
Q ss_pred CCceeeCCCCCccCccc--ccccccCCCCChHHHHHHHHHHH-HcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCc
Q 020679 7 IPEAPLGSTGKTIPLVG--FGTAQFPFGAATEVVKESVVHAI-EVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNE 83 (323)
Q Consensus 7 m~~~~lg~tg~~vs~lg--lG~~~~~~~~~~~~~~~~l~~A~-~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~ 83 (323)
++-..+.+ ++++..|. |....|.... -.++.+++...+ +.+.+.|=|=..==.-.-++..++.+++.|. =+
T Consensus 14 v~~~~~~~-~~~v~~l~~~~~~~gF~A~~-l~~A~~i~~~ml~~~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~----VD 87 (316)
T PRK02301 14 VKQAEVRP-GMTVGELVREYGGAGFGAGR-LAEAVDIYEEMLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGH----ID 87 (316)
T ss_pred CCCCCCCC-CCcHHHHHHHHHhcCccHHH-HHHHHHHHHHHHhCCCCeEEEEcccchhHHHHHHHHHHHHHcCC----ee
Confidence 33344443 56665542 2222232222 456778888888 5666654321100023445677777765553 24
Q ss_pred eEEeeecCCCCCChhhHHHHH------------HHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHH-
Q 020679 84 LFITSKLWLGHAHRQLVLPAL------------QTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWE- 150 (323)
Q Consensus 84 ~~i~tK~~~~~~~~~~i~~~l------------e~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (323)
++|+|=... .+.+.+++ +.-|++.|+++|==+++..-. + ..+++.+.
T Consensus 88 ~iVtTgani----ehD~~~~lg~~~y~G~~~~dd~~Lr~~ginRIgd~~ip~e~-y---------------~~~E~~i~~ 147 (316)
T PRK02301 88 VLVTTGANL----THDVIEAIGGHHHHGTAHAHDEELRDEGIDRIYDVYLPQEH-F---------------ADFEEFLQD 147 (316)
T ss_pred EEEcCCCch----HHHHHHHcCCCeeccCCCCCHHHHHHcCCCccceeCCChHH-H---------------HHHHHHHHH
Confidence 555554321 11222222 456666776666444443210 0 12333332
Q ss_pred HHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccC
Q 020679 151 AMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 151 ~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l 218 (323)
.++++.+++ .|++..+...+-.. ++.+..++.+|.+++|+|+.-...
T Consensus 148 il~~~~~~~--------~~s~~e~i~~lGk~-------------i~~e~Sil~~Ay~~~VPIf~Pa~~ 194 (316)
T PRK02301 148 VFPGLEEEG--------TVSIRDLLTEIGRD-------------LDDDSGILAAAYECDVPVYCPAIQ 194 (316)
T ss_pred HHHhhhhcC--------CcCHHHHHHHHHhh-------------ccCCCcHHHHHHHcCCCEECCCcc
Confidence 344444332 24555443322111 112467999999999999985444
No 173
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=26.20 E-value=5.6e+02 Score=24.15 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhh---hHHHHHHHHHhCceEEEeccCC
Q 020679 146 EAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQ---QKKLRVFCEKKGIHITAYSPLG 219 (323)
Q Consensus 146 ~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~via~~~l~ 219 (323)
...+..+..+...+.+...-+...+.+.+++++.. +.+..++..+-|+... -+.+.+.|+++|+-++.=..++
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~ 176 (382)
T TIGR02080 101 GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFL 176 (382)
T ss_pred HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCc
Confidence 34555555555555555554545567777776643 2344455555565432 2788999999998888765554
No 174
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=26.07 E-value=5.2e+02 Score=23.76 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCC---------CCHHHHHHHHHhCCCCceeecccCChh---hh-hHHHHHHHHHhCce
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSN---------FACKKLERLLATAKIPPAVNQVELNPV---WQ-QKKLRVFCEKKGIH 211 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~-~~~ll~~~~~~gi~ 211 (323)
...+.+-++.+++-|.+..|.+.+ .+.+.++.+.+.+ .. ..+-+..+.. .. -.+.+..+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g-~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSG-KT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcC-Cc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 456777788888888776555543 2334444444443 22 2232233211 11 15668888999999
Q ss_pred EEEeccCCC
Q 020679 212 ITAYSPLGA 220 (323)
Q Consensus 212 via~~~l~~ 220 (323)
+...+++..
T Consensus 230 v~~q~vLl~ 238 (321)
T TIGR03822 230 MVSQSVLLR 238 (321)
T ss_pred EEEEeeEeC
Confidence 999888865
No 175
>PLN00191 enolase
Probab=26.05 E-value=4.9e+02 Score=25.48 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=56.3
Q ss_pred CcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcC--CCCHHHHHHHHHhCCCCceeeccc
Q 020679 114 EYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVS--NFACKKLERLLATAKIPPAVNQVE 191 (323)
Q Consensus 114 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs--~~~~~~l~~~~~~~~~~~~~~q~~ 191 (323)
+..++.++-.|.. ++-|+.+.+|.+..++.-+|=- ..++..+.++++..-.+ ++++.
T Consensus 309 ~~y~I~~IEDPl~-------------------~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad--~i~iK 367 (457)
T PLN00191 309 SDYPIVSIEDPFD-------------------QDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACN--ALLLK 367 (457)
T ss_pred hcCCcEEEECCCC-------------------cccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCC--EEEec
Confidence 3346788887742 2447778888888888877722 24588888888875544 55555
Q ss_pred CChh---hhhHHHHHHHHHhCceEEEec
Q 020679 192 LNPV---WQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 192 ~~~~---~~~~~ll~~~~~~gi~via~~ 216 (323)
.+-. .+..++.+.|+++|+.++...
T Consensus 368 l~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 368 VNQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred ccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 4432 334788999999999998743
No 176
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=25.90 E-value=9.7e+02 Score=26.84 Aligned_cols=92 Identities=15% Similarity=0.016 Sum_probs=58.9
Q ss_pred HHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcC-Cc--cEEEcCCCCHHHHHHHHHhCCCCc
Q 020679 109 KNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLG-LT--KSIGVSNFACKKLERLLATAKIPP 185 (323)
Q Consensus 109 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~I--r~iGvs~~~~~~l~~~~~~~~~~~ 185 (323)
-.-|.+.||+- ++.. ..+-++.+..+..+.+.- .+ --|-+-+..++.++.+++.....+
T Consensus 394 ve~GA~iIDVn----~g~~--------------~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~ 455 (1229)
T PRK09490 394 VENGAQIIDIN----MDEG--------------MLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKG 455 (1229)
T ss_pred HHCCCCEEEEC----CCCC--------------CCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCC
Confidence 35688999994 2211 123344444444433321 11 347778888999999999877777
Q ss_pred eeecccCChhhh-hHHHHHHHHHhCceEEEeccC
Q 020679 186 AVNQVELNPVWQ-QKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 186 ~~~q~~~~~~~~-~~~ll~~~~~~gi~via~~~l 218 (323)
.+|-+..--... -.++++.|+++|..++++..-
T Consensus 456 IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~d 489 (1229)
T PRK09490 456 IVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFD 489 (1229)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecC
Confidence 788655432221 247999999999999998643
No 177
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=25.90 E-value=3.6e+02 Score=26.12 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCC-ccEEEcCCCCHHHHHHHHHhCC-----CCceeecccCChhhhhHHHHHHHHHhCceEEEeccC
Q 020679 148 VWEAMEECQNLGL-TKSIGVSNFACKKLERLLATAK-----IPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 148 ~~~~L~~l~~~G~-Ir~iGvs~~~~~~l~~~~~~~~-----~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l 218 (323)
+.+..+.++++|. ++++.+.+-....++++.+.-+ +.+..+........+-+++...|++.||.+++=..-
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQ 220 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhh
Confidence 4566667777774 3677777543333333333222 111222233333344478888888888866654333
No 178
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=25.70 E-value=4.8e+02 Score=23.23 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHH
Q 020679 99 LVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLL 178 (323)
Q Consensus 99 ~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~ 178 (323)
.+...+.+..++||+.| ++=-+.|.....+ ...+....+++-++.|+++|++=-+. |=.-.|+..+...+.
T Consensus 35 ~~a~~lk~~t~~lgi~~---vfKsSfDKANRsS-----i~s~RGpGLeeglki~~~vK~efgv~-ilTDVHe~~q~~~vA 105 (279)
T COG2877 35 EIAEHLKELTEKLGIPY---VFKSSFDKANRSS-----IHSYRGPGLEEGLKILQEVKEEFGVP-ILTDVHEPSQAQPVA 105 (279)
T ss_pred HHHHHHHHHHhccCCce---EEecccccccccc-----cccccCCCHHHHHHHHHHHHHHcCCc-eeeccCChhhcchHH
Confidence 45556667777887755 4444433322211 11233456899999999999982221 112346677776665
Q ss_pred HhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEec
Q 020679 179 ATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 179 ~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~ 216 (323)
+.+ ++.|++-- ++++.+++..+.+.|-.|-..+
T Consensus 106 ~Vv----DilQiPAF-LcRQTDLl~A~AkTg~~vNiKK 138 (279)
T COG2877 106 EVV----DVLQIPAF-LCRQTDLLVAAAKTGAVVNVKK 138 (279)
T ss_pred hhh----hhhcchHH-HhhhHHHHHHHHHhCCeEeecc
Confidence 543 37888764 3667888888888887665543
No 179
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=25.68 E-value=5.1e+02 Score=23.56 Aligned_cols=157 Identities=13% Similarity=0.066 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCCEEecC--C----CcC-C-HHHHH---HHHHHHHHc-CCCCCCCceEEeeecCCCCCChhhHHHHHH
Q 020679 38 VKESVVHAIEVGYRHFDTA--A----IYQ-S-EQPLG---EAIAEALRL-GLIKSRNELFITSKLWLGHAHRQLVLPALQ 105 (323)
Q Consensus 38 ~~~~l~~A~~~Gin~~DTA--~----~Yg-s-E~~vG---~~l~~~~~~-g~~~~R~~~~i~tK~~~~~~~~~~i~~~le 105 (323)
+...+..+++.|++++|.- + .+| + ++.+. +++++..++ | -|-.+.++ +. ...+++.+.+.++
T Consensus 74 ~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~g---i~~~li~~--~~-r~~~~~~~~~~~~ 147 (324)
T TIGR01430 74 AYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFG---IKSRLILC--GM-RHKQPEAAEETLE 147 (324)
T ss_pred HHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcC---CeEEEEEE--Ee-CCCCHHHHHHHHH
Confidence 5566777788999999942 1 223 2 33332 333332111 2 12222222 22 2234566777777
Q ss_pred HHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCC-CHHHHHHHHHhCCCC
Q 020679 106 TSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNF-ACKKLERLLATAKIP 184 (323)
Q Consensus 106 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~-~~~~l~~~~~~~~~~ 184 (323)
..++ .+-+.+--+-++..... ...+...+.++.+++.|+--.+=++.. ........+...+..
