Query 020680
Match_columns 323
No_of_seqs 220 out of 1841
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 3E-40 6.4E-45 303.5 35.1 285 36-323 12-301 (455)
2 PRK10367 DNA-damage-inducible 100.0 3.7E-37 8E-42 282.8 35.8 283 37-323 5-292 (441)
3 PRK00187 multidrug efflux prot 100.0 6.9E-37 1.5E-41 283.3 36.9 286 35-323 4-296 (464)
4 PRK10189 MATE family multidrug 100.0 3.8E-36 8.2E-41 278.6 35.5 287 34-323 22-319 (478)
5 PRK09575 vmrA multidrug efflux 100.0 7.4E-35 1.6E-39 269.2 34.8 286 36-323 7-295 (453)
6 PRK01766 multidrug efflux prot 100.0 9.9E-34 2.2E-38 262.5 36.1 287 33-322 4-298 (456)
7 TIGR00797 matE putative efflux 100.0 8.6E-29 1.9E-33 221.2 34.1 271 49-322 1-275 (342)
8 KOG1347 Uncharacterized membra 100.0 1.6E-27 3.6E-32 217.9 29.7 290 33-323 20-309 (473)
9 PRK00187 multidrug efflux prot 99.9 1.8E-24 3.8E-29 200.6 27.3 208 34-242 229-443 (464)
10 PRK01766 multidrug efflux prot 99.9 1.6E-23 3.4E-28 194.3 26.9 209 34-243 232-442 (456)
11 PRK10189 MATE family multidrug 99.9 4.2E-23 9.1E-28 191.6 29.2 213 34-247 252-466 (478)
12 COG0534 NorM Na+-driven multid 99.9 2.5E-23 5.3E-28 191.6 27.4 212 32-245 232-445 (455)
13 PRK09575 vmrA multidrug efflux 99.9 7.4E-23 1.6E-27 189.3 27.7 207 34-243 227-436 (453)
14 TIGR01695 mviN integral membra 99.9 3.7E-21 8E-26 180.7 30.2 232 36-276 218-454 (502)
15 TIGR01695 mviN integral membra 99.9 1.4E-20 3E-25 176.8 34.1 271 43-321 2-282 (502)
16 PRK15099 O-antigen translocase 99.9 1.2E-20 2.5E-25 173.1 30.1 269 43-322 3-276 (416)
17 TIGR02900 spore_V_B stage V sp 99.9 3.9E-20 8.4E-25 173.2 30.7 244 44-291 2-255 (488)
18 PRK10367 DNA-damage-inducible 99.9 3.5E-19 7.7E-24 163.9 28.2 200 37-243 228-431 (441)
19 PF03023 MVIN: MviN-like prote 99.9 2.1E-18 4.6E-23 159.0 31.8 207 35-243 192-403 (451)
20 TIGR02900 spore_V_B stage V sp 99.8 1.6E-18 3.5E-23 162.3 25.6 205 34-243 218-434 (488)
21 COG0728 MviN Uncharacterized m 99.8 6.9E-17 1.5E-21 147.6 35.0 208 34-243 225-437 (518)
22 PF01554 MatE: MatE; InterPro 99.8 2.7E-20 5.8E-25 148.3 5.7 160 49-209 1-162 (162)
23 PRK15099 O-antigen translocase 99.8 6.2E-17 1.3E-21 148.5 26.9 203 34-243 208-412 (416)
24 PRK10459 colanic acid exporter 99.8 2E-16 4.3E-21 148.3 28.6 202 36-243 202-405 (492)
25 PF03023 MVIN: MviN-like prote 99.7 1.6E-14 3.5E-19 133.3 32.0 243 71-320 5-256 (451)
26 COG2244 RfbX Membrane protein 99.7 5.5E-15 1.2E-19 138.2 27.1 187 36-228 208-396 (480)
27 PF01943 Polysacc_synt: Polysa 99.7 1.7E-12 3.6E-17 111.9 32.4 261 44-320 2-263 (273)
28 COG0728 MviN Uncharacterized m 99.6 2.7E-12 5.8E-17 117.7 33.5 276 40-320 6-290 (518)
29 PRK10459 colanic acid exporter 99.6 6.6E-12 1.4E-16 117.8 29.1 251 41-312 5-257 (492)
30 TIGR00797 matE putative efflux 99.5 7.8E-13 1.7E-17 118.1 17.4 133 33-166 208-341 (342)
31 PF13440 Polysacc_synt_3: Poly 99.5 8.7E-10 1.9E-14 93.9 32.0 237 60-320 3-242 (251)
32 COG2244 RfbX Membrane protein 99.4 2.7E-10 5.8E-15 106.7 25.0 267 39-321 4-272 (480)
33 KOG1347 Uncharacterized membra 99.3 2E-11 4.3E-16 112.5 9.4 204 37-241 243-450 (473)
34 PF14667 Polysacc_synt_C: Poly 98.9 2.3E-07 4.9E-12 72.2 17.8 79 163-243 2-80 (146)
35 PF04506 Rft-1: Rft protein; 98.9 5.2E-07 1.1E-11 84.7 21.6 203 40-243 252-470 (549)
36 PF07260 ANKH: Progressive ank 98.9 1.3E-05 2.8E-10 68.3 27.3 250 37-294 7-269 (345)
37 KOG2864 Nuclear division RFT1 98.5 2.1E-05 4.5E-10 70.1 17.6 200 42-243 240-449 (530)
38 PF01943 Polysacc_synt: Polysa 97.8 0.0002 4.3E-09 61.4 10.5 74 34-108 198-272 (273)
39 PF13440 Polysacc_synt_3: Poly 97.1 0.0061 1.3E-07 51.5 10.1 67 42-108 184-251 (251)
40 COG4267 Predicted membrane pro 95.2 2.1 4.6E-05 38.1 23.3 140 89-243 72-211 (467)
41 PF04506 Rft-1: Rft protein; 94.3 5.2 0.00011 38.2 18.9 266 45-311 5-304 (549)
42 KOG2864 Nuclear division RFT1 78.3 58 0.0013 30.3 21.9 187 40-233 7-198 (530)
43 COG4267 Predicted membrane pro 72.1 77 0.0017 28.7 13.8 93 116-212 321-414 (467)
44 PF05975 EcsB: Bacterial ABC t 63.6 1.2E+02 0.0026 27.7 16.8 40 113-152 89-130 (386)
45 PF04505 Dispanin: Interferon- 62.8 47 0.001 22.7 6.3 38 97-134 36-73 (82)
46 PF07260 ANKH: Progressive ank 58.1 45 0.00097 29.4 6.7 49 37-85 231-285 (345)
47 PF02487 CLN3: CLN3 protein; 50.1 62 0.0013 29.7 6.7 27 34-60 236-262 (402)
48 KOG3097 Predicted membrane pro 48.2 1.3E+02 0.0027 27.1 7.9 68 21-88 9-76 (390)
49 PF05313 Pox_P21: Poxvirus P21 46.2 1.5E+02 0.0033 23.6 7.8 27 217-243 135-161 (189)
50 KOG2234 Predicted UDP-galactos 39.2 2.1E+02 0.0045 25.6 8.0 22 252-273 81-102 (345)
51 PRK03612 spermidine synthase; 37.6 3.7E+02 0.0081 25.7 22.2 46 190-237 149-194 (521)
52 PF14184 YrvL: Regulatory prot 28.1 2.7E+02 0.0058 21.1 13.2 101 126-228 9-110 (132)
53 PF01554 MatE: MatE; InterPro 27.5 1.3E+02 0.0027 22.9 4.6 27 269-295 1-27 (162)
54 PRK00523 hypothetical protein; 26.8 76 0.0016 21.1 2.5 23 220-242 5-27 (72)
55 PF01102 Glycophorin_A: Glycop 22.8 1.1E+02 0.0025 22.7 3.2 11 219-229 67-77 (122)
56 TIGR00893 2A0114 d-galactonate 22.8 5.1E+02 0.011 22.5 19.7 9 103-111 272-280 (399)
57 COG4794 EscS Type III secretor 22.5 2.7E+02 0.006 19.3 8.2 38 113-150 2-39 (89)
58 TIGR00383 corA magnesium Mg(2+ 20.9 4.8E+02 0.01 22.8 7.5 13 231-243 303-315 (318)
59 COG4536 CorB Putative Mg2+ and 20.3 6.7E+02 0.015 22.9 8.9 29 204-234 75-103 (423)
60 PRK11085 magnesium/nickel/coba 20.1 5.1E+02 0.011 23.0 7.2 28 187-214 251-278 (316)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=3e-40 Score=303.51 Aligned_cols=285 Identities=21% Similarity=0.267 Sum_probs=265.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchh
Q 020680 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (323)
Q Consensus 36 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~ 115 (323)
.+++.|+++++++|++++++.+.+++.+|+.++||++++++|+.++++++..+ .+.+..+++.+..+++||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 57789999999999999999999999999999999999999999999999886 57899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHH
Q 020680 116 MLGVYMQRSWIVLFVCCVL-LLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (323)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 194 (323)
++++..++++.++++++++ ..+.+++.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999955 677888999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cc-cCcchhHHHHHHHHHHHHHHHHHHHHhccc--cccccCCcHHHHhcHHHHHHHHHHH
Q 020680 195 VSLVALLVHIFVSWLFVNR-MQ-LGVIGTAATLNFSWWILVFGLFGYVSCGGC--PLTWTGFTLEAFSGLWQFVKLSAAS 270 (323)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~-~~-~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~p~ 270 (323)
.+++++++|+++||+|+++ ++ +|+.|+++||++++++.+++..++++++++ .....+..+.+++.+|+++++|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999888753 3333334456678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 020680 271 GVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG 323 (323)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~s 323 (323)
++++..+...+.+.+.+++++|++ ++|||++..++.++.++++.|+++|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~ 301 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVT 301 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999964 678999999999999999999999864
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3.7e-37 Score=282.80 Aligned_cols=283 Identities=16% Similarity=0.142 Sum_probs=252.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchh
Q 020680 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (323)
Q Consensus 37 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~ 115 (323)
+++.|+++++++|.+++++++.+++.+|+.++|++ |++++|+.+++.++.+. .+.+..+++.+..+++||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 46688999999999999999999999999999997 67799999999999886 47888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHH
Q 020680 116 MLGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (323)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 194 (323)
++++..++++.++++++++. .+...+.++++.+++.|+|+.+.+.+|+++..++.|+..+..++.+++|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999998765 45556888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc-ccc-ccccCCcHHH-HhcHHHHHHHHHHHH
Q 020680 195 VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG-GCP-LTWTGFTLEA-FSGLWQFVKLSAASG 271 (323)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~-~~~~~~~l~~~~p~~ 271 (323)
.++++.++|+++++++++..++|+.|+++||.+++++..++..+++.++ +.+ .+.+.+ +.+ ++.+|+++++|.|.+
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEML-KTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHh-hhhhHHHHHHHHHhCchHH
Confidence 9999999999999999998889999999999999999988877777654 211 111111 112 246899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 020680 272 VMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG 323 (323)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~s 323 (323)
++...+...+.+.+.+++++|+. ++|||++..++.++.++++.|+++|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~~--alAa~~I~~~i~~~~~~~~~gl~~a~~ 292 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGSD--IIAVNAVLMTLLTFTAYALDGFAYAVE 292 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999964 778999999999999999999999863
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=6.9e-37 Score=283.25 Aligned_cols=286 Identities=17% Similarity=0.183 Sum_probs=256.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCch
Q 020680 35 TIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (323)
Q Consensus 35 ~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~ 114 (323)
+++++.|++++.++|.+++++.+.+.+.+|+.+++++|++++++++++.++.++ ...+..|++.+..++++|++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 457789999999999999999999999999999999999999999999999886 4678899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHH
