Query 020681
Match_columns 322
No_of_seqs 10 out of 12
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 06:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ihb_B Regulator of G-protein 95.6 0.00078 2.7E-08 53.3 -2.5 56 258-319 2-57 (153)
2 2bv1_A Regulator of G-protein 92.1 0.017 6E-07 45.0 -1.1 47 274-320 3-49 (145)
3 2af0_A Regulator of G-protein 49.4 8.6 0.0003 29.6 2.2 28 293-320 23-50 (146)
4 1fqi_A RGS9, regulator of G-pr 48.8 9 0.00031 29.7 2.2 27 294-320 22-48 (147)
5 2ihd_A RGS8, regulator of G-pr 46.5 10 0.00035 29.9 2.3 27 294-320 36-62 (155)
6 3c7l_A Regulator of G-protein 43.4 11 0.00039 28.8 2.0 28 292-319 17-44 (137)
7 2crp_A RGS5, regulator of G-pr 37.8 15 0.00051 28.5 1.9 26 294-319 26-51 (150)
8 1zv4_X RGS17, regulator of G-p 37.2 17 0.00057 28.9 2.2 26 294-319 34-59 (158)
9 2k9q_A Uncharacterized protein 35.4 9.5 0.00033 25.7 0.4 47 250-296 28-76 (77)
10 1agr_E RGS4; GI-alpha-1, hydro 30.6 24 0.00083 29.7 2.2 27 294-320 60-86 (205)
11 3fym_A Putative uncharacterize 28.6 13 0.00043 28.7 0.1 36 250-285 29-72 (130)
12 1adr_A P22 C2 repressor; trans 25.1 19 0.00064 23.5 0.5 42 250-291 31-74 (76)
13 4ghj_A Probable transcriptiona 20.5 29 0.00098 26.2 0.7 30 250-279 62-91 (101)
No 1
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=95.57 E-value=0.00078 Score=53.26 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=24.4
Q ss_pred hccccCchhhhhhhhhcCCCCCcccccccCCCCCCCCChHHHHhhchhHHHHHhhhhccccc
Q 020681 258 SLRKREPKEFETMGQALGIPDSGLLLRREPTPVIDPNEPLDKLLLNKKFRQSFMAFADRREC 319 (322)
Q Consensus 258 slrkRe~~ef~tMgqALGIpdSG~l~~~ep~~~idpNePLdkLLlnkrFRqSfmaFADs~~~ 319 (322)
++|||++.|+.| |+ |.|+++-.... .+-.-+..||++|.|+.-|+.|++|.++..|
T Consensus 2 ~~~~~~~~~~~~-~~--~~~~~~~~~~~---~~~~w~~sl~~iL~dp~g~~~F~~FL~~e~~ 57 (153)
T 2ihb_B 2 MSRKRPPSDIHD-SD--GSSSSSHQSLK---STAKWAASLENLLEDPEGVKRFREFLKKEFS 57 (153)
T ss_dssp --------------------------CH---HHHHHHHCHHHHHHSHHHHHHHHHHHHHTTC
T ss_pred ccccCCcccccc-CC--CCccCCCCCHH---HHHHHHHhHHHHHCCHHHHHHHHHHHHHhcC
Confidence 589999999999 76 77666532111 1122345799999999999999999997655
No 2
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Probab=92.14 E-value=0.017 Score=44.99 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=31.6
Q ss_pred cCCCCCcccccccCCCCCCCCChHHHHhhchhHHHHHhhhhcccccc
Q 020681 274 LGIPDSGLLLRREPTPVIDPNEPLDKLLLNKKFRQSFMAFADRRECS 320 (322)
Q Consensus 274 LGIpdSG~l~~~ep~~~idpNePLdkLLlnkrFRqSfmaFADs~~~~ 320 (322)
-||||+|+..+..+-.+-.-+..||++|.|+.-|+.|++|.++..|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~sl~~iL~~p~g~~~F~~FL~~e~s~ 49 (145)
T 2bv1_A 3 SGMKSSKSKDVLSAAEVMQWSQSLEKLLANQTGQNVFGSFLKSEFSE 49 (145)
T ss_dssp --------CEEEEHHHHHHTTTCHHHHHHSHHHHHHHHHHHHHTTCT
T ss_pred cccccCCCCCCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhcCH
Confidence 38999998766555555566789999999999999999999986653
No 3
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*
Probab=49.44 E-value=8.6 Score=29.58 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.3
Q ss_pred CCChHHHHhhchhHHHHHhhhhcccccc
Q 020681 293 PNEPLDKLLLNKKFRQSFMAFADRRECS 320 (322)
Q Consensus 293 pNePLdkLLlnkrFRqSfmaFADs~~~~ 320 (322)
-+..||++|.|+..|+-|++|.++..|.