T Consensus 148 ~~~~-~~~~~vvg~~l~~~e~~---------------~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ 211 (324)
T TIGR01430 148 LAKP-YKEQTIVGFGLAGDERG---------------GPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGAT 211 (324)
T ss_pred HHHh-hccCcEEEecCCCCCCC---------------CCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCch
Confidence 6654 33222222223322111 125566777888888887655544433 233444444322221
Q ss_pred ceeecccCChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 185 PAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 185 ~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
.+-..++ +....+.++..+++|+.+.. .|..+
T Consensus 212 --ri~Hg~~-l~~~~~~i~~l~~~gi~v~~-cP~Sn 243 (324)
T TIGR01430 212 --RIGHGVR-ALEDPELLKRLAQENITLEV-CPTSN 243 (324)
T ss_pred --hcchhhh-hccCHHHHHHHHHcCceEEE-CCccc
Confidence 1111111 11235788999999998754 45543
No 180
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=25.62 E-value=4.8e+02 Score=25.08 Aligned_cols=63 Identities=24% Similarity=0.236 Sum_probs=32.9
Q ss_pred cCCCEEecCCCcC------CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCCcccEEEe
Q 020679 48 VGYRHFDTAAIYQ------SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLI 121 (323)
Q Consensus 48 ~Gin~~DTA~~Yg------sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~l 121 (323)
.|=+|+|....|+ +...+=+++++- -+++..++-.+.. .....+-+.|-.+-- ..|-++.
T Consensus 40 ~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q--------~~kl~h~sn~~~~-----~~~~~la~~L~~~s~-~~d~vff 105 (404)
T COG4992 40 QGREYLDFAAGIAVNNLGHCHPALVEALKEQ--------AEKLWHVSNLFYN-----EPQAELAEKLVELSP-FADRVFF 105 (404)
T ss_pred CCCEeeeeccceeeeccCCCCHHHHHHHHHH--------HHHhhhcccccCC-----hHHHHHHHHHHhhCc-cccEEEE
Confidence 4777888777776 456666777652 3444444444322 223333344433322 3566666
Q ss_pred eCC
Q 020679 122 HFP 124 (323)
Q Consensus 122 H~p 124 (323)
-+.
T Consensus 106 ~NS 108 (404)
T COG4992 106 CNS 108 (404)
T ss_pred cCC
Confidence 554
No 181
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.53 E-value=5.7e+02 Score=24.01 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHH
Q 020679 98 QLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERL 177 (323)
Q Consensus 98 ~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~ 177 (323)
..-+-.+-+.|.++|+++|++-..-.|.. .|. ..+.+++++++.+ ...++..++. .....++.+
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~-vPq-----------mad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A 130 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKW-VPQ-----------LADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAA 130 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCccc-ccc-----------cccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHH
Confidence 34555677779999999999864333321 110 1123455555543 2234555554 477888888
Q ss_pred HHhCCCCceeecccCChhhh---------h-----HHHHHHHHHhCceEEEe
Q 020679 178 LATAKIPPAVNQVELNPVWQ---------Q-----KKLRVFCEKKGIHITAY 215 (323)
Q Consensus 178 ~~~~~~~~~~~q~~~~~~~~---------~-----~~ll~~~~~~gi~via~ 215 (323)
++.+ .+...+-++.+.... + .+++.+|+++|..+.++
T Consensus 131 ~~~g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 131 IAAG-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred HHcC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 8764 222122222222211 1 46789999999888543
No 182
>PRK00077 eno enolase; Provisional
Probab=25.53 E-value=6.1e+02 Score=24.41 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=51.3
Q ss_pred ccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcC--CccEEEcCC--CCHHHHHHHHHhCCCCceeeccc
Q 020679 116 IDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLG--LTKSIGVSN--FACKKLERLLATAKIPPAVNQVE 191 (323)
Q Consensus 116 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G--~Ir~iGvs~--~~~~~l~~~~~~~~~~~~~~q~~ 191 (323)
.+++++-.|.. .+-|+.+.+|.+.- +|.-.|=-. .+...+.++++....+ ++|+.
T Consensus 277 y~i~~iEdPl~-------------------~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d--~v~ik 335 (425)
T PRK00077 277 YPIVSIEDGLD-------------------ENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAAN--SILIK 335 (425)
T ss_pred CCcEEEEcCCC-------------------CccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCC--EEEeC
Confidence 46788887753 12356666666663 565555332 3588899988876544 66665
Q ss_pred CChh---hhhHHHHHHHHHhCceEEE
Q 020679 192 LNPV---WQQKKLRVFCEKKGIHITA 214 (323)
Q Consensus 192 ~~~~---~~~~~ll~~~~~~gi~via 214 (323)
.+.. ..-.++..+|+++|+.++.
T Consensus 336 ~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 336 VNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred ccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 5542 3347889999999998765
No 183
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.49 E-value=69 Score=25.45 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCceEEEeccCCC
Q 020679 199 KKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 199 ~~ll~~~~~~gi~via~~~l~~ 220 (323)
.++++.|+++||.+++|-.+..
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 7899999999999999988754
No 184
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=25.41 E-value=4.4e+02 Score=23.10 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhCCCCcee-e-cccCChhhhh-----HHHHHHHHHhCceEEEeccCCC
Q 020679 170 ACKKLERLLATAKIPPAV-N-QVELNPVWQQ-----KKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 170 ~~~~l~~~~~~~~~~~~~-~-q~~~~~~~~~-----~~ll~~~~~~gi~via~~~l~~ 220 (323)
++.+++.+.+..++.+.. | -.+||.+..+ ..+.++++.-|..-+...|+..
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd 107 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLND 107 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccC
Confidence 456677776766655533 2 2366666553 6789999999999999999965
No 185
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=25.37 E-value=3.2e+02 Score=21.13 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=45.2
Q ss_pred CCceEEeeecCCCCCChhhHHHHHHHHHHHcCCC------cccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 020679 81 RNELFITSKLWLGHAHRQLVLPALQTSLKNLGLE------YIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEE 154 (323)
Q Consensus 81 R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d------~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 154 (323)
|=.+.|+-|++.....+..+++.+.++++.+..+ -.|++++-.+... ..++.++.+.|..
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~--------------~~~~~~l~~~l~~ 112 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFE--------------EINFSHLNYELSK 112 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcc--------------cCCHHHHHHHHHH
Confidence 5567888887766666788999999999887642 4789999887532 2346677777766
Q ss_pred HH
Q 020679 155 CQ 156 (323)
Q Consensus 155 l~ 156 (323)
|.
T Consensus 113 l~ 114 (118)
T PRK01492 113 II 114 (118)
T ss_pred HH
Confidence 54
No 186
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=25.34 E-value=1.9e+02 Score=24.68 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCCCCHHHHH---HHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCCC
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSNFACKKLE---RLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGAK 221 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~---~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~~ 221 (323)
.+++.+..+.|.+.| |+.+=|+.-++..++ .+.+... +..+-- =++ .+.+-.+.|.+.|..++. ||-..
T Consensus 19 ~~~a~~~~~al~~gG-i~~iEiT~~t~~a~~~I~~l~~~~p-~~~vGA--GTV--~~~e~a~~a~~aGA~Fiv-SP~~~- 90 (196)
T PF01081_consen 19 PEDAVPIAEALIEGG-IRAIEITLRTPNALEAIEALRKEFP-DLLVGA--GTV--LTAEQAEAAIAAGAQFIV-SPGFD- 90 (196)
T ss_dssp GGGHHHHHHHHHHTT---EEEEETTSTTHHHHHHHHHHHHT-TSEEEE--ES----SHHHHHHHHHHT-SEEE-ESS---
T ss_pred HHHHHHHHHHHHHCC-CCEEEEecCCccHHHHHHHHHHHCC-CCeeEE--Eec--cCHHHHHHHHHcCCCEEE-CCCCC-
Confidence 456666677777766 778777766643332 2222211 111100 000 124556677777777765 34321
Q ss_pred CCCCCCCCccChHHHHHHHHHcCCCHHHHHHHHHHhCCcEEEeCCCCHHHHHHhhcc
Q 020679 222 GTRWGTNRVMECQVLKEIANARGKSVAQVSLRWVYQQGVSLVVKSFNKERMKENLDI 278 (323)
Q Consensus 222 G~l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~~~i~g~~~~~~l~enl~a 278 (323)
.-.++++..++...+||+.++.++...+++
T Consensus 91 ---------------------------~~v~~~~~~~~i~~iPG~~TptEi~~A~~~ 120 (196)
T PF01081_consen 91 ---------------------------PEVIEYAREYGIPYIPGVMTPTEIMQALEA 120 (196)
T ss_dssp ---------------------------HHHHHHHHHHTSEEEEEESSHHHHHHHHHT
T ss_pred ---------------------------HHHHHHHHHcCCcccCCcCCHHHHHHHHHC
Confidence 224667777788889999999998887764
No 187
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=25.00 E-value=4.4e+02 Score=25.15 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=47.3
Q ss_pred hhhHHHHHHHH-HhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCC------CHHHHHHH---------------
Q 020679 196 WQQKKLRVFCE-KKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGK------SVAQVSLR--------------- 253 (323)
Q Consensus 196 ~~~~~ll~~~~-~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~------s~~q~al~--------------- 253 (323)
.+++.+..++. +.++-++.-+.-. -....|.++|++.+. ++.++...