Q 020680 115 YMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (323)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 194 (323)
|++++..++++.++++++++..++.++.++++.+++.|+|+.+.+.+|+++..++.|+..+....++++|+.||++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999877655556779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc----ccCcchhHHHHHHHHHHHHHHHHHHHHhcc-c-cccc-cCCcHHHHhcHHHHHHHH
Q 020680 195 VSLVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCGG-C-PLTW-TGFTLEAFSGLWQFVKLS 267 (323)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~~----~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~l~~~ 267 (323)
.++++.++|+++||+|+++. ++|+.|+++|+.+++....+...+++++++ . +.++ ++..+.+++.+|++++++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg 242 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG 242 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence 99999999999999999863 589999999999999888877766666542 2 1221 122234567799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 020680 268 AASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG 323 (323)
Q Consensus 268 ~p~~~~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~s 323 (323)
+|.++++..+...+.+.+.+++++|+. ++|++++..++..+.++++.|+++|++
T Consensus 243 ~P~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i~~~i~~l~~~~~~gi~~a~~ 296 (464)
T PRK00187 243 LPIGGTYAVEVGLFTFAALCMGALGST--QLAAHQIALQIVSVAFMVPVGLSYAVT 296 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999964 677999999999999999999998753
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=3.8e-36 Score=278.64 Aligned_cols=287 Identities=13% Similarity=0.151 Sum_probs=253.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCc
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~ 113 (323)
...-+.+|+++++++|.++++++..+.+.+|+.+++++|++++|+++++.++..+ .+.+..|++.+.+++++|++|++|
T Consensus 22 ~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~ 100 (478)
T PRK10189 22 SYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRD 100 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3334568999999999999999999999999999999999999999999999876 578999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchh
Q 020680 114 YYMLGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLG--QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNM 190 (323)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 190 (323)
+|++++..++++.++++++++. .+.+++.++++.++. .|+|+.+.+.+|+++..++.|+..+..+..+++|+.||++
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~ 180 (478)
T PRK10189 101 RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTK 180 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 9999999999999999998765 556668899999984 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----ccCcchhHHHHHHHHHHHHHHHHHHHHhc-cc--cccccC-CcHHHHhcHHH
Q 020680 191 VIAWVSLVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCG-GC--PLTWTG-FTLEAFSGLWQ 262 (323)
Q Consensus 191 ~~~~~~~~~~~~~i~l~~~li~~~----~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~-~~--~~~~~~-~~~~~~~~~~~ 262 (323)
.+++.++++.++|+++++++++.. ++|+.|+|+|+.+++++..++..+++.++ +. +.++++ +++.+++.+|+
T Consensus 181 ~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (478)
T PRK10189 181 IPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWE 260 (478)
T ss_pred HhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHH
Confidence 999999999999999999999863 78999999999999999888776666543 21 212222 11235678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 020680 263 FVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG 323 (323)
Q Consensus 263 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~s 323 (323)
++++|+|.+++.......+.+.+.+++++|+. ++|||+++.++.++.++++.|+++|++
T Consensus 261 il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~--~~Aa~~I~~~i~~~~~~~~~gi~~A~~ 319 (478)
T PRK10189 261 VMGIGIPASIESVLFNGGKLLTQMFVAGMGTS--VIAGNFIAFSIAALINLPGNALGSAST 319 (478)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988889999999964 778999999999999999999998863
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=7.4e-35 Score=269.21 Aligned_cols=286 Identities=17% Similarity=0.171 Sum_probs=256.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCch
Q 020680 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (323)
Q Consensus 36 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~ 114 (323)
+++..|++++.++|.+++++.+.+++.+|+.++++ .|++++++++.+.++.++ ...+..+++.+..++++|++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCH
Confidence 34578999999999999999999999999999999 599999999999999886 4678889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHH
Q 020680 115 YMLGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (323)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 193 (323)
|++++.+++++.++++++++. .+.+.+.++++.+++.|+++.+.+.+|+++..++.++..+.....+++|+.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 999999999999999999765 5666689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhcccccccc-CCcHHHHhcHHHHHHHHHHHHH
Q 020680 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWT-GFTLEAFSGLWQFVKLSAASGV 272 (323)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~p~~~ 272 (323)
+.++.+.++|+++++++++.+++|+.|+++|+.+++++..++..+++++++.+.+++ +..+.+++.+|+++++|.|.++
T Consensus 166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHH
Confidence 999999999999999999988899999999999999999988777776553332222 1223456778999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 020680 273 MLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG 323 (323)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~s 323 (323)
+...+...+.+.+.+++++|+. .++|++++..++..+.+++..|++++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~-~~lAa~~i~~~i~~~~~~~~~gi~~a~~ 295 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGSA-LTVGAYAIVGYLMVLYYLVAEGIAEGMQ 295 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999963 3678999999999999999999998863
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=9.9e-34 Score=262.46 Aligned_cols=287 Identities=18% Similarity=0.307 Sum_probs=254.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCC
Q 020680 33 TRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAK 112 (323)
Q Consensus 33 ~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~ 112 (323)
.++.++.+|+++++++|.+++++...+.+.+|+.+++++|++++++++++.++... ...+..|++.+..|.++|++|++
T Consensus 4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 35667889999999999999999999999999999999999999999999998765 46788899999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhH
Q 020680 113 RYYMLGVYMQRSWIVLFVCCVLLL-PLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMV 191 (323)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 191 (323)
|+|++++..++++.+++++++++. +.+.+.++++.+++.|+++.+.+..|+++..++.++..+..++++++|+.||++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 999999999999999999997754 5555788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----cccCcchhHHHHHHHHHHHHHHHHHHHHhccc-c--ccccCCcHHHHhcHHHHH
Q 020680 192 IAWVSLVALLVHIFVSWLFVNR----MQLGVIGTAATLNFSWWILVFGLFGYVSCGGC-P--LTWTGFTLEAFSGLWQFV 264 (323)
Q Consensus 192 ~~~~~~~~~~~~i~l~~~li~~----~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l 264 (323)
+++.++++.++|+++++++++. .++|+.|+++++.+++++..++..+++++++. + +.++++.+.+++.+|+++
T Consensus 163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il 242 (456)
T PRK01766 163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLL 242 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHH
Confidence 9999999999999999999864 25899999999999999999988877765522 1 112222234557799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 020680 265 KLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGT 322 (323)
Q Consensus 265 ~~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~ 322 (323)
++++|.+++...+...+.+.+.+++++|+. ++|++++..++.++.++++.|++.|+
T Consensus 243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gl~~a~ 298 (456)
T PRK01766 243 KLGLPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALNFSSLLFMLPLSLAMAL 298 (456)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999964 57799999999999999999998875
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.97 E-value=8.6e-29 Score=221.16 Aligned_cols=271 Identities=26% Similarity=0.461 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchhhHHHHHHHHHHHH
Q 020680 49 PAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVL 128 (323)
Q Consensus 49 p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 128 (323)
|.++++++..+...+|+.+++++|++++++++.+.++.+. ...+..+++++..|.++++.|++|+|+.++..+....+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999998775 567889999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 020680 129 FVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVS 207 (323)
Q Consensus 129 ~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~l~ 207 (323)
.+++++. .+.+.+.+++..+++.|++..+.+..++++++++.++.++..+..+++|+.||++.+++.++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999775 556668899998888788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcc-cCcchhHHHHHHHHHHHHHHHHHHHHhc-cccccccCCcHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020680 208 WLFVN-RMQ-LGVIGTAATLNFSWWILVFGLFGYVSCG-GCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRIL 284 (323)
Q Consensus 208 ~~li~-~~~-~Gi~G~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 284 (323)
+++++ .++ +|+.|+++++.+++++..++..++.+++ +.+.+|++..+.+++.+|++++++.|..+..+..++.+.+.
