Query 020682
Match_columns 322
No_of_seqs 245 out of 1621
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2.6E-35 5.7E-40 290.4 21.8 203 94-308 346-554 (571)
2 KOG4441 Proteins containing BT 100.0 3.7E-35 8.1E-40 289.3 19.8 203 93-307 297-506 (571)
3 PHA02713 hypothetical protein; 100.0 1.1E-34 2.4E-39 286.6 21.7 203 96-308 319-541 (557)
4 PHA02713 hypothetical protein; 100.0 1.8E-33 4E-38 277.9 22.6 203 98-305 273-494 (557)
5 PHA02790 Kelch-like protein; P 100.0 1.1E-31 2.5E-36 261.3 21.8 172 96-293 286-457 (480)
6 PHA03098 kelch-like protein; P 100.0 9E-31 2E-35 258.8 22.4 204 96-308 310-519 (534)
7 TIGR03548 mutarot_permut cycli 100.0 2.8E-30 6E-35 239.8 18.8 199 96-300 87-321 (323)
8 PLN02153 epithiospecifier prot 100.0 1.3E-29 2.8E-34 237.0 23.1 212 95-307 48-291 (341)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 9.6E-30 2.1E-34 238.4 21.6 190 98-292 30-267 (346)
10 PLN02153 epithiospecifier prot 100.0 2.9E-29 6.4E-34 234.7 22.8 185 104-292 4-203 (341)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 8.5E-29 1.8E-33 232.0 20.6 194 96-294 84-333 (346)
12 PLN02193 nitrile-specifier pro 100.0 3E-28 6.5E-33 236.7 23.0 186 95-292 191-387 (470)
13 TIGR03548 mutarot_permut cycli 100.0 3.9E-28 8.4E-33 225.5 22.1 182 98-293 40-234 (323)
14 PLN02193 nitrile-specifier pro 100.0 7.4E-28 1.6E-32 234.0 24.0 191 107-307 151-358 (470)
15 PHA03098 kelch-like protein; P 100.0 4.1E-28 8.9E-33 239.9 20.4 194 99-305 266-469 (534)
16 PRK14131 N-acetylneuraminic ac 100.0 1.6E-27 3.5E-32 225.7 21.5 189 99-292 52-289 (376)
17 PRK14131 N-acetylneuraminic ac 100.0 3.5E-27 7.6E-32 223.4 20.2 193 96-293 105-354 (376)
18 KOG4693 Uncharacterized conser 99.9 3.3E-27 7.2E-32 203.7 14.1 208 98-307 45-283 (392)
19 PHA02790 Kelch-like protein; P 99.9 1.1E-26 2.4E-31 226.3 18.2 189 53-266 289-477 (480)
20 KOG4693 Uncharacterized conser 99.9 1.6E-26 3.6E-31 199.4 14.1 197 92-293 100-313 (392)
21 KOG1230 Protein containing rep 99.9 3.1E-25 6.8E-30 201.3 16.7 197 95-294 41-254 (521)
22 KOG0379 Kelch repeat-containin 99.9 3.2E-24 6.9E-29 208.5 20.0 188 98-294 89-287 (482)
23 KOG1230 Protein containing rep 99.9 3E-23 6.4E-28 188.5 15.9 203 90-292 91-317 (521)
24 KOG0379 Kelch repeat-containin 99.9 1.7E-22 3.6E-27 196.5 18.7 180 113-301 55-244 (482)
25 KOG4152 Host cell transcriptio 99.9 6.8E-21 1.5E-25 177.0 14.9 200 92-301 52-283 (830)
26 KOG4152 Host cell transcriptio 99.8 3.6E-20 7.9E-25 172.2 15.7 189 94-293 105-343 (830)
27 COG3055 Uncharacterized protei 99.7 5.2E-16 1.1E-20 139.7 15.3 193 100-295 63-362 (381)
28 COG3055 Uncharacterized protei 99.6 6.7E-15 1.4E-19 132.6 13.2 182 110-297 28-243 (381)
29 KOG2437 Muskelin [Signal trans 99.5 7.7E-15 1.7E-19 136.8 3.9 188 103-295 235-460 (723)
30 PF13964 Kelch_6: Kelch motif 99.3 5.2E-12 1.1E-16 84.2 6.5 50 168-219 1-50 (50)
31 PF13964 Kelch_6: Kelch motif 99.3 1.4E-11 2.9E-16 82.2 6.6 48 118-165 1-48 (50)
32 PF01344 Kelch_1: Kelch motif; 99.1 1.2E-10 2.5E-15 76.5 4.6 47 118-164 1-47 (47)
33 PF01344 Kelch_1: Kelch motif; 99.1 1.1E-10 2.5E-15 76.5 4.4 47 168-216 1-47 (47)
34 PF13415 Kelch_3: Galactose ox 99.0 9.4E-10 2E-14 72.9 5.6 49 178-227 1-49 (49)
35 PF07646 Kelch_2: Kelch motif; 99.0 1.9E-09 4.1E-14 71.4 6.5 49 168-216 1-49 (49)
36 PF07646 Kelch_2: Kelch motif; 99.0 1.8E-09 4E-14 71.5 6.2 47 118-164 1-49 (49)
37 KOG2437 Muskelin [Signal trans 99.0 3.6E-10 7.9E-15 106.0 3.5 128 154-291 238-394 (723)
38 PF13415 Kelch_3: Galactose ox 99.0 2E-09 4.3E-14 71.3 6.1 48 128-177 1-49 (49)
39 PF13418 Kelch_4: Galactose ox 99.0 7.9E-10 1.7E-14 73.2 4.1 47 118-164 1-48 (49)
40 PF13418 Kelch_4: Galactose ox 98.9 1.5E-09 3.3E-14 71.8 4.4 48 168-217 1-49 (49)
41 smart00612 Kelch Kelch domain. 98.9 5.1E-09 1.1E-13 68.1 5.1 47 180-229 1-47 (47)
42 smart00612 Kelch Kelch domain. 98.7 2E-08 4.3E-13 65.3 4.9 47 130-179 1-47 (47)
43 PLN02772 guanylate kinase 98.7 1.9E-07 4.1E-12 87.6 11.1 87 116-207 22-110 (398)
44 PF13854 Kelch_5: Kelch motif 98.6 1.6E-07 3.4E-12 60.0 5.3 40 115-154 1-41 (42)
45 PLN02772 guanylate kinase 98.5 1E-06 2.2E-11 82.8 10.5 69 168-238 24-96 (398)
46 TIGR01640 F_box_assoc_1 F-box 98.4 4.9E-05 1.1E-09 67.0 19.8 181 98-291 15-216 (230)
47 PF13854 Kelch_5: Kelch motif 98.4 7.3E-07 1.6E-11 56.9 5.3 41 166-207 2-42 (42)
48 PF03089 RAG2: Recombination a 97.8 0.0013 2.8E-08 58.6 14.5 157 132-294 42-231 (337)
49 PF07250 Glyoxal_oxid_N: Glyox 97.7 0.0011 2.3E-08 58.8 13.8 141 147-302 48-199 (243)
50 TIGR01640 F_box_assoc_1 F-box 97.6 0.0034 7.5E-08 55.2 15.7 136 146-291 15-162 (230)
51 PF07250 Glyoxal_oxid_N: Glyox 97.4 0.0028 6.1E-08 56.2 11.9 148 98-271 47-210 (243)
52 PF07893 DUF1668: Protein of u 97.0 0.019 4.2E-07 53.8 13.7 113 98-218 87-220 (342)
53 PF03089 RAG2: Recombination a 97.0 0.07 1.5E-06 47.8 16.1 126 112-240 81-231 (337)
54 PF07893 DUF1668: Protein of u 97.0 0.09 1.9E-06 49.3 17.9 124 175-307 73-214 (342)
55 PF12768 Rax2: Cortical protei 96.4 0.072 1.6E-06 48.4 12.3 120 131-268 1-130 (281)
56 PF13360 PQQ_2: PQQ-like domai 95.6 1.3 2.9E-05 38.3 17.8 161 98-292 4-183 (238)
57 PRK11138 outer membrane biogen 95.1 2.1 4.6E-05 40.7 17.6 117 98-235 80-212 (394)
58 PRK11138 outer membrane biogen 95.0 0.88 1.9E-05 43.3 14.6 137 124-290 65-213 (394)
59 PRK04922 tolB translocation pr 94.2 3 6.4E-05 40.3 16.5 104 98-213 229-332 (433)
60 PRK00178 tolB translocation pr 93.9 4.9 0.00011 38.6 17.3 104 98-213 224-327 (430)
61 PF13360 PQQ_2: PQQ-like domai 93.8 4 8.7E-05 35.2 16.1 159 97-289 46-219 (238)
62 PF12768 Rax2: Cortical protei 93.6 0.69 1.5E-05 42.1 10.0 111 96-214 15-130 (281)
63 PRK04792 tolB translocation pr 92.8 6.4 0.00014 38.3 16.2 104 98-213 243-346 (448)
64 smart00284 OLF Olfactomedin-li 92.8 1.9 4.1E-05 38.6 11.3 141 128-290 34-193 (255)
65 PF08268 FBA_3: F-box associat 92.7 2.1 4.5E-05 33.9 10.5 82 176-266 3-87 (129)
66 PRK03629 tolB translocation pr 92.5 11 0.00023 36.5 17.4 171 98-293 224-395 (429)
67 PF03178 CPSF_A: CPSF A subuni 92.5 2.6 5.7E-05 38.8 12.5 143 129-294 42-195 (321)
68 TIGR03300 assembly_YfgL outer 92.3 6.3 0.00014 37.0 15.0 132 127-290 144-287 (377)
69 KOG2055 WD40 repeat protein [G 92.1 2.2 4.8E-05 40.8 11.2 154 128-309 224-381 (514)
70 TIGR03300 assembly_YfgL outer 91.9 11 0.00024 35.4 18.0 117 146-289 201-327 (377)
71 PF05096 Glu_cyclase_2: Glutam 91.8 1.6 3.4E-05 39.3 9.5 112 170-301 46-158 (264)
72 TIGR02800 propeller_TolB tol-p 91.7 12 0.00027 35.4 17.0 127 98-237 215-341 (417)
73 PLN03215 ascorbic acid mannose 90.1 15 0.00033 34.8 14.8 103 154-270 189-305 (373)
74 PF02191 OLF: Olfactomedin-lik 89.5 4.3 9.3E-05 36.3 10.3 143 128-294 30-192 (250)
75 PF05096 Glu_cyclase_2: Glutam 89.2 4.4 9.6E-05 36.4 10.1 99 123-237 49-148 (264)
76 PF12217 End_beta_propel: Cata 89.2 16 0.00035 32.8 14.0 169 121-292 138-334 (367)
77 PRK04792 tolB translocation pr 89.0 23 0.00051 34.4 17.6 62 145-214 242-303 (448)
78 cd00094 HX Hemopexin-like repe 88.4 15 0.00032 31.3 15.4 96 124-237 12-119 (194)
79 PRK01742 tolB translocation pr 88.2 25 0.00055 33.8 16.2 121 146-294 273-394 (429)
80 PRK02889 tolB translocation pr 88.2 26 0.00055 33.8 16.3 104 98-213 221-324 (427)
81 PF08268 FBA_3: F-box associat 86.1 11 0.00024 29.7 9.8 84 126-213 3-88 (129)
82 TIGR03866 PQQ_ABC_repeats PQQ- 85.9 24 0.00051 31.1 13.9 64 130-211 2-67 (300)
83 PF08450 SGL: SMP-30/Gluconola 85.4 19 0.00041 31.5 12.1 182 98-305 23-218 (246)
84 PRK05137 tolB translocation pr 85.4 36 0.00078 32.8 17.2 105 98-214 227-331 (435)
85 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.7 25 0.00055 35.0 13.7 95 124-234 65-171 (527)
86 PRK05137 tolB translocation pr 84.7 39 0.00085 32.5 17.1 63 145-215 226-288 (435)
87 cd00094 HX Hemopexin-like repe 84.0 25 0.00055 29.8 12.3 89 129-237 63-167 (194)
88 KOG0649 WD40 repeat protein [G 82.9 34 0.00074 30.5 13.7 151 105-290 97-263 (325)
89 PRK00178 tolB translocation pr 81.7 50 0.0011 31.6 17.5 62 145-214 223-284 (430)
90 PRK04922 tolB translocation pr 81.4 53 0.0011 31.6 17.0 62 145-214 228-289 (433)
91 TIGR02800 propeller_TolB tol-p 81.0 51 0.0011 31.2 16.1 63 145-215 214-276 (417)
92 KOG2055 WD40 repeat protein [G 80.1 18 0.00039 34.9 9.9 105 128-252 269-374 (514)
93 PF12217 End_beta_propel: Cata 79.9 46 0.00099 30.0 13.2 162 121-292 77-259 (367)
94 PRK04043 tolB translocation pr 79.5 61 0.0013 31.2 18.0 105 98-214 214-318 (419)
95 PF03178 CPSF_A: CPSF A subuni 79.4 9.8 0.00021 35.0 8.2 119 99-234 64-189 (321)
96 KOG0291 WD40-repeat-containing 79.1 80 0.0017 32.7 14.4 111 165-296 432-555 (893)
97 PF09910 DUF2139: Uncharacteri 78.7 54 0.0012 30.1 14.5 99 144-263 77-185 (339)
98 KOG0310 Conserved WD40 repeat- 77.7 53 0.0011 31.9 12.3 132 126-296 163-304 (487)
99 PF08450 SGL: SMP-30/Gluconola 77.5 33 0.00071 30.0 10.7 85 128-234 11-102 (246)
100 PRK13684 Ycf48-like protein; P 76.3 66 0.0014 29.9 14.2 112 107-237 119-234 (334)
101 PF14870 PSII_BNR: Photosynthe 76.0 65 0.0014 29.7 13.7 174 106-310 5-184 (302)
102 TIGR03866 PQQ_ABC_repeats PQQ- 75.4 56 0.0012 28.6 15.5 63 128-208 42-106 (300)
103 PF10282 Lactonase: Lactonase, 74.9 63 0.0014 30.0 12.3 149 122-294 147-314 (345)
104 PRK04043 tolB translocation pr 68.5 1.2E+02 0.0025 29.3 13.5 111 97-215 257-367 (419)
105 KOG2321 WD40 repeat protein [G 68.2 9.7 0.00021 37.7 5.1 100 92-208 89-208 (703)
106 cd00200 WD40 WD40 domain, foun 68.1 73 0.0016 26.8 14.7 63 129-208 63-126 (289)
107 cd00216 PQQ_DH Dehydrogenases 67.4 1.3E+02 0.0028 29.5 15.6 94 124-233 57-161 (488)
108 TIGR03075 PQQ_enz_alc_DH PQQ-d 67.1 61 0.0013 32.3 10.8 95 174-288 65-171 (527)
109 PRK02889 tolB translocation pr 67.0 1.2E+02 0.0027 29.1 17.4 62 145-214 220-281 (427)
110 KOG0647 mRNA export protein (c 66.6 81 0.0017 29.0 10.2 142 146-312 95-246 (347)
111 PF08662 eIF2A: Eukaryotic tra 64.2 79 0.0017 26.8 9.7 104 128-251 71-178 (194)
112 PTZ00421 coronin; Provisional 62.8 1.6E+02 0.0036 29.0 16.2 63 129-208 138-201 (493)
113 PRK13684 Ycf48-like protein; P 62.8 1.3E+02 0.0028 27.9 16.0 159 106-296 34-196 (334)
114 PF02191 OLF: Olfactomedin-lik 62.4 1.2E+02 0.0025 27.2 12.1 128 97-234 89-236 (250)
115 cd00200 WD40 WD40 domain, foun 62.2 95 0.0021 26.1 14.5 12 197-208 199-210 (289)
116 PLN03215 ascorbic acid mannose 61.0 1.5E+02 0.0033 28.1 13.2 101 106-216 189-305 (373)
117 smart00284 OLF Olfactomedin-li 60.8 1.3E+02 0.0027 27.1 12.0 128 97-234 94-241 (255)
118 KOG0649 WD40 repeat protein [G 58.4 1.4E+02 0.003 26.8 10.2 125 154-301 98-236 (325)
119 COG0823 TolB Periplasmic compo 57.9 1.9E+02 0.004 28.1 13.3 130 146-294 263-393 (425)
120 PRK11028 6-phosphogluconolacto 55.9 1.6E+02 0.0035 26.8 13.9 71 129-215 2-76 (330)
121 COG3823 Glutamine cyclotransfe 51.5 90 0.002 27.3 7.5 109 170-299 47-157 (262)
122 PF10282 Lactonase: Lactonase, 50.8 1.5E+02 0.0033 27.5 9.9 116 128-267 203-332 (345)
123 PF13570 PQQ_3: PQQ-like domai 50.0 32 0.0007 20.7 3.6 26 172-206 15-40 (40)
124 PF08662 eIF2A: Eukaryotic tra 48.9 1.6E+02 0.0036 24.8 11.0 62 178-251 71-132 (194)
125 PRK03629 tolB translocation pr 48.4 2.6E+02 0.0056 26.9 17.8 63 145-215 223-285 (429)
126 PF15525 DUF4652: Domain of un 47.9 1.8E+02 0.0039 24.9 9.7 79 136-218 79-161 (200)
127 PF08114 PMP1_2: ATPase proteo 46.7 23 0.00051 22.0 2.4 21 17-37 11-31 (43)
128 KOG0310 Conserved WD40 repeat- 46.0 2.1E+02 0.0046 27.9 9.9 104 125-251 119-224 (487)
129 TIGR03074 PQQ_membr_DH membran 45.9 3.8E+02 0.0083 28.2 15.4 33 122-161 188-222 (764)
130 cd00216 PQQ_DH Dehydrogenases 45.8 2E+02 0.0044 28.2 10.4 53 173-234 56-116 (488)
131 COG1520 FOG: WD40-like repeat 45.7 2.6E+02 0.0056 26.1 15.0 92 124-234 64-159 (370)
132 PF07734 FBA_1: F-box associat 44.9 1.7E+02 0.0037 23.8 8.9 84 175-266 2-90 (164)
133 KOG1332 Vesicle coat complex C 42.6 2.1E+02 0.0046 25.7 8.6 105 130-268 176-296 (299)
134 PF06433 Me-amine-dh_H: Methyl 41.7 67 0.0014 30.1 5.8 70 128-209 249-324 (342)
135 KOG2048 WD40 repeat protein [G 41.3 4.1E+02 0.0089 27.2 12.1 88 111-213 420-513 (691)
136 PF09910 DUF2139: Uncharacteri 41.2 2.9E+02 0.0064 25.5 11.3 124 98-234 79-219 (339)
137 KOG2321 WD40 repeat protein [G 40.3 1.3E+02 0.0029 30.1 7.7 68 168-251 133-204 (703)
138 TIGR02658 TTQ_MADH_Hv methylam 39.3 3.4E+02 0.0073 25.6 13.0 77 129-210 13-90 (352)
139 KOG0281 Beta-TrCP (transducin 37.9 75 0.0016 29.8 5.4 83 197-295 340-422 (499)
140 KOG0294 WD40 repeat-containing 37.2 3.1E+02 0.0067 25.5 9.0 47 153-208 27-74 (362)
141 PLN00181 protein SPA1-RELATED; 36.6 5.2E+02 0.011 27.1 14.1 87 146-251 556-647 (793)
142 PTZ00420 coronin; Provisional 35.9 4.8E+02 0.01 26.4 15.3 62 129-208 138-200 (568)
143 TIGR02658 TTQ_MADH_Hv methylam 35.6 1.7E+02 0.0038 27.5 7.7 70 127-208 258-333 (352)
144 KOG0278 Serine/threonine kinas 35.5 1.5E+02 0.0031 26.8 6.5 55 128-190 235-290 (334)
145 PF07172 GRP: Glycine rich pro 35.3 32 0.0007 25.8 2.2 9 15-23 3-11 (95)
146 PF13088 BNR_2: BNR repeat-lik 35.0 2.2E+02 0.0047 25.0 8.1 124 103-233 141-275 (275)
147 PF02897 Peptidase_S9_N: Proly 34.2 4E+02 0.0088 25.1 10.9 84 145-236 252-344 (414)
148 PF03597 CcoS: Cytochrome oxid 33.3 62 0.0013 20.7 3.0 22 19-40 6-27 (45)
149 PF07433 DUF1513: Protein of u 33.1 4E+02 0.0086 24.6 11.0 110 116-237 2-120 (305)
150 PF13623 SurA_N_2: SurA N-term 32.9 51 0.0011 26.8 3.2 24 14-39 7-31 (145)
151 PF13859 BNR_3: BNR repeat-lik 32.3 4.1E+02 0.0088 24.5 11.7 164 123-293 3-194 (310)
152 PF13088 BNR_2: BNR repeat-lik 31.5 3.6E+02 0.0077 23.6 10.6 146 128-287 118-275 (275)
153 KOG0316 Conserved WD40 repeat- 31.5 3.8E+02 0.0083 24.0 9.2 83 146-239 82-165 (307)
154 PLN00033 photosystem II stabil 30.2 5E+02 0.011 24.9 16.1 89 106-212 119-214 (398)
155 TIGR00847 ccoS cytochrome oxid 30.0 71 0.0015 21.0 2.9 19 22-40 10-28 (51)
156 PF14781 BBS2_N: Ciliary BBSom 29.7 2.8E+02 0.006 22.3 6.8 39 196-237 72-116 (136)
157 PF14870 PSII_BNR: Photosynthe 28.5 4.7E+02 0.01 24.1 15.2 154 106-289 46-204 (302)
158 PRK11028 6-phosphogluconolacto 28.0 4.6E+02 0.0099 23.7 15.3 93 98-206 13-111 (330)
159 COG1520 FOG: WD40-like repeat 27.6 5.1E+02 0.011 24.1 14.4 118 98-234 79-203 (370)
160 PF05262 Borrelia_P83: Borreli 26.6 4.8E+02 0.01 25.9 9.2 87 140-234 370-456 (489)
161 PF05776 Papilloma_E5A: Papill 26.2 79 0.0017 22.7 2.7 21 18-38 24-44 (91)
162 COG3386 Gluconolactonase [Carb 26.1 5.2E+02 0.011 23.8 16.5 157 147-310 87-253 (307)
163 COG4447 Uncharacterized protei 25.9 5.2E+02 0.011 23.7 8.9 98 121-236 47-146 (339)
164 KOG2048 WD40 repeat protein [G 25.8 7.4E+02 0.016 25.4 11.3 54 145-208 47-101 (691)
165 PRK01029 tolB translocation pr 25.7 6E+02 0.013 24.4 10.7 61 145-213 351-411 (428)
166 PF13859 BNR_3: BNR repeat-lik 25.7 5.3E+02 0.012 23.8 12.9 140 121-271 62-218 (310)
167 COG4257 Vgb Streptogramin lyas 25.3 3E+02 0.0065 25.3 6.8 58 146-213 255-313 (353)
168 PLN00181 protein SPA1-RELATED; 24.1 8.4E+02 0.018 25.5 17.2 99 128-251 587-689 (793)
169 COG3823 Glutamine cyclotransfe 24.0 5E+02 0.011 22.9 8.5 99 122-237 49-149 (262)
170 KOG0266 WD40 repeat-containing 23.1 7E+02 0.015 24.2 12.3 89 146-251 226-317 (456)
171 KOG0289 mRNA splicing factor [ 23.0 7.1E+02 0.015 24.3 13.5 102 146-271 370-474 (506)
172 KOG1036 Mitotic spindle checkp 22.7 6.1E+02 0.013 23.4 11.1 119 94-233 72-203 (323)
173 PF14830 Haemocyan_bet_s: Haem 22.1 74 0.0016 24.3 2.1 28 176-205 34-61 (103)
174 COG3197 FixS Uncharacterized p 22.0 1.2E+02 0.0025 20.6 2.8 18 23-40 11-28 (58)
175 PF03022 MRJP: Major royal jel 21.0 6.3E+02 0.014 22.9 12.5 97 128-232 11-124 (287)
176 KOG0263 Transcription initiati 20.9 5.2E+02 0.011 26.8 8.3 101 174-295 541-643 (707)
177 PLN00033 photosystem II stabil 20.3 7.7E+02 0.017 23.6 15.0 116 106-237 165-300 (398)
178 PF08309 LVIVD: LVIVD repeat; 20.2 1.3E+02 0.0029 18.7 2.7 29 276-304 5-36 (42)
179 PF07433 DUF1513: Protein of u 20.1 7E+02 0.015 23.1 10.0 60 170-236 6-70 (305)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=290.40 Aligned_cols=203 Identities=20% Similarity=0.357 Sum_probs=182.6
Q ss_pred hhhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeE
Q 020682 94 FLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173 (322)
Q Consensus 94 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~ 173 (322)
...++++.||+..++|+.+++|+.+|..+++++++++||++||.++...+ +++++|||.+++|+.+++|+. +|++++
T Consensus 346 ~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l-~svE~YDp~~~~W~~va~m~~--~r~~~g 422 (571)
T KOG4441|consen 346 DRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSL-NSVECYDPVTNKWTPVAPMLT--RRSGHG 422 (571)
T ss_pred cccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccccccc-ccEEEecCCCCcccccCCCCc--ceeeeE
Confidence 34458999999999999999999999999999999999999999976654 569999999999999999998 899999
Q ss_pred EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeee
Q 020682 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAV 253 (322)
Q Consensus 174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v 253 (322)
+++.+++||++||.++... .++++++|||.+++|+.+++|+.+|.++++++++++||++||+++.....++++||
T Consensus 423 v~~~~g~iYi~GG~~~~~~--~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~yd--- 497 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSN--CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYD--- 497 (571)
T ss_pred EEEECCEEEEEcCcCCCcc--ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEc---
Confidence 9999999999999988772 27999999999999999999999999999999999999999998855555566665
Q ss_pred eccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCC------CCCCCCCeeeeeE
Q 020682 254 KDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDF------MAKPGSPIFKCSR 308 (322)
Q Consensus 254 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~------~~~p~~~~~~~~~ 308 (322)
|++++|+.+++|+..+.+.++++++++||++||+++.. .|+|.+..|+...
T Consensus 498 ----p~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 498 ----PETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred ----CCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence 77999999999999999999999999999999998874 5788887775543
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=289.34 Aligned_cols=203 Identities=22% Similarity=0.367 Sum_probs=184.7
Q ss_pred hhhhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCcee
Q 020682 93 RFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL 172 (322)
Q Consensus 93 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~ 172 (322)
......+..||+.+++|..+++||.+|..+++++++++||++||.+......+++|+||+.+++|..+++|+. +|..+
T Consensus 297 ~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~R~~~ 374 (571)
T KOG4441|consen 297 GQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--KRSDF 374 (571)
T ss_pred CcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--ccccc
Confidence 3455589999999999999999999999999999999999999998533455789999999999999999999 89999
Q ss_pred EEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCC-CCCCcceEee
Q 020682 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSI 251 (322)
Q Consensus 173 ~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~-~~~~~~~~~~ 251 (322)
++++++++||++||.++... ++++++|||.+++|+.+++|+.+|+++++++++++||++||.++.. .++++++||
T Consensus 375 ~v~~l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YD- 450 (571)
T KOG4441|consen 375 GVAVLDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYD- 450 (571)
T ss_pred eeEEECCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEc-
Confidence 99999999999999998776 6899999999999999999999999999999999999999998776 777777777
Q ss_pred eeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCC------CCCCCCCCCeeeee
Q 020682 252 AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG------DFMAKPGSPIFKCS 307 (322)
Q Consensus 252 ~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~------~~~~~p~~~~~~~~ 307 (322)
|.+++|+.+++|+..|.++++++++++||++||+++ ...|+|....|.-.