T Consensus 276 ~RQ~A~~~La~~~vD~miVVGG~nS-----------SNT~rL~eia~~~g~~ty~Ie~~~eL~~~~~i~h~~~~~~~~~t 344 (387)
T PRK13371 276 ERQDAMFSLVEEPLDLMVVIGGYNS-----------SNTTHLQEIAIERGIPSYHIDSPERILSGNSIEHKPLGKELVVT 344 (387)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC-----------ccHHHHHHHHHhcCCCEEEECCHHHcCCccccccccccchhhhh
Confidence 34567788876 5787777633332 245789999998863 67777665
Q ss_pred --HHHhCC--cEEEeCCCCHHHHHHh
Q 020679 254 --WVYQQG--VSLVVKSFNKERMKEN 275 (323)
Q Consensus 254 --~~l~~~--~~~i~g~~~~~~l~en 275 (323)
|..... +.+..|+|+|+.+-+.
T Consensus 345 ~~wl~~~~~~VGITAGASTP~~lI~e 370 (387)
T PRK13371 345 ENWLPEGPVTVGITSGASTPDKVVED 370 (387)
T ss_pred hhhhccCCCEEEEecCCCCCHHHHHH
Confidence 876433 6778999999866543
No 188
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.91 E-value=2.7e+02 Score=23.87 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=40.4
Q ss_pred HHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcC-CCCHHHHHHHHHhCCCCc
Q 020679 107 SLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVS-NFACKKLERLLATAKIPP 185 (323)
Q Consensus 107 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs-~~~~~~l~~~~~~~~~~~ 185 (323)
.+..+|.|++=+.+....-+. .+.+.+ ..+.+.. .+.++.+||. |-+.+.+.++++..++
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~---------------V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~-- 76 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRH---------------QTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSI-- 76 (207)
T ss_pred HHHHcCCCEEEEecCCCCccc---------------CCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCC--
Confidence 345699999988643322111 223333 3333322 3568889986 6678888888876554
Q ss_pred eeecccC
Q 020679 186 AVNQVEL 192 (323)
Q Consensus 186 ~~~q~~~ 192 (323)
+++|+.-
T Consensus 77 d~vQLHG 83 (207)
T PRK13958 77 NTIQLHG 83 (207)
T ss_pred CEEEECC
Confidence 4888653
No 189
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=24.90 E-value=2.1e+02 Score=26.53 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCCCCHHH-----HHHHHHh----CCCCcee----e------cccCChhhhhHHHHHHH
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSNFACKK-----LERLLAT----AKIPPAV----N------QVELNPVWQQKKLRVFC 205 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~-----l~~~~~~----~~~~~~~----~------q~~~~~~~~~~~ll~~~ 205 (323)
..+.++.|+.+.+.++|+.+-+-.|++.+ ++.+... ......- + |-.+. ...-..+++.|
T Consensus 94 ~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~A 172 (325)
T cd01306 94 DPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYA-PANRSELAALA 172 (325)
T ss_pred CccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHH
Confidence 45788999999999999999999998655 1222221 1111100 0 00111 01115689999
Q ss_pred HHhCceEEEecc
Q 020679 206 EKKGIHITAYSP 217 (323)
Q Consensus 206 ~~~gi~via~~~ 217 (323)
+++|+.+.++.-
T Consensus 173 ~~~gl~vasH~d 184 (325)
T cd01306 173 RARGIPLASHDD 184 (325)
T ss_pred HHCCCcEEEecC
Confidence 999999988763
No 190
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=24.47 E-value=1.6e+02 Score=26.58 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCCCCH-----HHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEe
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSNFAC-----KKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAY 215 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~~~~-----~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~ 215 (323)
+...-..|++|++.| +-||.||.. .++++.++..... +.++-+++..|++.|+--++|
T Consensus 94 ~~~~~~fl~~lk~~G---f~GV~NfPTvgliDG~fR~~LEe~Gmg----------y~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 94 FRDMDRFLDELKELG---FSGVQNFPTVGLIDGQFRQNLEETGMG----------YDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp T--HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT------------HHHHHHHHHHHHHTT-EE--E
T ss_pred CCcHHHHHHHHHHhC---CceEEECCcceeeccHHHHHHHhcCCC----------HHHHHHHHHHHHHCCCeeeee
Confidence 345667888888887 678999863 2344555443321 122334555555555555444
No 191
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=24.45 E-value=3.4e+02 Score=21.03 Aligned_cols=65 Identities=8% Similarity=-0.058 Sum_probs=43.1
Q ss_pred CCCceEEeeecCCCCCChhhHHHHHHHHHHHcCC--CcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 020679 80 SRNELFITSKLWLGHAHRQLVLPALQTSLKNLGL--EYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQN 157 (323)
Q Consensus 80 ~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 157 (323)
+|=.+.|+-|++.....+..+++.+.++++.... .-.|++++..+... ..++.++.+.|..|.+
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~--------------~~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFD--------------RATAKQAVAELAQLMA 109 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcc--------------cCCHHHHHHHHHHHHH
Confidence 4555677777665555678888888888875443 24699999987532 2346667777766654
Q ss_pred c
Q 020679 158 L 158 (323)
Q Consensus 158 ~ 158 (323)
.
T Consensus 110 k 110 (120)
T PRK04390 110 K 110 (120)
T ss_pred H
Confidence 4
No 192
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=24.41 E-value=1.4e+02 Score=26.07 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHcCCccEEEcCC----CCHHHHHHHHHhCCCCceeecccCChhhhh--HHHHHHHHHhCceEEEecc
Q 020679 144 DYEAVWEAMEECQNLGLTKSIGVSN----FACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 144 ~~~~~~~~L~~l~~~G~Ir~iGvs~----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~~ 217 (323)
..+++.++|..++ +..|.... +....++.+++..... .|.|++.. .+++...-+.|..++.-++
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 3677888888887 44554433 3344566666655544 45677663 6777777777766665555
Q ss_pred CCCCCCCCC-CCCccC---hHHHHHHHHHcCCCHH
Q 020679 218 LGAKGTRWG-TNRVME---CQVLKEIANARGKSVA 248 (323)
Q Consensus 218 l~~~G~l~~-~~~~~~---~~~l~~ia~~~~~s~~ 248 (323)
-+. |+.-. -...++ .+.+..++++|+++|+
T Consensus 144 sa~-gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAE-GLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ecc-CCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 554 54210 011222 4667778888888764
No 193
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=24.31 E-value=1e+03 Score=26.54 Aligned_cols=92 Identities=13% Similarity=-0.025 Sum_probs=59.8
Q ss_pred HHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH-cCCc--cEEEcCCCCHHHHHHHHHhCCCCc
Q 020679 109 KNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQN-LGLT--KSIGVSNFACKKLERLLATAKIPP 185 (323)
Q Consensus 109 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-~G~I--r~iGvs~~~~~~l~~~~~~~~~~~ 185 (323)
..-|.+.||+-.=. + ..+-++.++.+..+.+ +-.+ --|-+-++.++.++.+++.....+
T Consensus 378 ve~GA~iIDVn~~~-~-----------------~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~ 439 (1178)
T TIGR02082 378 VENGAQILDINVDY-G-----------------MLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKC 439 (1178)
T ss_pred HHCCCCEEEECCCC-C-----------------CCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCC
Confidence 35788999996421 1 1223444444444443 3222 347788888999999999876667
Q ss_pred eeecccCChhh-hhHHHHHHHHHhCceEEEeccC
Q 020679 186 AVNQVELNPVW-QQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 186 ~~~q~~~~~~~-~~~~ll~~~~~~gi~via~~~l 218 (323)
.+|-+..-... +-.++++.|+++|..++.+..-
T Consensus 440 IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~d 473 (1178)
T TIGR02082 440 IVNSISLKDGEERFIETAKLIKEYGAAVVVMAFD 473 (1178)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecC
Confidence 77765543211 2257999999999999998643
No 194
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.12 E-value=4.4e+02 Score=23.26 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEeccCC
Q 020679 148 VWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSPLG 219 (323)
Q Consensus 148 ~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~l~ 219 (323)
-++.+.++. .+.=-+.|=|-++...+..+++....+ ++|+..... .+-..+.+.|+.+|+.++..+.+.
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d--~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~e 237 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALG--ALVLKPALLGGPRALLELAEEARARGIPAVVSSALE 237 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCC--EEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchh
Confidence 345555555 222234455555666666666654443 555444332 223567778888888887765443
No 195
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=24.11 E-value=2.5e+02 Score=25.70 Aligned_cols=149 Identities=16% Similarity=0.152 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHH
Q 020679 98 QLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERL 177 (323)
Q Consensus 98 ~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~ 177 (323)
+.+++.+.+-+++.|+|++=++..-.-..+.+ .. ......+++|++..+++.-. .++..+-..