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99988 666 7899999999999999988887777653 33333323334455789999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 020680 285 ISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGT 322 (323)
Q Consensus 285 ~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~ 322 (323)
+.+++.+|.+ ++++|+++.++.++..+++.+++++.
T Consensus 240 ~~i~~~~g~~--~v~~~~~a~~~~~~~~~~~~~~~~a~ 275 (342)
T TIGR00797 240 ALLVARLGSI--ALAAHQIALNVESLLFMPAFGFGIAV 275 (342)
T ss_pred HHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999854 67799999999999999999988764
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.97 E-value=1.6e-27 Score=217.94 Aligned_cols=290 Identities=43% Similarity=0.726 Sum_probs=273.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCC
Q 020680 33 TRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAK 112 (323)
Q Consensus 33 ~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~ 112 (323)
++...++.|++++++.|.++..+.+.....+++.++||+|+.++++.+++....+...+.+..|+..+..++++|++|++
T Consensus 20 ~~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~ 99 (473)
T KOG1347|consen 20 FSQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAK 99 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccc
Confidence 34447899999999999999999999999999999999999999999999999998788999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHH
Q 020680 113 RYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (323)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 192 (323)
+++....+.+++.......+++....+.+.++++..+++|+++...+..|.++..+..+..........++|++++..+.
T Consensus 100 ~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~ 179 (473)
T KOG1347|consen 100 KFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPL 179 (473)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhcHHHHHHHHHHHHH
Q 020680 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGV 272 (323)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 272 (323)
.+......++|++++|++++..++|..|++++..+++++.......|.........|..+..+ ++.++++++.++|.++
T Consensus 180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~ 258 (473)
T KOG1347|consen 180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAV 258 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchh
Confidence 999999999999999999999999999999999999999999888887766555666666666 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 020680 273 MLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG 323 (323)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~s 323 (323)
+..+|++.+++...+.+.+++...++++.+|+.++....++.+.|++.|+|
T Consensus 259 miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~s 309 (473)
T KOG1347|consen 259 MICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVS 309 (473)
T ss_pred eeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999999878899999999999999999999998864
No 9
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.94 E-value=1.8e-24 Score=200.56 Aligned_cols=208 Identities=17% Similarity=0.158 Sum_probs=190.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCc
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~ 113 (323)
+.+++.+|++++.++|..++++.+.....+|+.+++++|++++++++++.++..+ .+.+..|++.+.+++++|++|+||
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4567789999999999999999999999999999999999999999999999886 678999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCC--CH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Q 020680 114 YYMLGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLGQ--PD---DVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQL 187 (323)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g 187 (323)
+|++++..+.++.++.+.+++. .+.+.+.+++..++.. ++ |+.+.+..|+++.+++.++..++.++.+.+||.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 9999999999999999999664 5666799999999853 43 6888899999999999999999999999999999
Q ss_pred chhHHHHHHHHHH-HHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHh
Q 020680 188 KNMVIAWVSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (323)
Q Consensus 188 ~~~~~~~~~~~~~-~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~ 242 (323)
|++.+++.++++. +++++++|++.+.+++|+.|+|+++.+++++..++....+++
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 999999999998888999999999999999988766655543
No 10
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.93 E-value=1.6e-23 Score=194.34 Aligned_cols=209 Identities=21% Similarity=0.198 Sum_probs=193.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCc
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~ 113 (323)
+++++.+|++++.++|..++++.+.+...+++.+++++|++++++++++.++.++ .+.+..|++.+.++.++|++|+||
T Consensus 232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gl~~a~~~~v~~~~Ga~~ 310 (456)
T PRK01766 232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSL-LFMLPLSLAMALTIRVGFELGAGR 310 (456)
T ss_pred CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567789999999999999999999999999999999999999999999999887 478899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHH
Q 020680 114 YYMLGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (323)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 192 (323)
++++++..+.++.++..++++. .+++.+.+++..+++.|+++.+.+..|+++..+..++.+++.+..+++||.||++.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 390 (456)
T PRK01766 311 TLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVI 390 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHH
Confidence 9999999999999999999764 566669999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 193 AWVSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 193 ~~~~~~~~-~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
++.++++. ++++++.+++.+..++|+.|+|+++.+++++..++..+++++.
T Consensus 391 ~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 391 FFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 7899999999887789999999999999999998777666554
No 11
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.93 E-value=4.2e-23 Score=191.62 Aligned_cols=213 Identities=14% Similarity=0.099 Sum_probs=194.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCc
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~ 113 (323)
+.+++.+|++++.+.|..++.....+...+.+.+++++|++++|+++++.++.++ .+.+..|++.+.++++++++|++|
T Consensus 252 ~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~-~~~~~~gi~~A~~~lvg~~~Ga~~ 330 (478)
T PRK10189 252 PLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAAL-INLPGNALGSASTIITGTRLGKGQ 330 (478)
T ss_pred cCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3467889999999999999999999999999999999999999999999999886 578899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHH
Q 020680 114 YYMLGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (323)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 192 (323)
.|++++..+.+..++.+.++.. .+.+.+.+++..+|.+|+|+.+.+..++++.++..++.+.+.+..+.+||.||++.+
T Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~ 410 (478)
T PRK10189 331 IAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYA 410 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHH
Confidence 9999999999999999998664 566669999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhccccc
Q 020680 193 AWVSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPL 247 (323)
Q Consensus 193 ~~~~~~~~-~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~ 247 (323)
++.++.+. ++.+++.+++.+..++|+.|+|++..+++.+..++..+.+++.++++
T Consensus 411 ~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 411 MWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 99999988 78899999988777899999999999999999888777766554433
No 12
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.93 E-value=2.5e-23 Score=191.63 Aligned_cols=212 Identities=21% Similarity=0.227 Sum_probs=198.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCC
Q 020680 32 LTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGA 111 (323)
Q Consensus 32 ~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~ 111 (323)
..+++++..|++++.++|..++++.......+.+.+++++|++.+|+++++.++.++ .+.+..|++.+.++++++++|+
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASF-IFMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC
Confidence 447778999999999999999999999999999999999999999999999999987 5889999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchh
Q 020680 112 KRYYMLGVYMQRSWIVLFVCCVL-LLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNM 190 (323)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 190 (323)
||+|++++..+.+..++..+++. ..+++.+.+++..+|.+|+|+.+.+..++++..+..++.+.+.+..+++||.||++
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999999999999999999966 46677799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhccc
Q 020680 191 VIAWVSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGC 245 (323)
Q Consensus 191 ~~~~~~~~~~-~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~ 245 (323)
.+++.++++. ++.+++.|++.+.. +|..|.|++..+++.+..++..++++++++
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~ 445 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRW 445 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999988 77899999888776 999999999999999999988888877633
No 13
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=7.4e-23 Score=189.35 Aligned_cols=207 Identities=15% Similarity=0.192 Sum_probs=189.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCC
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGD-IELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAK 112 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~-~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~ 112 (323)
+.+++..|++++.+.|..+++....+...+.+.+++++|+ +++|+++++.++.++ .+.+..|++.+.+++++|++|+|
T Consensus 227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga~ 305 (453)
T PRK09575 227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGAR 305 (453)
T ss_pred CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCC
Confidence 4567889999999999999999999999999999999986 589999999999886 57899999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchh
Q 020680 113 RYYMLGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLGQ-PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNM 190 (323)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 190 (323)
|+|++++..+.++.+++..+++. .+.+.+.+++..+++. |+|+.+.+..|+++..++.++.+++.+..+++||.||++
T Consensus 306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 385 (453)
T PRK09575 306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG 385 (453)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999775 5566699999999985 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 191 VIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 191 ~~~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
.+++.+....++++++.+++... +|+.|+|+++.+++++..++..++++++
T Consensus 386 ~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 386 KALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888899999888765 8999999999999999888777766654
No 14
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.90 E-value=3.7e-21 Score=180.69 Aligned_cols=232 Identities=15% Similarity=0.102 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchh
Q 020680 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (323)
Q Consensus 36 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~ 115 (323)
+++..|++++.+.|..++++...+...+|+.+.+.+|++++++|+.+.++.++....+..+++.+..|.+++++|++|+|
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 45678999999999999999999999999988666999999999999999886444467899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchh
Q 020680 116 MLGVYMQRSWIVLFVCCVLLL-PLYLFASPVLKLLGQ----PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNM 190 (323)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 190 (323)
+.++.++++..+...++++.. .++.+++++..++.+ |+|..+.+..++++++++.++..++.+..+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 999999999999999998864 556689999988765 556778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhcHHHHHHHHHHH
Q 020680 191 VIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAAS 270 (323)
Q Consensus 191 ~~~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 270 (323)
.+++.+....++|++++++++.. +|..|+|+|+.+++.+..++..++++|+..... ..+..+.+.|...+.