T Consensus 451 ------P~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 451 ------PETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred ------CCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 789999999999999999999999999999999998 34688888776544
No 3
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=286.55 Aligned_cols=203 Identities=14% Similarity=0.221 Sum_probs=175.0
Q ss_pred hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (322)
Q Consensus 96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~ 175 (322)
.++++.||+.+++|..+++||.+|..+++++++++||++||.++.. ..+++++|||.+++|+.+++||. +|.+++++
T Consensus 319 ~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~--~r~~~~~~ 395 (557)
T PHA02713 319 LNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPI--ALSSYGMC 395 (557)
T ss_pred cceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCc--ccccccEE
Confidence 3478999999999999999999999999999999999999986544 34679999999999999999998 78999999
Q ss_pred EeCCEEEEEecccCCCC---------------CCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCC
Q 020682 176 SDGRYIYIVSGQYGPQC---------------RGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN 240 (322)
Q Consensus 176 ~~~~~Iyv~GG~~~~~~---------------~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~ 240 (322)
+++++|||+||.++... ...++++++|||++++|+.+++|+.+|..+++++++|+|||+||.++.
T Consensus 396 ~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~ 475 (557)
T PHA02713 396 VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDE 475 (557)
T ss_pred EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCC
Confidence 99999999999864311 012578999999999999999999999999999999999999998643
Q ss_pred CC-CCCcceEeeeeecccccc-CceEeccCCCCCcCceeEEEECCEEEEEecCCC---CCCCCCCCCeeeeeE
Q 020682 241 RH-TPGLEHWSIAVKDGKALE-KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG---DFMAKPGSPIFKCSR 308 (322)
Q Consensus 241 ~~-~~~~~~~~~~v~~~~~~~-~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~---~~~~~p~~~~~~~~~ 308 (322)
.. .+. ++.|||++ ++|+.+++||..+..+++++++|+||++||+++ ...|||....|+...
T Consensus 476 ~~~~~~-------ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 476 KNVKTC-------IFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred Ccccee-------EEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccccccchh
Confidence 21 122 34455889 899999999999999999999999999999988 678999998776543
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=277.86 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=171.1
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.++.||+.+++|..+++||.+|..+++++++++|||+||.+......+++++||+.+++|..+++|+. +|..+++++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeEEEE
Confidence 57889999999999999999999999999999999999986444445789999999999999999998 8999999999
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCC-CCc----------
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT-PGL---------- 246 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~-~~~---------- 246 (322)
+++||++||.++... ++++++|||.+++|+.+++||.+|..+++++++|+||++||.++.... +..
T Consensus 351 ~g~IYviGG~~~~~~---~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNV---ERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCC---CceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 999999999876543 588999999999999999999999999999999999999998642100 000
Q ss_pred ceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCC-------CCCCCCCC-Ceee
Q 020682 247 EHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG-------DFMAKPGS-PIFK 305 (322)
Q Consensus 247 ~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~-------~~~~~p~~-~~~~ 305 (322)
......++.|||++++|+.+++|+.++..+++++++|+|||+||.++ ...|+|.. ..|+
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 00012355566889999999999999988899999999999999763 13688887 4554
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.1e-31 Score=261.28 Aligned_cols=172 Identities=19% Similarity=0.347 Sum_probs=154.8
Q ss_pred hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (322)
Q Consensus 96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~ 175 (322)
.++++.||+.+++|..+++||.+|..++++.++++||++||.+.. +++++||+.+++|..+++||. +|.+++++
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~--~r~~~~~~ 359 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLK--PRCNPAVA 359 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCC--CCcccEEE
Confidence 347889999999999999999999999999999999999997532 469999999999999999998 78899999
Q ss_pred EeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeec
Q 020682 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD 255 (322)
Q Consensus 176 ~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~ 255 (322)
+.+++|||+||.++. .+.+++|||.+++|+.+++||.+|..+++++++|+||++||. .++|+
T Consensus 360 ~~~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~yd----- 421 (480)
T PHA02790 360 SINNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYC----- 421 (480)
T ss_pred EECCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEec-----
Confidence 999999999997542 367999999999999999999999999999999999999983 34444
Q ss_pred cccccCceEeccCCCCCcCceeEEEECCEEEEEecCCC
Q 020682 256 GKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG 293 (322)
Q Consensus 256 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~ 293 (322)
|++++|+.+++||.++.++++++++|+||++||.++
T Consensus 422 --p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~ 457 (480)
T PHA02790 422 --ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYR 457 (480)
T ss_pred --CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCC
Confidence 679999999999999988999999999999999864
No 6
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=9e-31 Score=258.78 Aligned_cols=204 Identities=17% Similarity=0.301 Sum_probs=171.2
Q ss_pred hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (322)
Q Consensus 96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~ 175 (322)
.++++.||+.+++|..+++||.||.+++++.++++||++||.+... ..+++++||+.+++|+.++++|. +|.+++++
T Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~lp~--~r~~~~~~ 386 (534)
T PHA03098 310 VNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEPPLIF--PRYNPCVV 386 (534)
T ss_pred eccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCCCcCc--CCccceEE
Confidence 3478999999999999999999999999999999999999987433 45679999999999999999988 78999999
Q ss_pred EeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeec
Q 020682 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD 255 (322)
Q Consensus 176 ~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~ 255 (322)
+.+++|||+||...... .++++++||+.+++|+.++++|.+|.+++++..+++||++||.+..... ..++ .++.
T Consensus 387 ~~~~~iYv~GG~~~~~~--~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~-~v~~ 460 (534)
T PHA03098 387 NVNNLIYVIGGISKNDE--LLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNI---KVYN-IVES 460 (534)
T ss_pred EECCEEEEECCcCCCCc--ccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCC---cccc-eEEE
Confidence 99999999999754332 2689999999999999999999999999999999999999998643211 1121 2556
Q ss_pred cccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC------CCCCCCCCeeeeeE
Q 020682 256 GKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD------FMAKPGSPIFKCSR 308 (322)
Q Consensus 256 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~------~~~~p~~~~~~~~~ 308 (322)
|||++++|+.++++|.++.++++++++++|||+||.++. ..|||....|....
T Consensus 461 yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 461 YNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred ecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 668899999999998888888899999999999997743 35677766665443
No 7
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=2.8e-30 Score=239.83 Aligned_cols=199 Identities=13% Similarity=0.224 Sum_probs=156.5
Q ss_pred hhhccccccCCCCE----EECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCce
Q 020682 96 SATFADLPAPDLEW----EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSH 171 (322)
Q Consensus 96 ~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~ 171 (322)
..+++.||+.+++| +.+++||.+|..+++++++++|||+||..... ..+++++||+.+++|++++++|.+ +|..
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~-~r~~ 164 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGE-PRVQ 164 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCC-CCCc
Confidence 34789999988887 78899999999999999999999999975333 357899999999999999988754 6888
Q ss_pred eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCC-----CCCCCcE-EEEECCEEEEEeccCCCCCCCC
Q 020682 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-----SPRYSPA-TQLWRGRLHVMGGSKENRHTPG 245 (322)
Q Consensus 172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p-----~~r~~~~-~~~~~~~Lyv~GG~~~~~~~~~ 245 (322)
+++++.+++|||+||.++.. ..++++||+++++|+.+++|+ ..+..++ +++.+++|||+||.++....+.
T Consensus 165 ~~~~~~~~~iYv~GG~~~~~----~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 240 (323)
T TIGR03548 165 PVCVKLQNELYVFGGGSNIA----YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA 240 (323)
T ss_pred ceEEEECCEEEEEcCCCCcc----ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence 99999999999999986543 367899999999999998753 2333444 3455789999999864321111
Q ss_pred c-------------------------ceEeeeeeccccccCceEeccCCC-CCcCceeEEEECCEEEEEecCCCCCCCCC
Q 020682 246 L-------------------------EHWSIAVKDGKALEKAWRTEIPIP-RGGPHRACFVFNDRLFVVGGQEGDFMAKP 299 (322)
Q Consensus 246 ~-------------------------~~~~~~v~~~~~~~~~W~~~~~~p-~~~~~~~~~~~~~~lyv~GG~~~~~~~~p 299 (322)
+ ..|.-+++.|||.+++|+.++++| ..+.++++++++++||++||.....+..|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg~rt~ 320 (323)
T TIGR03548 241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKPGVRTP 320 (323)
T ss_pred HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccccCCcCCc
Confidence 1 112234666678899999999887 47777889999999999999877666555
Q ss_pred C
Q 020682 300 G 300 (322)
Q Consensus 300 ~ 300 (322)
.
T Consensus 321 ~ 321 (323)
T TIGR03548 321 D 321 (323)
T ss_pred C
Confidence 3
No 8
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=1.3e-29 Score=237.02 Aligned_cols=212 Identities=16% Similarity=0.226 Sum_probs=161.2
Q ss_pred hhhhccccccCCCCEEECCCCC-CCCc---ccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC---CC
Q 020682 95 LSATFADLPAPDLEWEQMPSAP-VPRL---DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DM 167 (322)
Q Consensus 95 ~~~~~~~yd~~~~~W~~~~~~p-~~r~---~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---p~ 167 (322)
..++++.||+.+++|+.+++++ .||. ++++++++++||||||.+... ..+++++||+++++|+.+++++. |.
T Consensus 48 ~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~ 126 (341)
T PLN02153 48 IDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPE 126 (341)
T ss_pred eeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCC
Confidence 4458999999999999998764 4543 688899999999999986554 34689999999999999887722 44
Q ss_pred CCceeEEEEeCCEEEEEecccCCCC---CCCCceEEEEeCCCCcEEEcCCCC---CCCCCcEEEEECCEEEEEeccCCCC
Q 020682 168 AHSHLGVVSDGRYIYIVSGQYGPQC---RGPTSRTFVLDSETRKWDSIPPLP---SPRYSPATQLWRGRLHVMGGSKENR 241 (322)
Q Consensus 168 ~r~~~~~~~~~~~Iyv~GG~~~~~~---~~~~~~v~~yd~~t~~W~~~~~~p---~~r~~~~~~~~~~~Lyv~GG~~~~~ 241 (322)
+|..|++++.+++|||+||...... ...++++++||+++++|+++++++ .+|.+|++++++++|||+||.....
T Consensus 127 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 206 (341)
T PLN02153 127 ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSI 206 (341)
T ss_pred CceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccccc
Confidence 8999999999999999999864321 112578999999999999998654 7899999999999999999975321
Q ss_pred CCCCcc-eEeeeeeccccccCceEeccC---CCCCcCceeEEEECCEEEEEecCC---------------CCCCCCCCCC
Q 020682 242 HTPGLE-HWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQE---------------GDFMAKPGSP 302 (322)
Q Consensus 242 ~~~~~~-~~~~~v~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~lyv~GG~~---------------~~~~~~p~~~ 302 (322)
...... ....+++.||+++++|+++.+ +|..+..+++++++++||||||.. ....|+|...
T Consensus 207 ~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 207 LPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred ccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 000000 001124445577999999864 677788889999999999999963 1235677776
Q ss_pred eeeee
Q 020682 303 IFKCS 307 (322)
Q Consensus 303 ~~~~~ 307 (322)
.|+..
T Consensus 287 ~W~~~ 291 (341)
T PLN02153 287 VWEKL 291 (341)
T ss_pred EEEec
Confidence 66544
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=9.6e-30 Score=238.36 Aligned_cols=190 Identities=19% Similarity=0.236 Sum_probs=147.8
Q ss_pred hcccccc--CCCCEEECCCCC-CCCcccEEEEECCEEEEEeecCCCC-----CCcceeEEEECCCCceEECCCCCCCCCC
Q 020682 98 TFADLPA--PDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMPKDMAH 169 (322)
Q Consensus 98 ~~~~yd~--~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~~~~p~~r 169 (322)
.++.||. .+++|..+++|| .+|..+++++++++|||+||..... ..++++|+||+.+++|++++. +.|.+|
T Consensus 30 ~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~ 108 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGL 108 (346)
T ss_pred eeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcc
Confidence 5677774 678999999999 5899999999999999999985422 245689999999999999874 233367
Q ss_pred ceeEEE-EeCCEEEEEecccCCCC-------------------------------CCCCceEEEEeCCCCcEEEcCCCCC
Q 020682 170 SHLGVV-SDGRYIYIVSGQYGPQC-------------------------------RGPTSRTFVLDSETRKWDSIPPLPS 217 (322)
Q Consensus 170 ~~~~~~-~~~~~Iyv~GG~~~~~~-------------------------------~~~~~~v~~yd~~t~~W~~~~~~p~ 217 (322)
.+++++ +.+++||++||.+.... ...++++++||+.+++|+.+++||.
T Consensus 109 ~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~ 188 (346)
T TIGR03547 109 LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPF 188 (346)
T ss_pred cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCC
Confidence 777766 78999999999753210 0013789999999999999999996
Q ss_pred -CCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCc-------CceeEEEECCEEEEEe
Q 020682 218 -PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG-------PHRACFVFNDRLFVVG 289 (322)
Q Consensus 218 -~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~-------~~~~~~~~~~~lyv~G 289 (322)
+|..++++.++++|||+||..... ....+.| +|++++++++|+.+++||..+ .++++++++++|||+|
T Consensus 189 ~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~---~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~G 264 (346)
T TIGR03547 189 LGTAGSAIVHKGNKLLLINGEIKPG-LRTAEVK---QYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAG 264 (346)
T ss_pred CcCCCceEEEECCEEEEEeeeeCCC-ccchheE---EEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEee
Confidence 689999999999999999985432 1222222 345567889999999987543 3445788999999999
Q ss_pred cCC
Q 020682 290 GQE 292 (322)
Q Consensus 290 G~~ 292 (322)
|.+
T Consensus 265 G~~ 267 (346)
T TIGR03547 265 GAN 267 (346)
T ss_pred cCC
Confidence 975
No 10
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=2.9e-29 Score=234.65 Aligned_cols=185 Identities=16% Similarity=0.246 Sum_probs=146.7
Q ss_pred cCCCCEEECCC----CCCCCcccEEEEECCEEEEEeecCCC-CCCcceeEEEECCCCceEECCCCCC-CC-CCceeEEEE
Q 020682 104 APDLEWEQMPS----APVPRLDGAAIQIKNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMPK-DM-AHSHLGVVS 176 (322)
Q Consensus 104 ~~~~~W~~~~~----~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~-p~-~r~~~~~~~ 176 (322)
+.+.+|..+.+ +|.||..|+++.++++|||+||.... ....+++++||+.+++|+.++++.. |. .+.++++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35678999976 79999999999999999999998543 3345789999999999999887643 32 234788899
Q ss_pred eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC-----CCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEee
Q 020682 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-----PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (322)
Q Consensus 177 ~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~ 251 (322)
++++|||+||.+.... ++++++||+++++|+++++| |.+|..|++++.+++|||+||............+ .
T Consensus 84 ~~~~iyv~GG~~~~~~---~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~ 159 (341)
T PLN02153 84 VGTKLYIFGGRDEKRE---FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF-R 159 (341)
T ss_pred ECCEEEEECCCCCCCc---cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc-c
Confidence 9999999999876543 68999999999999999877 7899999999999999999998643222111111 1
Q ss_pred eeeccccccCceEeccCC---CCCcCceeEEEECCEEEEEecCC
Q 020682 252 AVKDGKALEKAWRTEIPI---PRGGPHRACFVFNDRLFVVGGQE 292 (322)
Q Consensus 252 ~v~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~lyv~GG~~ 292 (322)
+++.|||++++|+.++++ |..+.++++++++++|||+||.+
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 203 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFA 203 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccc
Confidence 244455779999998765 36677778899999999999864
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=8.5e-29 Score=231.96 Aligned_cols=194 Identities=19% Similarity=0.358 Sum_probs=148.1
Q ss_pred hhhccccccCCCCEEECC-CCCCCCcccEEE-EECCEEEEEeecCCCC--------------------------------
Q 020682 96 SATFADLPAPDLEWEQMP-SAPVPRLDGAAI-QIKNLFYVFAGYGSLD-------------------------------- 141 (322)
Q Consensus 96 ~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~~~~lyv~GG~~~~~-------------------------------- 141 (322)
..+++.||+.+++|+.++ ++|.+|.+++++ .++++|||+||.+...
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred cccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 347999999999999997 456667777766 6899999999985320
Q ss_pred -CCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEe--CCCCcEEEcCCCCCC
Q 020682 142 -YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD--SETRKWDSIPPLPSP 218 (322)
Q Consensus 142 -~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd--~~t~~W~~~~~~p~~ 218 (322)
...+++++||+.+++|+.+++||.+ +|.++++++++++|||+||....... ..+++.|| +++++|+++++||.+
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~~~~p~~-~r~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~y~~~~~~~~W~~~~~m~~~ 240 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNLGENPFL-GTAGSAIVHKGNKLLLINGEIKPGLR--TAEVKQYLFTGGKLEWNKLPPLPPP 240 (346)
T ss_pred cCccceEEEEECCCCceeECccCCCC-cCCCceEEEECCEEEEEeeeeCCCcc--chheEEEEecCCCceeeecCCCCCC
Confidence 0136799999999999999999853 58889999999999999998644321 34565555 577899999999876
Q ss_pred CC-------CcEEEEECCEEEEEeccCCCCCC------------CCcceEeeeeeccccccCceEeccCCCCCcCceeEE
Q 020682 219 RY-------SPATQLWRGRLHVMGGSKENRHT------------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF 279 (322)
Q Consensus 219 r~-------~~~~~~~~~~Lyv~GG~~~~~~~------------~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~ 279 (322)
|. .|.+++++++|||+||.+..... ........++|+ +++++|+.+.+||..+.+++++
T Consensus 241 r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd--~~~~~W~~~~~lp~~~~~~~~~ 318 (346)
T TIGR03547 241 KSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA--LDNGKWSKVGKLPQGLAYGVSV 318 (346)
T ss_pred CCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE--ecCCcccccCCCCCCceeeEEE
Confidence 53 45577899999999998531100 000112333443 5599999999999988888888
Q ss_pred EECCEEEEEecCCCC
Q 020682 280 VFNDRLFVVGGQEGD 294 (322)
Q Consensus 280 ~~~~~lyv~GG~~~~ 294 (322)
+++++|||+||.+..
T Consensus 319 ~~~~~iyv~GG~~~~ 333 (346)
T TIGR03547 319 SWNNGVLLIGGENSG 333 (346)
T ss_pred EcCCEEEEEeccCCC
Confidence 999999999998754
No 12
>PLN02193 nitrile-specifier protein
Probab=99.96 E-value=3e-28 Score=236.70 Aligned_cols=186 Identities=15% Similarity=0.244 Sum_probs=154.3
Q ss_pred hhhhccccccCCCCEEECCCC---CCC-CcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC-CCCC
Q 020682 95 LSATFADLPAPDLEWEQMPSA---PVP-RLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAH 169 (322)
Q Consensus 95 ~~~~~~~yd~~~~~W~~~~~~---p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-p~~r 169 (322)
+.++++.||+.+++|+.++++ |.+ |..++++.++++||||||.+... .++++|+||+.+++|++++++.. |.+|
T Consensus 191 ~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R 269 (470)
T PLN02193 191 IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPR 269 (470)
T ss_pred eeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCc
Confidence 445799999999999988653 332 46888899999999999987554 45789999999999999988732 4489
Q ss_pred ceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC---CCCCCCCcEEEEECCEEEEEeccCCCCCCCCc
Q 020682 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGL 246 (322)
Q Consensus 170 ~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~ 246 (322)
..|++++.+++|||+||.+.... ++++++||+.+++|+.+++ +|.+|..|++++++++||++||.++.. .+++
T Consensus 270 ~~h~~~~~~~~iYv~GG~~~~~~---~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~~dv 345 (470)
T PLN02193 270 SFHSMAADEENVYVFGGVSATAR---LKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-VDDV 345 (470)
T ss_pred cceEEEEECCEEEEECCCCCCCC---cceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-cCce
Confidence 99999999999999999876544 6899999999999999874 677899999999999999999986532 3455
Q ss_pred ceEeeeeeccccccCceEeccCC---CCCcCceeEEEECCEEEEEecCC
Q 020682 247 EHWSIAVKDGKALEKAWRTEIPI---PRGGPHRACFVFNDRLFVVGGQE 292 (322)
Q Consensus 247 ~~~~~~v~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~lyv~GG~~ 292 (322)
++|| +.+++|+++.++ |..|..+++++++++|||+||..
T Consensus 346 ~~yD-------~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 346 HYYD-------PVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred EEEE-------CCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 5555 669999998654 77777789999999999999975
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.96 E-value=3.9e-28 Score=225.47 Aligned_cols=182 Identities=18% Similarity=0.279 Sum_probs=144.6
Q ss_pred hccccc-cC-CCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCce----EECCCCCCCCCCce
Q 020682 98 TFADLP-AP-DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW----VDRFDMPKDMAHSH 171 (322)
Q Consensus 98 ~~~~yd-~~-~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~p~~r~~ 171 (322)
+++.|+ +. +.+|..+++||.||..+++++++++||++||.+... ..+++++||+.+++| +.++++|. +|..
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~--~~~~ 116 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPF--TFEN 116 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCc--CccC
Confidence 555553 32 237999999999999888899999999999986544 356899999999998 67888887 7888
Q ss_pred eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCC-CCCCcEEEEECCEEEEEeccCCCCCCCCcceEe
Q 020682 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (322)
Q Consensus 172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~ 250 (322)
+++++.+++|||+||...... .+++++||+.+++|++++++|. +|..+.+++++++|||+||.+... ..++
T Consensus 117 ~~~~~~~~~iYv~GG~~~~~~---~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~---- 188 (323)
T TIGR03548 117 GSACYKDGTLYVGGGNRNGKP---SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDG---- 188 (323)
T ss_pred ceEEEECCEEEEEeCcCCCcc---CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccce----
Confidence 999999999999999754332 6899999999999999999884 799999999999999999986432 2223
Q ss_pred eeeeccccccCceEeccCC-----CCCcCce-eEEEECCEEEEEecCCC
Q 020682 251 IAVKDGKALEKAWRTEIPI-----PRGGPHR-ACFVFNDRLFVVGGQEG 293 (322)
Q Consensus 251 ~~v~~~~~~~~~W~~~~~~-----p~~~~~~-~~~~~~~~lyv~GG~~~ 293 (322)
+.|||++++|+.++++ |+.+..+ ++++.+++|||+||.++
T Consensus 189 ---~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 189 ---YKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNK 234 (323)
T ss_pred ---EEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCH
Confidence 3445779999998765 4443333 34555799999999863
No 14
>PLN02193 nitrile-specifier protein
Probab=99.96 E-value=7.4e-28 Score=233.96 Aligned_cols=191 Identities=18% Similarity=0.291 Sum_probs=155.5
Q ss_pred CCEEECCC---CCCCCcccEEEEECCEEEEEeecCCC-CCCcceeEEEECCCCceEECCCCC-CCC-CCceeEEEEeCCE
Q 020682 107 LEWEQMPS---APVPRLDGAAIQIKNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMP-KDM-AHSHLGVVSDGRY 180 (322)
Q Consensus 107 ~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~~~-~p~-~r~~~~~~~~~~~ 180 (322)
++|.++.+ +|.||..|+++.++++|||+||.... ....+++|+||+++++|+.++.+. .|. +|.++++++++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~ 230 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST 230 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence 79999876 58899999999999999999998543 334467999999999999876542 222 3568899999999
Q ss_pred EEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC---CCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccc
Q 020682 181 IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL---PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK 257 (322)
Q Consensus 181 Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~ 257 (322)
|||+||.+.... ++++++||+.+++|++++++ |.+|..|++++.+++|||+||.+.....++++.|+
T Consensus 231 lYvfGG~~~~~~---~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd------- 300 (470)
T PLN02193 231 LYVFGGRDASRQ---YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYN------- 300 (470)
T ss_pred EEEECCCCCCCC---CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEE-------
Confidence 999999876543 68999999999999999887 88999999999999999999997655555555555
Q ss_pred cccCceEeccC---CCCCcCceeEEEECCEEEEEecCCCC-----CCCCCCCCeeeee
Q 020682 258 ALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGD-----FMAKPGSPIFKCS 307 (322)
Q Consensus 258 ~~~~~W~~~~~---~p~~~~~~~~~~~~~~lyv~GG~~~~-----~~~~p~~~~~~~~ 307 (322)
+.+++|+.+++ +|..+.++++++++++||++||.++. ..|+|....|+..
T Consensus 301 ~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~ 358 (470)
T PLN02193 301 IVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV 358 (470)
T ss_pred CCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEe
Confidence 66999998764 56667777889999999999997643 4577777666544
No 15
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=4.1e-28 Score=239.85 Aligned_cols=194 Identities=19% Similarity=0.306 Sum_probs=161.6
Q ss_pred ccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeC
Q 020682 99 FADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG 178 (322)
Q Consensus 99 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~ 178 (322)
+..|+....+|..++++|. +..+++++++++||++||.+......+++++||+.+++|..+++++. +|.++++++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~R~~~~~~~~~ 342 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY--PRKNPGVTVFN 342 (534)
T ss_pred eeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc--ccccceEEEEC
Confidence 4467888889988876664 34568889999999999997766566789999999999999999987 78999999999
Q ss_pred CEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCC-CCCCCcceEeeeeeccc
Q 020682 179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN-RHTPGLEHWSIAVKDGK 257 (322)
Q Consensus 179 ~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~-~~~~~~~~~~~~v~~~~ 257 (322)
++||++||.++... .+++++||+.+++|+.++++|.+|..++++.++|+||++||.... ...+++++||
T Consensus 343 ~~lyv~GG~~~~~~---~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd------- 412 (534)
T PHA03098 343 NRIYVIGGIYNSIS---LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS------- 412 (534)
T ss_pred CEEEEEeCCCCCEe---cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe-------
Confidence 99999999874433 689999999999999999999999999999999999999997432 2234455554
Q ss_pred cccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC---------CCCCCCCCeee
Q 020682 258 ALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD---------FMAKPGSPIFK 305 (322)
Q Consensus 258 ~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~---------~~~~p~~~~~~ 305 (322)
|.+++|+.++++|.++.++++++++++|||+||.+.. ..|+|....|.
T Consensus 413 ~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 413 LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 6799999999999999888999999999999997542 34677665544
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=1.6e-27 Score=225.66 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=145.1
Q ss_pred ccccccC--CCCEEECCCCC-CCCcccEEEEECCEEEEEeecCC-C----CCCcceeEEEECCCCceEECCCCCCCCCCc
Q 020682 99 FADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGS-L----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170 (322)
Q Consensus 99 ~~~yd~~--~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~-~----~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~ 170 (322)
++.||.. +++|..++++| .+|..++++.++++|||+||... . ....+++|+||+.+++|+.++++ .|.++.