T Consensus 132 e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~------~~-----~~~~~t~~~l~~al~~~~~~------~~aS~~YA~ 194 (295)
T PF07994_consen 132 EQIREDIRDFKKENGLDRVVVVNVASTERYIP------VI-----PGVHDTLEALEKALDENDPE------ISASMLYAY 194 (295)
T ss_dssp HHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---------C-----CCCCSSHHHHHHHHHTT-TT------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEECCCCCCCCC------CC-----ccccCCHHHHHHHhhcCCCc------CChHHHHHH
Confidence 56778888999999988654443332211111 00 01234678888877765532 122232221
Q ss_pred HHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEe---ccCCCCCCCCCCCCccChHHHHHHHHHcCCCHHHHHHHH
Q 020679 178 LATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAY---SPLGAKGTRWGTNRVMECQVLKEIANARGKSVAQVSLRW 254 (323)
Q Consensus 178 ~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~---~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~s~~q~al~~ 254 (323)
... .-.+.++..--+.......+.+.|+++|+.++.- ++++. +-+++.-++-++|.+.|....+-.++|
T Consensus 195 AAl-~~g~~fvN~tP~~~a~~P~l~ela~~~gvpi~GdD~KT~lAA-------plvlDLirl~~la~r~g~~Gv~~~ls~ 266 (295)
T PF07994_consen 195 AAL-EAGVPFVNGTPSNIADDPALVELAEEKGVPIAGDDGKTPLAA-------PLVLDLIRLAKLALRRGMGGVQEWLSF 266 (295)
T ss_dssp HHH-HTTEEEEE-SSSTTTTSHHHHHHHHHHTEEEEESSBS-HHHH-------HHHHHHHHHHHHHHHTTS-EEHHHHHH
T ss_pred HHH-HCCCCeEeccCccccCCHHHHHHHHHcCCCeecchHhhhhhh-------HHHHHHHHHHHHHHHcCCCChhHHHHH
Confidence 111 1122233222233333468999999999998763 22322 123455678899999999889999999
Q ss_pred HHhCCcEEEeCCCCHHHH
Q 020679 255 VYQQGVSLVVKSFNKERM 272 (323)
Q Consensus 255 ~l~~~~~~i~g~~~~~~l 272 (323)
.+..|.+ =+|......+
T Consensus 267 ffK~P~~-~~g~~~~~~l 283 (295)
T PF07994_consen 267 FFKSPMV-PPGPPQEHDL 283 (295)
T ss_dssp HBSS-T---TTSTT--HH
T ss_pred HhcCCCc-cCCCCCCCcH
Confidence 9998852 2344444333
No 196
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=24.10 E-value=5e+02 Score=25.06 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=51.5
Q ss_pred cccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcC--CccEEEcCC-C-CHHHHHHHHHhCCCCceeecc
Q 020679 115 YIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLG--LTKSIGVSN-F-ACKKLERLLATAKIPPAVNQV 190 (323)
Q Consensus 115 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G--~Ir~iGvs~-~-~~~~l~~~~~~~~~~~~~~q~ 190 (323)
..++.++-.|.. .+-|+.+.+|.+.- .+.-.|=-. . +...++++++....+ ++|+
T Consensus 277 ~~~i~~iEdPl~-------------------~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d--~v~i 335 (425)
T TIGR01060 277 KYPIVSIEDGLS-------------------EEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVAN--SILI 335 (425)
T ss_pred cCCcEEEEcCCC-------------------cccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCC--EEEe
Confidence 346778887742 23466677776664 565555332 2 488888888876544 6666
Q ss_pred cCChh---hhhHHHHHHHHHhCceEEE
Q 020679 191 ELNPV---WQQKKLRVFCEKKGIHITA 214 (323)
Q Consensus 191 ~~~~~---~~~~~ll~~~~~~gi~via 214 (323)
..+.. .+-.++...|+++|+.++.
T Consensus 336 k~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 336 KPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred cccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 65543 3347889999999998664
No 197
>PRK09358 adenosine deaminase; Provisional
Probab=23.89 E-value=5.7e+02 Score=23.46 Aligned_cols=72 Identities=10% Similarity=0.060 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCCC-CHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSNF-ACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
.+...+.++.+++.|.--.+=++.. ....+..+++..+.+ .+-..+.+ ..++++++..+++||.+.. .|..+
T Consensus 181 ~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~--ri~Hg~~l-~~~~~~~~~l~~~gi~v~~-cP~Sn 253 (340)
T PRK09358 181 PSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAE--RIGHGVRA-IEDPALMARLADRRIPLEV-CPTSN 253 (340)
T ss_pred HHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCc--ccchhhhh-ccCHHHHHHHHHcCCeEEE-CCCcc
Confidence 4566777888888886554444432 233455555532222 11111111 1236788999999998753 55543
No 198
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=23.51 E-value=3.9e+02 Score=23.21 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcC----CHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHH
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQ----SEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKN 110 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~Yg----sE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~ 110 (323)
.++..++.+.+.++|..|+=|+..|+ +.+.+....+.. + .+ +.-|....-.+.+...+-++.--.|
T Consensus 135 ~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~---~---~~----~~IKasGGIrt~~~a~~~i~aGA~r 204 (221)
T PRK00507 135 DEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV---G---PR----VGVKASGGIRTLEDALAMIEAGATR 204 (221)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh---C---CC----ceEEeeCCcCCHHHHHHHHHcCcce
Confidence 67888999999999999999999984 455554433322 1 22 3445433334557777777766677
Q ss_pred cCCC
Q 020679 111 LGLE 114 (323)
Q Consensus 111 Lg~d 114 (323)
+||.
T Consensus 205 iGtS 208 (221)
T PRK00507 205 LGTS 208 (221)
T ss_pred EccC
Confidence 7764
No 199
>PRK07534 methionine synthase I; Validated
Probab=23.48 E-value=6.1e+02 Score=23.62 Aligned_cols=209 Identities=12% Similarity=0.082 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcC-C---------H----HHHHHHHH---HHHHcCCCCCCCceEEeeecCCCC---
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQ-S---------E----QPLGEAIA---EALRLGLIKSRNELFITSKLWLGH--- 94 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~Yg-s---------E----~~vG~~l~---~~~~~g~~~~R~~~~i~tK~~~~~--- 94 (323)
.+...++=+..+++|-+.+=|. .|+ | + ++.-.+++ +... . ...+++|+.-+++..
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~Tn-Ty~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~-~---~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTN-SFGGTAARLKLHDAQDRVHELNRAAAEIAREVAD-K---AGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEec-CcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-h---cCCccEEEEecCCCcccc
Confidence 5566666666679999999866 464 2 1 12222222 1110 1 123577888886531
Q ss_pred -----CChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCC
Q 020679 95 -----AHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNF 169 (323)
Q Consensus 95 -----~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~ 169 (323)
.+.+.+.+.....++.|--.-+|++++--. ....++..+++.+++.|+=-.+.++..
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~------------------p~l~E~~a~~~~~~~~~~Pv~vSft~~ 180 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKAGGADVLWVETI------------------SAPEEIRAAAEAAKLAGMPWCGTMSFD 180 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc------------------CCHHHHHHHHHHHHHcCCeEEEEEEEC
Confidence 345567777777777774456999999743 237788888888887776555555442
Q ss_pred ---------CHHHHHHHHHhCCCCceeecccCCh-hhh-hHHHHHHHHHh-CceEEEeccCCCCCCCCCCCCccChHHHH
Q 020679 170 ---------ACKKLERLLATAKIPPAVNQVELNP-VWQ-QKKLRVFCEKK-GIHITAYSPLGAKGTRWGTNRVMECQVLK 237 (323)
Q Consensus 170 ---------~~~~l~~~~~~~~~~~~~~q~~~~~-~~~-~~~ll~~~~~~-gi~via~~~l~~~G~l~~~~~~~~~~~l~ 237 (323)
+...+...++.....++++-+++.. ... ...++.....+ ++.+++|-.- |.. .......
T Consensus 181 ~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNa---G~p----~~~~~~~-- 251 (336)
T PRK07534 181 TAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNA---GIP----KYVDGHI-- 251 (336)
T ss_pred CCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCC---CCc----ccCCCcc--
Confidence 2333444444333344677777764 221 13444444433 4666665432 221 0000000
Q ss_pred HHHHHcCCC---HHHHHHHHHHhCCcEEEeCC--CCHHHHHHhhcccc
Q 020679 238 EIANARGKS---VAQVSLRWVYQQGVSLVVKS--FNKERMKENLDIFD 280 (323)
Q Consensus 238 ~ia~~~~~s---~~q~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~ 280 (323)
.+..+ .++.+-+| +..|..+|=|+ ++|+||++.-++++
T Consensus 252 ----~~~~~p~~~~~~~~~~-~~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 252 ----HYDGTPELMAEYAVLA-RDAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred ----ccCCCHHHHHHHHHHH-HHcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 01112 35556667 45566666444 88999998777665
No 200
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=23.41 E-value=5.7e+02 Score=23.29 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCc-cEEEcCCCCHHHHHHHHHhCCCCceeecccCChh---hhhHHHHHHHHHhCceEEEeccCCC
Q 020679 150 EAMEECQNLGLT-KSIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 150 ~~L~~l~~~G~I-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
+.+..+.+.-.+ -+.|=|-++..++..+++....+ ++|+..... .+-.++.+.|+.+|+.++..+.+.+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d--~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es 268 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRG--ALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFES 268 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCc--eEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccch
Confidence 556666555433 34555666777777777654433 555444332 2236788888899998888766654
No 201
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=23.39 E-value=6.7e+02 Score=24.09 Aligned_cols=109 Identities=9% Similarity=0.098 Sum_probs=59.1
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCC----CcccEEEeeCCCCCCCCCCC
Q 020679 58 IYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGL----EYIDLYLIHFPGSLKPGTGF 133 (323)
Q Consensus 58 ~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~----d~iDl~~lH~p~~~~~~~~~ 133 (323)
.||.++-|-+++++..+.- +.+-++|.|-+.+ +-+-..++...+++.- ..+.++.++.|.....
T Consensus 65 VfGg~~kL~~aI~~~~~~~---~P~~I~V~ttc~~-----~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~---- 132 (429)
T cd03466 65 VYGGEKNLKKGLKNVIEQY---NPEVIGIATTCLS-----ETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGT---- 132 (429)
T ss_pred EECcHHHHHHHHHHHHHhc---CCCEEEEeCCchH-----HHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCccc----
Confidence 5678888889998865432 3444666666532 2222223333333322 2456888888765321
Q ss_pred CCCCCCCCCCcHHHHHHHHHH-HH----HcCCccEEEcCCC--CHHHHHHHHHhCCCCc
Q 020679 134 PFNKEDIVPLDYEAVWEAMEE-CQ----NLGLTKSIGVSNF--ACKKLERLLATAKIPP 185 (323)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~L~~-l~----~~G~Ir~iGvs~~--~~~~l~~~~~~~~~~~ 185 (323)
. ....+.++++|-+ +. +.++|.-||-.+. +.+.+.++++..++.+
T Consensus 133 -----~--~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 133 -----H--VEGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEY 184 (429)
T ss_pred -----H--HHHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCe
Confidence 0 0123334444432 22 2567888874433 3467788888776654
No 202
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=23.33 E-value=6.3e+02 Score=23.81 Aligned_cols=111 Identities=20% Similarity=0.166 Sum_probs=64.1
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCC
Q 020679 58 IYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNK 137 (323)
Q Consensus 58 ~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 137 (323)
.||.|+.+-+++++..+.- +.+-++|.|-+-+. .-.+.+..-+++.-++.+ +.++.+|.|.......
