Query 020680
Match_columns 323
No_of_seqs 220 out of 1841
Neff 10.0
Searched_HMMs 13730
Date Mon Mar 25 06:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020680.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020680hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 67.6 28 0.002 27.9 19.4 28 215-242 406-433 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 38.5 79 0.0058 24.2 18.6 9 216-224 376-384 (417)
3 d1m56d_ f.23.8.1 (D:) Bacteria 4.9 2.5E+02 0.018 14.3 4.2 26 108-133 3-28 (42)
4 d2yvxa3 f.57.1.1 (A:276-448) M 4.7 5.1E+02 0.037 17.6 6.8 38 98-135 56-95 (173)
5 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.6 7.6E+02 0.055 18.0 11.0 65 171-235 90-155 (261)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 3.5 1.6E+02 0.012 17.8 0.9 22 259-280 60-81 (91)
7 d2ok5a4 g.18.1.1 (A:9-76) Comp 3.0 2.3E+02 0.017 16.2 1.1 11 3-13 45-55 (68)
8 d1xmeb2 f.17.2.1 (B:3-36) Bact 2.9 3.3E+02 0.024 12.4 3.1 13 222-234 16-28 (34)
9 d2inwa1 d.110.8.1 (A:4-120) Hy 2.9 1.7E+02 0.012 18.7 0.4 25 34-58 49-73 (117)
10 d1xmec1 f.23.9.1 (C:2-34) Bact 2.9 3.3E+02 0.024 12.5 1.8 22 201-224 10-31 (33)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=67.63 E-value=28 Score=27.94 Aligned_cols=28 Identities=14% Similarity=-0.090 Sum_probs=14.2
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHh
Q 020680 215 QLGVIGTAATLNFSWWILVFGLFGYVSC 242 (323)
Q Consensus 215 ~~Gi~G~a~a~~i~~~~~~~~~~~~~~~ 242 (323)
.+|..+..+......++..++......+
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666555555555554444444333
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=38.52 E-value=79 Score=24.22 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=4.1
Q ss_pred cCcchhHHH
Q 020680 216 LGVIGTAAT 224 (323)
Q Consensus 216 ~Gi~G~a~a 224 (323)
+|.....+.
T Consensus 376 ~g~~~~~~~ 384 (417)
T d1pv7a_ 376 IGFQGAYLV 384 (417)
T ss_dssp HCHHHHHHH
T ss_pred HCHHHHHHH
Confidence 455444433
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.91 E-value=2.5e+02 Score=14.28 Aligned_cols=26 Identities=8% Similarity=-0.128 Sum_probs=14.4
Q ss_pred HhCCCchhhHHHHHHHHHHHHHHHHH
Q 020680 108 AFGAKRYYMLGVYMQRSWIVLFVCCV 133 (323)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 133 (323)
..|+=|.+...+.+...+.+..-.++
T Consensus 3 kHG~MDi~vQEKTF~gFik~~t~~~i 28 (42)
T d1m56d_ 3 VAGSMDITQQEKTFAGFVRMVTWAAV 28 (42)
T ss_dssp CTTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655555554443
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.66 E-value=5.1e+02 Score=17.59 Aligned_cols=38 Identities=13% Similarity=-0.052 Sum_probs=21.8
Q ss_pred HHhHHHHHHhHh--CCCchhhHHHHHHHHHHHHHHHHHHH
Q 020680 98 ASALETLCGQAF--GAKRYYMLGVYMQRSWIVLFVCCVLL 135 (323)
Q Consensus 98 ~~~~~~~~s~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (323)
++-..+.+-|.+ |+-+.++.++...+=...++..+..+
T Consensus 56 G~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l 95 (173)
T d2yvxa3 56 GNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTL 95 (173)
T ss_dssp HHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 333334455554 44355567777777777777666543
No 5
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.59 E-value=7.6e+02 Score=17.98 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHH
Q 020680 171 FSFAFQFPLQRFLQSQL-KNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFG 235 (323)
Q Consensus 171 ~~~~~~~~~~~~l~a~g-~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~G~a~a~~i~~~~~~~~ 235 (323)
.....-.+.+.++.+.- ++|...+..-+...+.+...-...+.+.||-.+-|-+++++++...+-
T Consensus 90 ~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~iP 155 (261)
T d3cx5c2 90 FMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (261)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhcC
Confidence 33344566666666554 567777777666655555555555666799999999999999877664
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.51 E-value=1.6e+02 Score=17.75 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 020680 259 GLWQFVKLSAASGVMLCLENWY 280 (323)
Q Consensus 259 ~~~~~l~~~~p~~~~~~~~~~~ 280 (323)
...|+.-..+|..+...+...+
T Consensus 60 ~~lEi~WtiIP~iil~~iav~s 81 (91)
T d1fftb2 60 NKVEAVVWTVPILIIIFLAVLT 81 (91)
T ss_dssp SHHHHHTTHHHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHHHHHHHH
Confidence 3457778888987765554433
No 7
>d2ok5a4 g.18.1.1 (A:9-76) Complement factor B {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.99 E-value=2.3e+02 Score=16.22 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=7.8
Q ss_pred CCCCCCCccCC
Q 020680 3 SNGALEDTKVP 13 (323)
Q Consensus 3 ~~~~~~~~~~~ 13 (323)
+||.|.+++.+
T Consensus 45 ~~G~Ws~lr~~ 55 (68)
T d2ok5a4 45 STGSWSTLKTQ 55 (68)
T ss_dssp TTSSBCCCBCT
T ss_pred CCCcccccccC
Confidence 57888777654
No 8
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=2.94 E-value=3.3e+02 Score=12.44 Aligned_cols=13 Identities=0% Similarity=0.105 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 020680 222 AATLNFSWWILVF 234 (323)
Q Consensus 222 a~a~~i~~~~~~~ 234 (323)
|++..++.+..++
T Consensus 16 wlafslamlfvfi 28 (34)
T d1xmeb2 16 WLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555444443
No 9
>d2inwa1 d.110.8.1 (A:4-120) Hypothetical protein YeeU {Shigella flexneri [TaxId: 623]}
Probab=2.91 E-value=1.7e+02 Score=18.72 Aligned_cols=25 Identities=8% Similarity=-0.112 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 020680 34 RTIWVESKKLWYIVGPAIFSRLASY 58 (323)
Q Consensus 34 ~~~~~~~~~il~~~~p~~~~~~~~~ 58 (323)
....+....-+-.++|.++.++-..
T Consensus 49 G~Fs~~~~~~Ld~aFP~~ikqlE~m 73 (117)
T d2inwa1 49 GRFSDVDAYHLDQAFPLLMKQLELM 73 (117)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556666788899988776443
No 10
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=2.90 E-value=3.3e+02 Score=12.48 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccCcchhHHH
Q 020680 201 LVHIFVSWLFVNRMQLGVIGTAAT 224 (323)
Q Consensus 201 ~~~i~l~~~li~~~~~Gi~G~a~a 224 (323)
++.+..-.+++++ +|+....++
T Consensus 10 vi~il~l~ilvfw--~gv~avf~a 31 (33)
T d1xmec1 10 VILVLTLTILVFW--LGVYAVFFA 31 (33)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHhc
Done!