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~as 448 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKGIL-------PFGVLKVLAKLVIAS 448 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-------chHHHHHHHHHHHHH
Confidence 99999999999999999999877 899999999999999998888777766521111 113345556655555
Q ss_pred HHHHHH
Q 020680 271 GVMLCL 276 (323)
Q Consensus 271 ~~~~~~ 276 (323)
.++...
T Consensus 449 ~~m~~~ 454 (502)
T TIGR01695 449 AIIGGV 454 (502)
T ss_pred HHHHHH
Confidence 554443
No 15
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.90 E-value=1.4e-20 Score=176.77 Aligned_cols=271 Identities=15% Similarity=0.075 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhHhCCCchhhHHH
Q 020680 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIEL-AAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYMLGV 119 (323)
Q Consensus 43 il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-a~~~~~~~~~~~~~~~~~-~~l~~~~~~~~s~~~g~~~~~~~~~ 119 (323)
++|.+.-..++++++.+++++|..++++ +|++++ ++++.+.++.+.+..... .|++.+..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688888999999999999999999999 999999 899999999875433333 467888777776654332 57777
Q ss_pred HHHHHHHHHHHHH-HH-HHHHHHhhHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 020680 120 YMQRSWIVLFVCC-VL-LLPLYLFASPVLKLL--GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (323)
Q Consensus 120 ~~~~~~~~~~~~~-~~-~~~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 195 (323)
.+..+.....+++ +. ..+.+++++++..++ +.+++..+.+..|++++.++.++..+..+.++++|+.||.+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 7777666666554 33 345566788888877 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCcchhH--HHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhcHHHHHHHHHHHHHH
Q 020680 196 SLVALLVHIFVSWLFVNRMQLGVIGTA--ATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (323)
Q Consensus 196 ~~~~~~~~i~l~~~li~~~~~Gi~G~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 273 (323)
+++..+++++..+++.. ++|..|++ +++++++.+..++.+++++|++.+ ++...+.+++.+|++++.+.|..+.
T Consensus 160 ~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFDW--NYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFL--LKPRFNFRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--ccCcCCCCChhHHHHHHHHHHHHHH
Confidence 99998887775444443 58999998 999999999888877766654322 1111122346789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-HHhhhhhc
Q 020680 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMM-IPLAFFAG 321 (323)
Q Consensus 274 ~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~-~~~~~~~a 321 (323)
....+....++..+.+.+|.+ ++++|+.+.++.++... +..+++++
T Consensus 236 ~~~~~~~~~id~~~~~~~~~~--~v~~~~~a~~l~~~~~~~~~~~i~~~ 282 (502)
T TIGR01695 236 SSASQITLLINTALASFLEIG--SVSALYYANRIYQLPLGIFGISLSTV 282 (502)
T ss_pred HHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888854 56799999999887664 45566543
No 16
>PRK15099 O-antigen translocase; Provisional
Probab=99.90 E-value=1.2e-20 Score=173.10 Aligned_cols=269 Identities=13% Similarity=0.018 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchhhHHHHH
Q 020680 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (323)
Q Consensus 43 il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~ 121 (323)
++|.+.....+.+...+.+++-..++.+ +|++++|.++....+...+......|++.+....++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5677788888999999999999999999 99999999999998887655444777778878888887 68888999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 020680 122 QRSWIVLFVCCVL-LLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVAL 200 (323)
Q Consensus 122 ~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~ 200 (323)
+.++.+.++.++. ..+++.+.+++...+..+++. . .++.+..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY-Q---GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998866 456667888998877766652 2 3466666666677788899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhccccccccC-CcHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 020680 201 LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTG-FTLEAFSGLWQFVKLSAASGVMLCLENW 279 (323)
Q Consensus 201 ~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 279 (323)
++|+.+ +++.+. ..|+.|+++|+++++.+..+...+++++++. .+.++ ..+.+++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGT-IPLSYLKPSWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccc-eehHhhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444443 1499999999999999988777766665422 11111 1123456789999999999999999999
Q ss_pred HHHHHHHHHh-cCCchhHHHHHHHHHHHHHH-HHHHHHhhhhhcc
Q 020680 280 YYRILISMTG-NLQNAEIAVDALSICMTING-WEMMIPLAFFAGT 322 (323)
Q Consensus 280 ~~~~~~~~~~-~lg~~~~~~aa~~i~~~~~~-~~~~~~~~~~~a~ 322 (323)
.....+.+++ .+|++ +++.|+++.++.+ +..+++.+++++.
T Consensus 234 ~~~~~~~~l~~~~g~~--~vg~y~~a~~i~~~~~~~~~~~~~~a~ 276 (416)
T PRK15099 234 AYVMMRNLLAAHYSWD--EVGIWQGVSSISDAYLQFITASFSVYL 276 (416)
T ss_pred HHHHHHHHHHhcCCHH--HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 88853 7889999999977 4578888888763
No 17
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.89 E-value=3.9e-20 Score=173.19 Aligned_cols=244 Identities=12% Similarity=0.116 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchhhHHHHHH
Q 020680 44 WYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQ 122 (323)
Q Consensus 44 l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~ 122 (323)
.|.+.|.+++++...+.+.+|+.+++| +|++++|+++.+.++.+++......|++.+..+.++|+.|++|+|+.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999988864433456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 020680 123 RSWIVLFVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALL 201 (323)
Q Consensus 123 ~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~ 201 (323)
.++.+.++.+++. .+.+.+.+++...+.++++. ..++++..+..++..+..+..+.+|+.+|.+..+..+++..+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999998765 45555777777766666543 246788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----cccCcchhHHHHHHHHHHHHHHHHHHHHhccc-c--ccccCCcHHHHhcHHHHHHHHHHHHHH
Q 020680 202 VHIFVSWLFVNR-----MQLGVIGTAATLNFSWWILVFGLFGYVSCGGC-P--LTWTGFTLEAFSGLWQFVKLSAASGVM 273 (323)
Q Consensus 202 ~~i~l~~~li~~-----~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~p~~~~ 273 (323)
++++++..++.. .++|+.|+++++.+++.+..+...+++++++. + ..+.+..+.+++.+|++++.+.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776666542 24678888999999999988877666554422 1 112222234457899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 020680 274 LCLENWYYRILISMTGNL 291 (323)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l 291 (323)
++.......+++.++++.
T Consensus 238 ~~~~~~~~~~d~~ii~~~ 255 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQR 255 (488)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998888777654
No 18
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.86 E-value=3.5e-19 Score=163.90 Aligned_cols=200 Identities=17% Similarity=0.117 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchhh
Q 020680 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (323)
Q Consensus 37 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~ 116 (323)
++..|++++.+.|..+++........+-+.+++++|++++|+++++.++.++ .+.+..|++.+.+++++|++|+||+|+
T Consensus 228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~-~~~~~~gl~~a~~~lvg~~~Ga~~~~~ 306 (441)
T PRK10367 228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTF-TAYALDGFAYAVEAHSGQAYGARDGSQ 306 (441)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHcCCCHHH
Confidence 3478999999999999999999999999999999999999999999999886 578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC---chhHH
Q 020680 117 LGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQL---KNMVI 192 (323)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g---~~~~~ 192 (323)
+++..+.+..++.+.+... .+.+.+.+++..+|.+|+|+.+.+..++++..+..+......+..++++|.+ |++.+
T Consensus 307 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~ 386 (441)
T PRK10367 307 LLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9999999999999999665 5566689999999999999999999999998876443334444444455555 59999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
++.+.++..+ .++... ++|+.|.|++..+++.+..++..++++++
T Consensus 387 ~~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 387 MAVAAAGFAL----TLLTLP--WLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHHH----HHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887542 112222 37999999999999999999887776655
No 19
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.86 E-value=2.1e-18 Score=158.99 Aligned_cols=207 Identities=15% Similarity=0.126 Sum_probs=190.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCch
Q 020680 35 TIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (323)
Q Consensus 35 ~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~ 114 (323)
...+..|++++...|..++....++...+|+.+.+.+++.++++++.++++.++....+..+++++..|..++...+||.
T Consensus 192 ~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~ 271 (451)
T PF03023_consen 192 WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW 271 (451)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34566899999999999999999999999999999999999999999999999876677889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCch
Q 020680 115 YMLGVYMQRSWIVLFVCCVLLL-PLYLFASPVLKLLG----QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKN 189 (323)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 189 (323)
++.++..++++...+.+.+|.. .++.+++++..++. -+.|..+....++++++++.++.+++.++...+.+.||+
T Consensus 272 ~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~ 351 (451)
T PF03023_consen 272 EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDT 351 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCc
Confidence 9999999999999999999974 56669999998764 356667788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 190 MVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 190 ~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
|.+++.++++.++|+++++++... +|..|.++|+.++.++..++..++++|+
T Consensus 352 ~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 352 KTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888 9999999999999999999888888776
No 20
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.84 E-value=1.6e-18 Score=162.27 Aligned_cols=205 Identities=15% Similarity=0.119 Sum_probs=172.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCh------HHHHHH----HHHHHHHHHHHHHHHHHHHHhHH
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGD------IELAAI----SIANNVIVGFDFGLLLGMASALE 102 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~------~~~a~~----~~~~~~~~~~~~~~~~~l~~~~~ 102 (323)
+.+++.+|++++.+.|..++++...+.+.+|+.++++ +++ ++.+.+ +.+.++..+. ..+..+++.+..
