BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020680
         (323 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 31.6 bits (70), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 13/210 (6%)

Query: 39  ESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNV-IVGFDFGLLLGM 97
           E+  L  +  P + + +A   M  +    AG +  I++AA+SIA ++ +    FG  +G+
Sbjct: 10  EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG--VGL 67

Query: 98  ASALETLCGQAFGAKRYYMLGVYMQRSWIXXXXXXXXXXXXXXXASPVLKLLGQPDDVAE 157
             AL  +  Q  GA R + +   + +  I                  +++ +   + +A 
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127

Query: 158 LS-GMVS--IWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFV--- 211
            + G +   I+ +P +  F     L+ F            +  + LL++I ++W+FV   
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQ---ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGK 184

Query: 212 -NRMQLGVIGTAATLNFSWWILVFGLFGYV 240
               +LG +G        +WI++  L  Y+
Sbjct: 185 FGAPELGGVGCGVATAIVYWIMLLLLLFYI 214


>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
          Length = 921

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 276 LENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMI 314
           LENWYY   +++ G  Q    AVD  +  +++N    MI
Sbjct: 373 LENWYYLYQVTVNGTTQ---TAVDPYARAISVNATRGMI 408


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,918,454
Number of Sequences: 62578
Number of extensions: 321723
Number of successful extensions: 678
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 4
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)