T Consensus 52 ~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~ 130 (376)
T PRK14131 52 WYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLA 130 (376)
T ss_pred EEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCccc
Confidence 5666664 57899999998 58999999999999999999864 1 12357899999999999999853 233667
Q ss_pred eeEEEE-eCCEEEEEecccCCCC-------------------------------CCCCceEEEEeCCCCcEEEcCCCCC-
Q 020682 171 HLGVVS-DGRYIYIVSGQYGPQC-------------------------------RGPTSRTFVLDSETRKWDSIPPLPS- 217 (322)
Q Consensus 171 ~~~~~~-~~~~Iyv~GG~~~~~~-------------------------------~~~~~~v~~yd~~t~~W~~~~~~p~- 217 (322)
+|++++ .+++||++||.+.... ....+++++||+.+++|+.++++|.
T Consensus 131 ~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~ 210 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL 210 (376)
T ss_pred ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCC
Confidence 777776 8999999999753100 0014789999999999999999996
Q ss_pred CCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcC--------ceeEEEECCEEEEEe
Q 020682 218 PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP--------HRACFVFNDRLFVVG 289 (322)
Q Consensus 218 ~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~--------~~~~~~~~~~lyv~G 289 (322)
+|..++++.++++|||+||..... ....+.|+ ++++|++++|+.+++||..+. ++.+++++++|||+|
T Consensus 211 ~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~---~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~G 286 (376)
T PRK14131 211 GTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQ---GKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAG 286 (376)
T ss_pred CCCcceEEEECCEEEEEeeeECCC-cCChhheE---EEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEee
Confidence 788899999999999999975322 22333342 345678999999998876542 233578899999999
Q ss_pred cCC
Q 020682 290 GQE 292 (322)
Q Consensus 290 G~~ 292 (322)
|.+
T Consensus 287 G~~ 289 (376)
T PRK14131 287 GAN 289 (376)
T ss_pred ccC
Confidence 975
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=3.5e-27 Score=223.39 Aligned_cols=193 Identities=19% Similarity=0.341 Sum_probs=147.4
Q ss_pred hhhccccccCCCCEEECCC-CCCCCcccEEEE-ECCEEEEEeecCCCC--------------------------------
Q 020682 96 SATFADLPAPDLEWEQMPS-APVPRLDGAAIQ-IKNLFYVFAGYGSLD-------------------------------- 141 (322)
Q Consensus 96 ~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~lyv~GG~~~~~-------------------------------- 141 (322)
..+++.||+.+++|+.+++ +|.+|.+|+++. .+++|||+||.+...
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 4589999999999999986 466677777776 799999999975310
Q ss_pred -CCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceE--EEEeCCCCcEEEcCCCCCC
Q 020682 142 -YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT--FVLDSETRKWDSIPPLPSP 218 (322)
Q Consensus 142 -~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v--~~yd~~t~~W~~~~~~p~~ 218 (322)
...+++++||+.+++|+.++++|.+ +|.++++++.+++|||+||....... ..++ +.||+++++|+.+++||.+
T Consensus 185 ~~~~~~v~~YD~~t~~W~~~~~~p~~-~~~~~a~v~~~~~iYv~GG~~~~~~~--~~~~~~~~~~~~~~~W~~~~~~p~~ 261 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWKNAGESPFL-GTAGSAVVIKGNKLWLINGEIKPGLR--TDAVKQGKFTGNNLKWQKLPDLPPA 261 (376)
T ss_pred cCcCceEEEEECCCCeeeECCcCCCC-CCCcceEEEECCEEEEEeeeECCCcC--ChhheEEEecCCCcceeecCCCCCC
Confidence 1236799999999999999988853 68888999999999999997654322 2444 4568899999999999887
Q ss_pred CCC--------cEEEEECCEEEEEeccCCCCC----------C--CCcceEeeeeeccccccCceEeccCCCCCcCceeE
Q 020682 219 RYS--------PATQLWRGRLHVMGGSKENRH----------T--PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC 278 (322)
Q Consensus 219 r~~--------~~~~~~~~~Lyv~GG~~~~~~----------~--~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~ 278 (322)
|.. +.+++.+++|||+||.+.... . .....+..++ |||++++|+.+++||..+.++++
T Consensus 262 ~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--yd~~~~~W~~~~~lp~~r~~~~a 339 (376)
T PRK14131 262 PGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEI--YALVNGKWQKVGELPQGLAYGVS 339 (376)
T ss_pred CcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehhe--EEecCCcccccCcCCCCccceEE
Confidence 642 225678999999999753210 0 0011233333 33669999999999999988889
Q ss_pred EEECCEEEEEecCCC
Q 020682 279 FVFNDRLFVVGGQEG 293 (322)
Q Consensus 279 ~~~~~~lyv~GG~~~ 293 (322)
++++++|||+||...
T Consensus 340 v~~~~~iyv~GG~~~ 354 (376)
T PRK14131 340 VSWNNGVLLIGGETA 354 (376)
T ss_pred EEeCCEEEEEcCCCC
Confidence 999999999999764
No 18
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.95 E-value=3.3e-27 Score=203.65 Aligned_cols=208 Identities=19% Similarity=0.322 Sum_probs=170.5
Q ss_pred hccccccCCCCEEECCC-------------CCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCC-C
Q 020682 98 TFADLPAPDLEWEQMPS-------------APVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-M 163 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~-------------~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~ 163 (322)
++..+|..+..|+++++ .|-.|.+|+++.+++++||-||.+......+.++.||++++.|.+..- -
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G 124 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG 124 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceee
Confidence 68889999999999976 244589999999999999999998877777889999999999987432 1
Q ss_pred CCCCCCceeEEEEeCCEEEEEecccCCC-CCCCCceEEEEeCCCCcEEEcC---CCCCCCCCcEEEEECCEEEEEeccCC
Q 020682 164 PKDMAHSHLGVVSDGRYIYIVSGQYGPQ-CRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKE 239 (322)
Q Consensus 164 ~~p~~r~~~~~~~~~~~Iyv~GG~~~~~-~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~Lyv~GG~~~ 239 (322)
-.|.+|-+|++|+.++.+|||||+.... ++ .++++.+|..|.+|+.+. ..|.-|..|+++++++.+|||||...
T Consensus 125 ~vPgaRDGHsAcV~gn~MyiFGGye~~a~~F--S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D 202 (392)
T KOG4693|consen 125 FVPGARDGHSACVWGNQMYIFGGYEEDAQRF--SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSD 202 (392)
T ss_pred ecCCccCCceeeEECcEEEEecChHHHHHhh--hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccc
Confidence 1244899999999999999999986533 33 689999999999999995 45667999999999999999999854
Q ss_pred C--CCCCCcceEeeeeeccccccCceEeccC---CCCCcCceeEEEECCEEEEEecCCCC--------CCCCCCCCeeee
Q 020682 240 N--RHTPGLEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGD--------FMAKPGSPIFKC 306 (322)
Q Consensus 240 ~--~~~~~~~~~~~~v~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~lyv~GG~~~~--------~~~~p~~~~~~~ 306 (322)
. .+..--+.|+-++..+|..++.|...++ .|.+|-+|+..+++++||+|||+++. ..|+|.+.+|.-
T Consensus 203 ~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~ 282 (392)
T KOG4693|consen 203 ESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSV 282 (392)
T ss_pred cCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchhee
Confidence 2 3444456676666667778999998654 67888888999999999999998874 457888877754
Q ss_pred e
Q 020682 307 S 307 (322)
Q Consensus 307 ~ 307 (322)
.
T Consensus 283 I 283 (392)
T KOG4693|consen 283 I 283 (392)
T ss_pred e
Confidence 3
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=1.1e-26 Score=226.28 Aligned_cols=189 Identities=17% Similarity=0.227 Sum_probs=146.9
Q ss_pred cccccccCCceeecCCCccchhhhhhhhhhhhhccCCchhhhhhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEE
Q 020682 53 ASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFY 132 (322)
Q Consensus 53 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ly 132 (322)
...|++.++.+..+|.+...+.........+.+--..+... ..+++.||+.+++|+.+++||.+|..+++++++++||
T Consensus 289 v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~--~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY 366 (480)
T PHA02790 289 AIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN--PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY 366 (480)
T ss_pred EEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC--CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE
Confidence 34567777778888776332222111111222211111111 1468999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEc
Q 020682 133 VFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI 212 (322)
Q Consensus 133 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~ 212 (322)
|+||.+... +.+++|||++++|+.+++|+. +|..+++++++++|||+||. +++||+++++|+.+
T Consensus 367 viGG~~~~~---~~ve~ydp~~~~W~~~~~m~~--~r~~~~~~~~~~~IYv~GG~-----------~e~ydp~~~~W~~~ 430 (480)
T PHA02790 367 VIGGHSETD---TTTEYLLPNHDQWQFGPSTYY--PHYKSCALVFGRRLFLVGRN-----------AEFYCESSNTWTLI 430 (480)
T ss_pred EecCcCCCC---ccEEEEeCCCCEEEeCCCCCC--ccccceEEEECCEEEEECCc-----------eEEecCCCCcEeEc
Confidence 999985432 569999999999999999998 78889999999999999982 57899999999999
Q ss_pred CCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEec
Q 020682 213 PPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE 266 (322)
Q Consensus 213 ~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~ 266 (322)
++||.+|..+++++++|+||++||.++....+++++|| |++++|+..
T Consensus 431 ~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd-------~~~~~W~~~ 477 (480)
T PHA02790 431 DDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN-------NRTYSWNIW 477 (480)
T ss_pred CCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEE-------CCCCeEEec
Confidence 99999999999999999999999987544445556665 779999764
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=199.35 Aligned_cols=197 Identities=17% Similarity=0.267 Sum_probs=156.6
Q ss_pred hhhhhhhccccccCCCCEEEC---CCCCCCCcccEEEEECCEEEEEeecCC-CCCCcceeEEEECCCCceEECCCCCCC-
Q 020682 92 ERFLSATFADLPAPDLEWEQM---PSAPVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDNKWVDRFDMPKD- 166 (322)
Q Consensus 92 ~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~~~~p- 166 (322)
.+...+.++.||+++++|.+. .-+|..|.+|++|++++.+|||||+.+ ...+.++++++|+.+-+|+.+.....|
T Consensus 100 ~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp 179 (392)
T KOG4693|consen 100 DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP 179 (392)
T ss_pred cccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc
Confidence 355666899999999999876 457899999999999999999999954 456778999999999999998766554
Q ss_pred CCCceeEEEEeCCEEEEEecccCCCCC------CCCceEEEEeCCCCcEEEcCC---CCCCCCCcEEEEECCEEEEEecc
Q 020682 167 MAHSHLGVVSDGRYIYIVSGQYGPQCR------GPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGS 237 (322)
Q Consensus 167 ~~r~~~~~~~~~~~Iyv~GG~~~~~~~------~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~Lyv~GG~ 237 (322)
.=|-.|+++++++.+|||||....... .--+.+..+|.+|..|.+.++ .|..|..|++.+++++||+|||+
T Consensus 180 rwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGY 259 (392)
T KOG4693|consen 180 RWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGY 259 (392)
T ss_pred hhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEeccc
Confidence 237889999999999999998543211 013678899999999999864 57789999999999999999999
Q ss_pred CCCCCCCCcceEeeeeeccccccCceEeccC---CCCCcCceeEEEECCEEEEEecCCC
Q 020682 238 KENRHTPGLEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEG 293 (322)
Q Consensus 238 ~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~lyv~GG~~~ 293 (322)
++. +.+.-.++|.|||.+..|..+.+ -|.+|-..++++.++|+|+|||..-
T Consensus 260 ng~-----ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 260 NGT-----LNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred chh-----hhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 874 22222345556699999998733 3433333489999999999999653
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=3.1e-25 Score=201.28 Aligned_cols=197 Identities=19% Similarity=0.269 Sum_probs=152.4
Q ss_pred hhhhccccccCCCCEE--ECCCCCCCCcccEEEEE--CCEEEEEeecCC---CCCCcceeEEEECCCCceEECCCCCCCC
Q 020682 95 LSATFADLPAPDLEWE--QMPSAPVPRLDGAAIQI--KNLFYVFAGYGS---LDYVHSHVDVYNFTDNKWVDRFDMPKDM 167 (322)
Q Consensus 95 ~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~~~~p~ 167 (322)
+...+..++..+.+=. ...+.|.||.++.+.+. .+.|++|||.-- ...+++++|.||+++++|+++.....|.
T Consensus 41 i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~ 120 (521)
T KOG1230|consen 41 IAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPP 120 (521)
T ss_pred HHHHHHhhhhhccceeeeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcC
Confidence 3334556655554222 22456899999988865 678999999832 3457789999999999999998887777
Q ss_pred CCceeEEEEeC-CEEEEEecccCC---CCCCCCceEEEEeCCCCcEEEcC--CCCCCCCCcEEEEECCEEEEEeccCCCC
Q 020682 168 AHSHLGVVSDG-RYIYIVSGQYGP---QCRGPTSRTFVLDSETRKWDSIP--PLPSPRYSPATQLWRGRLHVMGGSKENR 241 (322)
Q Consensus 168 ~r~~~~~~~~~-~~Iyv~GG~~~~---~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~Lyv~GG~~~~~ 241 (322)
+|+.|.++++- +.+|+|||.... ..+.+..++|+||..+++|+++. .-|.+|++|.|+++..+|++|||+...
T Consensus 121 pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~- 199 (521)
T KOG1230|consen 121 PRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS- 199 (521)
T ss_pred CCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC-
Confidence 99999999884 899999998532 23455799999999999999994 578999999999999999999999763
Q ss_pred CCCCcceEeeeeeccccccCceEeccC---CCCCcCceeEEEE-CCEEEEEecCCCC
Q 020682 242 HTPGLEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVF-NDRLFVVGGQEGD 294 (322)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~W~~~~~---~p~~~~~~~~~~~-~~~lyv~GG~~~~ 294 (322)
+..++|-.+||.||..+-+|+++.+ -|.+|+++.+.+. +|.|||.|||...
T Consensus 200 --nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~ 254 (521)
T KOG1230|consen 200 --NRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQ 254 (521)
T ss_pred --CCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHh
Confidence 2234444455555556999999744 4677777788887 9999999997644
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.92 E-value=3.2e-24 Score=208.50 Aligned_cols=188 Identities=18% Similarity=0.297 Sum_probs=163.7
Q ss_pred hccccccCCCCEEECC---CCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC-CCCCceeE
Q 020682 98 TFADLPAPDLEWEQMP---SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLG 173 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-p~~r~~~~ 173 (322)
+++.+|..+..|.... ..|.+|.+|.++.++++||+|||.+......++++.||+.+.+|..+..... |.+|.+|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 5999999999998764 4678999999999999999999998644446789999999999999876655 66899999
Q ss_pred EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC---CCCCCCCCcEEEEECCEEEEEeccC-CCCCCCCcceE
Q 020682 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSK-ENRHTPGLEHW 249 (322)
Q Consensus 174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~Lyv~GG~~-~~~~~~~~~~~ 249 (322)
++++++++|||||.+..... .+++++||+++.+|.++. +.|.||++|++++++++++|+||.. +..++++++.+
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~--~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~l 246 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDS--LNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHIL 246 (482)
T ss_pred EEEECCEEEEECCccCcccc--eeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEee
Confidence 99999999999999876632 799999999999999994 6788999999999999999999987 66788888888
Q ss_pred eeeeeccccccCceEecc---CCCCCcCceeEEEECCEEEEEecCCCC
Q 020682 250 SIAVKDGKALEKAWRTEI---PIPRGGPHRACFVFNDRLFVVGGQEGD 294 (322)
Q Consensus 250 ~~~v~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~lyv~GG~~~~ 294 (322)
|+. +.+|..+. ..|.+|..|..++.+++++++||....
T Consensus 247 dl~-------~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 247 DLS-------TWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDP 287 (482)
T ss_pred ecc-------cceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccc
Confidence 865 89998653 478888888999999999999997764
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=3e-23 Score=188.51 Aligned_cols=203 Identities=19% Similarity=0.316 Sum_probs=153.0
Q ss_pred chhhhhhhhccccccCCCCEEEC--CCCCCCCcccEEEEEC-CEEEEEeecCCC---C--CCcceeEEEECCCCceEECC
Q 020682 90 DAERFLSATFADLPAPDLEWEQM--PSAPVPRLDGAAIQIK-NLFYVFAGYGSL---D--YVHSHVDVYNFTDNKWVDRF 161 (322)
Q Consensus 90 ~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r~~~~~~~~~-~~lyv~GG~~~~---~--~~~~~v~~yd~~~~~W~~~~ 161 (322)
..+..+-++++.||...++|+++ +..|.||+.|.++++. +.+|+|||.-.. . .-+.|+|.||..+++|+++.
T Consensus 91 gqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 91 GQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred ceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 34556667999999999999998 4568999999998874 899999998321 1 23468999999999999998
Q ss_pred CCCCCCCCceeEEEEeCCEEEEEecccCCCC-CCCCceEEEEeCCCCcEEEcCC---CCCCCCCcEEEEE-CCEEEEEec
Q 020682 162 DMPKDMAHSHLGVVSDGRYIYIVSGQYGPQC-RGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLW-RGRLHVMGG 236 (322)
Q Consensus 162 ~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~-~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~-~~~Lyv~GG 236 (322)
....|.+|++|-+++..++|++|||...... ..-++++++||+.|-+|+++.+ .|.+|++|.+.+. +|.|||+||
T Consensus 171 ~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 171 FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 7777779999999999999999999865432 2226999999999999999953 4889999999988 999999999
Q ss_pred cCCCCCCCC-------cceEeeeeeccccccCceEeccC---CCCCcCceeEEEE-CCEEEEEecCC
Q 020682 237 SKENRHTPG-------LEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVF-NDRLFVVGGQE 292 (322)
Q Consensus 237 ~~~~~~~~~-------~~~~~~~v~~~~~~~~~W~~~~~---~p~~~~~~~~~~~-~~~lyv~GG~~ 292 (322)
+.......+ .+.|.+.-.+.+..+-+|+.+.| -|.+|.++++++. +++.|.|||.-
T Consensus 251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~ 317 (521)
T KOG1230|consen 251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC 317 (521)
T ss_pred hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee
Confidence 964321111 12333331111111367888754 3555555577766 55999999943
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=196.50 Aligned_cols=180 Identities=23% Similarity=0.385 Sum_probs=146.1
Q ss_pred CCCCCCCcccEEEEECCEEEEEeecCCCCCCcc-eeEEEECCCCceEECCCC-CCCCCCceeEEEEeCCEEEEEecccCC
Q 020682 113 PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGP 190 (322)
Q Consensus 113 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~Iyv~GG~~~~ 190 (322)
...|.+|..|+++.+++++|||||........+ ++|++|.++..|.....- ..|.+|.+|.++..+++||+|||.+..
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 346889999999999999999999865544333 699999999999875432 335589999999999999999999862
Q ss_pred CCCCCCceEEEEeCCCCcEEEcC---CCCCCCCCcEEEEECCEEEEEeccCCCC-CCCCcceEeeeeeccccccCceEec
Q 020682 191 QCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTE 266 (322)
Q Consensus 191 ~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~Lyv~GG~~~~~-~~~~~~~~~~~v~~~~~~~~~W~~~ 266 (322)
. ..+++++.||+.|.+|..+. ..|.+|.+|++++.+++||||||.+... ..++++.|| +++.+|.++
T Consensus 135 ~--~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d-------~~~~~W~~~ 205 (482)
T KOG0379|consen 135 Y--RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYD-------LETSTWSEL 205 (482)
T ss_pred C--CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeec-------cccccceec
Confidence 2 22789999999999999985 4688999999999999999999987654 444444444 569999986
Q ss_pred ---cCCCCCcCceeEEEECCEEEEEecCC-CCCCCCCCC
Q 020682 267 ---IPIPRGGPHRACFVFNDRLFVVGGQE-GDFMAKPGS 301 (322)
Q Consensus 267 ---~~~p~~~~~~~~~~~~~~lyv~GG~~-~~~~~~p~~ 301 (322)
.+.|.+|.+|+++++++++++|||.+ +..++++..
T Consensus 206 ~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~ 244 (482)
T KOG0379|consen 206 DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVH 244 (482)
T ss_pred ccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceE
Confidence 45677888889999999999999998 555554443
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=6.8e-21 Score=177.05 Aligned_cols=200 Identities=16% Similarity=0.212 Sum_probs=159.0
Q ss_pred hhhhhhhccccccCCCCEEEC---CCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCC-----
Q 020682 92 ERFLSATFADLPAPDLEWEQM---PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM----- 163 (322)
Q Consensus 92 ~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~----- 163 (322)
.+.+.+.+..||..+++|... .+.|.+-..|..+..|.+||+|||+-+.+.+.+++|..-....+|+++.+-
T Consensus 52 NEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG 131 (830)
T KOG4152|consen 52 NEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNG 131 (830)
T ss_pred cccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCC
Confidence 344556899999999999875 467888888898999999999999999998888888777778888887543
Q ss_pred CCCCCCceeEEEEeCCEEEEEecccCCCC------CCCCceEEEEeCCCC----cEEEc---CCCCCCCCCcEEEEE---
Q 020682 164 PKDMAHSHLGVVSDGRYIYIVSGQYGPQC------RGPTSRTFVLDSETR----KWDSI---PPLPSPRYSPATQLW--- 227 (322)
Q Consensus 164 ~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~------~~~~~~v~~yd~~t~----~W~~~---~~~p~~r~~~~~~~~--- 227 (322)
+.|.+|-+|+....++|-|+|||..+... ..-++|++.+++.-+ .|... ..+|.+|..|.++++
T Consensus 132 ~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eK 211 (830)
T KOG4152|consen 132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEK 211 (830)
T ss_pred CCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEec
Confidence 23668999999999999999999743221 112789999888744 38876 478999999999988
Q ss_pred ---CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEe-----ccCCCCCcCceeEEEECCEEEEEecCCCCCCCCC
Q 020682 228 ---RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT-----EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKP 299 (322)
Q Consensus 228 ---~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~-----~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~p 299 (322)
..++||+||..+-+ +.+++..|++ +..|.+ +.||||..+ ++.+++||+|||||+.-..+-+-
T Consensus 212 Ds~~skmvvyGGM~G~R-LgDLW~Ldl~-------Tl~W~kp~~~G~~PlPRSLH--sa~~IGnKMyvfGGWVPl~~~~~ 281 (830)
T KOG4152|consen 212 DSKKSKMVVYGGMSGCR-LGDLWTLDLD-------TLTWNKPSLSGVAPLPRSLH--SATTIGNKMYVFGGWVPLVMDDV 281 (830)
T ss_pred cCCcceEEEEccccccc-ccceeEEecc-------eeecccccccCCCCCCcccc--cceeecceeEEecceeeeecccc
Confidence 34799999998754 6677777765 999987 467888776 88999999999999876655544
Q ss_pred CC
Q 020682 300 GS 301 (322)
Q Consensus 300 ~~ 301 (322)
..
T Consensus 282 ~~ 283 (830)
T KOG4152|consen 282 KV 283 (830)
T ss_pred cc
Confidence 43
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=3.6e-20 Score=172.23 Aligned_cols=189 Identities=21% Similarity=0.349 Sum_probs=149.5
Q ss_pred hhhhhccccccCCCCEEECCC-------CCCCCcccEEEEECCEEEEEeecCC--------CCCCcceeEEEECCCC---
Q 020682 94 FLSATFADLPAPDLEWEQMPS-------APVPRLDGAAIQIKNLFYVFAGYGS--------LDYVHSHVDVYNFTDN--- 155 (322)
Q Consensus 94 ~~~~~~~~yd~~~~~W~~~~~-------~p~~r~~~~~~~~~~~lyv~GG~~~--------~~~~~~~v~~yd~~~~--- 155 (322)
..+++++.+...+-+|+++.+ +|.||.+|+...+++|-|+|||..+ -..+++|+|+.+..-.
T Consensus 105 kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgv 184 (830)
T KOG4152|consen 105 KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGV 184 (830)
T ss_pred cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCce
Confidence 345567777777778988843 5789999999999999999999722 2246789999888733
Q ss_pred -ceEECC-CCCCCCCCceeEEEEe------CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC---CCCCCCCCcEE
Q 020682 156 -KWVDRF-DMPKDMAHSHLGVVSD------GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPAT 224 (322)
Q Consensus 156 -~W~~~~-~~~~p~~r~~~~~~~~------~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~ 224 (322)
.|...- .-+.|.+|..|.++++ ..++||+||..+-. +.|+|.+|++|-+|.+.. ..|.||+-|++
T Consensus 185 v~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa 260 (830)
T KOG4152|consen 185 VAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSA 260 (830)
T ss_pred EEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeecccccccCCCCCCcccccc
Confidence 387632 2333558999999987 35899999998755 799999999999999874 45778999999
Q ss_pred EEECCEEEEEeccCC-----C---------CCCCCcceEeeeeeccccccCceEec-------cCCCCCcCceeEEEECC
Q 020682 225 QLWRGRLHVMGGSKE-----N---------RHTPGLEHWSIAVKDGKALEKAWRTE-------IPIPRGGPHRACFVFND 283 (322)
Q Consensus 225 ~~~~~~Lyv~GG~~~-----~---------~~~~~~~~~~~~v~~~~~~~~~W~~~-------~~~p~~~~~~~~~~~~~ 283 (322)
++++|++|||||.-- . ...+++-+|+++ +..|+.+ ..+||+|.+|+++.++.
T Consensus 261 ~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld-------t~~W~tl~~d~~ed~tiPR~RAGHCAvAigt 333 (830)
T KOG4152|consen 261 TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD-------TMAWETLLMDTLEDNTIPRARAGHCAVAIGT 333 (830)
T ss_pred eeecceeEEecceeeeeccccccccccceeeeccceeeeeec-------chheeeeeeccccccccccccccceeEEecc
Confidence 999999999999621 1 124556677765 9999985 23899999999999999
Q ss_pred EEEEEecCCC
Q 020682 284 RLFVVGGQEG 293 (322)
Q Consensus 284 ~lyv~GG~~~ 293 (322)
+|||..|.+|
T Consensus 334 RlYiWSGRDG 343 (830)
T KOG4152|consen 334 RLYIWSGRDG 343 (830)
T ss_pred EEEEEeccch
Confidence 9999999876
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.69 E-value=5.2e-16 Score=139.73 Aligned_cols=193 Identities=20% Similarity=0.319 Sum_probs=144.5
Q ss_pred cccccCCCCEEECCCCC-CCCcccEEEEECCEEEEEeecCCCC----CCcceeEEEECCCCceEECCCCCCCCCCceeEE
Q 020682 100 ADLPAPDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD----YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (322)
Q Consensus 100 ~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~----~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~ 174 (322)
...+.....|++++.+| .+|.+...++++++||||||..... ...+++|+|||.+|+|+++.... |..-.++.+
T Consensus 63 ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~ 141 (381)
T COG3055 63 LDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGAST 141 (381)
T ss_pred hhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-cccccccee
Confidence 34455567999999998 5688888899999999999985433 35689999999999999986553 335677888
Q ss_pred EEeCC-EEEEEecccCCC-------------------------------CCCCCceEEEEeCCCCcEEEcCCCCC-CCCC
Q 020682 175 VSDGR-YIYIVSGQYGPQ-------------------------------CRGPTSRTFVLDSETRKWDSIPPLPS-PRYS 221 (322)
Q Consensus 175 ~~~~~-~Iyv~GG~~~~~-------------------------------~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~ 221 (322)
+.+++ +||++||.+... .......+..|||++++|+.+...|- ++++
T Consensus 142 ~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG 221 (381)
T COG3055 142 FSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG 221 (381)
T ss_pred EecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccC
Confidence 88876 999999963211 01124678999999999999986554 5666
Q ss_pred cEEEEECCEEEEEeccCCC--C----------------------------------------------------------
Q 020682 222 PATQLWRGRLHVMGGSKEN--R---------------------------------------------------------- 241 (322)
Q Consensus 222 ~~~~~~~~~Lyv~GG~~~~--~---------------------------------------------------------- 241 (322)
.+.+.-+|+|.++-|.-.. +
T Consensus 222 sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~ 301 (381)
T COG3055 222 SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALK 301 (381)
T ss_pred cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHH
Confidence 6655566667777664110 0
Q ss_pred ---------CCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCC
Q 020682 242 ---------HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDF 295 (322)
Q Consensus 242 ---------~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~ 295 (322)
+..-...|+-+||.+| ++.|+.+..+|++......+..++++|++||.+...