T Consensus 218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~ 296 (488)
T TIGR02900 218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALV 296 (488)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHH
Confidence 4456789999999999999999999999999999987 432 122222 3445555553 466789999999
Q ss_pred HHHHhHhCCCchhhHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020680 103 TLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLL-PLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQR 181 (323)
Q Consensus 103 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 181 (323)
|.++++.|++|+|+.++..+++..+...++++.. .+..++++++.++..+++ +..++++++++.++..++.+..+
T Consensus 297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998754 455688889888765443 56789999999999999999999
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 182 FLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 182 ~l~a~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
.+++.||+|.+++.++++.++|++++++++....+|+.|+|+++.+++++..++..++.+|.
T Consensus 373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998733348999999999999999988888777654
No 21
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.83 E-value=6.9e-17 Score=147.58 Aligned_cols=208 Identities=14% Similarity=0.119 Sum_probs=189.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCc
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~ 113 (323)
..+.+..|++.+...|..++...+++...+|+.+.+.+.+.+.+.++.+.++.++..-.+..++++...|..||+..++|
T Consensus 225 ~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~ 304 (518)
T COG0728 225 GFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD 304 (518)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 34447899999999999999999999999999999999999999999999999987668899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCc
Q 020680 114 YYMLGVYMQRSWIVLFVCCVLLL-PLYLFASPVLKLLG----QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLK 188 (323)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~ 188 (323)
.++.++..+.++.++.++++|.. .+..+++|+...+. -+++....+.+.+..+.++.++..+..++...+.+.+|
T Consensus 305 ~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d 384 (518)
T COG0728 305 WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARED 384 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999975 55569999998763 24555566888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 189 NMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 189 ~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
+|.|+++++++.++|+.+++.+... +|..|.++++.++.+++..+.++.++|+
T Consensus 385 ~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 385 TKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888777 8899999999999999998888777776
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.81 E-value=2.7e-20 Score=148.28 Aligned_cols=160 Identities=27% Similarity=0.404 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchhhHHHHHHHHHHHH
Q 020680 49 PAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVL 128 (323)
Q Consensus 49 p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 128 (323)
|..++++++.+...+|+.+++++|++++++++++..+.++ ...+..|++.+..+.++|++|++|+|++++..++++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999987 568999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHH
Q 020680 129 FVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVAL-LVHIFV 206 (323)
Q Consensus 129 ~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~l 206 (323)
.+++++. .+.+.+.+++..+++.|+|+.+.+.+|+++..++.++..+.....+++++.||++.+++.+++.. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999775 45567899999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHH
Q 020680 207 SWL 209 (323)
Q Consensus 207 ~~~ 209 (323)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 23
>PRK15099 O-antigen translocase; Provisional
Probab=99.80 E-value=6.2e-17 Score=148.49 Aligned_cols=203 Identities=6% Similarity=-0.048 Sum_probs=174.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCC
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAK 112 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~ 112 (323)
+.+++.+|++++++.|..++++...+....|+.++++ +|++++|.|+.+.++.+.+...+..+++++..|.++++ +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 4567889999999999999999999999999999985 99999999999999987545678899999999999995 5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhH
Q 020680 113 RYYMLGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMV 191 (323)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 191 (323)
|+|+.++..++.......++++. ...++++++++.++.+++ .+.+.+++++++++.++...+......+.+.++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999888888665 445579999999987765 333677899999998888887777777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 192 IAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 192 ~~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
.....+...++++++++++++. +|..|+++++.+++.+..++..+...++
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~~ 412 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLLY 412 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988889999999999988 8999999999999999988776555443
No 24
>PRK10459 colanic acid exporter; Provisional
Probab=99.79 E-value=2e-16 Score=148.33 Aligned_cols=202 Identities=13% Similarity=0.002 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCch
Q 020680 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (323)
Q Consensus 36 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~ 114 (323)
+++..|++++++.|...+++...+...+|+.++|+ +|++++|.|+.+.++.+.....+...++....|..++. ++|+
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 45678999999999999999999999999999999 89999999999999988654555666788889999886 6788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHH
Q 020680 115 YMLGVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (323)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 193 (323)
++.++.+++...+...+++|..+ +..++++++.++.+++ ...+...++++++...+..........+++.||+|..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 89999999999999999988654 5558899988776654 45578899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
+.+++..+++++..+.+... +|+.|+++++.+++.+......++..|+
T Consensus 358 ~~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777766 8999999999999999888777777554
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.74 E-value=1.6e-14 Score=133.30 Aligned_cols=243 Identities=17% Similarity=0.136 Sum_probs=196.8
Q ss_pred cChH-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhHhCCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHH
Q 020680 71 LGDI-ELAAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVL-LLPLYLFASPVLK 147 (323)
Q Consensus 71 lg~~-~~a~~~~~~~~~~~~~~~~~-~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 147 (323)
+|.. +..+|.++.++.+.+...+. .+++.+..|..++.. ++|+|+.++..+....+..+..+. ..+.+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6765 56799999999997644444 578999999999998 888999999999888888777755 4566778899998
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccC---cchhH
Q 020680 148 LL--GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLG---VIGTA 222 (323)
Q Consensus 148 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G---i~G~a 222 (323)
++ +.|++..+.+.+++++..+..++..+..++.+++|+++|...+....++.++..+...+++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 87 5578888999999999999999999999999999999999999999998887766654444444 67 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 020680 223 ATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALS 302 (323)
Q Consensus 223 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~ 302 (323)
++.+++.++..++...+.+|...+.+.+. ....+.+|++++...|..+.....+....+.+.+++.++++ ++++.+
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKF--DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHH
Confidence 99999999999888888777643322211 11224688999999999999999999999999999999977 466999
Q ss_pred HHHHHHHHHH-HHHhhhhh
Q 020680 303 ICMTINGWEM-MIPLAFFA 320 (323)
Q Consensus 303 i~~~~~~~~~-~~~~~~~~ 320 (323)
.+.++.++.. .+..++++
T Consensus 238 YA~~l~~lp~~i~~~~i~t 256 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSIST 256 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988766 44555554
No 26
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.72 E-value=5.5e-15 Score=138.16 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCch
Q 020680 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (323)
Q Consensus 36 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~ 114 (323)
.++.+|++++.+.|.....+...+.+.+|+.++++ +|++++|.|+.+.++... ...+..+++....|..++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 47899999999999999999999999999999999 899999999988888776 5678889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHH
Q 020680 115 YMLGVYMQRSWIVLFVCCVLLL-PLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (323)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 193 (323)
++.++..++...+...+++|.. ....++++++..+.+++.. .+...+++++++.++..+.......+++.|+++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 9999999999999999998865 5555888999877666532 277789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHH
Q 020680 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFS 228 (323)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~ 228 (323)
+.+.++.++|++++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999988 8999999999 44
No 27
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.66 E-value=1.7e-12 Score=111.90 Aligned_cols=261 Identities=15% Similarity=0.120 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchhhHHHHHH
Q 020680 44 WYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQ 122 (323)
Q Consensus 44 l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~ 122 (323)
+|.+......++...+.+++-..++.+ +|+++.|.++....+.+++......|++.+.....++...+ +++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 567778889999999999999999999 99999999999999988765555788888888877776332 344444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 020680 123 RSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLV 202 (323)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~ 202 (323)
.......+.++......... ..+..++. . ..+........++.........++++.++.+...+.++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333322222221 23333332 1 1122222222257788888999999999999999999999888
Q ss_pred HHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 020680 203 HIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYR 282 (323)
Q Consensus 203 ~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 282 (323)
..++...+... +.++.+..++..++.++..++..++.+|+.+ .++ ...+++..|++++.+.|..+..+.......
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-PRF---SFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776666654 2448899999999999888877777776531 111 122257899999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020680 283 ILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFA 320 (323)
Q Consensus 283 ~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~ 320 (323)
.+..+++.+.+.+ ++|.|+++.++......++.++.+
T Consensus 227 ~d~~ii~~~~g~~-~vg~Y~~a~~l~~~~~~~~~~~~~ 263 (273)
T PF01943_consen 227 IDRLIIGYFLGPE-AVGIYSVAYRLASAISFLLSSIST 263 (273)
T ss_pred hHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987744 678999999999999999888776
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.64 E-value=2.7e-12 Score=117.71 Aligned_cols=276 Identities=13% Similarity=0.073 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChH-HHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHhHhCCCchhh
Q 020680 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDI-ELAAISIANNVIVGFDFGL-LLGMASALETLCGQAFGAKRYYM 116 (323)
Q Consensus 40 ~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~-~~a~~~~~~~~~~~~~~~~-~~~l~~~~~~~~s~~~g~~~~~~ 116 (323)
..+++|.+.-.....+++.+.+++...+++. +|.. ...+++++.++.|.+--.+ -.+++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 3457777888888889999999999999988 8995 6789999999999654333 34578999999999988887788
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHc-CC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHH
Q 020680 117 LGVYMQRSWIVLFVCCVL-LLPLYLFASPVLKLL-GQ--PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (323)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 192 (323)
.++..+........+.+. ..+..++.+.+.... .. |++....+....+++.+..++..+.....+.+++.++...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 777777776555555544 455666777777444 33 23434468888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhcccccccc-CCcHHHHhcHHHHHHHHHHHH
Q 020680 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWT-GFTLEAFSGLWQFVKLSAASG 271 (323)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~p~~ 271 (323)
.+..+..++.-+...+.+.........+.++++.++-++..++.+..++|.....+.+ +++. +.+|++.+...|..
