Query 020680
Match_columns 323
No_of_seqs 220 out of 1841
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 06:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 4.2E-32 1.4E-36 250.4 23.9 287 33-322 4-297 (460)
2 3mkt_A Multi antimicrobial ext 99.9 1.1E-23 3.7E-28 194.2 20.0 209 34-243 231-446 (460)
3 1pw4_A Glycerol-3-phosphate tr 66.0 66 0.0023 27.8 24.4 18 39-56 26-43 (451)
4 2k1k_A Ephrin type-A receptor 34.9 42 0.0015 18.4 3.0 16 218-233 13-28 (38)
5 4hkr_A Calcium release-activat 31.5 1.9E+02 0.0064 22.6 16.0 81 73-154 57-145 (214)
6 2ks1_B Epidermal growth factor 30.2 79 0.0027 17.9 4.5 26 218-243 13-38 (44)
7 2jwa_A Receptor tyrosine-prote 27.5 82 0.0028 17.9 3.4 10 234-243 29-38 (44)
8 2l2t_A Receptor tyrosine-prote 22.9 1.1E+02 0.0039 17.3 4.0 8 236-243 30-37 (44)
9 3o7q_A L-fucose-proton symport 11.7 6.6E+02 0.023 21.1 26.0 31 42-72 27-57 (438)
10 4ev6_A Magnesium transport pro 10.1 5.7E+02 0.019 21.4 6.3 23 220-243 314-336 (339)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=4.2e-32 Score=250.44 Aligned_cols=287 Identities=17% Similarity=0.282 Sum_probs=257.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCC
Q 020680 33 TRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAK 112 (323)
Q Consensus 33 ~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~ 112 (323)
....+++.|++++.++|.+++++...+.+.+|+.+++++|++++++++.+.++..+ ...+..+++.+..+.+++++|++
T Consensus 4 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~ 82 (460)
T 3mkt_A 4 VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAG 82 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567889999999999999999999999999999999999999999999999775 46778999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHH
Q 020680 113 RYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (323)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 192 (323)
|+|+.++.+++++.+..+++++..+++.+.++++.+++.+++..+.+..|++++.++.++..+..+..+++|+.||++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 83 RQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999776666778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-c---ccCcchhHHHHHHHHHHHHHHHHHHHHhcccccc---ccCCcHHHHhcHHHHHH
Q 020680 193 AWVSLVALLVHIFVSWLFVNR-M---QLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLT---WTGFTLEAFSGLWQFVK 265 (323)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~-~---~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~ 265 (323)
++.++++.++|+++++++++. + ++|+.|+++++.+++++..++..+++++++...+ ++++.+.+++.+|++++
T Consensus 163 ~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (460)
T 3mkt_A 163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHH
Confidence 999999999999999999975 3 6999999999999999999988888776632221 12223445678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 020680 266 LSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGT 322 (323)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~ 322 (323)
.+.|..+....+.+.+.+.+.+++++|++ ++++|+++.++.++..+++.+++++.
T Consensus 243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~ 297 (460)
T 3mkt_A 243 LGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAV 297 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999864 67799999999999999999998764
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.92 E-value=1.1e-23 Score=194.16 Aligned_cols=209 Identities=13% Similarity=0.085 Sum_probs=191.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCc
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~ 113 (323)
+.+++..|++++.+.|..++++...+...+|+.+++++|++++++|+++.++.++ ...+..+++.+..|.+++++|++|
T Consensus 231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~ 309 (460)
T 3mkt_A 231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQD 309 (460)
T ss_dssp SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4456778999999999999999999999999999999999999999999999987 468899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHH
Q 020680 114 YYMLGVYMQRSWIVLFVCCVLL-LPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (323)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 192 (323)
+|+.++..+++..+...++++. .+++.+++++..++..|+++.+.+..++++++++.++.+++.+..+++++.||++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 389 (460)
T 3mkt_A 310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI 389 (460)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 9999999999999999999775 556668999999998888888889999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhh----cc-cCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 193 AWVSLVAL-LVHIFVSWLFVNR----MQ-LGVIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 193 ~~~~~~~~-~~~i~l~~~li~~----~~-~Gi~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
++.++++. ++++++++++.+. .+ +|+.|+|+|+.+++++..++..++++|+
T Consensus 390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999987 67 9999999999999999888776655544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=65.98 E-value=66 Score=27.85 Aligned_cols=18 Identities=11% Similarity=-0.252 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020680 39 ESKKLWYIVGPAIFSRLA 56 (323)
Q Consensus 39 ~~~~il~~~~p~~~~~~~ 56 (323)
.++.+.....-.+.....