T Consensus 302 ~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 302 AYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGG 362 (381)
T ss_pred HHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCC
Confidence 0001234566889988 999999999999888878889999999999988654
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.62 E-value=6.7e-15 Score=132.62 Aligned_cols=182 Identities=19% Similarity=0.286 Sum_probs=141.1
Q ss_pred EECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECC--CCceEECCCCCCCCCCceeEEEEeCCEEEEEecc
Q 020682 110 EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187 (322)
Q Consensus 110 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~ 187 (322)
.++|++|.+-.+.+-+.+++.+||--|..+. +.+..|.+ .+.|+.++..|.+ +|.+..+++.+++||||||.
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~ 101 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGY 101 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeecc
Confidence 3568899998888888999999998774333 35666665 4689999999986 79999999999999999998
Q ss_pred cCCCC--CCCCceEEEEeCCCCcEEEcC-CCCCCCCCcEEEEECC-EEEEEeccCCCCC---------------------
Q 020682 188 YGPQC--RGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWRG-RLHVMGGSKENRH--------------------- 242 (322)
Q Consensus 188 ~~~~~--~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~-~Lyv~GG~~~~~~--------------------- 242 (322)
..... .+.++++++|||.+++|+++. ..|....++.++..++ +||++||++....
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 54433 334799999999999999996 4567788888999888 8999999854211
Q ss_pred ------CCCcceEeeeeeccccccCceEeccCCCC-CcCceeEEEECCEEEEEecCCCCCCC
Q 020682 243 ------TPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMA 297 (322)
Q Consensus 243 ------~~~~~~~~~~v~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~lyv~GG~~~~~~~ 297 (322)
...-+.|+-++..|+|++++|+.+...|- +.++.+++.-+|++.++-|+-.....
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLR 243 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLR 243 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCcc
Confidence 22334677788999999999999887664 34444555667889999996655443
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.51 E-value=7.7e-15 Score=136.76 Aligned_cols=188 Identities=18% Similarity=0.233 Sum_probs=137.5
Q ss_pred ccCCCCEEECCCC----------CCCCcccEEEEEC--CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC-CCCCC
Q 020682 103 PAPDLEWEQMPSA----------PVPRLDGAAIQIK--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAH 169 (322)
Q Consensus 103 d~~~~~W~~~~~~----------p~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~p~~r 169 (322)
.+....|.++++. |..|.+|.++... +.||+.||+++...+ .|+|.|+...+.|..+.... .|..|
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l-~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDL-ADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhH-HHHHhhcCCcceeEEeecCCCCCcch
Confidence 3445689887542 5678999999775 499999999998876 56999999999999876543 45589
Q ss_pred ceeEEEEeC--CEEEEEecccCCCC---CCCCceEEEEeCCCCcEEEcC------CCCCCCCCcEEEEECCE--EEEEec
Q 020682 170 SHLGVVSDG--RYIYIVSGQYGPQC---RGPTSRTFVLDSETRKWDSIP------PLPSPRYSPATQLWRGR--LHVMGG 236 (322)
Q Consensus 170 ~~~~~~~~~--~~Iyv~GG~~~~~~---~~~~~~v~~yd~~t~~W~~~~------~~p~~r~~~~~~~~~~~--Lyv~GG 236 (322)
++|-+++.- .|+|++|-+-+... ...-+++|.||..++.|.-+. ..|...+.|.|++.+++ |||+||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 999999984 49999997754332 122489999999999999884 35677899999999998 999999
Q ss_pred cCCCCCCCCcceEeeeeeccccccCceEeccC------------CCCCcCceeEEEECCEEEEEecCCCCC
Q 020682 237 SKENRHTPGLEHWSIAVKDGKALEKAWRTEIP------------IPRGGPHRACFVFNDRLFVVGGQEGDF 295 (322)
Q Consensus 237 ~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~------------~p~~~~~~~~~~~~~~lyv~GG~~~~~ 295 (322)
..-... ...|. -+|.|+.+...|..+.. ..|-+..+-.+.-++++|++||+....
T Consensus 394 r~~~~~---e~~f~-GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~ 460 (723)
T KOG2437|consen 394 RILTCN---EPQFS-GLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT 460 (723)
T ss_pred eeccCC---Ccccc-ceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce
Confidence 854321 12222 14445566888886422 122233334566788999999977653
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.32 E-value=5.2e-12 Score=84.21 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=44.9
Q ss_pred CCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCC
Q 020682 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR 219 (322)
Q Consensus 168 ~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r 219 (322)
+|.++++++.+++|||+||..... ..++++++||++|++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~--~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSG--KYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCC--CccccEEEEcCCCCcEEECCCCCCCC
Confidence 588999999999999999998742 23799999999999999999999987
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.27 E-value=1.4e-11 Score=82.18 Aligned_cols=48 Identities=29% Similarity=0.556 Sum_probs=44.3
Q ss_pred CCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC
Q 020682 118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK 165 (322)
Q Consensus 118 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 165 (322)
||.+++++.++++|||+||........+++++||+++++|+++++||.
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 689999999999999999998766667889999999999999999998
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.10 E-value=1.2e-10 Score=76.49 Aligned_cols=47 Identities=34% Similarity=0.592 Sum_probs=42.8
Q ss_pred CCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC
Q 020682 118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (322)
Q Consensus 118 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 164 (322)
||.++++++++++|||+||.+......+++++||+++++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999999999999886777889999999999999998875
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.09 E-value=1.1e-10 Score=76.51 Aligned_cols=47 Identities=36% Similarity=0.695 Sum_probs=41.3
Q ss_pred CCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCC
Q 020682 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (322)
Q Consensus 168 ~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 216 (322)
||.++++++.+++|||+||..+.. ..++++++||+++++|+++++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence 589999999999999999998832 23799999999999999999886
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.99 E-value=9.4e-10 Score=72.89 Aligned_cols=49 Identities=24% Similarity=0.488 Sum_probs=41.8
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 227 (322)
+++|||+||.+... ...++++++||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 58999999998322 12379999999999999999999999999999864
No 35
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.97 E-value=1.9e-09 Score=71.44 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=40.1
Q ss_pred CCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCC
Q 020682 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (322)
Q Consensus 168 ~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 216 (322)
+|.+|++++.+++|||+||..........+++++||+++++|++++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 5899999999999999999921111122699999999999999999875
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.97 E-value=1.8e-09 Score=71.49 Aligned_cols=47 Identities=28% Similarity=0.515 Sum_probs=41.6
Q ss_pred CCcccEEEEECCEEEEEeec--CCCCCCcceeEEEECCCCceEECCCCC
Q 020682 118 PRLDGAAIQIKNLFYVFAGY--GSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (322)
Q Consensus 118 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~~~~W~~~~~~~ 164 (322)
||.+|++++++++|||+||. +......+++++||+++++|+++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 455566789999999999999988774
No 37
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.96 E-value=3.6e-10 Score=105.95 Aligned_cols=128 Identities=15% Similarity=0.245 Sum_probs=99.6
Q ss_pred CCceEECCCC--------CCCCCCceeEEEEeCC--EEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC---CCCCCCC
Q 020682 154 DNKWVDRFDM--------PKDMAHSHLGVVSDGR--YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRY 220 (322)
Q Consensus 154 ~~~W~~~~~~--------~~p~~r~~~~~~~~~~--~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~ 220 (322)
+..|.++... ..|..|.+|.++...+ .||+.||.++.+. +.++|.|....+.|..+. ..|..|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~---l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD---LADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh---HHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 4568876543 2366899999999855 9999999999886 799999999999999985 4788899
Q ss_pred CcEEEEECC--EEEEEeccCCCC------CCCCcceEeeeeeccccccCceEeccC------CCCCcCceeEEEECCE--
Q 020682 221 SPATQLWRG--RLHVMGGSKENR------HTPGLEHWSIAVKDGKALEKAWRTEIP------IPRGGPHRACFVFNDR-- 284 (322)
Q Consensus 221 ~~~~~~~~~--~Lyv~GG~~~~~------~~~~~~~~~~~v~~~~~~~~~W~~~~~------~p~~~~~~~~~~~~~~-- 284 (322)
.|.|+..-. +||++|-+-+.. ...+.+.|| ..++.|..+.- -|..-+.|.++|.+++
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FD-------i~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~ 387 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFD-------IDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM 387 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEe-------cCCceeEEecccccccCCcceeecceeeEecCcce
Confidence 999997655 899999874432 223444555 44999998632 3666677889999999
Q ss_pred EEEEecC
Q 020682 285 LFVVGGQ 291 (322)
Q Consensus 285 lyv~GG~ 291 (322)
|||+||.
T Consensus 388 iyVfGGr 394 (723)
T KOG2437|consen 388 IYVFGGR 394 (723)
T ss_pred EEEecCe
Confidence 9999993
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.96 E-value=2e-09 Score=71.32 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=41.7
Q ss_pred CCEEEEEeecC-CCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682 128 KNLFYVFAGYG-SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 128 ~~~lyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
+++||||||.+ ......+++|+||+.+++|+++.++|. +|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEEC
Confidence 58999999998 456677899999999999999977776 8999999863
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.95 E-value=7.9e-10 Score=73.19 Aligned_cols=47 Identities=30% Similarity=0.544 Sum_probs=32.2
Q ss_pred CCcccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC
Q 020682 118 PRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (322)
Q Consensus 118 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 164 (322)
||.+|+++.+ +++||||||.+.....++++|+||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6999999998 5899999999887777889999999999999997776
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.92 E-value=1.5e-09 Score=71.81 Aligned_cols=48 Identities=27% Similarity=0.544 Sum_probs=30.9
Q ss_pred CCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCC
Q 020682 168 AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS 217 (322)
Q Consensus 168 ~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~ 217 (322)
||.+|+++.. +++|||+||.+.... .+++++.||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~--~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGS--PLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TE--E---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCc--ccCCEEEEECCCCEEEECCCCCC
Confidence 5888999988 589999999987642 27999999999999999988874
No 41
>smart00612 Kelch Kelch domain.
Probab=98.85 E-value=5.1e-09 Score=68.14 Aligned_cols=47 Identities=36% Similarity=0.650 Sum_probs=41.0
Q ss_pred EEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECC
Q 020682 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG 229 (322)
Q Consensus 180 ~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 229 (322)
+||++||..+.. ..+++++||+.+++|+++++||.+|..++++.+++
T Consensus 1 ~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ---RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc---eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 489999986532 26899999999999999999999999999988764
No 42
>smart00612 Kelch Kelch domain.
Probab=98.73 E-value=2e-08 Score=65.29 Aligned_cols=47 Identities=30% Similarity=0.426 Sum_probs=39.8
Q ss_pred EEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCC
Q 020682 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR 179 (322)
Q Consensus 130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 179 (322)
+|||+||.... ...+++++||+.+++|+.+++|+. +|..++++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT--PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC--ccccceEEEeCC
Confidence 48999998653 345789999999999999999988 788998888764
No 43
>PLN02772 guanylate kinase
Probab=98.66 E-value=1.9e-07 Score=87.56 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=69.2
Q ss_pred CCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCC-CCCCCCceeEEEEe-CCEEEEEecccCCCCC
Q 020682 116 PVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSD-GRYIYIVSGQYGPQCR 193 (322)
Q Consensus 116 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~ 193 (322)
..|+..++++.+++++||+||.+......+.+++||..+.+|....-. ..|.+|.+|+++++ +++|+|+++.....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 358899999999999999999877654667899999999999875422 22458999999988 68999998754432
Q ss_pred CCCceEEEEeCCCC
Q 020682 194 GPTSRTFVLDSETR 207 (322)
Q Consensus 194 ~~~~~v~~yd~~t~ 207 (322)
+++|.+...|.
T Consensus 100 ---~~~w~l~~~t~ 110 (398)
T PLN02772 100 ---DSIWFLEVDTP 110 (398)
T ss_pred ---cceEEEEcCCH
Confidence 67888776653
No 44
>PF13854 Kelch_5: Kelch motif
Probab=98.56 E-value=1.6e-07 Score=59.98 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=35.9
Q ss_pred CCCCCcccEEEEECCEEEEEeecCC-CCCCcceeEEEECCC
Q 020682 115 APVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTD 154 (322)
Q Consensus 115 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~ 154 (322)
+|.||.+|+++.++++|||+||... .....+++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4889999999999999999999984 667778999999876
No 45
>PLN02772 guanylate kinase
Probab=98.48 E-value=1e-06 Score=82.75 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=58.9
Q ss_pred CCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC---CCCCCCCCcEEEEE-CCEEEEEeccC
Q 020682 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLW-RGRLHVMGGSK 238 (322)
Q Consensus 168 ~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~-~~~Lyv~GG~~ 238 (322)
++.+++++.+++++||+||.+..... .+.+++||+.|.+|.... +.|.+|.+|+++++ +++|+|+++..
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~~--~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNTL--SIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCccc--cceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 67889999999999999998764321 589999999999999874 67889999999988 56899998754
No 46
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.43 E-value=4.9e-05 Score=67.03 Aligned_cols=181 Identities=14% Similarity=0.218 Sum_probs=109.2
Q ss_pred hccccccCCCCEEECCCCCCCCc--cc--EEEEEC-----CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCC
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRL--DG--AAIQIK-----NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA 168 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~--~~--~~~~~~-----~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~ 168 (322)
.+..+||.+.+|..+++.+.++. .. .....+ -||..+....... ....+++|+..++.|+.+...+....
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCcc
Confidence 57889999999999987554321 11 111122 2565554432111 22468999999999999875432111
Q ss_pred CceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEE-cCCCCCCC----CCcEEEEECCEEEEEeccCCCCCC
Q 020682 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS-IPPLPSPR----YSPATQLWRGRLHVMGGSKENRHT 243 (322)
Q Consensus 169 r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r----~~~~~~~~~~~Lyv~GG~~~~~~~ 243 (322)
... ..+.++|.||-+........ ...+..||..+.+|++ ++ +|..+ ....++.++|+|.++..... .
T Consensus 94 ~~~-~~v~~~G~lyw~~~~~~~~~---~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~---~ 165 (230)
T TIGR01640 94 LKS-RGVCINGVLYYLAYTLKTNP---DYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKD---T 165 (230)
T ss_pred ccC-CeEEECCEEEEEEEECCCCC---cEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCC---C
Confidence 122 25667888888874322111 1379999999999996 54 34332 23467788999988765432 1
Q ss_pred CCcceEeeeeeccccccCceEeccCCC-----CCc--CceeEEEECCEEEEEecC
Q 020682 244 PGLEHWSIAVKDGKALEKAWRTEIPIP-----RGG--PHRACFVFNDRLFVVGGQ 291 (322)
Q Consensus 244 ~~~~~~~~~v~~~~~~~~~W~~~~~~p-----~~~--~~~~~~~~~~~lyv~GG~ 291 (322)
..++.|.++ +++ +.+|++.-.++ ... .....+..+++|++..+.
T Consensus 166 ~~~~IWvl~--d~~--~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~ 216 (230)
T TIGR01640 166 NNFDLWVLN--DAG--KQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED 216 (230)
T ss_pred CcEEEEEEC--CCC--CCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC
Confidence 347788754 343 55699853322 111 123456678888887763
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.40 E-value=7.3e-07 Score=56.87 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=33.2
Q ss_pred CCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682 166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 166 p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~ 207 (322)
|.+|.+|++++++++|||+||... .....++++|+||+.+.
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCCC
Confidence 348999999999999999999985 11223799999999763
No 48
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.75 E-value=0.0013 Score=58.64 Aligned_cols=157 Identities=13% Similarity=0.144 Sum_probs=94.4
Q ss_pred EEEeecCCCCCCcceeEEEECCCCc--------eE---ECCCCCCCCCCceeEEEEe----CCEEEEEecccCCC-----
Q 020682 132 YVFAGYGSLDYVHSHVDVYNFTDNK--------WV---DRFDMPKDMAHSHLGVVSD----GRYIYIVSGQYGPQ----- 191 (322)
Q Consensus 132 yv~GG~~~~~~~~~~v~~yd~~~~~--------W~---~~~~~~~p~~r~~~~~~~~----~~~Iyv~GG~~~~~----- 191 (322)
++-||...++++.+++|+....... .+ .+.+.|. +|++|++-++ +....+|||..-..
T Consensus 42 lIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 42 LIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred EecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 4458888888888888887665433 11 1334555 8999999887 34578889863110
Q ss_pred ------CCCCCceEEEEeCCCCcEE--EcCCCCCCCCCcEEEEECCEEEEEeccCCC--CCCCCcceEeeeeeccccccC
Q 020682 192 ------CRGPTSRTFVLDSETRKWD--SIPPLPSPRYSPATQLWRGRLHVMGGSKEN--RHTPGLEHWSIAVKDGKALEK 261 (322)
Q Consensus 192 ------~~~~~~~v~~yd~~t~~W~--~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~--~~~~~~~~~~~~v~~~~~~~~ 261 (322)
.......|+..|++-+..+ .+|.+....+.|.+..-+|.+|++||..-. ...+.+.+..+++....|. -
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~-v 198 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPA-V 198 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCce-e
Confidence 0011356888898877665 356777888999999999999999998543 2344454444432222211 0
Q ss_pred ceEeccCCCCCcCceeEE---EECCEEEEEecCCCC
Q 020682 262 AWRTEIPIPRGGPHRACF---VFNDRLFVVGGQEGD 294 (322)
Q Consensus 262 ~W~~~~~~p~~~~~~~~~---~~~~~lyv~GG~~~~ 294 (322)
.-+. ++.+..-.+++ +-.++.+|+|||..+
T Consensus 199 sC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 199 SCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred EEEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 1111 22222111111 224778899998754
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.73 E-value=0.0011 Score=58.85 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=87.1
Q ss_pred eEEEECCCCceEECCCCCCCCCCceeEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCC----CcEEEcC-CCCCCCC
Q 020682 147 VDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET----RKWDSIP-PLPSPRY 220 (322)
Q Consensus 147 v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t----~~W~~~~-~~p~~r~ 220 (322)
-..||+.+++++.+..... -.+.+.++ -++++.+.||.... ...+..|++.+ ..|.+.+ .|..+|.
T Consensus 48 s~~yD~~tn~~rpl~v~td---~FCSgg~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTD---TFCSGGAFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEeccCCCC---CcccCcCCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcccccCCCc
Confidence 4569999999998765433 23333333 37899999997542 35677788765 6799886 5889999
Q ss_pred CcEEEEE-CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEecc----CCCCCcCceeEEEECCEEEEEecCCCCC
Q 020682 221 SPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI----PIPRGGPHRACFVFNDRLFVVGGQEGDF 295 (322)
Q Consensus 221 ~~~~~~~-~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~----~~p~~~~~~~~~~~~~~lyv~GG~~~~~ 295 (322)
+++++.+ +|+++|+||.... +.|.|.-.- .......|..+. ..+...+-+..+.-+|+||+++... ..
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~--~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~ 192 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP----TYEFWPPKG--PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SI 192 (243)
T ss_pred cccceECCCCCEEEEeCcCCC----cccccCCcc--CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cE
Confidence 9988765 6789999998632 122221000 000111222222 2334444445666799999999864 33
Q ss_pred CCCCCCC
Q 020682 296 MAKPGSP 302 (322)
Q Consensus 296 ~~~p~~~ 302 (322)
.+|+...
T Consensus 193 i~d~~~n 199 (243)
T PF07250_consen 193 IYDYKTN 199 (243)
T ss_pred EEeCCCC
Confidence 4455543
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.63 E-value=0.0034 Score=55.19 Aligned_cols=136 Identities=13% Similarity=0.118 Sum_probs=79.2
Q ss_pred eeEEEECCCCceEECCCCCCCC---CCceeEEEEe---CC-EEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCC
Q 020682 146 HVDVYNFTDNKWVDRFDMPKDM---AHSHLGVVSD---GR-YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP 218 (322)
Q Consensus 146 ~v~~yd~~~~~W~~~~~~~~p~---~r~~~~~~~~---~~-~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~ 218 (322)
.+.++||.|.+|..+++.+.+. .+...+.... ++ ||..+....+.. ....+++|+..++.|+.+...+..
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---~~~~~~Vys~~~~~Wr~~~~~~~~ 91 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---NQSEHQVYTLGSNSWRTIECSPPH 91 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---CCccEEEEEeCCCCccccccCCCC
Confidence 5899999999999997654310 1111222221 12 455554322111 136789999999999998743321
Q ss_pred -CCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCc----CceeEEEECCEEEEEecC
Q 020682 219 -RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG----PHRACFVFNDRLFVVGGQ 291 (322)
Q Consensus 219 -r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~----~~~~~~~~~~~lyv~GG~ 291 (322)
......+.++|.||-+.-.........+-.|| ..+++|....++|... ....++.++|+|.++...
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFD-------l~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~ 162 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFD-------VSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQK 162 (230)
T ss_pred ccccCCeEEECCEEEEEEEECCCCCcEEEEEEE-------cccceEeeeeecCccccccccceEEEEECCEEEEEEec
Confidence 11222677899999887533211111233333 4588898533444332 234678889999988764
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.40 E-value=0.0028 Score=56.21 Aligned_cols=148 Identities=13% Similarity=0.130 Sum_probs=87.9
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCC----CceEECC-CCCCCCCCcee
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDRF-DMPKDMAHSHL 172 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~-~~~~p~~r~~~ 172 (322)
.-..||+.+++++.+.-..-.-+...+..-++++.+.||..... ..+-.|++.+ ..|.+.. .|.. +|-..
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~e~~~~m~~--~RWYp 121 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWTESPNDMQS--GRWYP 121 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccc---cceEEEecCCCCCCCCceECcccccC--CCccc
Confidence 45678999999987643222222222222378999999975422 2467788875 6798875 4777 67777
Q ss_pred EEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC-----CcEEEcCC----CCCCCCCcEEEEECCEEEEEeccCCCCC
Q 020682 173 GVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET-----RKWDSIPP----LPSPRYSPATQLWRGRLHVMGGSKENRH 242 (322)
Q Consensus 173 ~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t-----~~W~~~~~----~p~~r~~~~~~~~~~~Lyv~GG~~~~~~ 242 (322)
++..+ +++++|+||.... ..+.+.... ..|..+.. .+..-+=+....-+|+||+++...
T Consensus 122 T~~~L~DG~vlIvGG~~~~-------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~---- 190 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNP-------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG---- 190 (243)
T ss_pred cceECCCCCEEEEeCcCCC-------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC----
Confidence 77776 8899999998632 223333321 12322221 222333334455688999998853
Q ss_pred CCCcceEeeeeeccccccCce-EeccCCCC
Q 020682 243 TPGLEHWSIAVKDGKALEKAW-RTEIPIPR 271 (322)
Q Consensus 243 ~~~~~~~~~~v~~~~~~~~~W-~~~~~~p~ 271 (322)
...|| +.++++ ..++++|.
T Consensus 191 ---s~i~d-------~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 191 ---SIIYD-------YKTNTVVRTLPDLPG 210 (243)
T ss_pred ---cEEEe-------CCCCeEEeeCCCCCC
Confidence 22233 336666 56666663
No 52
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.98 E-value=0.019 Score=53.78 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=73.2
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCc----ceeEEE--E--------CCCCceEECCCC
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVH----SHVDVY--N--------FTDNKWVDRFDM 163 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~----~~v~~y--d--------~~~~~W~~~~~~ 163 (322)
....||..+..-..+|.++.+.....++.++++||++.......... ..++++ + .....|+.+++.
T Consensus 87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P 166 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP 166 (342)
T ss_pred CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence 36788998888888888888777778888899999998763332110 034444 4 233468887765
Q ss_pred CCCCCCc-----eeEEEEe-CCEEEE-EecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCC
Q 020682 164 PKDMAHS-----HLGVVSD-GRYIYI-VSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP 218 (322)
Q Consensus 164 ~~p~~r~-----~~~~~~~-~~~Iyv-~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~ 218 (322)
|-..... -.+-+++ +..||| .-|.. .-.+.||+.+.+|+++....-|
T Consensus 167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred CccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccceecC
Confidence 5421111 2344445 788998 43321 2478999999999999754333
No 53
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=96.98 E-value=0.07 Score=47.85 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=72.7
Q ss_pred CCCCCCCCcccEEEEE---C-CEEEEEeecCCC-------C------CCcceeEEEECCCCceEE--CCCCCCCCCCcee
Q 020682 112 MPSAPVPRLDGAAIQI---K-NLFYVFAGYGSL-------D------YVHSHVDVYNFTDNKWVD--RFDMPKDMAHSHL 172 (322)
Q Consensus 112 ~~~~p~~r~~~~~~~~---~-~~lyv~GG~~~~-------~------~~~~~v~~yd~~~~~W~~--~~~~~~p~~r~~~ 172 (322)
+.+.|.+|.+|++.++ | .-..+|||..-. + .....|+..|++-...+. ++.+.. .-+.|
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~d--G~SFH 158 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQD--GQSFH 158 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcC--CeEEE
Confidence 4678999999999766 2 236778987210 0 122357777887665543 455555 67888
Q ss_pred EEEEeCCEEEEEecccCCCCCCCCceEEEEeCCC---CcEEEcCCCCCCCCCcEEE--EE-CCEEEEEeccCCC
Q 020682 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET---RKWDSIPPLPSPRYSPATQ--LW-RGRLHVMGGSKEN 240 (322)
Q Consensus 173 ~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t---~~W~~~~~~p~~r~~~~~~--~~-~~~Lyv~GG~~~~ 240 (322)
.+..-++.+|++||..-..... ...++....+- .-...-.-++...+-.++. .. .++.+|+||+...
T Consensus 159 vslar~D~VYilGGHsl~sd~R-pp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 159 VSLARNDCVYILGGHSLESDSR-PPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred EEEecCceEEEEccEEccCCCC-CCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence 8888899999999986433211 23444443221 1111111233333322222 22 3568889998643
No 54
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.95 E-value=0.09 Score=49.33 Aligned_cols=124 Identities=23% Similarity=0.240 Sum_probs=77.2
Q ss_pred EEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeee
Q 020682 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (322)
Q Consensus 175 ~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~ 254 (322)
+..+++|+.++.. ..+.+||++|..=..+|.|+.+.....++.++++||++..............-.+++.
