Query 020681
Match_columns 322
No_of_seqs 10 out of 12
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 04:18:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00003 7tm_3: 7 transmembran 96.0 0.012 2.6E-07 49.3 4.9 166 40-214 17-204 (238)
2 PF12553 DUF3742: Protein of u 39.0 11 0.00025 28.1 0.3 13 89-101 34-46 (54)
3 PF13858 DUF4199: Protein of u 36.0 53 0.0011 26.5 3.7 64 198-276 3-69 (163)
4 PF14667 Polysacc_synt_C: Poly 32.3 2.3E+02 0.0049 21.6 7.2 33 174-206 70-102 (146)
5 PF08815 Nuc_rec_co-act: Nucle 30.7 21 0.00045 27.2 0.5 27 252-278 8-36 (51)
6 PF04129 Vps52: Vps52 / Sac2 f 30.5 34 0.00074 33.9 2.1 101 34-139 267-386 (508)
7 PF06570 DUF1129: Protein of u 30.2 1.4E+02 0.0031 25.9 5.6 51 188-240 139-190 (206)
8 COG3620 Predicted transcriptio 28.3 33 0.00071 31.7 1.4 19 279-299 133-151 (187)
9 COG0828 RpsU Ribosomal protein 27.2 45 0.00097 26.3 1.8 21 287-309 2-22 (67)
10 PF07725 LRR_3: Leucine Rich R 25.2 25 0.00055 22.1 0.1 16 184-199 4-19 (20)
11 PLN03232 ABC transporter C fam 25.2 65 0.0014 35.9 3.3 114 84-212 31-153 (1495)
12 PF12149 HSV_VP16_C: Herpes si 24.9 32 0.00069 23.8 0.6 18 263-280 11-29 (30)
13 PF08009 CDP-OH_P_tran_2: CDP- 24.1 96 0.0021 22.1 2.9 24 159-182 3-26 (39)
14 PF08228 RNase_P_pop3: RNase P 23.4 33 0.00072 30.2 0.6 18 268-285 114-131 (158)
15 PF08261 Carcinustatin: Carcin 22.7 34 0.00073 17.9 0.3 8 93-100 1-8 (8)
16 KOG1586 Protein required for f 22.2 20 0.00042 34.9 -1.2 18 305-322 220-237 (288)
17 COG4858 Uncharacterized membra 21.3 91 0.002 29.5 3.0 21 195-215 161-181 (226)
18 PF09163 Form-deh_trans: Forma 21.2 94 0.002 22.7 2.4 23 191-213 3-25 (44)
19 PF04942 CC: CC domain; Inter 20.5 20 0.00043 24.8 -1.1 13 7-19 15-27 (36)
20 COG4252 Predicted transmembran 20.1 1.3E+02 0.0027 30.2 3.8 25 49-75 371-395 (400)
No 1
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.00 E-value=0.012 Score=49.28 Aligned_cols=166 Identities=21% Similarity=0.271 Sum_probs=98.6
Q ss_pred eecCCCCCCceeehHhHHHHHHHHHHHHHhhhchhhhchhhhhhhhHhhhhhhcccccchhhhhhhHhhhhhhhhheecc
Q 020681 40 HKVPRTKSSGFWIPVIQVFASFNLLLSLVLSDNFLKFQRRRWWQSCYIWGVWIEGPLGFGLLMSCRIAQAFQLYYIFVRK 119 (322)
Q Consensus 40 hk~prt~~s~fwipvIQv~aSfnlL~Si~mS~N~lkf~~~hwwq~Cylw~vW~eGPlGFGlLlSCrI~QAfqLy~IFVkr 119 (322)
.|.|--++|+...-.+-.++.+-+..|..+.. .+-+. ..|.+- .|. -++||.+..++=+++++|+|-+|-++
T Consensus 17 r~~~~i~~s~~~l~~~lL~G~~l~~~~~~~~~--~~~s~----~~C~~r-~~~-~~l~f~l~~~~ll~K~~ri~~if~~~ 88 (238)
T PF00003_consen 17 RNTPIIRASSPELLYILLLGCLLLYSSVFLFL--LPPSD----ILCTLR-RWL-FSLGFTLIFSALLAKTWRIYRIFRNP 88 (238)
T ss_pred cCCCceecCCHhHHHHHHHHHHHHHHHHHHhc--cCcCC----cEEEEe-eee-eeeehHhhhhHHHHhhhheeeeeccC
Confidence 45677777777655555566555444443322 22222 237754 666 46999999999999999999999865
Q ss_pred cCCC--cch-----hhh-hhHHHHHHHhhhhhhhhccCCc-------------cccc-ceeEeeehhhhHHHHHHHHHHH
Q 020681 120 HLPP--IRS-----YVF-LPLVLMPWLIAATFIQVMRPLN-------------DRCH-MRVHWIIPFLFLHVVYVASLVG 177 (322)