T Consensus 23 w~~sl~~iL~~p~g~~~F~~Fl~~e~s~ 50 (146)
T 2af0_A 23 WSEAFDELLASKYGLAAFRAFLKSEFCE 50 (146)
T ss_dssp TTTCHHHHHHSHHHHHHHHHHHHHTTCT
T ss_pred HHhHHHHHHCCHHHHHHHHHHHHHhcCH
Confidence 4567999999999999999999987663
No 4
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Probab=48.77 E-value=9 Score=29.71 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.6
Q ss_pred CChHHHHhhchhHHHHHhhhhcccccc
Q 020681 294 NEPLDKLLLNKKFRQSFMAFADRRECS 320 (322)
Q Consensus 294 NePLdkLLlnkrFRqSfmaFADs~~~~ 320 (322)
+..+|++|.|+.-|+.|++|.++..|.
T Consensus 22 ~~sl~~iL~~p~g~~~F~~FL~~e~~~ 48 (147)
T 1fqi_A 22 AFNFSELIRDPKGRQSFQHFLRKEFSG 48 (147)
T ss_dssp TTCHHHHHTSHHHHHHHHHHHHHTTCT
T ss_pred HhHHHHHHCCHHHHHHHHHHHHHhcCH
Confidence 456999999999999999999987663
No 5
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=46.54 E-value=10 Score=29.93 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.6
Q ss_pred CChHHHHhhchhHHHHHhhhhcccccc
Q 020681 294 NEPLDKLLLNKKFRQSFMAFADRRECS 320 (322)
Q Consensus 294 NePLdkLLlnkrFRqSfmaFADs~~~~ 320 (322)
+..||++|.|+.-|+.|++|.++.-|.
T Consensus 36 ~~sl~~iL~dp~g~~~F~~FL~~e~s~ 62 (155)
T 2ihd_A 36 ADSFDVLLSHKYGVAAFRAFLKTEFSE 62 (155)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHHHTTCT
T ss_pred HHhHHHHHCCHHHHHHHHHHHHHhCCH
Confidence 457999999999999999999986653
No 6
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=43.36 E-value=11 Score=28.79 Aligned_cols=28 Identities=29% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCChHHHHhhchhHHHHHhhhhccccc
Q 020681 292 DPNEPLDKLLLNKKFRQSFMAFADRREC 319 (322)
Q Consensus 292 dpNePLdkLLlnkrFRqSfmaFADs~~~ 319 (322)
.-+..||++|.|+..|+-|++|.++.-|
T Consensus 17 ~w~~sl~~iL~~p~g~~~F~~Fl~~e~s 44 (137)
T 3c7l_A 17 GWRESFDLLLNSKNGVAAFHAFLKTEFS 44 (137)
T ss_dssp HHHHCHHHHTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHhHHHHHCChHHHHHHHHHHHHhCC
Confidence 3456799999999999999999998655
No 7
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.80 E-value=15 Score=28.45 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=22.9
Q ss_pred CChHHHHhhchhHHHHHhhhhccccc
Q 020681 294 NEPLDKLLLNKKFRQSFMAFADRREC 319 (322)
Q Consensus 294 NePLdkLLlnkrFRqSfmaFADs~~~ 319 (322)
+..||++|.|+..|+-|++|.++..|
T Consensus 26 ~~sl~~iL~~~~g~~~F~~Fl~~e~s 51 (150)
T 2crp_A 26 RDSLDKLLQNNYGLASFKSFLKSEFS 51 (150)
T ss_dssp HHCHHHHHHSHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHCCHHHHHHHHHHHHHhcC
Confidence 35799999999999999999998655
No 8
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}
Probab=37.22 E-value=17 Score=28.87 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.9
Q ss_pred CChHHHHhhchhHHHHHhhhhccccc
Q 020681 294 NEPLDKLLLNKKFRQSFMAFADRREC 319 (322)
Q Consensus 294 NePLdkLLlnkrFRqSfmaFADs~~~ 319 (322)
+..+|++|.|+..|+-|++|.++.-|
T Consensus 34 ~~sl~~iL~dp~g~~~F~~FL~~e~s 59 (158)
T 1zv4_X 34 SQNFDKMMKAPAGRNLFREFLRTEYS 59 (158)
T ss_dssp TTCHHHHHTSHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHhCCHHHHHHHHHHHHHccC
Confidence 45799999999999999999998655
No 9
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=35.38 E-value=9.5 Score=25.70 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=33.3
Q ss_pred CccchhhhhccccCc--hhhhhhhhhcCCCCCcccccccCCCCCCCCCh