T Consensus 73 al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 73 ALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred EecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence 3358999998653 4478999999998888888888778888889999999987643321111110034444
Q ss_pred ccc--------cccCceEeccCCCCCcC-------ceeEEEE-CCEEEE-EecC-CCCCCCCCCCCeeeee
Q 020682 255 DGK--------ALEKAWRTEIPIPRGGP-------HRACFVF-NDRLFV-VGGQ-EGDFMAKPGSPIFKCS 307 (322)
Q Consensus 255 ~~~--------~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~lyv-~GG~-~~~~~~~p~~~~~~~~ 307 (322)
.|+ ...-.|..+++.|-... -.+-+++ +..|+| +-|. .|.+.|+..+..|.++
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 443 23446777766542221 1234555 777888 5543 2556666666644433
No 55
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.35 E-value=0.072 Score=48.44 Aligned_cols=120 Identities=14% Similarity=0.181 Sum_probs=71.4
Q ss_pred EEEEeecCCCCC-CcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCc
Q 020682 131 FYVFAGYGSLDY-VHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (322)
Q Consensus 131 lyv~GG~~~~~~-~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 208 (322)
|||-|-+...+. ....+-.||+++.+|..+..-.. . .-.++... ++++|+.|-..-... ....+-.||.++.+
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~--G-~V~~l~~~~~~~Llv~G~ft~~~~--~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS--G-TVTDLQWASNNQLLVGGNFTLNGT--NSSNLATYDFKNQT 75 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce--E-EEEEEEEecCCEEEEEEeeEECCC--CceeEEEEecCCCe
Confidence 355555555443 23468889999999998765432 2 22334433 788888875543331 14778899999999
Q ss_pred EEEcCCC-----CCCCCCcEEEEE---CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccC
Q 020682 209 WDSIPPL-----PSPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP 268 (322)
Q Consensus 209 W~~~~~~-----p~~r~~~~~~~~---~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~ 268 (322)
|..++.. |.+. .+.... .+++++.|.... -..-+..|| ..+|..+..
T Consensus 76 w~~~~~~~s~~ipgpv--~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~d---------Gs~W~~i~~ 130 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPV--TALTFISNDGSNFWVAGRSAN--GSTFLMKYD---------GSSWSSIGS 130 (281)
T ss_pred eeecCCcccccCCCcE--EEEEeeccCCceEEEeceecC--CCceEEEEc---------CCceEeccc
Confidence 9998752 3332 122221 235777766421 122344554 678887654
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.63 E-value=1.3 Score=38.32 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=89.1
Q ss_pred hccccccCCC--CEEECCCCCCCCcccE--EEEECCEEEEEeecCCCCCCcceeEEEECCCCc--eEECCCCCCCCCCce
Q 020682 98 TFADLPAPDL--EWEQMPSAPVPRLDGA--AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSH 171 (322)
Q Consensus 98 ~~~~yd~~~~--~W~~~~~~p~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~p~~r~~ 171 (322)
.+..+|+.+. .|+.- +..+..... .+..++.+|+..+. ..++++|+.+.+ |+.-. +. +..
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~--~~---~~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDL--PG---PIS 69 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEEC--SS---CGG
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeec--cc---ccc
Confidence 3556666544 47652 211233333 34478999998432 469999986654 76643 32 111
Q ss_pred eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EE-EcCCCCC--CCCCcEEEEECCEEEEEeccCCCCCCCCc
Q 020682 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WD-SIPPLPS--PRYSPATQLWRGRLHVMGGSKENRHTPGL 246 (322)
Q Consensus 172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~-~~~~~p~--~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~ 246 (322)
....+.++.||+..+ -..+..+|.++.+ |+ .....+. .+......+.++.+|+... ...+
T Consensus 70 ~~~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l 134 (238)
T PF13360_consen 70 GAPVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKL 134 (238)
T ss_dssp SGEEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEE
T ss_pred ceeeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcE
Confidence 224778999998763 2588999987765 98 4543232 2334445556777776653 1124
Q ss_pred ceEeeeeeccccccCceEeccCCCCCcC--------ceeEEEECCEEEEEecCC
Q 020682 247 EHWSIAVKDGKALEKAWRTEIPIPRGGP--------HRACFVFNDRLFVVGGQE 292 (322)
Q Consensus 247 ~~~~~~v~~~~~~~~~W~~~~~~p~~~~--------~~~~~~~~~~lyv~GG~~ 292 (322)
..++++ ..+..|+.....++... ....+..++.+|+..+..
T Consensus 135 ~~~d~~-----tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 135 VALDPK-----TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp EEEETT-----TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred EEEecC-----CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 444422 33556777555544322 123444567888887655
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.10 E-value=2.1 Score=40.70 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=66.9
Q ss_pred hccccccCCC--CEEECCCCC--------CCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCC
Q 020682 98 TFADLPAPDL--EWEQMPSAP--------VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPK 165 (322)
Q Consensus 98 ~~~~yd~~~~--~W~~~~~~p--------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~ 165 (322)
.+..+|..+. .|+.-..-. .++.....+..+++||+.+.. ..++++|.++- .|+.-.+ .
T Consensus 80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~--~ 150 (394)
T PRK11138 80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKVA--G 150 (394)
T ss_pred eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccCC--C
Confidence 4677887654 687542210 112233456678999975431 35899998754 5876322 1
Q ss_pred CCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCCCC--CCCCcEEEEECCEEEEEe
Q 020682 166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPS--PRYSPATQLWRGRLHVMG 235 (322)
Q Consensus 166 p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~Lyv~G 235 (322)
+ ...+-++.++.+|+..+ ...++.+|+++.+ |+.-...|. .+...+-++.++.+|+..
T Consensus 151 ~---~~ssP~v~~~~v~v~~~---------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~ 212 (394)
T PRK11138 151 E---ALSRPVVSDGLVLVHTS---------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGG 212 (394)
T ss_pred c---eecCCEEECCEEEEECC---------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEc
Confidence 1 12233556888888543 2578999998876 876543222 122233345677776643
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.98 E-value=0.88 Score=43.32 Aligned_cols=137 Identities=16% Similarity=0.156 Sum_probs=74.0
Q ss_pred EEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCC------CCCCceeEEEEeCCEEEEEecccCCCCCCC
Q 020682 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPK------DMAHSHLGVVSDGRYIYIVSGQYGPQCRGP 195 (322)
Q Consensus 124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~------p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~ 195 (322)
-++.+++||+.... ..+++||.++. .|+.-..-.. +.++...+.++.+++||+.+.
T Consensus 65 Pvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--------- 128 (394)
T PRK11138 65 PAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--------- 128 (394)
T ss_pred cEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---------
Confidence 35679999998653 25888998744 4876322110 002333456778999997432
Q ss_pred CceEEEEeCCCCc--EEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCC-
Q 020682 196 TSRTFVLDSETRK--WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG- 272 (322)
Q Consensus 196 ~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~- 272 (322)
...++.+|.+|.+ |+.-.+- + ...+-++.++.+|+..+. ..+..+|.+ ..+..|+.....|..
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~~--~-~~ssP~v~~~~v~v~~~~------g~l~ald~~-----tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVAG--E-ALSRPVVSDGLVLVHTSN------GMLQALNES-----DGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEECCCCCCcccccCCC--c-eecCCEEECCEEEEECCC------CEEEEEEcc-----CCCEeeeecCCCCccc
Confidence 2578999988764 8754321 1 112234568888875432 124444432 334558775433311
Q ss_pred -cCceeEEEECCEEEEEec
Q 020682 273 -GPHRACFVFNDRLFVVGG 290 (322)
Q Consensus 273 -~~~~~~~~~~~~lyv~GG 290 (322)
+...+-++.++.+|+..+
T Consensus 195 ~~~~~sP~v~~~~v~~~~~ 213 (394)
T PRK11138 195 LRGESAPATAFGGAIVGGD 213 (394)
T ss_pred ccCCCCCEEECCEEEEEcC
Confidence 111133445666655443
No 59
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.24 E-value=3 Score=40.33 Aligned_cols=104 Identities=9% Similarity=-0.002 Sum_probs=56.2
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.++.+|..+.+-+.+...+..........-+++|++....++. .+++++|+.+.+-+++..... .....+....
T Consensus 229 ~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~----~~Iy~~d~~~g~~~~lt~~~~--~~~~~~~spD 302 (433)
T PRK04922 229 AIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGN----PEIYVMDLGSRQLTRLTNHFG--IDTEPTWAPD 302 (433)
T ss_pred EEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCC----ceEEEEECCCCCeEECccCCC--CccceEECCC
Confidence 3566677666666665544322222222234566554433322 369999999887766654322 1112222223
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 213 (322)
+.+|+......+ ...++.+|..++..+++.
T Consensus 303 G~~l~f~sd~~g------~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 303 GKSIYFTSDRGG------RPQIYRVAASGGSAERLT 332 (433)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCeEEee
Confidence 445555433221 257899999888888775
No 60
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.90 E-value=4.9 Score=38.58 Aligned_cols=104 Identities=11% Similarity=0.039 Sum_probs=56.6
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.++.+|..+.+-+.+...+..-.......-+++|++....++. .+++++|..+...+++..... .-........
T Consensus 224 ~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~----~~Iy~~d~~~~~~~~lt~~~~--~~~~~~~spD 297 (430)
T PRK00178 224 RIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGN----PEIYVMDLASRQLSRVTNHPA--IDTEPFWGKD 297 (430)
T ss_pred EEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCC----ceEEEEECCCCCeEEcccCCC--CcCCeEECCC
Confidence 4566676666666655433211111222224556544332222 469999999998887765332 1111222223
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 213 (322)
+++|+......+ ...++.+|..+++++++.
T Consensus 298 g~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 298 GRTLYFTSDRGG------KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 456665532211 257899999999888875
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.80 E-value=4 Score=35.23 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=86.3
Q ss_pred hhccccccCCC--CEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceE-ECCCCCCCCCCce
Q 020682 97 ATFADLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWV-DRFDMPKDMAHSH 171 (322)
Q Consensus 97 ~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~-~~~~~~~p~~r~~ 171 (322)
..+..+|..+. .|+.-. +.+-... ....++.||+..+. ..++.+|.++. .|+ .....+....+..
T Consensus 46 ~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 115 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDL--PGPISGA-PVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVRSS 115 (238)
T ss_dssp SEEEEEETTTSEEEEEEEC--SSCGGSG-EEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB--
T ss_pred CEEEEEECCCCCEEEEeec--cccccce-eeecccccccccce-------eeeEecccCCcceeeeeccccccccccccc
Confidence 35778887665 466543 2221222 46778999888732 25899997654 498 4433222112345
Q ss_pred eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCCCCCCC--------CcEEEEECCEEEEEeccCCCC
Q 020682 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRY--------SPATQLWRGRLHVMGGSKENR 241 (322)
Q Consensus 172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~--------~~~~~~~~~~Lyv~GG~~~~~ 241 (322)
....+.++.+|+... ...+..+|+++++ |+.-...+..-. ....+..++.+|+..+...
T Consensus 116 ~~~~~~~~~~~~~~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-- 184 (238)
T PF13360_consen 116 SSPAVDGDRLYVGTS---------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-- 184 (238)
T ss_dssp SEEEEETTEEEEEET---------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS--
T ss_pred cCceEecCEEEEEec---------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe--
Confidence 556666888887654 2788999999875 776544333111 1233444678888766431
Q ss_pred CCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEe
Q 020682 242 HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG 289 (322)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~G 289 (322)
+-..++ ......|+.. +. ... ......++.||+..
T Consensus 185 ----~~~~d~-----~tg~~~w~~~--~~-~~~-~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 185 ----VVAVDL-----ATGEKLWSKP--IS-GIY-SLPSVDGGTLYVTS 219 (238)
T ss_dssp ----EEEEET-----TTTEEEEEEC--SS--EC-ECEECCCTEEEEEE
T ss_pred ----EEEEEC-----CCCCEEEEec--CC-Ccc-CCceeeCCEEEEEe
Confidence 222232 2222338443 11 111 12556677787777
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.60 E-value=0.69 Score=42.09 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=66.3
Q ss_pred hhhccccccCCCCEEECCCCCCCCcccEEEE-ECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC---CCCCCce
Q 020682 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP---KDMAHSH 171 (322)
Q Consensus 96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~p~~r~~ 171 (322)
...+..||....+|..+..--... -..+.- -+++||+.|-....+.-...+-.||.++.+|..+.... .|.+-..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 346889999999999876531111 112222 27888888876444422345889999999998876621 1112221
Q ss_pred eEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682 172 LGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 172 ~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 214 (322)
..... ..+.+++.|.. ... ..-+..|| -.+|+.+..
T Consensus 94 ~~~~~~d~~~~~~aG~~-~~g----~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRS-ANG----STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEecee-cCC----CceEEEEc--CCceEeccc
Confidence 12121 24578887765 221 35666775 558998864
No 63
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.84 E-value=6.4 Score=38.27 Aligned_cols=104 Identities=9% Similarity=0.000 Sum_probs=58.3
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.++.+|..+.+-+.+...+..........-++.|++....++. .+++.+|.++.+.+++..... .....+....
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~----~~Iy~~dl~tg~~~~lt~~~~--~~~~p~wSpD 316 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQ----PEIYVVDIATKALTRITRHRA--IDTEPSWHPD 316 (448)
T ss_pred EEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCC----eEEEEEECCCCCeEECccCCC--CccceEECCC
Confidence 4666677666655555443222222222335566665443322 369999999988887755322 1111222223
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 213 (322)
+.+|++.....+ ...++.+|..+++++++.
T Consensus 317 G~~I~f~s~~~g------~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 317 GKSLIFTSERGG------KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCEEEEe
Confidence 455655442211 268999999999998874
No 64
>smart00284 OLF Olfactomedin-like domains.
Probab=92.79 E-value=1.9 Score=38.58 Aligned_cols=141 Identities=17% Similarity=0.220 Sum_probs=76.5
Q ss_pred CCEEEEEeecCCCCCCcceeEEEEC----CCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEe
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNF----TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~----~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd 203 (322)
.+++|++.+.+... +.++.|.. ....+...-.+|. +-.+.+.++.++.+|.--.. ...+..||
T Consensus 34 ~~~~wv~~~~~~~~---~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~GtG~VVYngslYY~~~~--------s~~iiKyd 100 (255)
T smart00284 34 KSLYWYMPLNTRVL---RSVREYSSMSDFQMGKNPTDHPLPH--AGQGTGVVVYNGSLYFNKFN--------SHDICRFD 100 (255)
T ss_pred CceEEEEccccCCC---cEEEEecCHHHHhccCCceEEECCC--ccccccEEEECceEEEEecC--------CccEEEEE
Confidence 47888886653111 23555532 2333333334555 56778889999999984331 47899999
Q ss_pred CCCCcEEEcCCCCCCC----C-----C---cEEEEECCEEEEE---eccCCCCCCCCcceEeeeeeccccccCceEeccC
Q 020682 204 SETRKWDSIPPLPSPR----Y-----S---PATQLWRGRLHVM---GGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP 268 (322)
Q Consensus 204 ~~t~~W~~~~~~p~~r----~-----~---~~~~~~~~~Lyv~---GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~ 268 (322)
+.+.+=.....+|.+. . + .-.++..+-|+|+ ....+......++-.++++ ...|.. +
T Consensus 101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~v------e~tW~T--~ 172 (255)
T smart00284 101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTI------ENTWIT--T 172 (255)
T ss_pred CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceE------EEEEEc--C
Confidence 9998865444344321 1 1 2233444556665 2222221212222222221 456766 4
Q ss_pred CCCCcCceeEEEECCEEEEEec
Q 020682 269 IPRGGPHRACFVFNDRLFVVGG 290 (322)
Q Consensus 269 ~p~~~~~~~~~~~~~~lyv~GG 290 (322)
.++...+ .+.++-|.||++-.
T Consensus 173 ~~k~sa~-naFmvCGvLY~~~s 193 (255)
T smart00284 173 YNKRSAS-NAFMICGILYVTRS 193 (255)
T ss_pred CCccccc-ccEEEeeEEEEEcc
Confidence 4444443 56677789999963
No 65
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.69 E-value=2.1 Score=33.89 Aligned_cols=82 Identities=13% Similarity=0.276 Sum_probs=55.4
Q ss_pred EeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC---CCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeee
Q 020682 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA 252 (322)
Q Consensus 176 ~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~ 252 (322)
..||-+|-..-..... ...+..||.++.+|+.++. .........++.++|+|-++.-..... ...++.|-++
T Consensus 3 cinGvly~~a~~~~~~----~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe 77 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSD----NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE 77 (129)
T ss_pred EECcEEEeEEEECCCC----CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence 3567677665541111 4789999999999998853 234566778889999998875543222 3457777755
Q ss_pred eeccccccCceEec
Q 020682 253 VKDGKALEKAWRTE 266 (322)
Q Consensus 253 v~~~~~~~~~W~~~ 266 (322)
|++ +.+|++.
T Consensus 78 --D~~--k~~Wsk~ 87 (129)
T PF08268_consen 78 --DYE--KQEWSKK 87 (129)
T ss_pred --ccc--cceEEEE
Confidence 443 7899975
No 66
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.53 E-value=11 Score=36.51 Aligned_cols=171 Identities=9% Similarity=-0.001 Sum_probs=79.0
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.++.+|..+.+-+.+...+..-.......-+.+|++.....+. .+++.+|.++.+.+++..... .-......-.
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~----~~I~~~d~~tg~~~~lt~~~~--~~~~~~wSPD 297 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGS----LNLYVMDLASGQIRQVTDGRS--NNTEPTWFPD 297 (429)
T ss_pred EEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCC----cEEEEEECCCCCEEEccCCCC--CcCceEECCC
Confidence 3445555555545554443221122222224556555332221 258999999888777654432 1111121222
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCE-EEEEeccCCCCCCCCcceEeeeeecc
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGR-LHVMGGSKENRHTPGLEHWSIAVKDG 256 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~-Lyv~GG~~~~~~~~~~~~~~~~v~~~ 256 (322)
++.|+......+ ...++.+|+.+..-+++..... ........-+|+ |+..+...+ ...+..++
T Consensus 298 G~~I~f~s~~~g------~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~d------ 361 (429)
T PRK03629 298 SQNLAYTSDQAG------RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG---QQHIAKQD------ 361 (429)
T ss_pred CCEEEEEeCCCC------CceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC---CceEEEEE------
Confidence 444544332211 2588899998887776643211 111222233454 444433222 11233333
Q ss_pred ccccCceEeccCCCCCcCceeEEEECCEEEEEecCCC
Q 020682 257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG 293 (322)
Q Consensus 257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~ 293 (322)
..++.++.+..... ... ....-+++.+++.+.++
T Consensus 362 -l~~g~~~~Lt~~~~-~~~-p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 362 -LATGGVQVLTDTFL-DET-PSIAPNGTMVIYSSSQG 395 (429)
T ss_pred -CCCCCeEEeCCCCC-CCC-ceECCCCCEEEEEEcCC
Confidence 34677776653221 111 22335666666665543
No 67
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.46 E-value=2.6 Score=38.81 Aligned_cols=143 Identities=11% Similarity=0.092 Sum_probs=80.1
Q ss_pred CEEEEEeec-C--CCCCCc-ceeEEEECCCC-----ceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceE
Q 020682 129 NLFYVFAGY-G--SLDYVH-SHVDVYNFTDN-----KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT 199 (322)
Q Consensus 129 ~~lyv~GG~-~--~~~~~~-~~v~~yd~~~~-----~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v 199 (322)
...+++|.. . +..... ..+.+|+..+. +.+.+..... .-.-.+++..+++|.+.-| ..+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~~~~lv~~~g----------~~l 109 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSFNGRLVVAVG----------NKL 109 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEETTEEEEEET----------TEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhhCCEEEEeec----------CEE
Confidence 456666654 1 112122 56899999885 5555544433 2235677778998776665 678
Q ss_pred EEEeCCCCc-EEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeE
Q 020682 200 FVLDSETRK-WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC 278 (322)
Q Consensus 200 ~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~ 278 (322)
..|+...+. +.+.+.+..+-....+.+.++.|++- -. ..++..+. |+.+..+-..++.-+..+.-.++
T Consensus 110 ~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vg-D~-----~~sv~~~~-----~~~~~~~l~~va~d~~~~~v~~~ 178 (321)
T PF03178_consen 110 YVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVG-DA-----MKSVSLLR-----YDEENNKLILVARDYQPRWVTAA 178 (321)
T ss_dssp EEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEE-ES-----SSSEEEEE-----EETTTE-EEEEEEESS-BEEEEE
T ss_pred EEEEccCcccchhhheecceEEEEEEeccccEEEEE-Ec-----ccCEEEEE-----EEccCCEEEEEEecCCCccEEEE
Confidence 888888888 88888766665667777888866643 32 12233332 22333444555443333333355
Q ss_pred EEE-CCEEEEEecCCCC
Q 020682 279 FVF-NDRLFVVGGQEGD 294 (322)
Q Consensus 279 ~~~-~~~lyv~GG~~~~ 294 (322)
..+ ++..++++-..+.
T Consensus 179 ~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 179 EFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp EEE-SSSEEEEEETTSE
T ss_pred EEecCCcEEEEEcCCCe
Confidence 555 5555555544444
No 68
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.28 E-value=6.3 Score=37.04 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=66.6
Q ss_pred ECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeC
Q 020682 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (322)
Q Consensus 127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~ 204 (322)
.++.+|+..+. ..++.+|+++. .|+.-...+....+...+.++.++.+|+ |.. ...+..+|+
T Consensus 144 ~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~--------~g~v~ald~ 207 (377)
T TIGR03300 144 ANGLVVVRTND-------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA--------GGKLVALDL 207 (377)
T ss_pred ECCEEEEECCC-------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC--------CCEEEEEEc
Confidence 45666664321 35888998754 4875432221001222344556676654 321 257889998
Q ss_pred CCCc--EEEcCCCCCCC--------CCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcC
Q 020682 205 ETRK--WDSIPPLPSPR--------YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP 274 (322)
Q Consensus 205 ~t~~--W~~~~~~p~~r--------~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~ 274 (322)
++.+ |+.--..+... .....++.++.+|+.+.. ..+.+++.+ ..+..|+.... ..
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~-----tG~~~W~~~~~---~~- 272 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLR-----SGRVLWKRDAS---SY- 272 (377)
T ss_pred cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECC-----CCcEEEeeccC---Cc-
Confidence 8764 86532222111 122334567888875432 125555532 33455866421 11
Q ss_pred ceeEEEECCEEEEEec
Q 020682 275 HRACFVFNDRLFVVGG 290 (322)
Q Consensus 275 ~~~~~~~~~~lyv~GG 290 (322)
...++.++++|+...
T Consensus 273 -~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 273 -QGPAVDDNRLYVTDA 287 (377)
T ss_pred -cCceEeCCEEEEECC
Confidence 134456777877653
No 69
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.10 E-value=2.2 Score=40.81 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=85.0
Q ss_pred CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC-CCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t 206 (322)
...|.+.+|.++.- .++.-|-++|. .+..+.- ..|-..+..+..|....+++|. ..-++.||.++
T Consensus 224 ~~plllvaG~d~~l----rifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~ 289 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTL----RIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLET 289 (514)
T ss_pred CCceEEEecCCCcE----EEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--------ceEEEEeeccc
Confidence 45688888876543 36667777776 3333321 0122222333334436666664 35678999999
Q ss_pred CcEEEcCCC---CCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECC
Q 020682 207 RKWDSIPPL---PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283 (322)
Q Consensus 207 ~~W~~~~~~---p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 283 (322)
.+-+++.++ +..-...-.+.-++.++++-|..+.. ... ...+++|-.--.++..-...+...-+.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I-----~lL-------hakT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI-----HLL-------HAKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceE-----Eee-------hhhhhhhhheeeeccEEeeEEEecCCc
Confidence 998888654 21111222334455677777765531 111 134666654444443333333344456
Q ss_pred EEEEEecCCCCCCCCCCCCeeeeeEe
Q 020682 284 RLFVVGGQEGDFMAKPGSPIFKCSRR 309 (322)
Q Consensus 284 ~lyv~GG~~~~~~~~p~~~~~~~~~~ 309 (322)
+|++.||+....++|.+.+ .|.+|
T Consensus 358 ~l~~~~~~GeV~v~nl~~~--~~~~r 381 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQN--SCLHR 381 (514)
T ss_pred EEEEEcCCceEEEEecCCc--ceEEE
Confidence 6888888776677777776 44443
No 70
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.92 E-value=11 Score=35.37 Aligned_cols=117 Identities=19% Similarity=0.247 Sum_probs=60.0
Q ss_pred eeEEEECCCC--ceEECCCCCCC---CC---CceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCC
Q 020682 146 HVDVYNFTDN--KWVDRFDMPKD---MA---HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPL 215 (322)
Q Consensus 146 ~v~~yd~~~~--~W~~~~~~~~p---~~---r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~ 215 (322)
.+..+|+++. .|+.-...+.. .. ......++.++.||+... ...+++||+++.+ |..-.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~---------~g~l~a~d~~tG~~~W~~~~-- 269 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY---------QGRVAALDLRSGRVLWKRDA-- 269 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc---------CCEEEEEECCCCcEEEeecc--
Confidence 5788888754 48653222110 00 112234456888888653 2578899998764 76531
Q ss_pred CCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEe
Q 020682 216 PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG 289 (322)
Q Consensus 216 p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~G 289 (322)
+ .....++.+++||+... ...+.+++.. ..+..|+... +... ...+.++.+++||+..
T Consensus 270 ~---~~~~p~~~~~~vyv~~~------~G~l~~~d~~-----tG~~~W~~~~-~~~~-~~ssp~i~g~~l~~~~ 327 (377)
T TIGR03300 270 S---SYQGPAVDDNRLYVTDA------DGVVVALDRR-----SGSELWKNDE-LKYR-QLTAPAVVGGYLVVGD 327 (377)
T ss_pred C---CccCceEeCCEEEEECC------CCeEEEEECC-----CCcEEEcccc-ccCC-ccccCEEECCEEEEEe
Confidence 1 12234467888988642 1224455432 2344576522 1111 1113344566666543
No 71
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.84 E-value=1.6 Score=39.26 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=74.6
Q ss_pred ceeEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcce
Q 020682 170 SHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH 248 (322)
Q Consensus 170 ~~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~ 248 (322)
.--+..+ .++.+|.--|..+ .+.+..||++|++=....++|..-++=+++.++++||.+-=.. .....
T Consensus 46 FTQGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f~ 114 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----GTGFV 114 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----SEEEE
T ss_pred cCccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC-----CeEEE
Confidence 4445555 6789999888765 3789999999999877778888888889999999999873221 12333
Q ss_pred EeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCCCCCCCC
Q 020682 249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGS 301 (322)
Q Consensus 249 ~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~p~~ 301 (322)
|| .+..+.+...+-...+-+.+.-+..|++--|.+.....+|..
