BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>020681
MAGSGCAVKGGCPTDYIALAIASLFFILLLARFILPFVVHKVPRTKSSGFWIPVIQVFAS
FNLLLSLVLSDNFLKFQRRRWWQSCYIWGVWIEGPLGFGLLMSCRIAQAFQLYYIFVRKH
LPPIRSYVFLPLVLMPWLIAATFIQVMRPLNDRCHMRVHWIIPFLFLHVVYVASLVGFMA
AIRHIEFRFDELRDLWQGIIVSASSIGLWVFAYLLNEIHDDISWLQVASRFLLLVMGGIL
VVVFFSISSSEPLLSQISLRKREPKEFETMGQALGIPDSGLLLRREPTPVIDPNEPLDKL
LLNKKFRQSFMAFADRRECSFL

High Scoring Gene Products

Symbol, full name Information P value
RGS1
AT3G26090
protein from Arabidopsis thaliana 2.2e-96

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  020681
        (322 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2092180 - symbol:RGS1 "AT3G26090" species:3702...   958  2.2e-96   1


>TAIR|locus:2092180 [details] [associations]
            symbol:RGS1 "AT3G26090" species:3702 "Arabidopsis
            thaliana" [GO:0005737 "cytoplasm" evidence=IBA] [GO:0038032
            "termination of G-protein coupled receptor signaling pathway"
            evidence=IEA] [GO:0005096 "GTPase activator activity" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0042127 "regulation
            of cell proliferation" evidence=IMP] [GO:0043547 "positive
            regulation of GTPase activity" evidence=IDA] [GO:0009749 "response
            to glucose stimulus" evidence=RCA;IMP] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=RCA;IMP] [GO:0009737 "response to abscisic acid stimulus"
            evidence=IMP] [GO:0004930 "G-protein coupled receptor activity"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0010182 "sugar mediated signaling pathway" evidence=IMP]
            [GO:0007165 "signal transduction" evidence=RCA] [GO:0009611
            "response to wounding" evidence=RCA] [GO:0009723 "response to
            ethylene stimulus" evidence=RCA] [GO:0009733 "response to auxin
            stimulus" evidence=RCA] [GO:0009738 "abscisic acid mediated
            signaling pathway" evidence=RCA] [GO:0009744 "response to sucrose
            stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
            evidence=RCA] [GO:0009753 "response to jasmonic acid stimulus"
            evidence=RCA] [GO:0042538 "hyperosmotic salinity response"
            evidence=RCA] [GO:0010008 "endosome membrane" evidence=IDA]
            InterPro:IPR000342 InterPro:IPR016137 Pfam:PF00615 PROSITE:PS50132
            SMART:SM00315 GO:GO:0005886 GO:GO:0009737 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB023041 GO:GO:0005096
            GO:GO:0004930 GO:GO:0009414 GO:GO:0009749 GO:GO:0010182
            GO:GO:0010008 GO:GO:0042127 GO:GO:0038032 SUPFAM:SSF48097
            EMBL:AY091142 EMBL:AY150429 IPI:IPI00522290 IPI:IPI00529304
            RefSeq:NP_189238.2 UniGene:At.37280 UniGene:At.43902
            ProteinModelPortal:Q8H1F2 SMR:Q8H1F2 IntAct:Q8H1F2
            MINT:MINT-6743110 STRING:Q8H1F2 PRIDE:Q8H1F2
            EnsemblPlants:AT3G26090.1 GeneID:822207 KEGG:ath:AT3G26090
            TAIR:At3g26090 eggNOG:NOG266976 HOGENOM:HOG000006273
            InParanoid:Q8H1F2 OMA:PNEPLDK PhylomeDB:Q8H1F2
            ProtClustDB:CLSN2690570 Genevestigator:Q8H1F2 Uniprot:Q8H1F2
        Length = 459

 Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
 Identities = 173/312 (55%), Positives = 212/312 (67%)

Query:     4 SGCAVKGGCPTDYXXXXXXXXXXXXXXXXXXXXXVVHKVPRTKSSGFWIPVIQXXXXXXX 63
             SGCA+ GGCP+DY                     ++HK PRT SS FWIPVIQ       
Sbjct:     3 SGCALHGGCPSDYVAVAISVICFFVLLSRSVLPCLIHKAPRTNSSSFWIPVIQVISSFNL 62

Query:    64 XXXXXXXXXXXKFQRRRWWQSCYIWGVWIEGPLGFGLLMSCRIAQAFQLYYIFVRKHLPP 123
                        +F+ + WW+ CY+W VWIEGPLGFGLLMSCRI QAFQLY+IFV+K LPP
Sbjct:    63 LFSIMMSVNLLRFRTKHWWRYCYLWAVWIEGPLGFGLLMSCRITQAFQLYFIFVKKRLPP 122

Query:   124 IRSYVFLPLVLMPWLIAATFIQVMRPLNDRCHMRVHWIIPFLFLHVVYVASLVGFMAAIR 183
             ++SY+FLPLVL+PW+  A  I   +PLND+CHM + W  P   LH +YV +L+ F  A+R
Sbjct:   123 VKSYIFLPLVLLPWIFGAAIIHATKPLNDKCHMGLQWTFPVAGLHALYVLALIAFTRAVR 182

Query:   184 HIEFRFDELRDLWQGIIVSASSIGLWVFAYLLNEIHDDISWLQVASRXXXXXXXXXXXXX 243
             H+EFRFDELRDLW+GI+VSA+SI +WV A++LNEIH++ISWLQVASR             
Sbjct:   183 HVEFRFDELRDLWKGILVSATSIVIWVTAFVLNEIHEEISWLQVASRFVLLVTGGILVVV 242

Query:   244 XXXXXXXEPLLSQISLRKREPKEFETMGQALGIPDSGLLLRREPTPVIDPNEPLDKLLLN 303
                    +PLLSQISL+KR+  EF+ MGQALGIPDSGLL R+E    +DPNEPLDKLLLN
Sbjct:   243 FFSISSNQPLLSQISLKKRQNFEFQRMGQALGIPDSGLLFRKEEFRPVDPNEPLDKLLLN 302

Query:   304 KKFRQSFMAFAD 315
             K+FR SFM FAD
Sbjct:   303 KRFRHSFMEFAD 314


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.144   0.482    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      322       263   0.00091  114 3  11 21  0.50    32
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  225 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.76u 0.11s 19.87t   Elapsed:  00:00:01
  Total cpu time:  19.76u 0.11s 19.87t   Elapsed:  00:00:01
  Start:  Fri May 10 03:54:54 2013   End:  Fri May 10 03:54:55 2013

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