Q Consensus 120 rLPp--irs-----Y~f-LPlillPWi~gaa~ih~~kpl~-------------~rCh-m~~~W~ipv~~LhalYva~Lv~ 177 (322)
+... .++ +.+ +.+++.+-+.-+. -....|.. ..|+ ....|..-.....++....-..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~~ii~~~-w~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~Ll~~~~~ 167 (238)
T PF00003_consen 89 SRKRRRLISSNRSLLLLVLLLVLVQVIILII-WLILDPPTPVSDIDISSNEIYLSCSSNSNIWLILSLGYNGLLLLIGFF 167 (238)
T ss_pred CCCCcccccCCcchhhheeeeeeehhhhhhh-hhhcccccccccccccceEEEEEecCCccchHHHHHHHHHHHHHHHHH
Confidence 5522 232 211 1222222222211 12233332 2895 3344444444444444455556
Q ss_pred HHHhhheeeeechhHHHHHHHHHHHHHHHHHHHHHHH
Q 020681 178 FMAAIRHIEFRFDELRDLWQGIIVSASSIGLWVFAYL 214 (322)
Q Consensus 178 ~t~avrHIeFrFdElkdLwkgilVsa~si~vWv~ayi 214 (322)
.+++.||++-.|+|-|.+=-.+.+......+|+..|.
T Consensus 168 la~~~R~~~~~~nEa~~I~~~~~~~~~~~~~~~~~~~ 204 (238)
T PF00003_consen 168 LAFKTRNVPSNFNEARYIAFAIYNITIIWIIFIPLYF 204 (238)
T ss_pred HHHhhCCCCcccchhhhHhHhHHHHHHHHHHhhhhee
Confidence 7789999999999999876666666666666666554
No 2
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=38.99 E-value=11 Score=28.09 Aligned_cols=13 Identities=62% Similarity=1.257 Sum_probs=10.8
Q ss_pred hhhhcccccchhh
Q 020681 89 GVWIEGPLGFGLL 101 (322)
Q Consensus 89 ~vW~eGPlGFGlL 101 (322)
.-|-+||-|||+-
T Consensus 34 ~E~R~G~~GfGlY 46 (54)
T PF12553_consen 34 PEWREGPAGFGLY 46 (54)
T ss_pred HhheecCCCcccc
Confidence 3589999999974
No 3
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=36.05 E-value=53 Score=26.54 Aligned_cols=64 Identities=25% Similarity=0.418 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHh---hhhhccchhHHHHHHHHHHhhhceeeeEEEeccCCccchhhhhccccCchhhhhhhhhc
Q 020681 198 GIIVSASSIGLWVFAYLL---NEIHDDISWLQVASRFLLLVMGGILVVVFFSISSSEPLLSQISLRKREPKEFETMGQAL 274 (322)
Q Consensus 198 gilVsa~si~vWv~ayil---nei~d~iswlqv~sRflllV~~~iLvl~ffsIsssqpllsqislrkRe~~ef~tMgqAL 274 (322)
|+.....+++.|+..|++ ++-.+.-+|+...+-.+..+.. ...-...|++++..+-+-+||+
T Consensus 3 g~i~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---------------~~~i~~~R~~~~~g~isf~~a~ 67 (163)
T PF13858_consen 3 GLIFGLILILFFLLSYLLGMHDIKYPSNSWLGILSMVITIIFI---------------YFAIRRYRKKYNGGFISFGQAF 67 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccHhHHHHHHHHHHHHHHH---------------HHHHHHHHHHccCCCeeHHHHH
Confidence 566777888888988888 5444445555544422222111 1233345557777888888888
Q ss_pred CC
Q 020681 275 GI 276 (322)
Q Consensus 275 GI 276 (322)
+.
T Consensus 68 ~~ 69 (163)
T PF13858_consen 68 KV 69 (163)
T ss_pred HH
Confidence 74
No 4
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=32.31 E-value=2.3e+02 Score=21.58 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=23.0
Q ss_pred HHHHHHHhhheeeeechhHHHHHHHHHHHHHHH
Q 020681 174 SLVGFMAAIRHIEFRFDELRDLWQGIIVSASSI 206 (322)
Q Consensus 174 ~Lv~~t~avrHIeFrFdElkdLwkgilVsa~si 206 (322)
..+-.-..-||+..+.+-.|++||-++.++.+.