T Consensus 68 V~Gg~~~L~~~i~~~~~~~---~P~~i~v~~tC~~~-~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~------ 134 (406)
T cd01967 68 VFGGEKKLKKAIKEAYERF---PPKAIFVYSTCPTG-LIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQ------ 134 (406)
T ss_pred eeCcHHHHHHHHHHHHHhC---CCCEEEEECCCchh-hhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcc------
Confidence 4678888888888865432 34456677665332 112334444444333443 6889999886533100
Q ss_pred CCCCCCcHHHHHHHHHHHH---------HcCCccEEEcCCCC--HHHHHHHHHhCCCCc
Q 020679 138 EDIVPLDYEAVWEAMEECQ---------NLGLTKSIGVSNFA--CKKLERLLATAKIPP 185 (323)
Q Consensus 138 ~~~~~~~~~~~~~~L~~l~---------~~G~Ir~iGvs~~~--~~~l~~~~~~~~~~~ 185 (323)
......++++|-+.. +++.|.-||..++. ...+.++++..++.+
T Consensus 135 ----~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~ 189 (406)
T cd01967 135 ----SLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRV 189 (406)
T ss_pred ----cHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEE
Confidence 122444555555432 34668889987653 467888888766553
No 203
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=23.24 E-value=4e+02 Score=21.42 Aligned_cols=63 Identities=8% Similarity=0.053 Sum_probs=43.3
Q ss_pred CCCceEEeeecCCCCCChhhHHHHHHHHHHHcC--CCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 020679 80 SRNELFITSKLWLGHAHRQLVLPALQTSLKNLG--LEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQN 157 (323)
Q Consensus 80 ~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 157 (323)
.|=.+.|+-|++. ...+..+++.+.++++.+. ....|++++..+... .++.++...|..+.+
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~---------------~~f~~L~~~l~~~~~ 109 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ---------------PDFLKLLQDFLQQIP 109 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC---------------CCHHHHHHHHHHHHH
Confidence 4666778888754 4557888888888888763 346899999887542 236677666666655
Q ss_pred c
Q 020679 158 L 158 (323)
Q Consensus 158 ~ 158 (323)
+
T Consensus 110 ~ 110 (138)
T PRK00730 110 E 110 (138)
T ss_pred H
Confidence 4
No 204
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=23.05 E-value=4.7e+02 Score=25.09 Aligned_cols=79 Identities=10% Similarity=0.056 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhh---HHHHHHHHHhCceEEEeccCCCC
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ---KKLRVFCEKKGIHITAYSPLGAK 221 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~~l~~~ 221 (323)
...+..-++.+.++.-|....+-.-+...+.+.+...+.+..++..+-||..+- ..+.+.|+++|+-++.=+.++.
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat- 190 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT- 190 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-
Confidence 456778888887777777777776666666666554456677888899988763 6789999999988888888876
Q ss_pred CCC
Q 020679 222 GTR 224 (323)
Q Consensus 222 G~l 224 (323)
+.+
T Consensus 191 P~~ 193 (396)
T COG0626 191 PVL 193 (396)
T ss_pred ccc
Confidence 443
No 205
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=23.04 E-value=7.3e+02 Score=24.39 Aligned_cols=104 Identities=11% Similarity=0.105 Sum_probs=56.6
Q ss_pred CChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcC-CccEEEcCC----C
Q 020679 95 AHRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLG-LTKSIGVSN----F 169 (323)
Q Consensus 95 ~~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~Ir~iGvs~----~ 169 (323)
.+++.+.+.++...++.|+..+ .+...+. ......+.+-++++++.| .--.++++. .
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f---------------~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i 283 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEP---------------TINRKKFQEFCEEIIARNPISVTWGINTRVTDI 283 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEeccc---------------ccCHHHHHHHHHHHHhcCCCCeEEEEecccccc
Confidence 3678899999998888887653 3332111 122455667778888887 323344432 1
Q ss_pred --CHHHHHHHHHhCCCCceeecccCChh--------------hhhHHHHHHHHHhCceEEEeccCC
Q 020679 170 --ACKKLERLLATAKIPPAVNQVELNPV--------------WQQKKLRVFCEKKGIHITAYSPLG 219 (323)
Q Consensus 170 --~~~~l~~~~~~~~~~~~~~q~~~~~~--------------~~~~~ll~~~~~~gi~via~~~l~ 219 (323)
+.+.++.+ ..+++. .+.+.+--. .+..+.+..|+++||.+.+.-.++
T Consensus 284 ~~d~ell~~l-~~aG~~--~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G 346 (497)
T TIGR02026 284 VRDADILHLY-RRAGLV--HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITG 346 (497)
T ss_pred cCCHHHHHHH-HHhCCc--EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 23334443 333332 221111111 111467889999999887655553
No 206
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=22.98 E-value=2.9e+02 Score=19.79 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=38.6
Q ss_pred HHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCChhhhhHHHHHHHHHhCceEEEec
Q 020679 152 MEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 152 L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~ 216 (323)
++++++.|++ .+| ..+..+.++.+....+++--+.+. .-...+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl-~~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSI-VIG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCE-EEc-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 4566667753 233 356666677777666666655555 234778899999999998765
No 207
>COG3150 Predicted esterase [General function prediction only]
Probab=22.98 E-value=2.5e+02 Score=23.61 Aligned_cols=28 Identities=11% Similarity=-0.056 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHcCCccEEEcCCCCH
Q 020679 144 DYEAVWEAMEECQNLGLTKSIGVSNFAC 171 (323)
Q Consensus 144 ~~~~~~~~L~~l~~~G~Ir~iGvs~~~~ 171 (323)
+...+++.+++++++..-+.+|++..+.
T Consensus 41 ~p~~a~~ele~~i~~~~~~~p~ivGssL 68 (191)
T COG3150 41 DPQQALKELEKAVQELGDESPLIVGSSL 68 (191)
T ss_pred CHHHHHHHHHHHHHHcCCCCceEEeecc
Confidence 3678889999999888767676666553
No 208
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=22.86 E-value=5.5e+02 Score=22.89 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHHHHcCCccE-EEcCCC--CHH----HHHHHHHhC-CCCceeecccCChhhhhHHHHHHHHHhCceEEE
Q 020679 143 LDYEAVWEAMEECQNLGLTKS-IGVSNF--ACK----KLERLLATA-KIPPAVNQVELNPVWQQKKLRVFCEKKGIHITA 214 (323)
Q Consensus 143 ~~~~~~~~~L~~l~~~G~Ir~-iGvs~~--~~~----~l~~~~~~~-~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 214 (323)
...+++++.++++++.|.-+. +..+++ ... .++.+.+.. .....+. .+.-...++.+...++.|+..+.
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~---~~~g~~~~e~l~~Lk~aG~~~v~ 138 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTC---ATLGLLDPEQAKRLKDAGLDYYN 138 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEE---ecCCCCCHHHHHHHHHcCCCEEE
Confidence 447889999999998885442 333222 222 233333221 1222121 22212247888999999988876
Q ss_pred ec
Q 020679 215 YS 216 (323)
Q Consensus 215 ~~ 216 (323)
.+
T Consensus 139 i~ 140 (296)
T TIGR00433 139 HN 140 (296)
T ss_pred Ec
Confidence 55
No 209
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=22.60 E-value=3.5e+02 Score=27.07 Aligned_cols=46 Identities=24% Similarity=0.214 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceee
Q 020679 143 LDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVN 188 (323)
Q Consensus 143 ~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~ 188 (323)
.+..++.+-+.+.++..+|+.||+-.+....+.+.++..+++++.+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i 455 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGI 455 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeec
Confidence 3467788888888899999999999988888888888877775443
No 210
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=22.59 E-value=4.4e+02 Score=24.81 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=60.2
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcC-------CCCHHHHHHHHHhCC-CCceeecc
Q 020679 119 YLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVS-------NFACKKLERLLATAK-IPPAVNQV 190 (323)
Q Consensus 119 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs-------~~~~~~l~~~~~~~~-~~~~~~q~ 190 (323)
+-||.|+........|.+.. ...++++++.+.-.+... +.|-+- |-+.++.+++++... ++..++-+
T Consensus 216 iSLHa~nd~lR~~L~Pink~----~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLI 290 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKK----YPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLI 290 (349)
T ss_pred EecCCCCHHHHhhhhccccC----CCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEe
Confidence 67898876444332222211 347888888888776654 544332 234666666666543 55578999
Q ss_pred cCChhhhh----------HHHHHHHHHhCceEEEeccCCC
Q 020679 191 ELNPVWQQ----------KKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 191 ~~~~~~~~----------~~ll~~~~~~gi~via~~~l~~ 220 (323)
+||+.... ....+...++||.+..+..-+.