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~---~~lk~~~~~~~p~~ 242 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKD---PGLKRFLKLMLPAL 242 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCc---hhHHHHHHHHHHHH
Confidence 9999998877775555555442224678889999999999999999988874332222 1211 57899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHhhhhh
Q 020680 272 VMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEM-MIPLAFFA 320 (323)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~-~~~~~~~~ 320 (323)
+...+.++...+++.+++.+.++ +++.++.+.++.++.. ++.+++++
T Consensus 243 l~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~t 290 (518)
T COG0728 243 LGVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALST 290 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999876 4558888888887766 44555544
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=99.57 E-value=6.6e-12 Score=117.82 Aligned_cols=251 Identities=8% Similarity=0.013 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchhhHHH
Q 020680 41 KKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGV 119 (323)
Q Consensus 41 ~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~ 119 (323)
++..+-+....++++...+.+++....+.+ +|++++|.++.+..+.+++......|++.+. .|. .++++ +
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~-~~~~~----~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR-QDISH----L 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc-ccCCH----H
Confidence 567788888999999999999999999999 9999999999999998875544455666644 221 11222 3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 020680 120 YMQRSWIVLFVCCVLLL-PLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLV 198 (323)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~ 198 (323)
..+....+....++... +.+.+++++...+ ++++. ...+++..+..++..+.....+.+++.++.+........
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 34445555566665443 3344555555444 44443 345777788888888888899999999999999998888
Q ss_pred HHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhcHHHHHHHHHHHHHHHHHHH
Q 020680 199 ALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLEN 278 (323)
Q Consensus 199 ~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 278 (323)
..++..++...+.+. ++|+.+..++..+++.+..+......+++ .+.++ ..+++..|++++.+.|........+
T Consensus 151 ~~i~~~~~~i~~~~~-~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~----~~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 151 AVVAGFTFAVVSAFF-WPGALAAILGYLVNSSVRTLLFGYFGRKI-YRPAL----HFSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHHHHHhccc-CCccc----eecHHHHHHHHhhhHHHHHHHHHHH
Confidence 887777776655543 68999999999999887766543332222 22111 1224568999999999999999999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 020680 279 WYYRILISMTGNLQNAEIAVDALSICMTINGWEM 312 (323)
Q Consensus 279 ~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~ 312 (323)
....++..+++++.+.+ +++.|+.+.++.++..
T Consensus 225 ~~~~~d~~~lg~~lg~~-~vG~Y~~A~~l~~~~~ 257 (492)
T PRK10459 225 LNTNIDTILIGRILGAE-VLGGYNLAYNVATVPP 257 (492)
T ss_pred HHhcCchhhhhHhhchH-hhhhHHHHHHHHHHHH
Confidence 99999999888775533 6788999988877643
No 30
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.52 E-value=7.8e-13 Score=118.14 Aligned_cols=133 Identities=25% Similarity=0.286 Sum_probs=120.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCC
Q 020680 33 TRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAK 112 (323)
Q Consensus 33 ~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~ 112 (323)
.+++++..|++++.+.|.+++++...+...+|+.+++++|++++++|+++.++.++ ...+..+++.+..|.+++++|++
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~ 286 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESL-LFMPAFGFGIAVSILVGQALGAG 286 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCC
Confidence 34567789999999999999999999999999999999999999999999999886 57889999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHH
Q 020680 113 RYYMLGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWM 166 (323)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 166 (323)
|+|+.++..+++..+...++++. .+++++.+++..++.+|+++.+.+..++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999775 4566689999999999999999988888764
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.47 E-value=8.7e-10 Score=93.88 Aligned_cols=237 Identities=14% Similarity=0.115 Sum_probs=163.1
Q ss_pred HHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 020680 60 MLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPL 138 (323)
Q Consensus 60 ~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (323)
.+++-..+++| +|+++.|.++....+..++......|+.... .+ ..++|+++.++..+.......+.++....+
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSL----VR-SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HH-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888 9999999999999998865433344554443 33 234556666776666665544444333222
Q ss_pred HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 020680 139 YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGV 218 (323)
Q Consensus 139 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi 218 (323)
...+...+ .+++ ...++....+..++..+.....+.+++.+|.+..........+....+..++.+. +.+.
T Consensus 78 ---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 11111233 3332 2234667777888889999999999999999999999999988775554444443 3478
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhHH
Q 020680 219 IGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGN-LQNAEIA 297 (323)
Q Consensus 219 ~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-lg~~~~~ 297 (323)
.+..++..++.++..+....+.+++ .+ .++ +.+.. +..+.+.|..+..+.......+...+++. +|.+ +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--~ 218 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRK-LR--LSF----KFSWR-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPE--A 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cC--CCc----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--H
Confidence 8888998888888776555433322 11 111 11222 37899999999999999999999999999 7643 6
Q ss_pred HHHHHHHHHHHHHHH-HHHhhhhh
Q 020680 298 VDALSICMTINGWEM-MIPLAFFA 320 (323)
Q Consensus 298 ~aa~~i~~~~~~~~~-~~~~~~~~ 320 (323)
+|.|+++.++..... ++..++++
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~ 242 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISS 242 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999777 78877765
No 32
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.39 E-value=2.7e-10 Score=106.65 Aligned_cols=267 Identities=12% Similarity=0.056 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchhhH
Q 020680 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (323)
Q Consensus 39 ~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~ 117 (323)
..+++.|.+.....+++...+..++-...+++ +|+++.|.++.+..+..++......|+..+....++++..++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45678888899999999999999999999999 99999999999999998766555688888888888888766665555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 020680 118 GVY-MQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVS 196 (323)
Q Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 196 (323)
... ....+......+.+.........+. +++ ....+++..++.+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DPV----LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 555 4444444444444433333333222 222 33457888899999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhcHHHHHHHHHHHHHHHHH
Q 020680 197 LVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCL 276 (323)
Q Consensus 197 ~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 276 (323)
+.. ..-......+.. .......++..++..........+..+++...... ..+..++..|+.++.+.|.......
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRP-ILRFSLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccCchhHHHHHHHHHhhHHHHHHHH
Confidence 444 222222222221 23455566666666665555554544221111111 1112457899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 020680 277 ENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAG 321 (323)
Q Consensus 277 ~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a 321 (323)
..+...+++.+++.+-+. .+++.|+...++......+..+++.+
T Consensus 229 ~~l~~~~D~~~i~~~l~~-~~vG~Y~~a~~i~~~~~~~~~~l~~~ 272 (480)
T COG2244 229 NFLFTNIDTLLLGLFLGP-AQVGIYSAAQRLVSLLLIVASALNRV 272 (480)
T ss_pred HHHHHHHHHHHHHHHhhh-hHheecccccHHHHHHHHHHHHHHHH
Confidence 999999999999888653 35678898888888888888777653
No 33
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.26 E-value=2e-11 Score=112.47 Aligned_cols=204 Identities=16% Similarity=0.071 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCch
Q 020680 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGD--IELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (323)
Q Consensus 37 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~--~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~ 114 (323)
.+.++++++.+.|..+...++.....+-....|.++. .++++.++...+... .+.+..+++.+..+.+++.+|+++.
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~-~~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGW-HLMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHcCCCh
Confidence 8889999999999999999999999999999999875 688999999988775 5778889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHH
Q 020680 115 YMLGVYMQRSWIVLFVCCVL-LLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (323)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 193 (323)
++++.....+...++.+++. ....+.+.+.+...|+.|+|+.+...+..+++++.....+.+.+..+..+|.|..+...
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 99999999999999888855 45666788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHH
Q 020680 194 WVSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVS 241 (323)
Q Consensus 194 ~~~~~~~-~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~ 241 (323)
+.++... ++.++....+.+..++|..|.|++...+..+..........
T Consensus 402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~ 450 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTA 450 (473)
T ss_pred EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHhee
Confidence 9999888 77888888888778899999999999986666555544433
No 34
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.93 E-value=2.3e-07 Score=72.23 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=74.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHh
Q 020680 163 SIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (323)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~ 242 (323)
+++++++.++..+.......+++.||++..++.++++.++|+++++++++. +|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999888 999999999999999998888888777
Q ss_pred c
Q 020680 243 G 243 (323)
Q Consensus 243 ~ 243 (323)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 6
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.88 E-value=5.2e-07 Score=84.69 Aligned_cols=203 Identities=8% Similarity=-0.011 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCch--
Q 020680 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH---LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY-- 114 (323)
Q Consensus 40 ~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~-- 114 (323)
-++.++.+.....+.++..+.+--|++++.. ...++.|.|++++++-+++.-.++..+-...-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3568888999999999999999999999988 46679999999999999878888888999988888888765432
Q ss_pred -------hhHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 020680 115 -------YMLGVYMQRSWIVLFVCCVL-LLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQ 186 (323)
Q Consensus 115 -------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~ 186 (323)
++..+.....+++...+++. ...+-..++.++.++++++...+.+...+++++...|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 34555666667777777744 4455557777778776655555557788999999999999999999999999
Q ss_pred CchhHHHHHHHHH---HHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 187 LKNMVIAWVSLVA---LLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 187 g~~~~~~~~~~~~---~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
.+.+.....+-.. .++.+..+|+|... ++|..|..+|.++...+..+...++.++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766554444 46667788888876 79999999999999999999888888766
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.87 E-value=1.3e-05 Score=68.35 Aligned_cols=250 Identities=14% Similarity=0.078 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCc
Q 020680 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL--GD-IELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (323)
Q Consensus 37 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~-~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~ 113 (323)
....+++.++-+|..++.....+...+-+.-+++- .+ +.+|+|+++..+.-++ -.+...+-+... .+++++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl-----~~V~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGL-----VFVNSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHH-----HHhcch
Confidence 45678899999999999999999999999988873 22 4599999999987654 456655555433 444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHH-hhHHHH-HHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchh
Q 020680 114 YYMLGVYMQRSWIVLFVCCVLL-LPLYL-FASPVL-KLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNM 190 (323)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 190 (323)
+++. +........+.+..+.. .+.+- +...++ .+++.++++.+.+...+.++.+--++.++.....+++--.+++.