T Consensus 70 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 102 (146)
T PF14667_consen 70 FILNLWYVRKKIGIKINWRRSLIKPILASIVMA 102 (146)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 334455566788888777779999887765543
No 5
>PF08815 Nuc_rec_co-act: Nuclear receptor coactivator; InterPro: IPR014920 This entry represents the interlocking domain of the eukaryotic nuclear receptor coactivators Ncoa1, Ncoa2 and Ncoa3. The interlocking domain forms a 3-helical non-globular array that forms interlocked heterodimers with its target. Nuclear receptors are ligand-activated transcription factors involved in the regulation of many processes, including development, reproduction and homeostasis. Nuclear receptor coactivators act to modulate the function of nuclear receptors. Coactivators associate with promoters and enhancers primarily through protein-protein contacts to facilitate the interaction between DNA-bound transcription factors and the transcription machinery. In addition to their role as coactivators of various nuclear receptors, Ncoa1 and Ncoa3 both have histone acetyltransferase activity (2.3.1.48 from EC), but Ncoa2 does not [, ]. ; GO: 0003713 transcription coactivator activity, 0035257 nuclear hormone receptor binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2C52_B 1KBH_A.
Probab=30.71 E-value=21 Score=27.20 Aligned_cols=27 Identities=37% Similarity=0.615 Sum_probs=19.2
Q ss_pred cchhhhhc--cccCchhhhhhhhhcCCCC
Q 020681 252 PLLSQISL--RKREPKEFETMGQALGIPD 278 (322)
Q Consensus 252 pllsqisl--rkRe~~ef~tMgqALGIpd 278 (322)
-||+|+.- +.-+..+-+..-+|||||+
T Consensus 8 ALldQL~s~L~~~D~~~LeEIDraLGIp~ 36 (51)
T PF08815_consen 8 ALLDQLYSLLSNTDVTGLEEIDRALGIPD 36 (51)
T ss_dssp HHHHHHHHHCCTSSGCCCHCCHHHTTCCC
T ss_pred HHHHHHHHHHhccchhhHHHHHHHhCcHH
Confidence 36777653 3344457888999999987
No 6
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=30.48 E-value=34 Score=33.91 Aligned_cols=101 Identities=21% Similarity=0.361 Sum_probs=59.6
Q ss_pred hccceeeecCCCCCCceeehHhHHHHHHHHHHHHHhh------hchhhhch---hhhhhh-----hH----hhhhhhcc-
Q 020681 34 ILPFVVHKVPRTKSSGFWIPVIQVFASFNLLLSLVLS------DNFLKFQR---RRWWQS-----CY----IWGVWIEG- 94 (322)
Q Consensus 34 ~~p~lvhk~prt~~s~fwipvIQv~aSfnlL~Si~mS------~N~lkf~~---~hwwq~-----Cy----lw~vW~eG- 94 (322)
--|.++..+.-+++.+||+. ++|-|+|+++-=-.+ ..|++-+. ..++.. +- ...-++.+
T Consensus 267 ~~p~i~~~~a~~~~~k~~~E--~iFRS~~~~L~Dn~t~Ey~F~~~FF~~~~~~~~~if~~If~~t~~~~~~~~~~~l~~~ 344 (508)
T PF04129_consen 267 DAPIIVPQIAEDNSQKYPIE--EIFRSLNKALIDNATSEYLFISEFFSGSGDAAEDIFNQIFEPTFSLLQEFTEQLLSNS 344 (508)
T ss_pred cCCccccchhhcccccCCHH--HHHHHHHHHHHHhhhHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35777888888888888765 568999887632211 12222100 011100 00 01112332
Q ss_pred cccchhhhhhhHhhhhhhhhheecccCCCcchhhhhhHHHHHHHh
Q 020681 95 PLGFGLLMSCRIAQAFQLYYIFVRKHLPPIRSYVFLPLVLMPWLI 139 (322)
Q Consensus 95 PlGFGlLlSCrI~QAfqLy~IFVkrrLPpirsY~fLPlillPWi~ 139 (322)
+=.+|+|+..||+|.||. .--+|+.|++..|. =-+..+=|=-
T Consensus 345 ~D~iglll~Irl~~~~~~--~~~~R~ip~ld~y~-~~~~~~LWpr 386 (508)
T PF04129_consen 345 YDAIGLLLCIRLNQRYQF--EMQRRRIPVLDSYL-NSLLMLLWPR 386 (508)
T ss_pred CcHHHHHHHHHHHHHHHH--HHHhCCCCchHHHH-HHHHHHHHHH
Confidence 236899999999999995 44789999999994 3444444543
No 7
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=30.15 E-value=1.4e+02 Score=25.88 Aligned_cols=51 Identities=20% Similarity=0.498 Sum_probs=34.1
Q ss_pred echhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhHHHHHHHHHHhhhcee
Q 020681 188 RFDELRDLWQGIIVSASSIGLWVFAYLLNEIHDD-ISWLQVASRFLLLVMGGIL 240 (322)
Q Consensus 188 rFdElkdLwkgilVsa~si~vWv~ayilnei~d~-iswlqv~sRflllV~~~iL 240 (322)
...+=+..||.+++++++.++|...+.+...-.. +. -+.+-...++.|.+.