T Consensus 291 P~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 291 PYNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred ecCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 99987532 3345566678899988877754
No 211
>PRK09875 putative hydrolase; Provisional
Probab=22.52 E-value=5.9e+02 Score=23.17 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=10.5
Q ss_pred HHHHHHHcCCCEEecCCCc
Q 020679 41 SVVHAIEVGYRHFDTAAIY 59 (323)
Q Consensus 41 ~l~~A~~~Gin~~DTA~~Y 59 (323)
+.+.+-+.|+|.+=++..|
T Consensus 66 l~~is~~tgv~Iv~~TG~y 84 (292)
T PRK09875 66 MLDVMRETGINVVACTGYY 84 (292)
T ss_pred HHHHHHHhCCcEEEcCcCC
Confidence 4444455666666555555
No 212
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.49 E-value=6.3e+02 Score=23.44 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=41.3
Q ss_pred HHHHcCCccEEEcCCCCHHHHHHHHHhC-----CCCceeecccCChhhhhHHHHHHHHHhCceEEEec
Q 020679 154 ECQNLGLTKSIGVSNFACKKLERLLATA-----KIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 154 ~l~~~G~Ir~iGvs~~~~~~l~~~~~~~-----~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~ 216 (323)
..-+.|=+..||....+++++++.++.. +-++-++-+.+.......+.++.|.++++.++..+
T Consensus 22 AVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 22 AVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred HHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 3446688889998888888887776432 23334443333221113578999999999999754
No 213
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=22.41 E-value=3.7e+02 Score=24.35 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCCCC------------HHHHHHHHHhCC-CCceeecccCChhhhh-HHHHHHHHHhCc
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSNFA------------CKKLERLLATAK-IPPAVNQVELNPVWQQ-KKLRVFCEKKGI 210 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~~~------------~~~l~~~~~~~~-~~~~~~q~~~~~~~~~-~~ll~~~~~~gi 210 (323)
....++...+++++|++-.||=+.+. .+.++.+++.+. .++.+...-.+.-..+ .++-.++++.|+
T Consensus 106 m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 106 MRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 34566778899999999888877753 223444555443 4433332233332323 678888999886
No 214
>PRK05588 histidinol-phosphatase; Provisional
Probab=22.35 E-value=5.3e+02 Score=22.57 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHcCCCEEecCCCcC--C--H----HHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHH
Q 020679 35 TEVVKESVVHAIEVGYRHFDTAAIYQ--S--E----QPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQT 106 (323)
Q Consensus 35 ~~~~~~~l~~A~~~Gin~~DTA~~Yg--s--E----~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~ 106 (323)
.....+.++.|.+.|+..+ .+++.. . . .-+-+.+++.-+ . +..+|++.--++ ..++ ....+++
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~--~--~~~~I~~GiE~~---~~~~-~~~~~~~ 85 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSK--Y--RNNKLLLGIELG---MEKD-LIEENKE 85 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHH--H--hcCCcceEEEec---ccCC-CHHHHHH
Confidence 3457789999999999998 776631 0 0 011122222100 0 223455555553 2222 3566677
Q ss_pred HHHHcCCCcccEEEeeCCC
Q 020679 107 SLKNLGLEYIDLYLIHFPG 125 (323)
Q Consensus 107 SL~~Lg~d~iDl~~lH~p~ 125 (323)
.|++...|++ +.-+|+.+
T Consensus 86 ~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 86 LINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHhhCCCCeE-EEeEEeeC
Confidence 8887777777 78889864
No 215
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=22.30 E-value=2.1e+02 Score=27.28 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcC-CccEEEcCCC---CHHHHHHHHHhCCC--CceeecccCChhhhhHHHHHHHHHhCceEEEecc
Q 020679 145 YEAVWEAMEECQNLG-LTKSIGVSNF---ACKKLERLLATAKI--PPAVNQVELNPVWQQKKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G-~Ir~iGvs~~---~~~~l~~~~~~~~~--~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~~ 217 (323)
-..+++.+..|..+| .|.++.|... +.+++++++....+ .+..+..+.....+=.++-..|+++|+.+..=.+
T Consensus 101 H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAv 179 (386)
T COG1104 101 HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179 (386)
T ss_pred cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehh
Confidence 456889999997778 8999999875 46777777663321 1112223333333348899999999976655433
No 216
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.26 E-value=3.7e+02 Score=25.97 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCccEEEcCCCCHHHHHHHHHhC------CCCceeecccCChhhh--hHHHHHHHHHhCceEEEeccC
Q 020679 150 EAMEECQNLGLTKSIGVSNFACKKLERLLATA------KIPPAVNQVELNPVWQ--QKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 150 ~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~------~~~~~~~q~~~~~~~~--~~~ll~~~~~~gi~via~~~l 218 (323)
+-...+-+.|-+..+|..+.+++++++.++.. +-++-+|-+ .++-.+ +.++++.|.++||.++..+.+
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa~ 104 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASAF 104 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEeccc
Confidence 44556677899999999999999988776543 223334432 222222 367899999999998876653
No 217
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=22.24 E-value=6.5e+02 Score=23.50 Aligned_cols=74 Identities=18% Similarity=0.075 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEcCC-----CCHHHHHHHHHh---CCCCce-eecccCChhhhhHHHHHHHHHhCceEEEe
Q 020679 145 YEAVWEAMEECQNLGLTKSIGVSN-----FACKKLERLLAT---AKIPPA-VNQVELNPVWQQKKLRVFCEKKGIHITAY 215 (323)
Q Consensus 145 ~~~~~~~L~~l~~~G~Ir~iGvs~-----~~~~~l~~~~~~---~~~~~~-~~q~~~~~~~~~~~ll~~~~~~gi~via~ 215 (323)
.+.+.+.++.+.....++.|=+.. .+.+.++.+.+. ....+. -+-++.|+..-..+.+...++.|+.-+..
T Consensus 36 ~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsi 115 (374)
T PRK05799 36 IKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKKLNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSI 115 (374)
T ss_pred HHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEE
Confidence 344455554443334465554432 245555555432 222211 12334444434578999999999877665
Q ss_pred ccC
Q 020679 216 SPL 218 (323)
Q Consensus 216 ~~l 218 (323)
+.-
T Consensus 116 Gvq 118 (374)
T PRK05799 116 GLQ 118 (374)
T ss_pred ECc
Confidence 554
No 218
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.15 E-value=7e+02 Score=24.23 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=29.8
Q ss_pred CCCceeeCCCCCccCcccccccccCCCCChHHHHHHHHHHHHcCCCEEecC
Q 020679 6 SIPEAPLGSTGKTIPLVGFGTAQFPFGAATEVVKESVVHAIEVGYRHFDTA 56 (323)
Q Consensus 6 ~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA 56 (323)
+-|-+.+.....++--..|||-- . ..+...+.....+.|+...|..
T Consensus 10 ~~~~~~~~~~~~~~~i~t~GC~~----N-~~dse~~~~~l~~~G~~~~~~~ 55 (459)
T PRK14338 10 PAPDRDATPRERRYYVWTVGCQM----N-VSDSERLEAALQGVGYSPAERP 55 (459)
T ss_pred CCcccccCCCCCEEEEEecCCCC----C-HHHHHHHHHHHHHCcCEECCCc
Confidence 34445554444567778899863 2 5667677776678998877653
No 219
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=22.14 E-value=2.4e+02 Score=24.75 Aligned_cols=68 Identities=15% Similarity=0.269 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHc----CCccEEEcCCC--CHHHHHHHHHhCCCCceeecccC---ChhhhhHHHHHHHHHhCceEEE
Q 020679 145 YEAVWEAMEECQNL----GLTKSIGVSNF--ACKKLERLLATAKIPPAVNQVEL---NPVWQQKKLRVFCEKKGIHITA 214 (323)
Q Consensus 145 ~~~~~~~L~~l~~~----G~Ir~iGvs~~--~~~~l~~~~~~~~~~~~~~q~~~---~~~~~~~~ll~~~~~~gi~via 214 (323)
.++.+++|.+|++. |-=-.|=.-.| +.+.++.+.+....+ ++|+.- .-.+..-+.+-+|+++|++...
T Consensus 118 r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~d--mVQIKtPDLGgi~ntieAvlyCk~~gvgaY~ 194 (248)
T PF07476_consen 118 REAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAAD--MVQIKTPDLGGINNTIEAVLYCKEHGVGAYL 194 (248)
T ss_dssp HHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SS--EEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcC--EEEecCCCccchhhHHHHHHHHHhcCCceee
Confidence 56677776665554 33223333333 577888888876655 888753 2222335678899999999765
No 220
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=22.02 E-value=2.1e+02 Score=23.05 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=55.6
Q ss_pred ChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH--cCCccEEEcCCCCHHH
Q 020679 96 HRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQN--LGLTKSIGVSNFACKK 173 (323)
Q Consensus 96 ~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~G~Ir~iGvs~~~~~~ 173 (323)
+-+.+.+.+++-.+.+|. .++++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.
