Query 020681
Match_columns 322
No_of_seqs 10 out of 12
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 06:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020681.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020681hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rutx2 g.39.1.3 (X:49-82) LIM 28.9 6.1 0.00044 25.4 0.2 18 2-19 12-32 (34)
2 d1gpma1 c.26.2.1 (A:208-404) G 21.7 10 0.00076 26.3 0.3 30 252-289 168-197 (197)
3 d2c52b1 a.153.1.1 (B:303-353) 19.7 20 0.0015 24.6 1.4 27 252-278 12-40 (51)
4 d1kbha_ a.153.1.1 (A:) Nuclear 17.1 9.8 0.00072 25.8 -0.7 27 252-278 8-36 (47)
5 d1ejga_ g.13.1.1 (A:) Crambin 16.0 14 0.001 24.8 -0.1 13 4-16 30-44 (46)
6 d1x68a1 g.39.1.3 (A:8-36) Four 15.3 10 0.00075 23.6 -0.9 16 71-86 14-29 (29)
7 d1x4la1 g.39.1.3 (A:8-36) Four 14.4 10 0.00075 23.6 -1.1 16 71-86 14-29 (29)
8 d1n8va_ a.118.21.1 (A:) Chemos 13.2 51 0.0037 24.1 2.4 26 294-319 8-34 (101)
9 d1kqfb2 f.23.22.1 (B:246-290) 11.3 71 0.0052 21.0 2.4 20 193-212 5-24 (45)
10 d1ky9a1 b.36.1.4 (A:260-353) P 11.1 45 0.0033 22.4 1.4 27 269-300 16-43 (94)
No 1
>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.91 E-value=6.1 Score=25.41 Aligned_cols=18 Identities=44% Similarity=0.866 Sum_probs=15.2
Q ss_pred CCCCCccccC---CcchhHHH
Q 020681 2 AGSGCAVKGG---CPTDYIAL 19 (322)
Q Consensus 2 ~~s~Ca~~GG---CpsDYvAv 19 (322)
.|++|-++|| |-+||+-+
T Consensus 12 iG~s~ytk~~mILCk~DY~rl 32 (34)
T d1rutx2 12 IGTSSYTKSGMILCRNDYIRL 32 (34)
T ss_dssp HCSEEEEETTEEECHHHHHHH
T ss_pred ccchheecCCEEEEchhHHHh
Confidence 3789999999 99999753
No 2
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=21.72 E-value=10 Score=26.32 Aligned_cols=30 Identities=43% Similarity=0.743 Sum_probs=22.3
Q ss_pred cchhhhhccccCchhhhhhhhhcCCCCCcccccccCCC
Q 020681 252 PLLSQISLRKREPKEFETMGQALGIPDSGLLLRREPTP 289 (322)
Q Consensus 252 pllsqislrkRe~~ef~tMgqALGIpdSG~l~~~ep~~ 289 (322)
||.. +.|. |=..+|+.||+|.+ +..+.|+|
T Consensus 168 PL~~---l~K~---eV~~lA~~lglP~~--i~~~~p~~ 197 (197)
T d1gpma1 168 PLKE---LFKD---EVRKIGLELGLPYD--MLYRHPFP 197 (197)
T ss_dssp TTTT---CCHH---HHHHHHHHTTCCHH--HHTSCCCC
T ss_pred hccC---CcHH---HHHHHHHHcCCCHH--HhCCCCCC
Confidence 5543 4554 56679999999998 77888876
No 3
>d2c52b1 a.153.1.1 (B:303-353) Nuclear receptor coactivator 1, NCOA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.71 E-value=20 Score=24.55 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=20.5
Q ss_pred cchhhhh--ccccCchhhhhhhhhcCCCC
Q 020681 252 PLLSQIS--LRKREPKEFETMGQALGIPD 278 (322)
Q Consensus 252 pllsqis--lrkRe~~ef~tMgqALGIpd 278 (322)
-||+|+- |+..+-.+-+.+-+|||||+
T Consensus 12 ALLdQL~t~L~n~D~~~LeEiDrALGIp~ 40 (51)
T d2c52b1 12 ALLEQLVSFLSGKDETELAELDRALGIDK 40 (51)
T ss_dssp HHHHHHHHHHHTCSGGGTCTTGGGTSSTT
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHhCcHH
Confidence 3667763 45566778889999999997
No 4
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.12 E-value=9.8 Score=25.81 Aligned_cols=27 Identities=37% Similarity=0.712 Sum_probs=19.4
Q ss_pred cchhhhh--ccccCchhhhhhhhhcCCCC
Q 020681 252 PLLSQIS--LRKREPKEFETMGQALGIPD 278 (322)
Q Consensus 252 pllsqis--lrkRe~~ef~tMgqALGIpd 278 (322)
-||+|+- |+.-+-.+-+.+-+|||||+