T Consensus 139 ~~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~in--p~l~~~~~iiig~i~ 190 (206)
T PF06570_consen 139 KKKKRPSWWKYILISVLAMVLWIVIFVLTSFLPPVIN--PVLPPWVYIIIGVIA 190 (206)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccCC--cCCCHHHHHHHHHHH
Confidence 4555568999999999999999998887776322 21 123444455555443
No 8
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=28.25 E-value=33 Score=31.70 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=15.9
Q ss_pred CcccccccCCCCCCCCChHHH
Q 020681 279 SGLLLRREPTPVIDPNEPLDK 299 (322)
Q Consensus 279 SG~l~~~ep~~~idpNePLdk 299 (322)
.++. .||+|.+|||||++-
T Consensus 133 r~vM--~e~fP~Vs~~~~l~v 151 (187)
T COG3620 133 REVM--GEPFPTVSPDESLNV 151 (187)
T ss_pred HHHh--cCCCCcCCCCCCHHH
Confidence 4555 799999999999984
No 9
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=27.18 E-value=45 Score=26.31 Aligned_cols=21 Identities=43% Similarity=0.838 Sum_probs=15.4
Q ss_pred CCCCCCCCChHHHHhhchhHHHH
Q 020681 287 PTPVIDPNEPLDKLLLNKKFRQS 309 (322)
Q Consensus 287 p~~~idpNePLdkLLlnkrFRqS 309 (322)
|-..|+.|||+|+-| |||..+
T Consensus 2 ~~v~V~ene~~d~AL--rrFKr~ 22 (67)
T COG0828 2 PQVKVRENEPLDKAL--RRFKRK 22 (67)
T ss_pred CeeeecCCChHHHHH--HHHHHH
Confidence 345689999999988 566543
No 10
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=25.25 E-value=25 Score=22.07 Aligned_cols=16 Identities=25% Similarity=0.960 Sum_probs=13.0
Q ss_pred eeeeechhHHHHHHHH
Q 020681 184 HIEFRFDELRDLWQGI 199 (322)
Q Consensus 184 HIeFrFdElkdLwkgi 199 (322)
.+..+...++.||+|+
T Consensus 4 eL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 4 ELNMPYSKLEKLWEGV 19 (20)
T ss_pred EEECCCCChHHhcCcc
Confidence 3567888999999985
No 11
>PLN03232 ABC transporter C family member; Provisional
Probab=25.17 E-value=65 Score=35.94 Aligned_cols=114 Identities=6% Similarity=-0.039 Sum_probs=55.9
Q ss_pred hhHhhhhhhcccccchhhhhhhHhhhhhhhhheecccCC-Cc------chhhhhhHHHHHHHhhhhhhhhccCCcccccc
Q 020681 84 SCYIWGVWIEGPLGFGLLMSCRIAQAFQLYYIFVRKHLP-PI------RSYVFLPLVLMPWLIAATFIQVMRPLNDRCHM 156 (322)
Q Consensus 84 ~Cylw~vW~eGPlGFGlLlSCrI~QAfqLy~IFVkrrLP-pi------rsY~fLPlillPWi~gaa~ih~~kpl~~rChm 156 (322)
-|..=+++.--|.-|++.+. .++++++..+++-+ |+ |....+-+++..|.......+..--+|-+=+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (1495)
T PLN03232 31 PCAIDSLVMIVSHSVLLGLC-----FYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEET 105 (1495)
T ss_pred ccHHhhHHHHHHHHHHHHHH-----HHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 56666676667777765544 45566664333222 22 11122333334444333322211112222222
Q ss_pred eeEeeehhhhH--HHHHHHHHHHHHHhhheeeeechhHHHHHHHHHHHHHHHHHHHHH
Q 020681 157 RVHWIIPFLFL--HVVYVASLVGFMAAIRHIEFRFDELRDLWQGIIVSASSIGLWVFA 212 (322)
Q Consensus 157 ~~~W~ipv~~L--halYva~Lv~~t~avrHIeFrFdElkdLwkgilVsa~si~vWv~a 212 (322)
-.|..++.++ ++++.+++.-.+. +++ ++-|||..-+......|+..