Q 020681 250 SEPLLSQISLRKREP--KEFETMGQALGIPDSGLLLRREPTPVIDPNEP 296 (322)
Q Consensus 250 sqpllsqislrkRe~--~ef~tMgqALGIpdSG~l~~~ep~~~idpNeP 296 (322)
|+.-++++--+++.+ .....++++||++-.-++...++-+.-+|++|
T Consensus 28 s~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~ 76 (77)
T 2k9q_A 28 SRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRIIVNKLEHHHHH 76 (77)
T ss_dssp CHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHHHHHHSSSCCCCCCSC
T ss_pred CHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHhCccccCCCCCCCCC
Confidence 445588888887765 35678999999988877766666655555543
No 10
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A
Probab=30.59 E-value=24 Score=29.69 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.3
Q ss_pred CChHHHHhhchhHHHHHhhhhcccccc
Q 020681 294 NEPLDKLLLNKKFRQSFMAFADRRECS 320 (322)
Q Consensus 294 NePLdkLLlnkrFRqSfmaFADs~~~~ 320 (322)
+..||++|.|+.-|+.|++|.++..|.
T Consensus 60 ~~sle~IL~dp~g~~~F~~FL~~e~s~ 86 (205)
T 1agr_E 60 AESLENLINHECGLAAFKAFLKSEYSE 86 (205)
T ss_dssp TTCHHHHHHSHHHHHHHHHHHHHTTCT
T ss_pred HhhHHHHhcCHHHHHHHHHHHHHcCCH
Confidence 457899999999999999999986653
No 11
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=28.62 E-value=13 Score=28.66 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=27.7
Q ss_pred CccchhhhhccccCchh--------hhhhhhhcCCCCCcccccc
Q 020681 250 SEPLLSQISLRKREPKE--------FETMGQALGIPDSGLLLRR 285 (322)
Q Consensus 250 sqpllsqislrkRe~~e--------f~tMgqALGIpdSG~l~~~ 285 (322)
|+..+|++--+++++.- ...++++||++.+-++...
T Consensus 29 s~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L~v~~~~l~~~~ 72 (130)
T 3fym_A 29 KREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAH 72 (130)
T ss_dssp CHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55678999888877533 6789999999987776543
No 12
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=25.07 E-value=19 Score=23.47 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred CccchhhhhccccCc--hhhhhhhhhcCCCCCcccccccCCCCC
Q 020681 250 SEPLLSQISLRKREP--KEFETMGQALGIPDSGLLLRREPTPVI 291 (322)
Q Consensus 250 sqpllsqislrkRe~--~ef~tMgqALGIpdSG~l~~~ep~~~i 291 (322)
|+.-++++--+++.+ .....++++||++..-++...++...+
T Consensus 31 s~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l~~~~~~~~~~ 74 (76)
T 1adr_A 31 SNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLSQTNV 74 (76)
T ss_dssp CHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHHHTCSCSSTT
T ss_pred CHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhcCCCCCCCC
Confidence 455688887777764 346788999999887777655554443
No 13
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=20.48 E-value=29 Score=26.23 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=25.2
Q ss_pred CccchhhhhccccCchhhhhhhhhcCCCCC
Q 020681 250 SEPLLSQISLRKREPKEFETMGQALGIPDS 279 (322)
Q Consensus 250 sqpllsqislrkRe~~ef~tMgqALGIpdS 279 (322)
|+.-++++--+++.+.-.....+|||+.++
T Consensus 62 s~~~is~~E~G~~~~~~l~~i~~aL~~~~~ 91 (101)
T 4ghj_A 62 ARKTVLNAEKGKVQLDIMIAILMALDLTEQ 91 (101)
T ss_dssp CHHHHHHHHTTCCBHHHHHHHHHHTTCCGG
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHcCCCcc
Confidence 566799999999988888889999999654
Done!