T Consensus 26 ~~~~~~~~~~~~~~~~~~ 43 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLV 43 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=34.92 E-value=42 Score=18.36 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=7.6
Q ss_pred cchhHHHHHHHHHHHH
Q 020680 218 VIGTAATLNFSWWILV 233 (323)
Q Consensus 218 i~G~a~a~~i~~~~~~ 233 (323)
+.|+.++.+.+-.+..
T Consensus 13 IAGiVvG~v~gv~li~ 28 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLL 28 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHH
Confidence 3455555554444333
No 5
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=31.45 E-value=1.9e+02 Score=22.64 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH--------hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020680 73 DIELAAISIANNVIVGFDFGLLLGMASALETLCGQA--------FGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASP 144 (323)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (323)
+.-+.+|++.+.+.-. ...+..-+++-+.|.+-.. ..+.-.++.+.++..+..++..+|+++.+.-...--
T Consensus 57 ~~LLi~fav~Ttllv~-vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 57 PGMLIAFAICTTLLVA-VHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp --CHHHHHHHHHHHHH-HHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457788888877653 3455555666655554433 224456788889998888888888766555444555
Q ss_pred HHHHcCCCHH
Q 020680 145 VLKLLGQPDD 154 (323)
Q Consensus 145 i~~~~~~~~~ 154 (323)
+++++..+..
T Consensus 136 WVKF~~~~~~ 145 (214)
T 4hkr_A 136 WVKFYDLSRR 145 (214)
T ss_dssp HHHHTTTCHH
T ss_pred eEEeecCCcH
Confidence 6667665543
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=30.24 E-value=79 Score=17.95 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=10.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 218 VIGTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 218 i~G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
+.+..++-++.-.+..+..++|++++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 33333333333333334444455544
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=27.53 E-value=82 Score=17.89 Aligned_cols=10 Identities=0% Similarity=-0.360 Sum_probs=4.6
Q ss_pred HHHHHHHHhc
Q 020680 234 FGLFGYVSCG 243 (323)
Q Consensus 234 ~~~~~~~~~~ 243 (323)
+....|++|+
T Consensus 29 l~~~~~~RRR 38 (44)
T 2jwa_A 29 VVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheehh
Confidence 3334455554
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.88 E-value=1.1e+02 Score=17.30 Aligned_cols=8 Identities=25% Similarity=0.173 Sum_probs=3.4
Q ss_pred HHHHHHhc
Q 020680 236 LFGYVSCG 243 (323)
Q Consensus 236 ~~~~~~~~ 243 (323)
.++|++++
T Consensus 30 ~~~~~RRR 37 (44)
T 2l2t_A 30 FAVYVRRK 37 (44)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhh
Confidence 33444444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=11.74 E-value=6.6e+02 Score=21.07 Aligned_cols=31 Identities=6% Similarity=0.013 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020680 42 KLWYIVGPAIFSRLASYSMLVITQAFAGHLG 72 (323)
Q Consensus 42 ~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg 72 (323)
.++-...-.++..............+...+|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 57 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFT 57 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 3444444444444444444444444444444
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=10.06 E-value=5.7e+02 Score=21.37 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 020680 220 GTAATLNFSWWILVFGLFGYVSCG 243 (323)
Q Consensus 220 G~a~a~~i~~~~~~~~~~~~~~~~ 243 (323)
|.+++..+. ++.++..+++++|+
T Consensus 314 gy~~~l~~m-~~~~~~~~~~fkrk 336 (339)
T 4ev6_A 314 GFWLVMALM-VVIIMIFVYIFRRS 336 (339)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHc
Confidence 444443333 33444445555554
Done!