T Consensus 8 aLldQL~s~L~~~D~~~LeEiDrALGIp~ 36 (47)
T d1kbha_ 8 ALLDQLHTLLSNTDATGLEEIDRALGIPE 36 (47)
T ss_dssp HHHHHHHHHTTSSCCTTHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHhCcHH
Confidence 3566664 44446668888999999986
No 5
>d1ejga_ g.13.1.1 (A:) Crambin {Abyssinian cabbage (Crambe abyssinica) [TaxId: 3721]}
Probab=15.98 E-value=14 Score=24.84 Aligned_cols=13 Identities=54% Similarity=1.416 Sum_probs=9.1
Q ss_pred CCCccccC--Ccchh
Q 020681 4 SGCAVKGG--CPTDY 16 (322)
Q Consensus 4 s~Ca~~GG--CpsDY 16 (322)
|||-..-| ||+||
T Consensus 30 sgCkiisg~~Cp~~y 44 (46)
T d1ejga_ 30 TGCIIIPGATCPGDY 44 (46)
T ss_dssp HSCEECSSSCCCTTS
T ss_pred cCcEEccCCcCCCCC
Confidence 56765333 99998
No 6
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.32 E-value=10 Score=23.58 Aligned_cols=16 Identities=31% Similarity=1.012 Sum_probs=13.5
Q ss_pred hchhhhchhhhhhhhH
Q 020681 71 DNFLKFQRRRWWQSCY 86 (322)
Q Consensus 71 ~N~lkf~~~hwwq~Cy 86 (322)
.-|..|+.|||=+.|+
T Consensus 14 ~k~isFedR~WH~~CF 29 (29)
T d1x68a1 14 AKFICFQDSQWHSECF 29 (29)
T ss_dssp CCEEEETTEEEEGGGC
T ss_pred ceEEEeehhhcccccC
Confidence 4578899999999984
No 7
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.38 E-value=10 Score=23.59 Aligned_cols=16 Identities=25% Similarity=1.151 Sum_probs=13.2
Q ss_pred hchhhhchhhhhhhhH
Q 020681 71 DNFLKFQRRRWWQSCY 86 (322)
Q Consensus 71 ~N~lkf~~~hwwq~Cy 86 (322)
.-|..|+.|+|=+.|+
T Consensus 14 ~kyisFE~R~WH~~CF 29 (29)
T d1x4la1 14 TKYISFEERQWHNDCF 29 (29)
T ss_dssp CSCEECSSCEECTTTC
T ss_pred ceEEEeecccccccCC
Confidence 3577899999999884
No 8
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}
Probab=13.18 E-value=51 Score=24.06 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=19.5
Q ss_pred CChHHHHhhchhHHHHHhh-hhccccc
Q 020681 294 NEPLDKLLLNKKFRQSFMA-FADRREC 319 (322)
Q Consensus 294 NePLdkLLlnkrFRqSfma-FADs~~~ 319 (322)
|=-+|.+|.|+|.+++|+. |-|--.|
T Consensus 8 ~iDvd~IL~n~rll~~y~~Clld~gpC 34 (101)
T d1n8va_ 8 NINLDEILANKRLLVAYVNCVMERGKC 34 (101)
T ss_dssp TSCHHHHHTCHHHHHHHHHHHTTSSCC
T ss_pred ccCHHHHHCCHHHHHHHHhHHccCCCC
Confidence 3348999999999999984 4454445
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=11.28 E-value=71 Score=20.97 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020681 193 RDLWQGIIVSASSIGLWVFA 212 (322)
Q Consensus 193 kdLwkgilVsa~si~vWv~a 212 (322)
-.||||++=-...++.+.++
T Consensus 5 V~lWKgv~Kpl~~~~~~~~~ 24 (45)
T d1kqfb2 5 VSLWKGALKPLAAAGFIATF 24 (45)
T ss_dssp HHHHHTTHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHHH
Confidence 46999998766666666654
No 10
>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}
Probab=11.12 E-value=45 Score=22.43 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=19.3
Q ss_pred hhhhhcCCCC-CcccccccCCCCCCCCChHHHH
Q 020681 269 TMGQALGIPD-SGLLLRREPTPVIDPNEPLDKL 300 (322)
Q Consensus 269 tMgqALGIpd-SG~l~~~ep~~~idpNePLdkL 300 (322)
.+.+++|+|+ .|++ +..++||.|-++-
T Consensus 16 ~~~~~~gl~~~~Gv~-----V~~V~~~spA~~a 43 (94)
T d1ky9a1 16 ELAKAMKVDAQRGAF-----VSQVLPNSSAAKA 43 (94)
T ss_dssp HHHHTSCCTTCCSEE-----CCCCTTCSSSTTT
T ss_pred HHHHHcCCCCCCCcE-----EEECCCChhHHHh
Confidence 4678899876 4777 4557788887654
Done!