T Consensus 81 rsrr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSRR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 3322 22222222222222222 22222 444555 56788999999999999999999999999999999998778887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCc-chhHH---HHHHHHHHHH-HHHHHHHHhc-cccccccCCcHHHHhcHHHHH
Q 020680 191 VIAWVSLVALLVHIFVSWLFVNRMQLGV-IGTAA---TLNFSWWILV-FGLFGYVSCG-GCPLTWTGFTLEAFSGLWQFV 264 (323)
Q Consensus 191 ~~~~~~~~~~~~~i~l~~~li~~~~~Gi-~G~a~---a~~i~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 264 (323)
.....++...+..+++...++... +.. ..+++ +...+..+.+ .+.+.|+.+- +.........+.+...+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~~-l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSMH-LEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHccc-cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 777777777666666655555321 111 22222 2222222221 1222333222 222222222233446899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCch
Q 020680 265 KLSAASGVMLCLENWYYRILISMTGN-LQNA 294 (323)
Q Consensus 265 ~~~~p~~~~~~~~~~~~~~~~~~~~~-lg~~ 294 (323)
++..|.+........+--+.+.++++ +|..
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs 269 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGS 269 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 99999999999999999999999999 6654
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=2.1e-05 Score=70.10 Aligned_cols=200 Identities=9% Similarity=0.028 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchhhHH
Q 020680 42 KLWYIVGPAIFSRLASYSMLVITQAFAGH---LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLG 118 (323)
Q Consensus 42 ~il~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~ 118 (323)
+..+...-...+.++-.+.+-=|..++.. ++-++.|.|...++.-+++.-.+...+--..-...+|...+++.|+.+
T Consensus 240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k 319 (530)
T KOG2864|consen 240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVK 319 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHH
Confidence 34455555566667777777778888873 566788888888888777777778888888888888877666655555
Q ss_pred H---HHHHHHHHHHHHHHH-HHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHH
Q 020680 119 V---YMQRSWIVLFVCCVL-LLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (323)
Q Consensus 119 ~---~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 194 (323)
+ +....+.....+++. +..+...++..+.++++++.....+...+++++...|+.+++.+..+++.+.++.+..-.
T Consensus 320 ~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~ 399 (530)
T KOG2864|consen 320 KAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDK 399 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHh
Confidence 4 445555655666633 344555667777777766555555667899999999999999999999999988876553
Q ss_pred ---HHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 195 ---VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 195 ---~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
...+..++.++++|+++.. +|..|.-+|.++...+.-+..++++++.
T Consensus 400 ~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 400 HNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred cccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445557788999999998 8889999999999988888777776655
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.81 E-value=0.0002 Score=61.38 Aligned_cols=74 Identities=19% Similarity=0.089 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQA 108 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~ 108 (323)
..+++..|++++.+.|..++.+...+....|+.++++ .|++++|.|+.+.++.+.. ..+...+.+...|.++|.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 198 FFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRL 272 (273)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 4448889999999999999999999999999999999 8999999999999999874 678888889999999875
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.05 E-value=0.0061 Score=51.52 Aligned_cols=67 Identities=19% Similarity=0.113 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 020680 42 KLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQA 108 (323)
Q Consensus 42 ~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~ 108 (323)
+.++.+.|...+++.......+|..+++. +|++++|.|+.+.++.+.....+..+++....|..+|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 37999999999999999999999999999 99999999999999988643378899999999988873
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=95.21 E-value=2.1 Score=38.13 Aligned_cols=140 Identities=14% Similarity=0.180 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhHHHHHHhHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 020680 89 FDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIP 168 (323)
Q Consensus 89 ~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 168 (323)
+...+..|++...+..+|...=++|.+++.+.+.-...+....+..+.. ++-...++.... |=...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~si~-----yk~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYSIV-----YKILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchhHH-----HHHHHHH
Confidence 3455667777777788887777778888777766555544444432221 111112222111 1222334
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 169 LHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 169 ~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
.+..++..-+...++.+.+|.+...+.-.++.++.+.+..++- +.++.|.-++..++..+.......+..|.
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~ 211 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 4455566666777888999999999999999888888776654 35899999999999999888887777766
No 41
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=94.28 E-value=5.2 Score=38.25 Aligned_cols=266 Identities=9% Similarity=-0.056 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhHhCCCchhhHHHHHH
Q 020680 45 YIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIV-GFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQ 122 (323)
Q Consensus 45 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~ 122 (323)
+.+.-.++.+++..+.+++-+.++-| ++++.+|..++=..+.. .+.+.-=-++-.+.+..-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 44555677788888888777777666 99998887754433322 11112222566555543222211222333333333
Q ss_pred HHHHHHHHHHHHHHHHHH----hhHHHH--HHc-CCCHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhH-
Q 020680 123 RSWIVLFVCCVLLLPLYL----FASPVL--KLL-GQPDD---VAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMV- 191 (323)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~----~~~~i~--~~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~- 191 (323)
.+..+..++..++..+.+ ....+. ... ...++ ..+.....+.+...+.....+.+.+-...|..-+.+.
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 333333333332111111 111111 111 11111 1122333445555555555555555444444444443
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhh-cccCc-----ch-hHHHHHHHHHHHHHHHHHHHHh-c-ccccccc----CCcH-
Q 020680 192 ---IAWVSLVALLVHIFVSWLFVNR-MQLGV-----IG-TAATLNFSWWILVFGLFGYVSC-G-GCPLTWT----GFTL- 254 (323)
Q Consensus 192 ---~~~~~~~~~~~~i~l~~~li~~-~~~Gi-----~G-~a~a~~i~~~~~~~~~~~~~~~-~-~~~~~~~----~~~~- 254 (323)
-........+.+..+.+..... .+++. .+ +.++..++++...+........ . ...+.++ +...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 3334444344443333222111 01111 11 2345555665554433221111 1 1111111 1111
Q ss_pred --HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHH
Q 020680 255 --EAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGN--LQNAEIAVDALSICMTINGWE 311 (323)
Q Consensus 255 --~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--lg~~~~~~aa~~i~~~~~~~~ 311 (323)
.....-++.++.......+.+..++..+-...+++. +.+.+ +=+.|.+++|+-++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~-~QGvY~lv~N~GSLv 304 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFE-DQGVYALVSNYGSLV 304 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHH-HhhHHHHHhhHHHHH
Confidence 011124678888999989999999999988888888 55532 335788888877654
No 42
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.25 E-value=58 Score=30.27 Aligned_cols=187 Identities=14% Similarity=-0.004 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcChHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhHhCCCchhhH
Q 020680 40 SKKLWYIVGPAIFSRLASYSMLVITQAFA-GHLGDIELAAISIANNVIVG-FDFGLLLGMASALETLCGQAFGAKRYYML 117 (323)
Q Consensus 40 ~~~il~~~~p~~~~~~~~~~~~~i~~~~i-~~lg~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~~s~~~g~~~~~~~ 117 (323)
..+-.+.+.-.+..+++..+.+++-+.++ .+++++.+|..++=..+..- +.+.-=-++.-+..+.-++. +++..+.
T Consensus 7 L~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te~ 84 (530)
T KOG2864|consen 7 LESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTEF 84 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHHH
Confidence 33445555556666666666666655555 44999999988776555442 11111224444433322221 1234456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 020680 118 GVYMQRSWIVLFVCCVLLLPLYL-FASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVS 196 (323)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 196 (323)
.+..+.+..+..+..++++-+++ +....-.....+ .-...+.+...+...-.+...+--..|..-+.+.-.+..
T Consensus 85 ~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p-----~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e 159 (530)
T KOG2864|consen 85 INLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSP-----LYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAE 159 (530)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCc-----hHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh
Confidence 66666666666666554433332 111111110111 112223344444444445555555555555555556666
Q ss_pred HHHHHHHHHHHHHHHhh--cccCcchhHHHHHHHHHHHH
Q 020680 197 LVALLVHIFVSWLFVNR--MQLGVIGTAATLNFSWWILV 233 (323)
Q Consensus 197 ~~~~~~~i~l~~~li~~--~~~Gi~G~a~a~~i~~~~~~ 233 (323)
....++.-+..+..... ..+++.--|+|.....+...
T Consensus 160 ~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~ 198 (530)
T KOG2864|consen 160 GLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLL 198 (530)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHH
Confidence 66665553333333332 13445555555544443333
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=72.09 E-value=77 Score=28.74 Aligned_cols=93 Identities=10% Similarity=0.065 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHH
Q 020680 116 MLGVYMQRSWIVLFVCCVL-LLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (323)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 194 (323)
+.....++.+.-..-+-.. ....+.+++.+..+++-++-.. +.+++-.++..+.......-...-=..+.+..+.
T Consensus 321 kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~l----~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~ 396 (467)
T COG4267 321 KMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYYL----DLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALE 396 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3334444444444434333 3455557888888887655322 2355555555444444444444444566777777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 020680 195 VSLVALLVHIFVSWLFVN 212 (323)
Q Consensus 195 ~~~~~~~~~i~l~~~li~ 212 (323)
.+..-.+.|.++++++..