T Consensus 115 yd---------~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 115 YD---------PNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp EE---------TTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT
T ss_pred Ec---------cccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcc
Confidence 44 233445444333345558888888899999988777788875
No 72
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=91.66 E-value=12 Score=35.40 Aligned_cols=127 Identities=12% Similarity=0.031 Sum_probs=64.5
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.++.+|..+.+-..+...+..........-+..|++....++. .+++.+|..+...+.+..... ..........
T Consensus 215 ~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~----~~i~~~d~~~~~~~~l~~~~~--~~~~~~~s~d 288 (417)
T TIGR02800 215 EIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGN----PDIYVMDLDGKQLTRLTNGPG--IDTEPSWSPD 288 (417)
T ss_pred EEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCC----ccEEEEECCCCCEEECCCCCC--CCCCEEECCC
Confidence 4666777666555554433222222222224456655433222 368999999888777654432 1111122223
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEecc
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS 237 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~ 237 (322)
+.+|++.....+ ...++.+|..+..++++........ .....-+++.+++...
T Consensus 289 g~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~~~~~~~~-~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 289 GKSIAFTSDRGG------SPQIYMMDADGGEVRRLTFRGGYNA-SPSWSPDGDLIAFVHR 341 (417)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCEEEeecCCCCcc-CeEECCCCCEEEEEEc
Confidence 455655443221 2589999999988887753221111 1122335555555443
No 73
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=90.12 E-value=15 Score=34.84 Aligned_cols=103 Identities=8% Similarity=-0.021 Sum_probs=60.3
Q ss_pred CCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC-------CCCCCCcEEEE
Q 020682 154 DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-------PSPRYSPATQL 226 (322)
Q Consensus 154 ~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~-------p~~r~~~~~~~ 226 (322)
.+.|+.+..+. ...--++.++|++|++.- ..+++.+|.+- .=.++.+. ...+.....+.
T Consensus 189 ~~~Wt~l~~~~----~~~~DIi~~kGkfYAvD~---------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVE 254 (373)
T PLN03215 189 GNVLKALKQMG----YHFSDIIVHKGQTYALDS---------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVE 254 (373)
T ss_pred CCeeeEccCCC----ceeeEEEEECCEEEEEcC---------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEE
Confidence 48999986433 345678889999999832 25566666421 11222211 11112334667
Q ss_pred ECCEEEEEeccCCCCCC-------CCcceEeeeeeccccccCceEeccCCC
Q 020682 227 WRGRLHVMGGSKENRHT-------PGLEHWSIAVKDGKALEKAWRTEIPIP 270 (322)
Q Consensus 227 ~~~~Lyv~GG~~~~~~~-------~~~~~~~~~v~~~~~~~~~W~~~~~~p 270 (322)
..|+|+++......... .......++||..|.+..+|.++..+.
T Consensus 255 s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 255 CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 78999999875321100 011234566777778889999987654
No 74
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.47 E-value=4.3 Score=36.30 Aligned_cols=143 Identities=17% Similarity=0.245 Sum_probs=78.2
Q ss_pred CCEEEEEeecCCCCCCcceeEEEECC-----CCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEE
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNFT-----DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~-----~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~y 202 (322)
++++|++.|..+. .++.|.-. .+.....-.+|. +-.+.+.++.++.+|---. . .+.+..|
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~--~~~GtG~vVYngslYY~~~----~----s~~Ivky 94 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPY--PWQGTGHVVYNGSLYYNKY----N----SRNIVKY 94 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEec--eeccCCeEEECCcEEEEec----C----CceEEEE
Confidence 5789999886544 35555332 223333334444 4567778888888887433 1 5899999
Q ss_pred eCCCCcEE---EcCCC------CCCCC---CcEEEEECCEEEEEeccCCC---CCCCCcceEeeeeeccccccCceEecc
Q 020682 203 DSETRKWD---SIPPL------PSPRY---SPATQLWRGRLHVMGGSKEN---RHTPGLEHWSIAVKDGKALEKAWRTEI 267 (322)
Q Consensus 203 d~~t~~W~---~~~~~------p~~r~---~~~~~~~~~~Lyv~GG~~~~---~~~~~~~~~~~~v~~~~~~~~~W~~~~ 267 (322)
|+.+..=. .++.. |-... ..-.++..+-|+|+=..... .....++.-+++ ....|...
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~------v~~tw~T~- 167 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLS------VEQTWNTS- 167 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCc------eEEEEEec-
Confidence 99988744 44421 11111 12234555557777433221 111112111221 15667653
Q ss_pred CCCCCcCceeEEEECCEEEEEecCCCC
Q 020682 268 PIPRGGPHRACFVFNDRLFVVGGQEGD 294 (322)
Q Consensus 268 ~~p~~~~~~~~~~~~~~lyv~GG~~~~ 294 (322)
.++...+ .+.++-|.||++...+..
T Consensus 168 -~~k~~~~-naFmvCGvLY~~~s~~~~ 192 (250)
T PF02191_consen 168 -YPKRSAG-NAFMVCGVLYATDSYDTR 192 (250)
T ss_pred -cCchhhc-ceeeEeeEEEEEEECCCC
Confidence 4544444 466777899999887643
No 75
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.25 E-value=4.4 Score=36.41 Aligned_cols=99 Identities=19% Similarity=0.182 Sum_probs=69.8
Q ss_pred EEEE-ECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEE
Q 020682 123 AAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV 201 (322)
Q Consensus 123 ~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~ 201 (322)
++.. .++.+|.--|..+. +.+.+||+++.+-....++|. .-.+=++++.+++||..-=. ....+.
T Consensus 49 GL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~--~~FgEGit~~~d~l~qLTWk--------~~~~f~ 114 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPP--RYFGEGITILGDKLYQLTWK--------EGTGFV 114 (264)
T ss_dssp EEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TT--T--EEEEEEETTEEEEEESS--------SSEEEE
T ss_pred cEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCc--cccceeEEEECCEEEEEEec--------CCeEEE
Confidence 4444 57899998886543 468899999988777677776 56788899999999998642 478899
Q ss_pred EeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEecc
Q 020682 202 LDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS 237 (322)
Q Consensus 202 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~ 237 (322)
||..+- +.+...+.+..+-+++..+..|++--|.
T Consensus 115 yd~~tl--~~~~~~~y~~EGWGLt~dg~~Li~SDGS 148 (264)
T PF05096_consen 115 YDPNTL--KKIGTFPYPGEGWGLTSDGKRLIMSDGS 148 (264)
T ss_dssp EETTTT--EEEEEEE-SSS--EEEECSSCEEEE-SS
T ss_pred Eccccc--eEEEEEecCCcceEEEcCCCEEEEECCc
Confidence 999863 5555555566778888777788888775
No 76
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=89.19 E-value=16 Score=32.77 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=76.6
Q ss_pred ccEEEEECCEEEEEeecCCCCCCcc-eeEEEECC----CCce-EECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCC
Q 020682 121 DGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFT----DNKW-VDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRG 194 (322)
Q Consensus 121 ~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~----~~~W-~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~ 194 (322)
-|+.+.+++.-|.+|=.++.-..+. -+..|... ...- +.++.--.+ .-+-.++-..++++|+.--......
T Consensus 138 ~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~-~AsEPCvkyY~g~LyLtTRgt~~~~-- 214 (367)
T PF12217_consen 138 LHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYER-NASEPCVKYYDGVLYLTTRGTLPTN-- 214 (367)
T ss_dssp EEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-T-TEEEEEEEEETTEEEEEEEES-TTS--
T ss_pred eeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhhcc-ccccchhhhhCCEEEEEEcCcCCCC--
Confidence 5788889988888885544332221 12222111 1111 222211111 3345566668999999864333322
Q ss_pred CCceEEEEeCCCCcEEEcCC-CCCCCCCcEEEEECCEEEEEeccCC----------CCCC---CCcceEeeeeecccccc
Q 020682 195 PTSRTFVLDSETRKWDSIPP-LPSPRYSPATQLWRGRLHVMGGSKE----------NRHT---PGLEHWSIAVKDGKALE 260 (322)
Q Consensus 195 ~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~Lyv~GG~~~----------~~~~---~~~~~~~~~v~~~~~~~ 260 (322)
+-+.+.+=+..-..|+.+.- -..-....-.+..++.||+||-... .++. +....-.+.+-+++++.
T Consensus 215 ~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~ 294 (367)
T PF12217_consen 215 PGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDD 294 (367)
T ss_dssp ---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT
T ss_pred CcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccc
Confidence 13777788877888998742 1222333445678999999996421 1111 11222233455566778
Q ss_pred CceEeccC------CCCCcCce-eEEEECCEEE-EEecCC
Q 020682 261 KAWRTEIP------IPRGGPHR-ACFVFNDRLF-VVGGQE 292 (322)
Q Consensus 261 ~~W~~~~~------~p~~~~~~-~~~~~~~~ly-v~GG~~ 292 (322)
-+|..+.. +.....+. ++|+-++-|| +|||.+
T Consensus 295 ~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 295 VEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp ---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred eEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 88877643 22233333 4456677765 788855
No 77
>PRK04792 tolB translocation protein TolB; Provisional
Probab=88.99 E-value=23 Score=34.37 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=39.1
Q ss_pred ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 214 (322)
..++++|+.+.+-+.+...+. .-......-.+.+|++....++ ..+++.+|..+++.+++..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPG--INGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCCC--CcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECcc
Confidence 469999998877666655543 1122222223556766543322 3689999999999888764
No 78
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=88.43 E-value=15 Score=31.30 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=48.7
Q ss_pred EEEECCEEEEEeecCCCCCCcceeEEEECCCCce--EECCCC-CCCCCCceeEEEEeC-CEEEEEecccCCCCCCCCceE
Q 020682 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW--VDRFDM-PKDMAHSHLGVVSDG-RYIYIVSGQYGPQCRGPTSRT 199 (322)
Q Consensus 124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~-~~p~~r~~~~~~~~~-~~Iyv~GG~~~~~~~~~~~~v 199 (322)
+....+++|+|-| +.+|+++...... ..+... +..+....++....+ +++|+|-| +..
T Consensus 12 ~~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg----------~~y 73 (194)
T cd00094 12 VTTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG----------DKY 73 (194)
T ss_pred EEEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC----------CEE
Confidence 3445699999988 3578887652211 112111 110022333333223 89999977 567
Q ss_pred EEEeCCCCcEE---EcC--CCCC-CCCCcEEEEE--CCEEEEEecc
Q 020682 200 FVLDSETRKWD---SIP--PLPS-PRYSPATQLW--RGRLHVMGGS 237 (322)
Q Consensus 200 ~~yd~~t~~W~---~~~--~~p~-~r~~~~~~~~--~~~Lyv~GG~ 237 (322)
++||..+..+. .+. .+|. +..--++..+ ++++|+|.|.
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~ 119 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD 119 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC
Confidence 77876642221 111 1111 1111233344 5789999884
No 79
>PRK01742 tolB translocation protein TolB; Provisional
Probab=88.22 E-value=25 Score=33.81 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=56.2
Q ss_pred eeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEE
Q 020682 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ 225 (322)
Q Consensus 146 ~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 225 (322)
++|.+|..+...+.+..... .-........+.+|+......+ ...++.+|..+..-+.+.. .... ...
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~~--~~~~~~wSpDG~~i~f~s~~~g------~~~I~~~~~~~~~~~~l~~---~~~~-~~~ 340 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGAG--NNTEPSWSPDGQSILFTSDRSG------SPQVYRMSASGGGASLVGG---RGYS-AQI 340 (429)
T ss_pred EEEEEECCCCCeEeeccCCC--CcCCEEECCCCCEEEEEECCCC------CceEEEEECCCCCeEEecC---CCCC-ccC
Confidence 58899998877766654322 1111222222445555443222 2577778776654444321 1111 122
Q ss_pred EECCE-EEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC
Q 020682 226 LWRGR-LHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD 294 (322)
Q Consensus 226 ~~~~~-Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~ 294 (322)
.-+|+ |++.++ ..+..|++ .+..++.+..-.. ... ....-+++++++++.++.
T Consensus 341 SpDG~~ia~~~~-------~~i~~~Dl-------~~g~~~~lt~~~~-~~~-~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 341 SADGKTLVMING-------DNVVKQDL-------TSGSTEVLSSTFL-DES-PSISPNGIMIIYSSTQGL 394 (429)
T ss_pred CCCCCEEEEEcC-------CCEEEEEC-------CCCCeEEecCCCC-CCC-ceECCCCCEEEEEEcCCC
Confidence 22444 544433 12444543 3666665432111 111 223446777777665543
No 80
>PRK02889 tolB translocation protein TolB; Provisional
Probab=88.18 E-value=26 Score=33.79 Aligned_cols=104 Identities=11% Similarity=-0.019 Sum_probs=51.4
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.++.+|..+.+=..+...+..........-+++|++....++. .++|.+|..+...+++..... ........-.
T Consensus 221 ~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~----~~Iy~~d~~~~~~~~lt~~~~--~~~~~~wSpD 294 (427)
T PRK02889 221 VVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGN----SQIYTVNADGSGLRRLTQSSG--IDTEPFFSPD 294 (427)
T ss_pred EEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCC----ceEEEEECCCCCcEECCCCCC--CCcCeEEcCC
Confidence 3566666555444443333111111111224456554443322 468999988777666644221 1122222223
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 213 (322)
+.+|+......+ ...++.+|..+...+++.
T Consensus 295 G~~l~f~s~~~g------~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 295 GRSIYFTSDRGG------APQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCEEEEEecCCC------CcEEEEEECCCCceEEEe
Confidence 455655432211 257888898887777764
No 81
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=86.06 E-value=11 Score=29.66 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=55.2
Q ss_pred EECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCC-CCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEE-e
Q 020682 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL-D 203 (322)
Q Consensus 126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~y-d 203 (322)
.++|-+|-.+-. .......+..||.++++|+.+..+ ...........+.++|+|-++.-..... ...-++|++ |
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD 78 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED 78 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence 457788877765 222234689999999999886543 1112456677788899998876543322 113678887 4
Q ss_pred CCCCcEEEcC
Q 020682 204 SETRKWDSIP 213 (322)
Q Consensus 204 ~~t~~W~~~~ 213 (322)
.++.+|.+..
T Consensus 79 ~~k~~Wsk~~ 88 (129)
T PF08268_consen 79 YEKQEWSKKH 88 (129)
T ss_pred cccceEEEEE
Confidence 6677899763
No 82
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=85.94 E-value=24 Score=31.07 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=36.7
Q ss_pred EEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~ 207 (322)
.+|+.++.+ ..+.+||+.+.+-........ .++ +++.. ++.+|+.++. ...+..||..+.
T Consensus 2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~-~~~---~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~ 63 (300)
T TIGR03866 2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQ-RPR---GITLSKDGKLLYVCASD--------SDTIQVIDLATG 63 (300)
T ss_pred cEEEEecCC------CEEEEEECCCCceEEEEECCC-CCC---ceEECCCCCEEEEEECC--------CCeEEEEECCCC
Confidence 567776643 258888988765433222211 022 23332 4467777653 257888999887
Q ss_pred cEEE
Q 020682 208 KWDS 211 (322)
Q Consensus 208 ~W~~ 211 (322)
+...
T Consensus 64 ~~~~ 67 (300)
T TIGR03866 64 EVIG 67 (300)
T ss_pred cEEE
Confidence 7654
No 83
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.44 E-value=19 Score=31.50 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=88.3
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC---CCCCcee
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHSHL 172 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---p~~r~~~ 172 (322)
.++.+++.+.+-..+. .+. -.+++.. ++++|+.... ...++|+.+.+++.+...+. +..+.+-
T Consensus 23 ~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND 90 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRPND 90 (246)
T ss_dssp EEEEEETTTTEEEEEE-SSS---EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEEEE
T ss_pred EEEEEECCCCeEEEEe-cCC---CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCCce
Confidence 5667777666443321 122 2233333 6888888652 35667999999988766531 2234444
Q ss_pred EEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC-CCCCCCCCcEEEEE-CC-EEEEEeccCCCCCCCCcceE
Q 020682 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLW-RG-RLHVMGGSKENRHTPGLEHW 249 (322)
Q Consensus 173 ~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~-~~-~Lyv~GG~~~~~~~~~~~~~ 249 (322)
.++--++.||+-.-............++++++. .+...+. .+..+ -.++.- ++ .||+.--. ...+..|
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~-----~~~i~~~ 161 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADSF-----NGRIWRF 161 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEETT-----TTEEEEE
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeecccc-----cceeEEE
Confidence 444447888885432222111101679999999 6666553 22222 133332 34 57774222 2235555
Q ss_pred eeeeeccccccCceEe---ccCCCCCc-CceeEEE-ECCEEEEEec-CCCCCCCCCCCCeee
Q 020682 250 SIAVKDGKALEKAWRT---EIPIPRGG-PHRACFV-FNDRLFVVGG-QEGDFMAKPGSPIFK 305 (322)
Q Consensus 250 ~~~v~~~~~~~~~W~~---~~~~p~~~-~~~~~~~-~~~~lyv~GG-~~~~~~~~p~~~~~~ 305 (322)
+++ .....+.. +..++... .-.++++ -++.||+..- .....+++|.-....
T Consensus 162 ~~~-----~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 162 DLD-----ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLR 218 (246)
T ss_dssp EEE-----TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEE
T ss_pred ecc-----ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEE
Confidence 543 22333332 22223221 1123333 3678888743 233445666654433
No 84
>PRK05137 tolB translocation protein TolB; Provisional
Probab=85.43 E-value=36 Score=32.77 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=59.1
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.++.+|..+.+.+.+...+..-.......-+.+|++....++. .++|++|.++..-+++...+. .-........
T Consensus 227 ~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~----~~Iy~~d~~~~~~~~Lt~~~~--~~~~~~~spD 300 (435)
T PRK05137 227 RVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGN----TDIYTMDLRSGTTTRLTDSPA--IDTSPSYSPD 300 (435)
T ss_pred EEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCC----ceEEEEECCCCceEEccCCCC--ccCceeEcCC
Confidence 5677777777777766554332233333335556554443322 469999999888777655432 1111222223
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 214 (322)
+.+|+......+ ...++.+|..+...+++..
T Consensus 301 G~~i~f~s~~~g------~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 301 GSQIVFESDRSG------SPQLYVMNADGSNPRRISF 331 (435)
T ss_pred CCEEEEEECCCC------CCeEEEEECCCCCeEEeec
Confidence 445554332111 2578999998888777753
No 85
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.68 E-value=25 Score=35.01 Aligned_cols=95 Identities=19% Similarity=0.327 Sum_probs=55.1
Q ss_pred EEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCCCC-C-----CceeEEEEeCCEEEEEecccCCCCCCC
Q 020682 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDM-A-----HSHLGVVSDGRYIYIVSGQYGPQCRGP 195 (322)
Q Consensus 124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~p~-~-----r~~~~~~~~~~~Iyv~GG~~~~~~~~~ 195 (322)
-++.++.||+.... ..++.+|.++- .|+.-...+... + ....+.++.+++||+...
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--------- 128 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--------- 128 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---------
Confidence 35668999996542 24888888754 487643322100 0 112345677888887432
Q ss_pred CceEEEEeCCCCc--EEEcC-CCCCC-CCCcEEEEECCEEEEE
Q 020682 196 TSRTFVLDSETRK--WDSIP-PLPSP-RYSPATQLWRGRLHVM 234 (322)
Q Consensus 196 ~~~v~~yd~~t~~--W~~~~-~~p~~-r~~~~~~~~~~~Lyv~ 234 (322)
-..+..+|.+|.+ |+.-. ..... ....+-++.+++||+-
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEe
Confidence 2678999998876 77542 22111 1222345678887764
No 86
>PRK05137 tolB translocation protein TolB; Provisional
Probab=84.67 E-value=39 Score=32.53 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=39.5
Q ss_pred ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC
Q 020682 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (322)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 215 (322)
..++++|+.+.+.+.+...+. .-......-.+.+|++....++ ..+++.+|..+..-.++...
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~ 288 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG--MTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDS 288 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC--cccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCC
Confidence 469999999888877765543 1122222223456655443222 36899999999888777543
No 87
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=83.99 E-value=25 Score=29.81 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=49.4
Q ss_pred CEEEEEeecCCCCCCcceeEEEECCCCceE---ECCCCCCCC--CCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEE
Q 020682 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWV---DRFDMPKDM--AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVL 202 (322)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~---~~~~~~~p~--~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~y 202 (322)
+++|+|-| +..|+||..+..+. .+.....|. ....++.... ++++|+|.| +..+.|
T Consensus 63 ~~~yfFkg--------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg----------~~y~ry 124 (194)
T cd00094 63 GKIYFFKG--------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG----------DKYWRY 124 (194)
T ss_pred CEEEEECC--------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC----------CEEEEE
Confidence 89999987 46888887642221 111111110 2222233222 689999987 677888
Q ss_pred eCCCCcEEEc---------CCCCCCCCCcEEEEEC-CEEEEEecc
Q 020682 203 DSETRKWDSI---------PPLPSPRYSPATQLWR-GRLHVMGGS 237 (322)
Q Consensus 203 d~~t~~W~~~---------~~~p~~r~~~~~~~~~-~~Lyv~GG~ 237 (322)
|..+++-.+- +.+|. .-.++..++ +++|+|-|.
T Consensus 125 ~~~~~~v~~~yP~~i~~~w~g~p~--~idaa~~~~~~~~yfF~g~ 167 (194)
T cd00094 125 DEKTQKMDPGYPKLIETDFPGVPD--KVDAAFRWLDGYYYFFKGD 167 (194)
T ss_pred eCCCccccCCCCcchhhcCCCcCC--CcceeEEeCCCcEEEEECC
Confidence 8766554211 11222 223444455 889999774
No 88
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=82.92 E-value=34 Score=30.49 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=78.5
Q ss_pred CCCCEEECCCC-----CCCCcccEEE-EECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-
Q 020682 105 PDLEWEQMPSA-----PVPRLDGAAI-QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD- 177 (322)
Q Consensus 105 ~~~~W~~~~~~-----p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~- 177 (322)
....|+...|| ++|-.+.... .-.+.|+..||. ..++..|.++.+-++.-.-. .-+-|+++.-
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~ 166 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRN 166 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCC---cceeeeeeecc
Confidence 34467766665 3444443333 346888888873 25788899988876643222 2344555542
Q ss_pred -CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEc-C-----CCCCCCCCc-EEEE-ECCEEEEEeccCCCCCCCCcce
Q 020682 178 -GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI-P-----PLPSPRYSP-ATQL-WRGRLHVMGGSKENRHTPGLEH 248 (322)
Q Consensus 178 -~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~-~-----~~p~~r~~~-~~~~-~~~~Lyv~GG~~~~~~~~~~~~ 248 (322)
++.|+ -|++++ .+-.+|.+|.+=..+ . .+-.|..+- .+++ .+..-.|.||- +.+..
T Consensus 167 ~~~qil-sG~EDG--------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lsl 231 (325)
T KOG0649|consen 167 ANGQIL-SGAEDG--------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSL 231 (325)
T ss_pred cCccee-ecCCCc--------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeE
Confidence 33333 455543 455788888775554 1 111121221 2333 33334555552 23556
Q ss_pred EeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEec
Q 020682 249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG 290 (322)
Q Consensus 249 ~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG 290 (322)
|.+- ..+=+.+-|+|..-. -+...+ +.+++||
T Consensus 232 whLr-------sse~t~vfpipa~v~--~v~F~~-d~vl~~G 263 (325)
T KOG0649|consen 232 WHLR-------SSESTCVFPIPARVH--LVDFVD-DCVLIGG 263 (325)
T ss_pred Eecc-------CCCceEEEeccccee--Eeeeec-ceEEEec
Confidence 6653 555566667775554 333444 4445555
No 89
>PRK00178 tolB translocation protein TolB; Provisional
Probab=81.70 E-value=50 Score=31.58 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=37.8
Q ss_pred ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 214 (322)
..++++|+.+.+-+.+...+. .-......-.+++|++....++ ..+++.+|.++...+++..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g--~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG--LNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC--CcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEccc
Confidence 369999999888777655442 1111111123455655432211 2689999999999888764
No 90
>PRK04922 tolB translocation protein TolB; Provisional
Probab=81.45 E-value=53 Score=31.64 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=38.0
Q ss_pred ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 214 (322)
..++++|..+.+-+.+...+. .-........+++|++....++ ..+++.+|+.+++-+++..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g--~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG--INGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC--CccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECcc
Confidence 468999998888777665543 1112222223556665443222 2689999999988777654
No 91
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=80.98 E-value=51 Score=31.17 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=37.2
Q ss_pred ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC
Q 020682 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (322)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 215 (322)
..++++|..+.+-..+..... .....+....+..|++.....+ ..+++.+|..++..+.+...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~--~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG--MNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCCC
Confidence 368999998876666554432 1222222222445665543221 36799999999888877543
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=80.09 E-value=18 Score=34.87 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEE-EEeCCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~-~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t 206 (322)
|....+++|.. .=++.||.++.+-+++.++-.-..++-... +..++.+.++-|. ...++.+...|
T Consensus 269 G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~--------~G~I~lLhakT 334 (514)
T KOG2055|consen 269 GHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN--------NGHIHLLHAKT 334 (514)
T ss_pred CceEEEecccc------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc--------CceEEeehhhh
Confidence 44466666632 237889999988888766543112222222 2334445555554 35677788888
Q ss_pred CcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeee
Q 020682 207 RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA 252 (322)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~ 252 (322)
++|-.--.++..........-+..|++.||... ++.|++.
T Consensus 335 ~eli~s~KieG~v~~~~fsSdsk~l~~~~~~Ge------V~v~nl~ 374 (514)
T KOG2055|consen 335 KELITSFKIEGVVSDFTFSSDSKELLASGGTGE------VYVWNLR 374 (514)
T ss_pred hhhhheeeeccEEeeEEEecCCcEEEEEcCCce------EEEEecC
Confidence 887543333322222222233345888888643 7777764
No 93
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=79.87 E-value=46 Score=29.99 Aligned_cols=162 Identities=11% Similarity=0.072 Sum_probs=73.9
Q ss_pred ccEEEEECCEEEEEeec-CCCCCCcceeEEEE---CCCCceEE--CCCCCC-----CCCCceeEEEEeCCEEEEEecccC
Q 020682 121 DGAAIQIKNLFYVFAGY-GSLDYVHSHVDVYN---FTDNKWVD--RFDMPK-----DMAHSHLGVVSDGRYIYIVSGQYG 189 (322)
Q Consensus 121 ~~~~~~~~~~lyv~GG~-~~~~~~~~~v~~yd---~~~~~W~~--~~~~~~-----p~~r~~~~~~~~~~~Iyv~GG~~~ 189 (322)
++++.+++++||.+=-. .-.+..+...+.|| +..+.|+. +...+. -..-.-|+.|++++.=|.+|=.++
T Consensus 77 CmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnG 156 (367)
T PF12217_consen 77 CMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNG 156 (367)
T ss_dssp -B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-
T ss_pred eeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccC
Confidence 55677899999987543 22222222344454 46788975 222221 013466788888887888886665
Q ss_pred CCCCCCCceEE-EEe-----CCCCcEE-EcC-CCCCCCCCcEEEEECCEEEEEe-ccCCCCCCCCcceEeeeeecccccc
Q 020682 190 PQCRGPTSRTF-VLD-----SETRKWD-SIP-PLPSPRYSPATQLWRGRLHVMG-GSKENRHTPGLEHWSIAVKDGKALE 260 (322)
Q Consensus 190 ~~~~~~~~~v~-~yd-----~~t~~W~-~~~-~~p~~r~~~~~~~~~~~Lyv~G-G~~~~~~~~~~~~~~~~v~~~~~~~ 260 (322)
... ..++- .|- .....=. .++ .....-+.+.+-.++|.||+.- |.........+.+-+. ..