T Consensus 25 tl~di~~~~~~~a~~~g~-~v~~~QSN~---------------------EGelId~i~~a~~~~dgiIINpga~THtSiA 82 (141)
T TIGR01088 25 TLEEIVEIIETFAAQLNV-ELEFFQSNS---------------------EGQLIDKIHEAEGQYDGIIINPGALTHTSVA 82 (141)
T ss_pred CHHHHHHHHHHHHHHcCC-EEEEEeeCc---------------------HHHHHHHHHhccccCCEEEEcChHHhhhHHH
Confidence 458899999999999986 355555432 3567787777754 3666666777888888
Q ss_pred HHHHHHhCCCCceeecccCChhhhhH
Q 020679 174 LERLLATAKIPPAVNQVELNPVWQQK 199 (323)
Q Consensus 174 l~~~~~~~~~~~~~~q~~~~~~~~~~ 199 (323)
+..++.....+ ++.+-++....++
T Consensus 83 l~DAl~~~~~P--~vEVHiSNi~aRE 106 (141)
T TIGR01088 83 LRDALAAVSLP--VVEVHLSNVHARE 106 (141)
T ss_pred HHHHHHcCCCC--EEEEEcCCccccc
Confidence 88888877776 6666666554433
No 221
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=21.96 E-value=6.6e+02 Score=23.47 Aligned_cols=72 Identities=21% Similarity=0.118 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHHcCCccEEEcCCCC---HHHHHHHHHhC---CCCceeecccCChhhhhHHHHHHHHHhCceEEEec
Q 020679 143 LDYEAVWEAMEECQNLGLTKSIGVSNFA---CKKLERLLATA---KIPPAVNQVELNPVWQQKKLRVFCEKKGIHITAYS 216 (323)
Q Consensus 143 ~~~~~~~~~L~~l~~~G~Ir~iGvs~~~---~~~l~~~~~~~---~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~ 216 (323)
++.+++.+.++++.+.| +..|.++.=. ..++.++++.. .+.. .+.. |-..-..+.++...+.|+..+..|
T Consensus 46 ~~~e~~~~ii~~~~~~g-~~~v~~~GGEPll~~~~~~il~~~~~~g~~~-~i~T--NG~ll~~~~~~~L~~~g~~~v~iS 121 (378)
T PRK05301 46 LSTEEWIRVLREARALG-ALQLHFSGGEPLLRKDLEELVAHARELGLYT-NLIT--SGVGLTEARLAALKDAGLDHIQLS 121 (378)
T ss_pred CCHHHHHHHHHHHHHcC-CcEEEEECCccCCchhHHHHHHHHHHcCCcE-EEEC--CCccCCHHHHHHHHHcCCCEEEEE
Confidence 45677777777777776 5677766522 22344444332 2221 2222 222223466777778777665555
Q ss_pred cC
Q 020679 217 PL 218 (323)
Q Consensus 217 ~l 218 (323)
.-
T Consensus 122 ld 123 (378)
T PRK05301 122 FQ 123 (378)
T ss_pred ec
Confidence 44
No 222
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=21.59 E-value=4.1e+02 Score=20.95 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCCCEEecC
Q 020679 39 KESVVHAIEVGYRHFDTA 56 (323)
Q Consensus 39 ~~~l~~A~~~Gin~~DTA 56 (323)
...+..+++.|+|+||.=
T Consensus 31 ~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 31 VEGYIQALDHGCRCVELD 48 (135)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 457788999999999753
No 223
>PF14502 HTH_41: Helix-turn-helix domain
Probab=21.54 E-value=1.7e+02 Score=18.88 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=24.7
Q ss_pred hHHHHHHHHHcCCC--HHHHHHHHHHhCCcEEE
Q 020679 233 CQVLKEIANARGKS--VAQVSLRWVYQQGVSLV 263 (323)
Q Consensus 233 ~~~l~~ia~~~~~s--~~q~al~~~l~~~~~~i 263 (323)
.+.+.+++++++++ ..|-||+++-..+.+.+
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEEe
Confidence 35688999999876 79999999998885443
No 224
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.47 E-value=4.4e+02 Score=21.32 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHH-HcCCCEEecCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHcCC
Q 020679 35 TEVVKESVVHAI-EVGYRHFDTAAIYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNLGL 113 (323)
Q Consensus 35 ~~~~~~~l~~A~-~~Gin~~DTA~~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~Lg~ 113 (323)
.+.-.+++.+|+ +.|+..+.+.-.=-.|+++-.|+.+ .-+-+.||+--+ ........+-+.|+..|.
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--------dv~vIgvSsl~g----~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--------DVDVIGVSSLDG----GHLTLVPGLVEALREAGV 92 (143)
T ss_pred cccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--------CCCEEEEEeccc----hHHHHHHHHHHHHHHhCC
Confidence 344567888888 7788888766444358888888763 334444444432 336677788888999998
Q ss_pred CcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHH
Q 020679 114 EYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLL 178 (323)
Q Consensus 114 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~ 178 (323)
+.+= +++-... ..++ +.+|++.|--+.++-.+--.+.+..++
T Consensus 93 ~~i~-v~~GGvi------------------p~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~ 134 (143)
T COG2185 93 EDIL-VVVGGVI------------------PPGD----YQELKEMGVDRIFGPGTPIEEALSDLL 134 (143)
T ss_pred cceE-EeecCcc------------------Cchh----HHHHHHhCcceeeCCCCCHHHHHHHHH
Confidence 8654 2333221 1222 778888898888888665444444443
No 225
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=21.36 E-value=1.8e+02 Score=23.04 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCccEEEcC
Q 020679 101 LPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQNLGLTKSIGVS 167 (323)
Q Consensus 101 ~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~Ir~iGvs 167 (323)
+..+.+.|+.+....+|.++++..++... ...++...++.|.+.-.|+-+-+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R--------------~~~d~~~~~~~l~~~~gv~l~~~~ 106 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGR--------------NYLKVGLYMEILFPKKGVRFIAIN 106 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhcc--------------CHHHHHHHHHHHHhhcCcEEEEec
Confidence 34566666666677899999998877643 356777888888877344555443
No 226
>smart00642 Aamy Alpha-amylase domain.
Probab=21.32 E-value=1.7e+02 Score=24.06 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCc-eeecc--cCChhhhhHHHHHHHHHhCceEEEeccCCC
Q 020679 144 DYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPP-AVNQV--ELNPVWQQKKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 144 ~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~-~~~q~--~~~~~~~~~~ll~~~~~~gi~via~~~l~~ 220 (323)
++.++.+.|..|++.| |.+|=++-........ .......+ ...++ .|.-...-+.+++.|+++||.|+.=-++..
T Consensus 17 ~~~gi~~~l~yl~~lG-~~~I~l~Pi~~~~~~~-~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 17 DLQGIIEKLDYLKDLG-VTAIWLSPIFESPQGY-PSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CHHHHHHHHHHHHHCC-CCEEEECcceeCCCCC-CCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 4888999999999887 6666555432100000 00001111 11111 111111227899999999999998777644
No 227
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.30 E-value=7.5e+02 Score=23.86 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=60.5
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCCCCceEEeeecCCCCCChhhHHHHHHHHHHHc-CCCcccEEEeeCCCCCCCCCCCCCC
Q 020679 58 IYQSEQPLGEAIAEALRLGLIKSRNELFITSKLWLGHAHRQLVLPALQTSLKNL-GLEYIDLYLIHFPGSLKPGTGFPFN 136 (323)
Q Consensus 58 ~YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~le~SL~~L-g~d~iDl~~lH~p~~~~~~~~~~~~ 136 (323)
.||.++.+-+++++..+.- +.+-++|.|-+-+.-. .+.+..-+++.-++. ...-+.++.++.|+....
T Consensus 72 VfGg~~~L~~~I~~~~~~~---~P~~I~V~ttC~~eiI-GDDi~~v~~~~~~e~p~~~~~pvi~v~tpgf~g~------- 140 (432)
T TIGR01285 72 ILGGDEHIEEAIDTLCQRN---KPKAIGLLSTGLTETR-GEDIARVVRQFREKHPQHKGTAVVTVNTPDFKGS------- 140 (432)
T ss_pred EECcHHHHHHHHHHHHHhc---CCCEEEEeCCCccccc-ccCHHHHHHHHHhhcccccCCeEEEecCCCcCCc-------
Confidence 5788888888888875532 4556777777643211 122222222222221 011356788887765321
Q ss_pred CCCCCCCcHHHHHHHHH-HHH--------HcCCccEEEcCCC---CHHHHHHHHHhCCCCc
Q 020679 137 KEDIVPLDYEAVWEAME-ECQ--------NLGLTKSIGVSNF---ACKKLERLLATAKIPP 185 (323)
Q Consensus 137 ~~~~~~~~~~~~~~~L~-~l~--------~~G~Ir~iGvs~~---~~~~l~~~~~~~~~~~ 185 (323)
. ......++++|. .+. +.++|.-||-++. +.+.++++++..++.+
T Consensus 141 --~--~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~ 197 (432)
T TIGR01285 141 --L--EDGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKP 197 (432)
T ss_pred --h--HHHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCce
Confidence 0 112344444443 222 2457888886654 3566778788766654
No 228
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=21.21 E-value=2.4e+02 Score=22.71 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=56.1
Q ss_pred ChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH--cCCccEEEcCCCCHHH
Q 020679 96 HRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQN--LGLTKSIGVSNFACKK 173 (323)
Q Consensus 96 ~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~G~Ir~iGvs~~~~~~ 173 (323)
+-+.+.+.+++-.+.+|. .++++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.
T Consensus 25 tl~~i~~~l~~~a~~~g~-~v~~~QSN~---------------------Egelid~I~~a~~~~dgiIINpga~THtSvA 82 (140)
T cd00466 25 TLADIEALLRELAAELGV-EVEFFQSNH---------------------EGELIDWIHEARDGADGIIINPGAYTHTSIA 82 (140)
T ss_pred CHHHHHHHHHHHHHHcCC-EEEEEeeCc---------------------HHHHHHHHHHhhccCcEEEEcchHHHHHHHH
Confidence 458899999999898986 466665442 3567777777754 4666666777788888
Q ss_pred HHHHHHhCCCCceeecccCChhhhh
Q 020679 174 LERLLATAKIPPAVNQVELNPVWQQ 198 (323)
Q Consensus 174 l~~~~~~~~~~~~~~q~~~~~~~~~ 198 (323)
+..++.....+ ++.+-++..+.+
T Consensus 83 i~DAl~~~~~P--~VEVHiSNi~aR 105 (140)
T cd00466 83 LRDALAAVSIP--VIEVHISNIHAR 105 (140)
T ss_pred HHHHHHcCCCC--EEEEecCCcccc
Confidence 88888887776 666666555443
No 229
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=21.11 E-value=4.9e+02 Score=23.61 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=57.1
Q ss_pred HHHcCCCcccEEEeeC--CCCCCCCCCCCCCCCCCCCCcHHHH----HHHHHHHHHcCCccEEEcCCCCHH-------HH
Q 020679 108 LKNLGLEYIDLYLIHF--PGSLKPGTGFPFNKEDIVPLDYEAV----WEAMEECQNLGLTKSIGVSNFACK-------KL 174 (323)
Q Consensus 108 L~~Lg~d~iDl~~lH~--p~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~l~~~G~Ir~iGvs~~~~~-------~l 174 (323)
+.-++-..+|+..+.. +... ..+.. -+.+.++.++--=|++|+.+.++. .+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~----------------~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~ 118 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAI----------------IPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEEL 118 (293)
T ss_pred HhhhcccccceEEeeccccccc----------------hHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHH
Confidence 6777888889888883 1111 01111 357778887778889999988754 34
Q ss_pred HHHHHhCCCCceeecccCChh-------hhh-HHHHHHHHHhCceEEEeccCC
Q 020679 175 ERLLATAKIPPAVNQVELNPV-------WQQ-KKLRVFCEKKGIHITAYSPLG 219 (323)
Q Consensus 175 ~~~~~~~~~~~~~~q~~~~~~-------~~~-~~ll~~~~~~gi~via~~~l~ 219 (323)
++.+...++. ++.+++. .+. ..+++.|.++|+.++.+....