T Consensus 397 ~t~~fli~N~ilT~i~l~ 414 (467)
T COG4267 397 LTALFLISNGILTFIFLE 414 (467)
T ss_pred hhhHHHHHhHHHHHHHHH
Confidence 787878889999888774
No 44
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=63.58 E-value=1.2e+02 Score=27.67 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=29.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHH-HcCCC
Q 020680 113 RYYMLGVYMQRSWIVLFVCCVL-LLPLYLFASPVLK-LLGQP 152 (323)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~-~~~~~ 152 (323)
++++.+++.+++...+.+.... ..++....-|+.. ..+.+
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999855 4556666666665 44433
No 45
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=62.77 E-value=47 Score=22.74 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=27.2
Q ss_pred HHHhHHHHHHhHhCCCchhhHHHHHHHHHHHHHHHHHH
Q 020680 97 MASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVL 134 (323)
Q Consensus 97 l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 134 (323)
++......+-..+.+||++++++.-+++..++.+-.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 33334455667778999999999999888877655443
No 46
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=58.09 E-value=45 Score=29.42 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCh-----HHHHHHHHHHHH
Q 020680 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGD-----IELAAISIANNV 85 (323)
Q Consensus 37 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~-----~~~a~~~~~~~~ 85 (323)
....++++++.+|.......+.+..-+-+.++++ +|. ++++.....+++
T Consensus 231 ~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypv 285 (345)
T PF07260_consen 231 SATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPV 285 (345)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCC
Confidence 4568889999999999999999999999999999 643 344444444443
No 47
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=50.06 E-value=62 Score=29.71 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSM 60 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~ 60 (323)
+.+.+..|.++++.+|..+..+.+...
T Consensus 236 ~~k~~~~k~Ll~ymiPL~lVY~aEY~I 262 (402)
T PF02487_consen 236 KEKLKRLKPLLWYMIPLFLVYFAEYFI 262 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888888877777654
No 48
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=48.25 E-value=1.3e+02 Score=27.08 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=41.7
Q ss_pred CCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 020680 21 TVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVG 88 (323)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~ 88 (323)
++..+++++++..+..+...|++.-.+.-.++......-........-..+|+..+++...+.....+
T Consensus 9 ~~~~s~~~~~~~~r~~~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg~~sl~~~y~~l~~s~m 76 (390)
T KOG3097|consen 9 NYNESEEEERRYRRKRLGILKNVLILSIAFLLTFTAYLGLQNLQTSVNYDLGTVSLGALYLSLIDSSM 76 (390)
T ss_pred CCCCCCcccchhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHH
Confidence 33333333334556667778888888777777666655555555554445788877776666555443
No 49
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=46.17 E-value=1.5e+02 Score=23.64 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=20.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 217 GVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 217 Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
++.|...++.+++++..++...|..+.
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 455777888888888888777776655
No 50
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=39.22 E-value=2.1e+02 Score=25.63 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=15.9
Q ss_pred CcHHHHhcHHHHHHHHHHHHHH
Q 020680 252 FTLEAFSGLWQFVKLSAASGVM 273 (323)
Q Consensus 252 ~~~~~~~~~~~~l~~~~p~~~~ 273 (323)
..+.-+...++.+|.++|..+-
T Consensus 81 l~~~i~~~~~~~lk~~vPa~iY 102 (345)
T KOG2234|consen 81 LSKEILAAPRETLKVSVPALIY 102 (345)
T ss_pred cCHHHHhChHHHHHHHHHHHHH
Confidence 3444456677999999998763
No 51
>PRK03612 spermidine synthase; Provisional
Probab=37.58 E-value=3.7e+02 Score=25.68 Aligned_cols=46 Identities=28% Similarity=0.260 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHH
Q 020680 190 MVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLF 237 (323)
Q Consensus 190 ~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~~~ 237 (323)
+.+...++.+.+-.+...++++.. +|..+..+....-+++..++..
T Consensus 149 ~ly~~ntlGa~~G~l~~~~vLlp~--lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 149 TVLAADYLGALVGGLAFPFLLLPR--LGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred hhHhHHhHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHH
Confidence 444444444445556666666666 7777776655555555444333
No 52
>PF14184 YrvL: Regulatory protein YrvL
Probab=28.10 E-value=2.7e+02 Score=21.09 Aligned_cols=101 Identities=12% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 020680 126 IVLFVCCVLLLPLYLFASPVLKLLGQPDD-VAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHI 204 (323)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i 204 (323)
..++.+.+......+....+++++|-+-| ......-.+....++.|+.....++...+.-.+-++..... ....+..
T Consensus 9 ~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~~--l~~~id~ 86 (132)
T PF14184_consen 9 IIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFIL--LAFIIDF 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHH--HHHHHHH
Confidence 33334444444455566667777765422 12222333445556777777766666666655444443332 3336677
Q ss_pred HHHHHHHhhcccCcchhHHHHHHH
Q 020680 205 FVSWLFVNRMQLGVIGTAATLNFS 228 (323)
Q Consensus 205 ~l~~~li~~~~~Gi~G~a~a~~i~ 228 (323)
.+++..++..+.=+.+..+.+..-
T Consensus 87 ~~t~~~i~~aD~~m~sI~is~~~e 110 (132)
T PF14184_consen 87 LFTWITIYTADELMESISISTLSE 110 (132)
T ss_pred HHHHHHHHHHHHHhcceeeCcHHH
Confidence 777777776554466666655433
No 53
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=27.48 E-value=1.3e+02 Score=22.90 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchh
Q 020680 269 ASGVMLCLENWYYRILISMTGNLQNAE 295 (323)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~lg~~~ 295 (323)
|.+++++++.+.+.+.+.+++++|+++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~ 27 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEA 27 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 788999999999999999999998653
No 54
>PRK00523 hypothetical protein; Provisional
Probab=26.81 E-value=76 Score=21.09 Aligned_cols=23 Identities=26% Similarity=0.062 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 020680 220 GTAATLNFSWWILVFGLFGYVSC 242 (323)
Q Consensus 220 G~a~a~~i~~~~~~~~~~~~~~~ 242 (323)
|.|+...+-.++..++..+|+-|
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443333333333333333333
No 55
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.83 E-value=1.1e+02 Score=22.72 Aligned_cols=11 Identities=18% Similarity=0.030 Sum_probs=4.5
Q ss_pred chhHHHHHHHH
Q 020680 219 IGTAATLNFSW 229 (323)
Q Consensus 219 ~G~a~a~~i~~ 229 (323)
.|..++.+.+-
T Consensus 67 ~~Ii~gv~aGv 77 (122)
T PF01102_consen 67 IGIIFGVMAGV 77 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred eehhHHHHHHH
Confidence 34444444443
No 56
>TIGR00893 2A0114 d-galactonate transporter.
Probab=22.79 E-value=5.1e+02 Score=22.51 Aligned_cols=9 Identities=0% Similarity=-0.282 Sum_probs=3.6
Q ss_pred HHHHhHhCC
Q 020680 103 TLCGQAFGA 111 (323)
Q Consensus 103 ~~~s~~~g~ 111 (323)
...++..++
T Consensus 272 g~~~~~~~~ 280 (399)
T TIGR00893 272 GRLSDLLLR 280 (399)
T ss_pred HHHHHHHhh
Confidence 334444433
No 57
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=22.52 E-value=2.7e+02 Score=19.30 Aligned_cols=38 Identities=3% Similarity=0.020 Sum_probs=27.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC
Q 020680 113 RYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLG 150 (323)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (323)
|++..-+...+++++.++.+.|-.+.-...+-+++++.
T Consensus 2 ~~~~i~~~~~qaL~liLilSlPpvivAsvvGllVslvQ 39 (89)
T COG4794 2 DMDDIVFLTSQALWLILILSLPPVIVASVVGLLVSLVQ 39 (89)
T ss_pred cHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45677888899999999998776555555555666553
No 58
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=20.88 E-value=4.8e+02 Score=22.76 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhc
Q 020680 231 ILVFGLFGYVSCG 243 (323)
Q Consensus 231 ~~~~~~~~~~~~~ 243 (323)
+.++..+++++|+
T Consensus 303 ~i~~~~~~~fkrk 315 (318)
T TIGR00383 303 VIALGPLIYFRRK 315 (318)
T ss_pred HHHHHHHHHHHHc
Confidence 3344455555554
No 59
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=20.27 E-value=6.7e+02 Score=22.94 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcccCcchhHHHHHHHHHHHHH
Q 020680 204 IFVSWLFVNRMQLGVIGTAATLNFSWWILVF 234 (323)
Q Consensus 204 i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~ 234 (323)
.+.+.+++.. +|-.|.++||..-.++..+
T Consensus 75 alaT~~~irl--~Gd~GvaIAt~~mT~vilv 103 (423)
T COG4536 75 ALATILGIRL--YGDAGVAIATGVLTFVILV 103 (423)
T ss_pred HHHHHHHHHH--hccchHHHHHHHHHHHHHH
Confidence 3344555555 8999999998765555443
No 60
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=20.09 E-value=5.1e+02 Score=22.96 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=11.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 020680 187 LKNMVIAWVSLVALLVHIFVSWLFVNRM 214 (323)
Q Consensus 187 g~~~~~~~~~~~~~~~~i~l~~~li~~~ 214 (323)
+.....-+.++++.++-.+--+.-+++.
T Consensus 251 ~~N~~mk~lTv~s~if~pptliagiyGM 278 (316)
T PRK11085 251 EQNRIIKIFSVVSVVFLPPTLVASSYGM 278 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3333444444444444444333334443
Done!