T Consensus 157 D~s---PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d-------~G 226 (367)
T PF12217_consen 157 DVS---PRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDD-------NG 226 (367)
T ss_dssp SSS---S-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESS-------TT
T ss_pred CCC---cceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecc-------cC
Confidence 543 12322 221 1111111 222 2222233444557899999974 5444333344444442 36
Q ss_pred CceEeccCC-CCCcCceeEEEECCEEEEEecCC
Q 020682 261 KAWRTEIPI-PRGGPHRACFVFNDRLFVVGGQE 292 (322)
Q Consensus 261 ~~W~~~~~~-p~~~~~~~~~~~~~~lyv~GG~~ 292 (322)
..|+.+.-. .-.....-.+..++.||+||-..
T Consensus 227 ~~w~slrfp~nvHhtnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 227 QNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp SS-EEEE-TT---SS---EEEETTEEEEEEE-S
T ss_pred CchhhccccccccccCCCceeeCCEEEEEeccc
Confidence 678875321 11222235678899999999743
No 94
>PRK04043 tolB translocation protein TolB; Provisional
Probab=79.51 E-value=61 Score=31.24 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=60.5
Q ss_pred hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.++.+|..+.+=+.+...+..-.......-+.+|.+.-..++ ..++|.+|..+..++++...+. .-......-.
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~--~d~~p~~SPD 287 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPG--IDVNGNFVED 287 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCC--ccCccEECCC
Confidence 567777766655555442211111122222446655544322 2479999999999988865542 1112222234
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 214 (322)
+++||......+ ..+++.+|..+++.+++..
T Consensus 288 G~~I~F~Sdr~g------~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 288 DKRIVFVSDRLG------YPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCeEeCcc
Confidence 567777654321 3689999999999887753
No 95
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=79.44 E-value=9.8 Score=34.99 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=72.2
Q ss_pred ccccccCCC-----CEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCc-eEECCCCCCCCCCcee
Q 020682 99 FADLPAPDL-----EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDRFDMPKDMAHSHL 172 (322)
Q Consensus 99 ~~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~p~~r~~~ 172 (322)
+..|+..+. +.+.+.....+-.-.+++.++++|.+.-| +.+.+|+...++ +...+.+..+ -...
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~--~~i~ 133 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSP--FYIT 133 (321)
T ss_dssp EEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BS--SSEE
T ss_pred EEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecce--EEEE
Confidence 455555553 55555554454456677788999777766 468889988888 8887777653 3566
Q ss_pred EEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE-CCEEEEE
Q 020682 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVM 234 (322)
Q Consensus 173 ~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~Lyv~ 234 (322)
++.+.++.|++---.. .-.+..|+.+..+-..++.-..++.-.++..+ ++..++.
T Consensus 134 sl~~~~~~I~vgD~~~-------sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 134 SLSVFKNYILVGDAMK-------SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp EEEEETTEEEEEESSS-------SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred EEeccccEEEEEEccc-------CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence 7777788777532211 24555778866667777654456665566555 5553333
No 96
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=79.11 E-value=80 Score=32.65 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=61.1
Q ss_pred CCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCC-CCCCcEEEEECCEEEEEeccCCCCC
Q 020682 165 KDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRH 242 (322)
Q Consensus 165 ~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~Lyv~GG~~~~~~ 242 (322)
.|.|+...++++. .|.|.++|+++ .-++++++.+|++=..+=.... |.++- +....+.+.+-|-.
T Consensus 432 ~P~p~QfscvavD~sGelV~AG~~d-------~F~IfvWS~qTGqllDiLsGHEgPVs~l-~f~~~~~~LaS~SW----- 498 (893)
T KOG0291|consen 432 SPEPIQFSCVAVDPSGELVCAGAQD-------SFEIFVWSVQTGQLLDILSGHEGPVSGL-SFSPDGSLLASGSW----- 498 (893)
T ss_pred CCCceeeeEEEEcCCCCEEEeeccc-------eEEEEEEEeecCeeeehhcCCCCcceee-EEccccCeEEeccc-----
Confidence 3534454444444 37788888864 3678899999988666532222 22221 23334444444443
Q ss_pred CCCcceEeeeeeccccccCceEeccCC-----------CCCcCceeEEEECCEEEEEecCCCCCC
Q 020682 243 TPGLEHWSIAVKDGKALEKAWRTEIPI-----------PRGGPHRACFVFNDRLFVVGGQEGDFM 296 (322)
Q Consensus 243 ~~~~~~~~~~v~~~~~~~~~W~~~~~~-----------p~~~~~~~~~~~~~~lyv~GG~~~~~~ 296 (322)
..++..|++- ..|.++.++ ...+-..+++.++|+|=++--.++..+
T Consensus 499 DkTVRiW~if--------~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 499 DKTVRIWDIF--------SSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred cceEEEEEee--------ccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 5567788752 333332221 122333578888999887765544443
No 97
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.68 E-value=54 Score=30.12 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=59.5
Q ss_pred cceeEEEECCCCc----eEECCCCCCCCCCceeEEEE------eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682 144 HSHVDVYNFTDNK----WVDRFDMPKDMAHSHLGVVS------DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 144 ~~~v~~yd~~~~~----W~~~~~~~~p~~r~~~~~~~------~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 213 (322)
++++..||.++++ |.+--.-+ +..++=+. +++.|++.-+ ++... --++..|.++..=+++.
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~----~~WaGEVSdIlYdP~~D~LLlAR~-DGh~n----LGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDK----TKWAGEVSDILYDPYEDRLLLARA-DGHAN----LGVYSLDRRTGKAEKLS 147 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCc----cccccchhheeeCCCcCEEEEEec-CCcce----eeeEEEcccCCceeecc
Confidence 4689999999887 65532222 22222221 2678887644 44332 56889999999988887
Q ss_pred CCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCce
Q 020682 214 PLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAW 263 (322)
Q Consensus 214 ~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W 263 (322)
.-|... .+.+.+...+-+ .+...-.+.+.++|+. +++|
T Consensus 148 ~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~~Dli-------~~~~ 185 (339)
T PF09910_consen 148 SNPSLK---GTLVHDYACFGI--NNFHKGVSGIHCLDLI-------SGKW 185 (339)
T ss_pred CCCCcC---ceEeeeeEEEec--cccccCCceEEEEEcc-------CCeE
Confidence 666652 233444444433 3333335667888865 8888
No 98
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=77.73 E-value=53 Score=31.91 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=64.7
Q ss_pred EECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEe
Q 020682 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLD 203 (322)
Q Consensus 126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd 203 (322)
..++.|.+-||+++ .+-.||+.+.+ ..+..+.+..|-. .++.+ +..|..+|| +.+-++|
T Consensus 163 ~~~~hivvtGsYDg------~vrl~DtR~~~-~~v~elnhg~pVe--~vl~lpsgs~iasAgG----------n~vkVWD 223 (487)
T KOG0310|consen 163 PANDHIVVTGSYDG------KVRLWDTRSLT-SRVVELNHGCPVE--SVLALPSGSLIASAGG----------NSVKVWD 223 (487)
T ss_pred cCCCeEEEecCCCc------eEEEEEeccCC-ceeEEecCCCcee--eEEEcCCCCEEEEcCC----------CeEEEEE
Confidence 34677888888763 46668888774 3333343321212 22333 355666666 6666777
Q ss_pred CCCCcEEEcCCCCCCCCCc-EE----EEE-CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccC--CCCCcCc
Q 020682 204 SETRKWDSIPPLPSPRYSP-AT----QLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP--IPRGGPH 275 (322)
Q Consensus 204 ~~t~~W~~~~~~p~~r~~~-~~----~~~-~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~--~p~~~~~ 275 (322)
..++.= ++..+..| .. ... ++.=.+-||.++. +..|+ +..|..+.. +|.+-..
T Consensus 224 l~~G~q-----ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-----VKVfd---------~t~~Kvv~s~~~~~pvLs 284 (487)
T KOG0310|consen 224 LTTGGQ-----LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-----VKVFD---------TTNYKVVHSWKYPGPVLS 284 (487)
T ss_pred ecCCce-----ehhhhhcccceEEEEEeecCCceEeecccccc-----eEEEE---------ccceEEEEeeecccceee
Confidence 764431 22222211 11 111 2233445555432 45555 233444332 2322332
Q ss_pred eeEEEECCEEEEEecCCCCCC
Q 020682 276 RACFVFNDRLFVVGGQEGDFM 296 (322)
Q Consensus 276 ~~~~~~~~~lyv~GG~~~~~~ 296 (322)
..+.-+|+-.++|+.+|...
T Consensus 285 -iavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 285 -IAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred -EEecCCCceEEEecccceee
Confidence 22334788888888877643
No 99
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=77.48 E-value=33 Score=29.96 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=51.8
Q ss_pred CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~ 205 (322)
++.||+.-- ....++++|+.+.+-+.. ..+. ..++++. ++.+|+... ..+..+|+.
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~~~~~-~~~~-----~~G~~~~~~~g~l~v~~~----------~~~~~~d~~ 68 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGEVEVI-DLPG-----PNGMAFDRPDGRLYVADS----------GGIAVVDPD 68 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTEEEEE-ESSS-----EEEEEEECTTSEEEEEET----------TCEEEEETT
T ss_pred CCEEEEEEc------CCCEEEEEECCCCeEEEE-ecCC-----CceEEEEccCCEEEEEEc----------CceEEEecC
Confidence 567777732 124699999998775542 2221 2344444 788888764 344567999
Q ss_pred CCcEEEcCCCC-----CCCCCcEEEEECCEEEEE
Q 020682 206 TRKWDSIPPLP-----SPRYSPATQLWRGRLHVM 234 (322)
Q Consensus 206 t~~W~~~~~~p-----~~r~~~~~~~~~~~Lyv~ 234 (322)
+.+++.+...+ ..+..-.++.-+|.||+-
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t 102 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVT 102 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEE
Confidence 99999886542 223333444557788875
No 100
>PRK13684 Ycf48-like protein; Provisional
Probab=76.30 E-value=66 Score=29.90 Aligned_cols=112 Identities=10% Similarity=0.143 Sum_probs=57.6
Q ss_pred CCEEECCCC-CCCCcccEEEEEC-CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEE
Q 020682 107 LEWEQMPSA-PVPRLDGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIV 184 (322)
Q Consensus 107 ~~W~~~~~~-p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~ 184 (322)
.+|+.+... ..+.....+..++ +.+|+.|.. ..+++=+-.-++|+.+..... -....+....+..|++
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~---g~~~~i~~~~~g~~v~ 188 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDAA---GVVRNLRRSPDGKYVA 188 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCCc---ceEEEEEECCCCeEEE
Confidence 488887532 2222323333343 445655532 235554545678998765432 2344555554445555
Q ss_pred ecccCCCCCCCCceEEE-EeCCCCcEEEcCCCCCCCCCcEEEE-ECCEEEEEecc
Q 020682 185 SGQYGPQCRGPTSRTFV-LDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGS 237 (322)
Q Consensus 185 GG~~~~~~~~~~~~v~~-yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~Lyv~GG~ 237 (322)
.|..+ .++. .|....+|+.+.. +..+.-..+.. -+++++++|..
T Consensus 189 ~g~~G--------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 189 VSSRG--------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred EeCCc--------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecC
Confidence 44332 2222 3445567999864 33344344443 46778888653
No 101
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=76.05 E-value=65 Score=29.67 Aligned_cols=174 Identities=15% Similarity=0.210 Sum_probs=74.3
Q ss_pred CCCEEECCCCCCCCcccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC-CCCCceeEEEEeCCEEEE
Q 020682 106 DLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVSDGRYIYI 183 (322)
Q Consensus 106 ~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~Iyv 183 (322)
...|+.+. +|....-..+... .+.-|++|-. ..+++=+=.-++|+.+..... +......++...++..|+
T Consensus 5 ~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~i 76 (302)
T PF14870_consen 5 GNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWI 76 (302)
T ss_dssp S--EEEEE--S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEE
T ss_pred CCCcEEee-cCCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEE
Confidence 46788886 3444333444434 4778888753 123322223467988653322 111233345556888999
Q ss_pred EecccCCCCCCCCceEEEEeCCCCcEEEcC-CCCCCCCCcEEE-EECCEEEEEeccCCCCCCCCcceEeeeeeccccccC
Q 020682 184 VSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK 261 (322)
Q Consensus 184 ~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~ 261 (322)
+|.. .-+..-.-.-.+|++++ +.+.+.....+. .-++.++++|.. +. +|.....-.
T Consensus 77 vG~~---------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-G~------------iy~T~DgG~ 134 (302)
T PF14870_consen 77 VGEP---------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-GA------------IYRTTDGGK 134 (302)
T ss_dssp EEET---------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------------EEEESSTTS
T ss_pred EcCC---------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-Cc------------EEEeCCCCC
Confidence 8741 33444444567899986 223333333333 345566666543 11 222223467
Q ss_pred ceEeccCCCCCcCceeEEEECCEEEEEecCCCCCC--CCCCCCeeeeeEee
Q 020682 262 AWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFM--AKPGSPIFKCSRRH 310 (322)
Q Consensus 262 ~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~--~~p~~~~~~~~~~~ 310 (322)
.|+.+..-..+... .+....+.-||.-+..|.++ .+|....+....|.
T Consensus 135 tW~~~~~~~~gs~~-~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~ 184 (302)
T PF14870_consen 135 TWQAVVSETSGSIN-DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN 184 (302)
T ss_dssp SEEEEE-S----EE-EEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--
T ss_pred CeeEcccCCcceeE-eEEECCCCcEEEEECcccEEEEecCCCccceEEccC
Confidence 89886553433332 33444444455555666654 46777666665553
No 102
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=75.42 E-value=56 Score=28.60 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=35.3
Q ss_pred CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~ 205 (322)
+..+|+.++.+ ..+.+||..+.+.......... + ..+++. ++.+|+.++. ...+..||+.
T Consensus 42 g~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~g~~l~~~~~~--------~~~l~~~d~~ 103 (300)
T TIGR03866 42 GKLLYVCASDS------DTIQVIDLATGEVIGTLPSGPD-P---ELFALHPNGKILYIANED--------DNLVTVIDIE 103 (300)
T ss_pred CCEEEEEECCC------CeEEEEECCCCcEEEeccCCCC-c---cEEEECCCCCEEEEEcCC--------CCeEEEEECC
Confidence 44677776532 3588899988765442111111 1 123332 4567776542 2568889998
Q ss_pred CCc
Q 020682 206 TRK 208 (322)
Q Consensus 206 t~~ 208 (322)
+.+
T Consensus 104 ~~~ 106 (300)
T TIGR03866 104 TRK 106 (300)
T ss_pred CCe
Confidence 754
No 103
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=74.90 E-value=63 Score=30.04 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=68.5
Q ss_pred cEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCc--eEECCCCCCCCCCceeEEEE--eCCEEEEEecccCCCCCCC
Q 020682 122 GAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGP 195 (322)
Q Consensus 122 ~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~p~~r~~~~~~~--~~~~Iyv~GG~~~~~~~~~ 195 (322)
|.+... ++.+||.-= + .+.+++|+...+. .........|..-.-.-+++ .+..+||+.-.
T Consensus 147 H~v~~~pdg~~v~v~dl----G--~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-------- 212 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDL----G--ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-------- 212 (345)
T ss_dssp EEEEE-TTSSEEEEEET----T--TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT--------
T ss_pred eeEEECCCCCEEEEEec----C--CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC--------
Confidence 444433 456777521 1 2468888887665 54422221110111112333 35689998643
Q ss_pred CceEEEEeCC--CCcEEEc---CCCCCC---C-CCcEEEEE--CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceE
Q 020682 196 TSRTFVLDSE--TRKWDSI---PPLPSP---R-YSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR 264 (322)
Q Consensus 196 ~~~v~~yd~~--t~~W~~~---~~~p~~---r-~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~ 264 (322)
.+.+.+|+.. +..++.+ +.+|.. . ..+.+.+- +..||+.... .+++..|+++ +.++.-+
T Consensus 213 s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d-----~~~g~l~ 282 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLD-----PATGTLT 282 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEEC-----TTTTTEE
T ss_pred CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEe-----cCCCceE
Confidence 2455555544 6666655 344332 2 22233333 3358886432 4446666653 4555666
Q ss_pred eccCCCCCcCceeEEEE--CCEEEEEecCCCC
Q 020682 265 TEIPIPRGGPHRACFVF--NDRLFVVGGQEGD 294 (322)
Q Consensus 265 ~~~~~p~~~~~~~~~~~--~~~lyv~GG~~~~ 294 (322)
.+...+..+..+-.+.+ +++.++++++++.
T Consensus 283 ~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 283 LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp EEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 55444433322222222 4444444444433
No 104
>PRK04043 tolB translocation protein TolB; Provisional
Probab=68.51 E-value=1.2e+02 Score=29.34 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=64.9
Q ss_pred hhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEE
Q 020682 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (322)
Q Consensus 97 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~ 176 (322)
..++.+|....+++++...+..-.......-+.+||......+. .+++++|..+.+.+++..... .......
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~----~~Iy~~dl~~g~~~rlt~~g~----~~~~~SP 328 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGY----PNIFMKKLNSGSVEQVVFHGK----NNSSVST 328 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEeCccCCC----cCceECC
Confidence 36788888888888886654321222333335677776544222 369999999888877654221 2222223
Q ss_pred eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC
Q 020682 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (322)
Q Consensus 177 ~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 215 (322)
.++.|................+++.+|++++.++.+...
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence 355554444322211110136899999999999988653
No 105
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=68.21 E-value=9.7 Score=37.72 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=57.0
Q ss_pred hhhhhhhccccccCCCCEEECCCC------------------CCCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEE
Q 020682 92 ERFLSATFADLPAPDLEWEQMPSA------------------PVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYN 151 (322)
Q Consensus 92 ~~~~~~~~~~yd~~~~~W~~~~~~------------------p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd 151 (322)
.+.+.+.+..|.+..+.|+++.-+ -.|+.+.-++.. .-.||+.|-. ++||++|
T Consensus 89 ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg-------~evYRlN 161 (703)
T KOG2321|consen 89 ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSG-------SEVYRLN 161 (703)
T ss_pred eecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecC-------cceEEEE
Confidence 344555666666666767665433 244444444432 3457776542 4799999
Q ss_pred CCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc
Q 020682 152 FTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (322)
Q Consensus 152 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 208 (322)
.+..+|-.--....+ +-....+...+ -++++||.+ ..|+.+|+.+..
T Consensus 162 LEqGrfL~P~~~~~~-~lN~v~in~~h-gLla~Gt~~--------g~VEfwDpR~ks 208 (703)
T KOG2321|consen 162 LEQGRFLNPFETDSG-ELNVVSINEEH-GLLACGTED--------GVVEFWDPRDKS 208 (703)
T ss_pred ccccccccccccccc-cceeeeecCcc-ceEEecccC--------ceEEEecchhhh
Confidence 999988542222211 22222222233 388888853 677888887654
No 106
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=68.05 E-value=73 Score=26.83 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=32.0
Q ss_pred CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~ 207 (322)
++.++.++.+ ..+.+||..+.+-... +... ...-.++... ++.+++.++. -..+..||+.+.
T Consensus 63 ~~~l~~~~~~------~~i~i~~~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~ 125 (289)
T cd00200 63 GTYLASGSSD------KTIRLWDLETGECVRT--LTGH-TSYVSSVAFSPDGRILSSSSR--------DKTIKVWDVETG 125 (289)
T ss_pred CCEEEEEcCC------CeEEEEEcCcccceEE--Eecc-CCcEEEEEEcCCCCEEEEecC--------CCeEEEEECCCc
Confidence 4455666542 3588888886532221 1111 1122233333 3456666652 257788988754
Q ss_pred c
Q 020682 208 K 208 (322)
Q Consensus 208 ~ 208 (322)
+
T Consensus 126 ~ 126 (289)
T cd00200 126 K 126 (289)
T ss_pred E
Confidence 4
No 107
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=67.39 E-value=1.3e+02 Score=29.53 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=52.2
Q ss_pred EEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCC--CC-CCceeEEEEeC-CEEEEEecccCCCCCCCCc
Q 020682 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPK--DM-AHSHLGVVSDG-RYIYIVSGQYGPQCRGPTS 197 (322)
Q Consensus 124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~--p~-~r~~~~~~~~~-~~Iyv~GG~~~~~~~~~~~ 197 (322)
-++.+++||+.... ..++.+|.++- .|+.-...+. .. +-....+++.+ ++||+... ..
T Consensus 57 Pvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---------~g 120 (488)
T cd00216 57 PLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---------DG 120 (488)
T ss_pred CEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---------CC
Confidence 35669999987542 35888998754 4876433220 00 01112334556 88887432 26
Q ss_pred eEEEEeCCCCc--EEEcCCCCC-C--CCCcEEEEECCEEEE
Q 020682 198 RTFVLDSETRK--WDSIPPLPS-P--RYSPATQLWRGRLHV 233 (322)
Q Consensus 198 ~v~~yd~~t~~--W~~~~~~p~-~--r~~~~~~~~~~~Lyv 233 (322)
.+..+|.+|.+ |+.-...+. . ....+.++.++.+|+
T Consensus 121 ~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v 161 (488)
T cd00216 121 RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII 161 (488)
T ss_pred eEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE
Confidence 78899988765 876533221 0 012233455666664
No 108
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=67.12 E-value=61 Score=32.35 Aligned_cols=95 Identities=19% Similarity=0.296 Sum_probs=50.7
Q ss_pred EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCCCCC--------CCCcEEEEECCEEEEEeccCCCCCC
Q 020682 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSP--------RYSPATQLWRGRLHVMGGSKENRHT 243 (322)
Q Consensus 174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~Lyv~GG~~~~~~~ 243 (322)
-++.++.||+... ...++.+|.+|.+ |+.-...+.. ......++.+++||+... ++
T Consensus 65 Pvv~~g~vyv~s~---------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg---- 130 (527)
T TIGR03075 65 PLVVDGVMYVTTS---------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DA---- 130 (527)
T ss_pred CEEECCEEEEECC---------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-CC----
Confidence 4567899998654 2568899988764 8765432211 112234677888886432 11
Q ss_pred CCcceEeeeeeccccccCceEeccC-CCCC-cCceeEEEECCEEEEE
Q 020682 244 PGLEHWSIAVKDGKALEKAWRTEIP-IPRG-GPHRACFVFNDRLFVV 288 (322)
Q Consensus 244 ~~~~~~~~~v~~~~~~~~~W~~~~~-~p~~-~~~~~~~~~~~~lyv~ 288 (322)
.+..+|.+ ..+..|+.-.. .... ....+-++.+++||+-
T Consensus 131 -~l~ALDa~-----TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 131 -RLVALDAK-----TGKVVWSKKNGDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred -EEEEEECC-----CCCEEeecccccccccccccCCcEEECCEEEEe
Confidence 23333322 34556765322 1111 1112445678877764
No 109
>PRK02889 tolB translocation protein TolB; Provisional
Probab=66.99 E-value=1.2e+02 Score=29.06 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=35.4
Q ss_pred ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 214 (322)
..++++|..+.+=..+...+. .-......-.+++|++....++ ..+++.+|..+...+++..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG--SNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEEccCC------CceEEEEECCCCCcEECCC
Confidence 368999998776555544332 1111111123456665443322 3689999998887777643
No 110
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=66.64 E-value=81 Score=29.02 Aligned_cols=142 Identities=13% Similarity=0.174 Sum_probs=69.9
Q ss_pred eeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC--CCCCCCCCcE
Q 020682 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP--PLPSPRYSPA 223 (322)
Q Consensus 146 ~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~ 223 (322)
.+-.+|+++++=.+++.-..| .|..|-+--.+-.+.+.|-.+ ..+-.+|++..+ ++. .||. |.+ +
T Consensus 95 ~~k~wDL~S~Q~~~v~~Hd~p-vkt~~wv~~~~~~cl~TGSWD--------KTlKfWD~R~~~--pv~t~~LPe-RvY-a 161 (347)
T KOG0647|consen 95 QAKLWDLASGQVSQVAAHDAP-VKTCHWVPGMNYQCLVTGSWD--------KTLKFWDTRSSN--PVATLQLPE-RVY-A 161 (347)
T ss_pred ceEEEEccCCCeeeeeecccc-eeEEEEecCCCcceeEecccc--------cceeecccCCCC--eeeeeeccc-eee-e
Confidence 467789999987777655444 355544333343345555443 334456665333 222 2333 322 2
Q ss_pred EEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCC-CCcCceeEEEECCEEEEEecCCCCC---CCCC
Q 020682 224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIP-RGGPHRACFVFNDRLFVVGGQEGDF---MAKP 299 (322)
Q Consensus 224 ~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p-~~~~~~~~~~~~~~lyv~GG~~~~~---~~~p 299 (322)
+-+... +.|++=. ...+-.|+++ ++.+..=+...|+. +.|+ .++.-+...|.+|+.+|.. ..++
T Consensus 162 ~Dv~~p-m~vVata-----~r~i~vynL~----n~~te~k~~~SpLk~Q~R~--va~f~d~~~~alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 162 ADVLYP-MAVVATA-----ERHIAVYNLE----NPPTEFKRIESPLKWQTRC--VACFQDKDGFALGSIEGRVAIQYIDD 229 (347)
T ss_pred hhccCc-eeEEEec-----CCcEEEEEcC----CCcchhhhhcCcccceeeE--EEEEecCCceEeeeecceEEEEecCC
Confidence 222222 3333211 2235556653 12111111123322 2222 4455677788999988764 2232
Q ss_pred ----CCCeeeeeEeece
Q 020682 300 ----GSPIFKCSRRHEF 312 (322)
Q Consensus 300 ----~~~~~~~~~~~e~ 312 (322)
..-.|+|.|+.+.
T Consensus 230 ~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNS 246 (347)
T ss_pred CCccCceeEEEeccCCC
Confidence 2368899998664
No 111
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=64.19 E-value=79 Score=26.78 Aligned_cols=104 Identities=17% Similarity=0.251 Sum_probs=53.3
Q ss_pred CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t 206 (322)
++++.|+-|... ..+..||.+ ...+..++.. .+ + .+.. -++++.++||..+. ..++..||..
T Consensus 71 g~~favi~g~~~-----~~v~lyd~~---~~~i~~~~~~-~~-n-~i~wsP~G~~l~~~g~~n~-----~G~l~~wd~~- 133 (194)
T PF08662_consen 71 GNEFAVIYGSMP-----AKVTLYDVK---GKKIFSFGTQ-PR-N-TISWSPDGRFLVLAGFGNL-----NGDLEFWDVR- 133 (194)
T ss_pred CCEEEEEEccCC-----cccEEEcCc---ccEeEeecCC-Cc-e-EEEECCCCCEEEEEEccCC-----CcEEEEEECC-
Confidence 677777766321 247888986 3333333331 22 2 2222 26777777876432 2678899988
Q ss_pred CcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccC-CCCCCCCcceEee
Q 020682 207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSK-ENRHTPGLEHWSI 251 (322)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~-~~~~~~~~~~~~~ 251 (322)
+...+.....+. ...+.| +|+.++..... ..+..+....|+.