T Consensus 106 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~ 153 (1495)
T PLN03232 106 -DLPPFEVASLMVEAFAWFSMLVLIG-LET--------KQYVKEFRWYVRFGVVYVLV 153 (1495)
T ss_pred -ccccchhHHhHHHHHHHHHHHHHHH-HHH--------HHHHhcCCCCceeeehhHhh
Confidence 2344555544 5666665554444 444 34577777777777777776
No 12
>PF12149 HSV_VP16_C: Herpes simplex virus virion protein 16 C terminal; InterPro: IPR021051 This domain is about 30 amino acids in length. It is found in association with PF02232 from PFAM. This domain is found in the C-terminal region of the HSV virion protein 16 (alpha-TIF). This protein is a transcription promoter. The C-terminal domain is the carboxyl subdomain of the acidic transcriptional activation domain. The protein binds to DNA binding proteins to carry out its function. Such proteins include TATA binding protein, CBP, TBP-binding protein, etc. Alpha-TIF (VP16) from Herpes Simplex virus is an essential tegument protein involved in the transcriptional activation of viral immediate early (IE) promoters (alpha genes) during the lytic phase of viral infection. VP16 associates with cellular transcription factors to enhance transcription rates, including the general transcription factor TFIIB and the transcriptional coactivator PC4. The N-terminal residues of VP16 confer specificity for the IE genes, while the C-terminal residues are responsible for transcriptional activation. Within the C-terminal region are two activation regions that can independently and cooperatively activate transcription []. VP16 forms a transcriptional regulatory complex with two cellular proteins, the POU-domain transcription factor Oct-1 and the cell-proliferation factor HCF-1 []. VP16 is an alpha/beta protein with an unusual fold. Other transcription factors may have a similar topology.; PDB: 2K2U_B 2PHG_B 2PHE_C.
Probab=24.89 E-value=32 Score=23.84 Aligned_cols=18 Identities=50% Similarity=0.687 Sum_probs=13.8
Q ss_pred Cchhhhhh-hhhcCCCCCc
Q 020681 263 EPKEFETM-GQALGIPDSG 280 (322)
Q Consensus 263 e~~ef~tM-gqALGIpdSG 280 (322)
..+||+.| -.||||.|-|
T Consensus 11 adfefeqmftdalgid~fg 29 (30)
T PF12149_consen 11 ADFEFEQMFTDALGIDEFG 29 (30)
T ss_dssp CCCCHHCCCCCCCCTCCC-
T ss_pred hhHHHHHHHhhhhCccccC
Confidence 46899988 5799998865
No 13
>PF08009 CDP-OH_P_tran_2: CDP-alcohol phosphatidyltransferase 2; InterPro: IPR012616 This domain is found on CDP-alcohol phosphatidyltransferases. These enzymes catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.
Probab=24.11 E-value=96 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.9
Q ss_pred EeeehhhhHHHHHHHHHHHHHHhh
Q 020681 159 HWIIPFLFLHVVYVASLVGFMAAI 182 (322)
Q Consensus 159 ~W~ipv~~LhalYva~Lv~~t~av 182 (322)
+|.+|+..+=++|+|.|+...|..
T Consensus 3 ~~vlpl~~~v~l~~a~Lis~PW~t 26 (39)
T PF08009_consen 3 DLVLPLILLVGLYAALLISYPWLT 26 (39)
T ss_pred ceehHHHHHHHHHHHHHHHhhHHH
Confidence 588999999999999999888753
No 14
>PF08228 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR013241 This family of fungal proteins form a subunit of RNase P, the ribonucleoprotein enzyme that cleaves the leader sequence of precursor tRNAs to generate mature tRNAs. The structure of Pop3 has been assigned the L7Ae/L30e fold []. This RNA-binding fold is also present in human RNase P subunit Rpp38, raising the possibility that Pop3p and Rpp38 are functional homologues.