T Consensus 119 er~v~~~gf~----g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 119 ERRVRELGFV----GVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred HHHHHhcCce----EEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4444433322 2222222 122 579999999999999976554
No 230
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=20.96 E-value=6.8e+02 Score=24.58 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=62.7
Q ss_pred ChhhHHHHHHHHHHHcCCCcccEEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH----cCCccEEEcC--CC
Q 020679 96 HRQLVLPALQTSLKNLGLEYIDLYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQN----LGLTKSIGVS--NF 169 (323)
Q Consensus 96 ~~~~i~~~le~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~----~G~Ir~iGvs--~~ 169 (323)
+.+.|.+.++. +...|...+-++.=..|. ...++.+.+.++.+++ .|.++.++++ ..
T Consensus 116 s~EEI~~ea~~-~~~~G~~~i~LvsGe~p~----------------~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~l 178 (469)
T PRK09613 116 TQEEIREEVKA-LEDMGHKRLALVAGEDPP----------------NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPT 178 (469)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEEeCCCCC----------------CCCHHHHHHHHHHHHHhccccCcceeeEEEeecC
Confidence 46778887775 466887776553111111 1236667777777775 5777766664 35
Q ss_pred CHHHHHHHHHhCCCCceeecccCChh--------------hhhHHHHHHHHHhCceEEEeccC
Q 020679 170 ACKKLERLLATAKIPPAVNQVELNPV--------------WQQKKLRVFCEKKGIHITAYSPL 218 (323)
Q Consensus 170 ~~~~l~~~~~~~~~~~~~~q~~~~~~--------------~~~~~ll~~~~~~gi~via~~~l 218 (323)
+.++++++.+.+--...++|=-||.- ...-+.++.+++.|+.-+..+.+
T Consensus 179 t~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 179 TVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 67888888776533333455444321 11235688899999875544444
No 231
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.72 E-value=6.3e+02 Score=22.77 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=35.4
Q ss_pred CCceeecccCChhhhh--HHHHHHHHHhCceEEEeccCCCCCCCCCCCCccChHHHHHHHHHcCC
Q 020679 183 IPPAVNQVELNPVWQQ--KKLRVFCEKKGIHITAYSPLGAKGTRWGTNRVMECQVLKEIANARGK 245 (323)
Q Consensus 183 ~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ia~~~~~ 245 (323)
--|.+.+.-||+..+. +..++.|++.|+.=+. .-.-+......+...|++||+
T Consensus 94 ~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGli----------vpDLP~ee~~~~~~~~~~~gi 148 (265)
T COG0159 94 KVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLL----------VPDLPPEESDELLKAAEKHGI 148 (265)
T ss_pred CCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEE----------eCCCChHHHHHHHHHHHHcCC
Confidence 3467788889997664 6788999998864222 111223345678888888875
No 232
>PRK08508 biotin synthase; Provisional
Probab=20.63 E-value=5.4e+02 Score=23.04 Aligned_cols=71 Identities=14% Similarity=-0.039 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHHHcCCccEEEc-CCC-----CHHHHHHHHHhCC-CCcee-ecccCChhhhhHHHHHHHHHhCceEEE
Q 020679 143 LDYEAVWEAMEECQNLGLTKSIGV-SNF-----ACKKLERLLATAK-IPPAV-NQVELNPVWQQKKLRVFCEKKGIHITA 214 (323)
Q Consensus 143 ~~~~~~~~~L~~l~~~G~Ir~iGv-s~~-----~~~~l~~~~~~~~-~~~~~-~q~~~~~~~~~~~ll~~~~~~gi~via 214 (323)
.+.+++++...++++.|-.+..=+ |.. ..+.+.++++... ..|.+ +-.... ....+.+...++.|+.-+.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G--~~~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNG--TASVEQLKELKKAGIFSYN 117 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCC--CCCHHHHHHHHHcCCCEEc
Confidence 568999999999998887554211 222 2333333333221 10111 111111 2246778888888886665
Q ss_pred e
Q 020679 215 Y 215 (323)
Q Consensus 215 ~ 215 (323)
.
T Consensus 118 ~ 118 (279)
T PRK08508 118 H 118 (279)
T ss_pred c
Confidence 4
No 233
>PF11181 YflT: Heat induced stress protein YflT
Probab=20.58 E-value=1.7e+02 Score=21.96 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCceEEeee
Q 020679 59 YQSEQPLGEAIAEALRLGLIKSRNELFITSK 89 (323)
Q Consensus 59 YgsE~~vG~~l~~~~~~g~~~~R~~~~i~tK 89 (323)
|.+++-+-.++.++.++|. ..++++|.||
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy--~~ddI~Vva~ 34 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGY--SEDDIYVVAK 34 (103)
T ss_pred ECCHHHHHHHHHHHHHcCC--CcccEEEEEc
Confidence 4466667778888878898 8999999998
No 234
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.51 E-value=6e+02 Score=24.11 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=57.9
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH-HcCC---ccEEEcCCC--CHHHHHH---HHHhCC-CCcee
Q 020679 118 LYLIHFPGSLKPGTGFPFNKEDIVPLDYEAVWEAMEECQ-NLGL---TKSIGVSNF--ACKKLER---LLATAK-IPPAV 187 (323)
Q Consensus 118 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~~G~---Ir~iGvs~~--~~~~l~~---~~~~~~-~~~~~ 187 (323)
.+-||.++......-.|.+ ...+++++++++.+.. +.|+ |+++=+.++ +.+.+++ ++.... ....+
T Consensus 241 avSLha~d~e~R~~l~p~n----~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~V 316 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVN----TRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHV 316 (373)
T ss_pred EEEeCCCCHHHHHHhcCcc----cCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEE
Confidence 3678988753321111100 0134788999988776 4464 455545543 3444444 444331 13467
Q ss_pred ecccCChhhh----h------HHHHHHHHHhCceEEEeccCCC
Q 020679 188 NQVELNPVWQ----Q------KKLRVFCEKKGIHITAYSPLGA 220 (323)
Q Consensus 188 ~q~~~~~~~~----~------~~ll~~~~~~gi~via~~~l~~ 220 (323)
+-++||+... . ....+..+++||.+..+...+.
T Consensus 317 NLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 317 NLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred EEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 8888988532 1 3567778899999999888764
No 235
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=20.50 E-value=4.9e+02 Score=21.42 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=51.2
Q ss_pred CccEEEcCCCCHHHHH------HHHHhC-CCCceeecccCChhhh----------h-----HHHHHHHHHhCceEEEecc
Q 020679 160 LTKSIGVSNFACKKLE------RLLATA-KIPPAVNQVELNPVWQ----------Q-----KKLRVFCEKKGIHITAYSP 217 (323)
Q Consensus 160 ~Ir~iGvs~~~~~~l~------~~~~~~-~~~~~~~q~~~~~~~~----------~-----~~ll~~~~~~gi~via~~~ 217 (323)
.|...|+++.+..++. ..+... ..+.+++++..|-... + ..+++.++++++.++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 5677788888766532 333322 3455566665443221 1 4688889999999998887
Q ss_pred CCCCCCCCCC--CCcc--ChHHHHHHHHHcCCCH
Q 020679 218 LGAKGTRWGT--NRVM--ECQVLKEIANARGKSV 247 (323)
Q Consensus 218 l~~~G~l~~~--~~~~--~~~~l~~ia~~~~~s~ 247 (323)
......-.+. ...+ -.+.++++|+++++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 6431111010 0011 1467888999988753
No 236
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.30 E-value=2.3e+02 Score=25.44 Aligned_cols=52 Identities=27% Similarity=0.297 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHHHcCCccEEEcCCCCHHHHHHHHHhCCCCceeecccCCh
Q 020679 143 LDYEAVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNP 194 (323)
Q Consensus 143 ~~~~~~~~~L~~l~~~G~Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~ 194 (323)
..++.+.+.++.+.+.|+.--||...|+.++++.+-+....-+.+.--++++
T Consensus 77 T~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSi 128 (266)
T COG0289 77 TTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSL 128 (266)
T ss_pred CCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccchH
Confidence 3467899999999999999999999999999887766655444454444444
No 237
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.04 E-value=4e+02 Score=20.29 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHhCceEEEe
Q 020679 197 QQKKLRVFCEKKGIHITAY 215 (323)
Q Consensus 197 ~~~~ll~~~~~~gi~via~ 215 (323)
.++++.++|+++|+.++.-
T Consensus 90 ~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 90 ESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp --HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHcCCEEEeC
Confidence 3578899999999998853
No 238
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=20.04 E-value=8e+02 Score=23.73 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHc----CCccEEEcCC-----CCHHHHHHHHHhCC----CCc-eeecccCChhhhhHHHHHHHHHhCce
Q 020679 146 EAVWEAMEECQNL----GLTKSIGVSN-----FACKKLERLLATAK----IPP-AVNQVELNPVWQQKKLRVFCEKKGIH 211 (323)
Q Consensus 146 ~~~~~~L~~l~~~----G~Ir~iGvs~-----~~~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~ll~~~~~~gi~ 211 (323)
+.+.+.++...+. -.|..|=+.. .+.+++.++++... +.. .-+-++.|+..-..+.+...++.|+.
T Consensus 84 ~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~ 163 (453)
T PRK09249 84 DALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFN 163 (453)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCC
Confidence 4455555544432 2466663322 34677777665432 111 12334455544457899999999988
Q ss_pred EEEeccCC
Q 020679 212 ITAYSPLG 219 (323)
Q Consensus 212 via~~~l~ 219 (323)
-+..+.-+
T Consensus 164 risiGvqS 171 (453)
T PRK09249 164 RLSLGVQD 171 (453)
T ss_pred EEEECCCC
Confidence 77766554
Done!