Probab=23.39 E-value=33 Score=30.19 Aligned_cols=18 Identities=44% Similarity=0.794 Sum_probs=15.4
Q ss_pred hhhhhhcCCCCCcccccc
Q 020681 268 ETMGQALGIPDSGLLLRR 285 (322)
Q Consensus 268 ~tMgqALGIpdSG~l~~~ 285 (322)
+++++|||+|+-|+|.=+
T Consensus 114 ~rLs~aLgi~r~g~l~v~ 131 (158)
T PF08228_consen 114 ARLSEALGIPRVGILAVR 131 (158)
T ss_pred HHHHHHhCCCCccEEEEe
Confidence 679999999999999544
No 15
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=22.72 E-value=34 Score=17.92 Aligned_cols=8 Identities=63% Similarity=1.340 Sum_probs=6.3
Q ss_pred cccccchh
Q 020681 93 EGPLGFGL 100 (322)
Q Consensus 93 eGPlGFGl 100 (322)
.||..|||
T Consensus 1 agpy~fgl 8 (8)
T PF08261_consen 1 AGPYSFGL 8 (8)
T ss_pred CCcccccC
Confidence 38998986
No 16
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.21 E-value=20 Score=34.88 Aligned_cols=18 Identities=50% Similarity=0.886 Sum_probs=14.2
Q ss_pred hHHHHHhhhhccccccCC
Q 020681 305 KFRQSFMAFADRRECSFL 322 (322)
Q Consensus 305 rFRqSfmaFADs~~~~~~ 322 (322)
++.+-+=+|+|||||.|+
T Consensus 220 ky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 220 KYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHhcCCcccccHHHHHH
Confidence 355667789999999875
No 17
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=21.34 E-value=91 Score=29.54 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 020681 195 LWQGIIVSASSIGLWVFAYLL 215 (322)
Q Consensus 195 LwkgilVsa~si~vWv~ayil 215 (322)
-||+++|..+|+.+|.+.|+.
T Consensus 161 ~~K~~lv~~~sm~lWi~v~i~ 181 (226)
T COG4858 161 TWKYLLVAVLSMLLWIAVMIA 181 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999988864
No 18
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=21.21 E-value=94 Score=22.73 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 020681 191 ELRDLWQGIIVSASSIGLWVFAY 213 (322)
Q Consensus 191 ElkdLwkgilVsa~si~vWv~ay 213 (322)
..-+||||++=-..++++|.++-
T Consensus 3 ~~V~lWKg~~Kpl~~~~~~~~~~ 25 (44)
T PF09163_consen 3 PSVTLWKGVLKPLGAAGMGATAA 25 (44)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred chHHHHhhhHHHHHHHHHHHHHH
Confidence 34579999998888888887763
No 19
>PF04942 CC: CC domain; InterPro: IPR007026 This short domain contains four conserved cysteines that are probably required for the formation of two disulphide bonds. The domain is only found in proteins from Caenorhabditis species. The domain is named after the characteristic CC motif.
Probab=20.54 E-value=20 Score=24.80 Aligned_cols=13 Identities=38% Similarity=1.035 Sum_probs=10.7
Q ss_pred ccccCCcchhHHH
Q 020681 7 AVKGGCPTDYIAL 19 (322)
Q Consensus 7 a~~GGCpsDYvAv 19 (322)
|..|-||++|+.+
T Consensus 15 ai~G~CP~G~~~i 27 (36)
T PF04942_consen 15 AINGVCPSGYTVI 27 (36)
T ss_pred CcCCcCCCCCEEE
Confidence 5779999999764
No 20
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=20.05 E-value=1.3e+02 Score=30.15 Aligned_cols=25 Identities=40% Similarity=0.729 Sum_probs=21.2
Q ss_pred ceeehHhHHHHHHHHHHHHHhhhchhh
Q 020681 49 GFWIPVIQVFASFNLLLSLVLSDNFLK 75 (322)
Q Consensus 49 ~fwipvIQv~aSfnlL~Si~mS~N~lk 75 (322)
|.|||+|=.+..+ +.+.+-+.|+++
T Consensus 371 gwwiP~ip~ll~l--~~~~i~~~~~~~ 395 (400)
T COG4252 371 GWWIPLIPPLLAL--VGSGIWSTLFLK 395 (400)
T ss_pred hccccchHHHHHH--HHHHHHHHHHHH
Confidence 4599999988887 788888888887
Done!