T Consensus 134 -~~~~i~~~~~~~--~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 134 -KKKKISTFEHSD--ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred -CCEEeeccccCc--EEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 455555443332 223333 56655554432 1223444444543
No 112
>PTZ00421 coronin; Provisional
Probab=62.78 E-value=1.6e+02 Score=29.05 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=34.3
Q ss_pred CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~ 207 (322)
+.+++.||.+ ..+.++|.++.+-.. .+... ...-.+++. .++.+++.|+.+ ..+..||+.+.
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~--~l~~h-~~~V~sla~spdG~lLatgs~D--------g~IrIwD~rsg 200 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVE--VIKCH-SDQITSLEWNLDGSLLCTTSKD--------KKLNIIDPRDG 200 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEE--EEcCC-CCceEEEEEECCCCEEEEecCC--------CEEEEEECCCC
Confidence 3566677653 357888888654321 12110 111122333 256677777643 46778999876
Q ss_pred c
Q 020682 208 K 208 (322)
Q Consensus 208 ~ 208 (322)
+
T Consensus 201 ~ 201 (493)
T PTZ00421 201 T 201 (493)
T ss_pred c
Confidence 5
No 113
>PRK13684 Ycf48-like protein; Provisional
Probab=62.77 E-value=1.3e+02 Score=27.92 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=72.2
Q ss_pred CCCEEECCCCCCCCcccEEEEEC-CEEEEEeecCCCCCCcceeEEEECCCCceEECCC-CCCCCCCceeEEEEeCCEEEE
Q 020682 106 DLEWEQMPSAPVPRLDGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-MPKDMAHSHLGVVSDGRYIYI 183 (322)
Q Consensus 106 ~~~W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~p~~r~~~~~~~~~~~Iyv 183 (322)
...|++.. +|....-..++..+ +..|++|-. ..+++=+=.-++|+.... ++.+ .....++...++..|+
T Consensus 34 ~~~W~~~~-~~~~~~l~~v~F~d~~~g~avG~~-------G~il~T~DgG~tW~~~~~~~~~~-~~~l~~v~~~~~~~~~ 104 (334)
T PRK13684 34 SSPWQVID-LPTEANLLDIAFTDPNHGWLVGSN-------RTLLETNDGGETWEERSLDLPEE-NFRLISISFKGDEGWI 104 (334)
T ss_pred CCCcEEEe-cCCCCceEEEEEeCCCcEEEEECC-------CEEEEEcCCCCCceECccCCccc-ccceeeeEEcCCcEEE
Confidence 35787775 34433344444444 566777632 123322223468998643 2221 1222334444556777
Q ss_pred EecccCCCCCCCCceEEEEeCCCCcEEEcCCC-CCCCCCcEEEEEC-CEEEEEeccCCCCCCCCcceEeeeeeccccccC
Q 020682 184 VSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-PSPRYSPATQLWR-GRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK 261 (322)
Q Consensus 184 ~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~-p~~r~~~~~~~~~-~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~ 261 (322)
.|.. ..++.=+-.-.+|+++... ..+.....+...+ +.+++.|.... ++.-+..-.
T Consensus 105 ~G~~---------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~-------------i~~S~DgG~ 162 (334)
T PRK13684 105 VGQP---------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVGA-------------IYRTTDGGK 162 (334)
T ss_pred eCCC---------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccce-------------EEEECCCCC
Confidence 6521 2333333334589998532 1222222233333 34565544211 111123457
Q ss_pred ceEeccCCCCCcCceeEEEECCEEEEEecCCCCCC
Q 020682 262 AWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFM 296 (322)
Q Consensus 262 ~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~ 296 (322)
.|+.+........ ..+....+..+++.|..|..+
T Consensus 163 tW~~~~~~~~g~~-~~i~~~~~g~~v~~g~~G~i~ 196 (334)
T PRK13684 163 NWEALVEDAAGVV-RNLRRSPDGKYVAVSSRGNFY 196 (334)
T ss_pred CceeCcCCCcceE-EEEEECCCCeEEEEeCCceEE
Confidence 8887654332222 234444445555555454443
No 114
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=62.41 E-value=1.2e+02 Score=27.17 Aligned_cols=128 Identities=15% Similarity=0.130 Sum_probs=73.1
Q ss_pred hhccccccCCCC---EEECCCCC---------CCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCC----CceEEC
Q 020682 97 ATFADLPAPDLE---WEQMPSAP---------VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDR 160 (322)
Q Consensus 97 ~~~~~yd~~~~~---W~~~~~~p---------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~ 160 (322)
..+..||..+.. +..++..- .+-...-+++-.+-|+|+-.......- -.+-+.|+++ .+|..
T Consensus 89 ~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~-ivvskld~~tL~v~~tw~T- 166 (250)
T PF02191_consen 89 RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN-IVVSKLDPETLSVEQTWNT- 166 (250)
T ss_pred ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc-EEEEeeCcccCceEEEEEe-
Confidence 356778877764 33443321 112234455667789998765443321 1245566653 45764
Q ss_pred CCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC-CCCCCCCCcEEEEEC---CEEEEE
Q 020682 161 FDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWR---GRLHVM 234 (322)
Q Consensus 161 ~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~---~~Lyv~ 234 (322)
..+. +....+.++-|.||++...+... ..-.++||+.+++=..+. +++.+-..+++..++ .+||+.
T Consensus 167 -~~~k---~~~~naFmvCGvLY~~~s~~~~~----~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 167 -SYPK---RSAGNAFMVCGVLYATDSYDTRD----TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred -ccCc---hhhcceeeEeeEEEEEEECCCCC----cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEE
Confidence 3443 22333445567899987655433 356688999988766543 344444556666653 568887
No 115
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=62.25 E-value=95 Score=26.10 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=8.7
Q ss_pred ceEEEEeCCCCc
Q 020682 197 SRTFVLDSETRK 208 (322)
Q Consensus 197 ~~v~~yd~~t~~ 208 (322)
..+..||..+.+
T Consensus 199 ~~i~i~d~~~~~ 210 (289)
T cd00200 199 GTIKLWDLSTGK 210 (289)
T ss_pred CcEEEEECCCCc
Confidence 567889987644
No 116
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=60.96 E-value=1.5e+02 Score=28.13 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=54.9
Q ss_pred CCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCC-----CCCCCCCceeEEEEeCCE
Q 020682 106 DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-----MPKDMAHSHLGVVSDGRY 180 (322)
Q Consensus 106 ~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-----~~~p~~r~~~~~~~~~~~ 180 (322)
.+.|+.+.. .....--++..+|++|++.- . .+++.+|.+-. =+++.+ +.....+...-.+...|.
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~---~----G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd 258 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS---I----GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGE 258 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC---C----CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCE
Confidence 367888864 22235566778999999822 1 24666664311 122221 110001122335566788
Q ss_pred EEEEecccCCCC-----------CCCCceEEEEeCCCCcEEEcCCCC
Q 020682 181 IYIVSGQYGPQC-----------RGPTSRTFVLDSETRKWDSIPPLP 216 (322)
Q Consensus 181 Iyv~GG~~~~~~-----------~~~~~~v~~yd~~t~~W~~~~~~p 216 (322)
++++........ ....-.|+..|.+..+|.++..+.
T Consensus 259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 999887532110 001235566788889999998773
No 117
>smart00284 OLF Olfactomedin-like domains.
Probab=60.79 E-value=1.3e+02 Score=27.07 Aligned_cols=128 Identities=12% Similarity=0.053 Sum_probs=69.4
Q ss_pred hhccccccCCCCEEECCCCCCC------------CcccEEEEECCEEEEEeecCCCCCCcceeEEEECCC----CceEEC
Q 020682 97 ATFADLPAPDLEWEQMPSAPVP------------RLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDR 160 (322)
Q Consensus 97 ~~~~~yd~~~~~W~~~~~~p~~------------r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~ 160 (322)
..+.+||..+.+=.....+|.+ -...-+++-.+-|+|+=......... -+-+.||.+ ++|..
T Consensus 94 ~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i-vvSkLnp~tL~ve~tW~T- 171 (255)
T smart00284 94 HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI-VISKLNPATLTIENTWIT- 171 (255)
T ss_pred ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE-EEEeeCcccceEEEEEEc-
Confidence 3577888877765433333321 12344455667788885543332211 244566654 35765
Q ss_pred CCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC-CCCCCCCCcEEEEE---CCEEEEE
Q 020682 161 FDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLW---RGRLHVM 234 (322)
Q Consensus 161 ~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~---~~~Lyv~ 234 (322)
..++ ++...+.++=|.||++-...... ..-.++||+.+++=..+. +++.+...+++.-+ +.+||+.
T Consensus 172 -~~~k---~sa~naFmvCGvLY~~~s~~~~~----~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 172 -TYNK---RSASNAFMICGILYVTRSLGSKG----EKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred -CCCc---ccccccEEEeeEEEEEccCCCCC----cEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEE
Confidence 3333 33334455567799985322111 355788999998744332 34444445556555 4568876
No 118
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=58.38 E-value=1.4e+02 Score=26.78 Aligned_cols=125 Identities=13% Similarity=0.145 Sum_probs=65.0
Q ss_pred CCceEECCCCCC---CCCCceeEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE--
Q 020682 154 DNKWVDRFDMPK---DMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-- 227 (322)
Q Consensus 154 ~~~W~~~~~~~~---p~~r~~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-- 227 (322)
+..|+...|+.. |+|-.+.-... ..+.|+..||- ..+++.|.++++-++.-.-.. -+-|..+.-
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD---------~~~y~~dlE~G~i~r~~rGHt-DYvH~vv~R~~ 167 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD---------GVIYQVDLEDGRIQREYRGHT-DYVHSVVGRNA 167 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC---------eEEEEEEecCCEEEEEEcCCc-ceeeeeeeccc
Confidence 345877776644 44444433333 47889998872 678899999999877643221 233333321
Q ss_pred CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEe-cc-----CCCCCcCc--eeEEEECCEEEEEecCCCCCCCCC
Q 020682 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT-EI-----PIPRGGPH--RACFVFNDRLFVVGGQEGDFMAKP 299 (322)
Q Consensus 228 ~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~-~~-----~~p~~~~~--~~~~~~~~~lyv~GG~~~~~~~~p 299 (322)
+++ .+-|+.++ ++-.||.. +.+-.+ +. ...|+..+ .++...+....+.||--.-...+.
T Consensus 168 ~~q-ilsG~EDG-----tvRvWd~k-------t~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhL 234 (325)
T KOG0649|consen 168 NGQ-ILSGAEDG-----TVRVWDTK-------TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHL 234 (325)
T ss_pred Ccc-eeecCCCc-----cEEEEecc-------ccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEec
Confidence 223 33455544 35566642 333332 21 12232222 245555666666676444444444
Q ss_pred CC
Q 020682 300 GS 301 (322)
Q Consensus 300 ~~ 301 (322)
.+
T Consensus 235 rs 236 (325)
T KOG0649|consen 235 RS 236 (325)
T ss_pred cC
Confidence 33
No 119
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=57.94 E-value=1.9e+02 Score=28.09 Aligned_cols=130 Identities=13% Similarity=0.089 Sum_probs=63.8
Q ss_pred eeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEE
Q 020682 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ 225 (322)
Q Consensus 146 ~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 225 (322)
++|.+|..+++=.++..... .-...+....|.+|+......+ ...+++||++..+=+++..-..... ....
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~g--i~~~Ps~spdG~~ivf~Sdr~G------~p~I~~~~~~g~~~~riT~~~~~~~-~p~~ 333 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFG--INTSPSWSPDGSKIVFTSDRGG------RPQIYLYDLEGSQVTRLTFSGGGNS-NPVW 333 (425)
T ss_pred cEEEEcCCCCcceecccCCc--cccCccCCCCCCEEEEEeCCCC------CcceEEECCCCCceeEeeccCCCCc-CccC
Confidence 69999999877333444432 1122333334566665533322 3589999999887666643222222 3333
Q ss_pred EECCEEEEEeccCCCCCCCCcceEeeeeeccccccCc-eEeccCCCCCcCceeEEEECCEEEEEecCCCC
Q 020682 226 LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA-WRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD 294 (322)
Q Consensus 226 ~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~-W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~ 294 (322)
.-+|+.+++-+..+.. +++.+++ +.++. |+.+..-. ..........+..++.++|..+.
T Consensus 334 SpdG~~i~~~~~~~g~-------~~i~~~~--~~~~~~~~~lt~~~-~~e~ps~~~ng~~i~~~s~~~~~ 393 (425)
T COG0823 334 SPDGDKIVFESSSGGQ-------WDIDKND--LASGGKIRILTSTY-LNESPSWAPNGRMIMFSSGQGGG 393 (425)
T ss_pred CCCCCEEEEEeccCCc-------eeeEEec--cCCCCcEEEccccc-cCCCCCcCCCCceEEEeccCCCC
Confidence 3445544443332111 4433333 43444 77653211 11111334445556666665533
No 120
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=55.92 E-value=1.6e+02 Score=26.77 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=37.9
Q ss_pred CEEEEEeecCCCCCCcceeEEEECCC-CceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682 129 NLFYVFAGYGSLDYVHSHVDVYNFTD-NKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (322)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~ 205 (322)
.++|+..+.+ ..+.+||..+ .+++.+...+. ....+.+++. +..||+.+.. ...+..|+..
T Consensus 2 ~~~y~~~~~~------~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~--------~~~i~~~~~~ 65 (330)
T PRK11028 2 QIVYIASPES------QQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRP--------EFRVLSYRIA 65 (330)
T ss_pred eEEEEEcCCC------CCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECC--------CCcEEEEEEC
Confidence 3577775532 3477788754 46665554433 1122233333 5667875431 2556667665
Q ss_pred -CCcEEEcCCC
Q 020682 206 -TRKWDSIPPL 215 (322)
Q Consensus 206 -t~~W~~~~~~ 215 (322)
+.+++.+...
T Consensus 66 ~~g~l~~~~~~ 76 (330)
T PRK11028 66 DDGALTFAAES 76 (330)
T ss_pred CCCceEEeeee
Confidence 4567655433
No 121
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=51.47 E-value=90 Score=27.32 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=65.8
Q ss_pred ceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcc
Q 020682 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLE 247 (322)
Q Consensus 170 ~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~ 247 (322)
.-.+....+++||.--|..+ .+++.++|..+.+ |++-=+ |..-++-+.+.+++.+|..-=..+. ..
T Consensus 47 fTQGL~~~~g~i~esTG~yg------~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egv-----af 114 (262)
T COG3823 47 FTQGLEYLDGHILESTGLYG------FSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGV-----AF 114 (262)
T ss_pred hhcceeeeCCEEEEeccccc------cceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccce-----eE
Confidence 33456677889999888755 4788999998766 443322 3455677888999999987432221 12
Q ss_pred eEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCCCCCC
Q 020682 248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKP 299 (322)
Q Consensus 248 ~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~p 299 (322)
.|| .+..+.+...+-.+.+.+.+.-+..|++--|..--...+|
T Consensus 115 ~~d---------~~t~~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP 157 (262)
T COG3823 115 KYD---------ADTLEELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDP 157 (262)
T ss_pred EEC---------hHHhhhhcccccCCcceeeecCCcceEeeCCceEEEecCH
Confidence 222 3444555555555555566666666666555433333333
No 122
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=50.75 E-value=1.5e+02 Score=27.48 Aligned_cols=116 Identities=16% Similarity=0.296 Sum_probs=60.2
Q ss_pred CCEEEEEeecCCCCCCcceeEEEECC--CCceEEC---CCCCCCC-CC-ceeEEEEe--CCEEEEEecccCCCCCCCCce
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDR---FDMPKDM-AH-SHLGVVSD--GRYIYIVSGQYGPQCRGPTSR 198 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~---~~~~~p~-~r-~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~ 198 (322)
+..+||..... +.+.+|+.. +..++.+ ..+|... .. ..+.+++. ++.|||.... .+.
T Consensus 203 g~~~Yv~~e~s------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--------~~s 268 (345)
T PF10282_consen 203 GKYAYVVNELS------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--------SNS 268 (345)
T ss_dssp SSEEEEEETTT------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT--------TTE
T ss_pred cCEEEEecCCC------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc--------CCE
Confidence 46899986532 345555444 5555543 3333211 11 34445554 6788986532 366
Q ss_pred EEEEeC--CCCcEEEcCCCCCCCCCcEEEEE--CCE-EEEEeccCCCCCCCCcceEeeeeeccccccCceEecc
Q 020682 199 TFVLDS--ETRKWDSIPPLPSPRYSPATQLW--RGR-LHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI 267 (322)
Q Consensus 199 v~~yd~--~t~~W~~~~~~p~~r~~~~~~~~--~~~-Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~ 267 (322)
+.+|++ .+++-+.+...+..-..+....+ +|+ |||. +.. .+.+..|+++ ++++.++...
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-~~~----s~~v~vf~~d-----~~tG~l~~~~ 332 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-NQD----SNTVSVFDID-----PDTGKLTPVG 332 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE-ETT----TTEEEEEEEE-----TTTTEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE-ecC----CCeEEEEEEe-----CCCCcEEEec
Confidence 666665 55676666544432222333333 444 5554 332 2335566553 7788888764
No 123
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=50.02 E-value=32 Score=20.75 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=17.3
Q ss_pred eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (322)
Q Consensus 172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t 206 (322)
.+.++.++.||+.+. -..++++|++|
T Consensus 15 ~~~~v~~g~vyv~~~---------dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG---------DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T---------TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC---------CCEEEEEeCCC
Confidence 345778999998765 27888998865
No 124
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=48.93 E-value=1.6e+02 Score=24.81 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=34.4
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEee
Q 020682 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (322)
Q Consensus 178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~ 251 (322)
++++.|+-|.. -..+..||.+. ..+..++..........-+|+++++||+... ...++.||.
T Consensus 71 g~~favi~g~~-------~~~v~lyd~~~---~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~ 132 (194)
T PF08662_consen 71 GNEFAVIYGSM-------PAKVTLYDVKG---KKIFSFGTQPRNTISWSPDGRFLVLAGFGNL--NGDLEFWDV 132 (194)
T ss_pred CCEEEEEEccC-------CcccEEEcCcc---cEeEeecCCCceEEEECCCCCEEEEEEccCC--CcEEEEEEC
Confidence 66777775521 14778899863 3333333322222223346788889887532 234677774
No 125
>PRK03629 tolB translocation protein TolB; Provisional
Probab=48.40 E-value=2.6e+02 Score=26.90 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=37.8
Q ss_pred ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC
Q 020682 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (322)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 215 (322)
..++++|..+.+-+.+...+. .-......-.+.+|++.....+ ..+++.+|.++.+.+++...
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~--~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~ 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDG 285 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC--CcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCC
Confidence 368889988877666655543 1111222223556666543221 25799999999988877543
No 126
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=47.86 E-value=1.8e+02 Score=24.90 Aligned_cols=79 Identities=10% Similarity=0.088 Sum_probs=46.9
Q ss_pred ecCCCCCCcceeEEEECCCCceEECC--CCC-CCCCCceeEEEEeCCEEEE-EecccCCCCCCCCceEEEEeCCCCcEEE
Q 020682 136 GYGSLDYVHSHVDVYNFTDNKWVDRF--DMP-KDMAHSHLGVVSDGRYIYI-VSGQYGPQCRGPTSRTFVLDSETRKWDS 211 (322)
Q Consensus 136 G~~~~~~~~~~v~~yd~~~~~W~~~~--~~~-~p~~r~~~~~~~~~~~Iyv-~GG~~~~~~~~~~~~v~~yd~~t~~W~~ 211 (322)
|.+...+-..++|.+|..++.|..+. +.+ .-.|. ...-+.+..|.| +|...|.-.. -..+++|++.|++=++
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~--GGnLy~~nl~tg~~~~ 154 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSK--GGNLYKYNLNTGNLTE 154 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEcc--CCeEEEEEccCCceeE
Confidence 33444444568999999888876542 222 11123 233344555544 4533333222 4899999999999888
Q ss_pred cCCCCCC
Q 020682 212 IPPLPSP 218 (322)
Q Consensus 212 ~~~~p~~ 218 (322)
+-+...-
T Consensus 155 ly~~~dk 161 (200)
T PF15525_consen 155 LYEWKDK 161 (200)
T ss_pred eeecccc
Confidence 8776553
No 127
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=46.69 E-value=23 Score=22.01 Aligned_cols=21 Identities=29% Similarity=0.816 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHhh
Q 020682 17 CWFLCVLGLLGAALIADFMWA 37 (322)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (322)
+++++++++.++++|+-|.++
T Consensus 11 IlVF~lVglv~i~iva~~iYR 31 (43)
T PF08114_consen 11 ILVFCLVGLVGIGIVALFIYR 31 (43)
T ss_pred eeehHHHHHHHHHHHHHHHHH
Confidence 355667778888888877654
No 128
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=45.98 E-value=2.1e+02 Score=27.91 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=52.0
Q ss_pred EEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC-CCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEe
Q 020682 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (322)
Q Consensus 125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd 203 (322)
...++.++++|+.+. .+..+|..+..- +..-..+ ..-|+ .++...++.|++-||+++ .+-.||
T Consensus 119 ~~~d~t~l~s~sDd~------v~k~~d~s~a~v-~~~l~~htDYVR~-g~~~~~~~hivvtGsYDg--------~vrl~D 182 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDDK------VVKYWDLSTAYV-QAELSGHTDYVRC-GDISPANDHIVVTGSYDG--------KVRLWD 182 (487)
T ss_pred cccCCeEEEecCCCc------eEEEEEcCCcEE-EEEecCCcceeEe-eccccCCCeEEEecCCCc--------eEEEEE
Confidence 456889999988542 133345444442 2111111 11222 234445788999999875 455688
Q ss_pred CCCCcEEEcCCCCCCC-CCcEEEEECCEEEEEeccCCCCCCCCcceEee
Q 020682 204 SETRKWDSIPPLPSPR-YSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (322)
Q Consensus 204 ~~t~~W~~~~~~p~~r-~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~ 251 (322)
+.+.+ .++-.+.... -.-.+.+-.|.+++..| .+.+..||+
T Consensus 183 tR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAg------Gn~vkVWDl 224 (487)
T KOG0310|consen 183 TRSLT-SRVVELNHGCPVESVLALPSGSLIASAG------GNSVKVWDL 224 (487)
T ss_pred eccCC-ceeEEecCCCceeeEEEcCCCCEEEEcC------CCeEEEEEe
Confidence 87764 3332222211 11122233445555443 234777876
No 129
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=45.93 E-value=3.8e+02 Score=28.20 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=21.2
Q ss_pred cEEEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECC
Q 020682 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRF 161 (322)
Q Consensus 122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~ 161 (322)
.+-+++++.||+.... +.++.+|.++- .|+.-.
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC
Confidence 3345679999998553 34777777643 376543
No 130
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=45.79 E-value=2e+02 Score=28.20 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=31.3
Q ss_pred EEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCCCC----C-CCCcEEEEEC-CEEEEE
Q 020682 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPS----P-RYSPATQLWR-GRLHVM 234 (322)
Q Consensus 173 ~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~----~-r~~~~~~~~~-~~Lyv~ 234 (322)
+-++.+++||+... ...++.+|.+|.+ |+.-...+. + ......++.+ +++|+-
T Consensus 56 sPvv~~g~vy~~~~---------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~ 116 (488)
T cd00216 56 TPLVVDGDMYFTTS---------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFG 116 (488)
T ss_pred CCEEECCEEEEeCC---------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEe
Confidence 34577999998654 2578889988765 886432221 1 1112234556 777764
No 131
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=45.67 E-value=2.6e+02 Score=26.12 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=52.8
Q ss_pred EEEECCEEEEEeecCCCCCCcceeEEEECCCCc--eEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEE
Q 020682 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV 201 (322)
Q Consensus 124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~ 201 (322)
.+..++++|+... .+ .++.+|+++.+ |+....... ..........+++||+-.. + ..+++
T Consensus 64 ~~~~dg~v~~~~~---~G----~i~A~d~~~g~~~W~~~~~~~~--~~~~~~~~~~~G~i~~g~~-~--------g~~y~ 125 (370)
T COG1520 64 PADGDGTVYVGTR---DG----NIFALNPDTGLVKWSYPLLGAV--AQLSGPILGSDGKIYVGSW-D--------GKLYA 125 (370)
T ss_pred cEeeCCeEEEecC---CC----cEEEEeCCCCcEEecccCcCcc--eeccCceEEeCCeEEEecc-c--------ceEEE
Confidence 3666889999721 11 58999999876 976433200 1111222333788887433 1 37889
Q ss_pred EeCCCC--cEEEcCCCCCCCCCcEEEEECCEEEEE
Q 020682 202 LDSETR--KWDSIPPLPSPRYSPATQLWRGRLHVM 234 (322)
Q Consensus 202 yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~Lyv~ 234 (322)
||..+. .|+.--+.. ++..-..+..++.+|+.
T Consensus 126 ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~ 159 (370)
T COG1520 126 LDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVG 159 (370)
T ss_pred EECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEe
Confidence 998654 488764432 34444455556666654
No 132
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=44.85 E-value=1.7e+02 Score=23.83 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=47.1
Q ss_pred EEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCC----CcEEE-EECCEEEEEeccCCCCCCCCcceE
Q 020682 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY----SPATQ-LWRGRLHVMGGSKENRHTPGLEHW 249 (322)
Q Consensus 175 ~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~----~~~~~-~~~~~Lyv~GG~~~~~~~~~~~~~ 249 (322)
+.++|.+|=++....... ..-+..||..+.+.++.-++|.... ...+. +.+++|-++--.. ....++.|
T Consensus 2 V~vnG~~hW~~~~~~~~~---~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~---~~~~~~IW 75 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE---KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD---ETSKIEIW 75 (164)
T ss_pred EEECCEEEeeEEecCCCC---ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEecc---CCccEEEE
Confidence 456777776665433221 1268999999999843333443322 22332 2367777773211 12347778
Q ss_pred eeeeeccccccCceEec
Q 020682 250 SIAVKDGKALEKAWRTE 266 (322)
Q Consensus 250 ~~~v~~~~~~~~~W~~~ 266 (322)
-+.-++++ ...|+++
T Consensus 76 vm~~~~~~--~~SWtK~ 90 (164)
T PF07734_consen 76 VMKKYGYG--KESWTKL 90 (164)
T ss_pred EEeeeccC--cceEEEE
Confidence 76544433 7899985
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.62 E-value=2.1e+02 Score=25.68 Aligned_cols=105 Identities=18% Similarity=0.301 Sum_probs=55.1
Q ss_pred EEEEEeecCCCCCCcceeEEEECCCCceEECCC-------------CCC-CCCCceeEEEEeCCEEEEEecccCCCCCCC
Q 020682 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-------------MPK-DMAHSHLGVVSDGRYIYIVSGQYGPQCRGP 195 (322)
Q Consensus 130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-------------~~~-p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~ 195 (322)
+=++-||++..- .+|.||- ++|..-.. -|. ..+++..+.+..+++++|.--
T Consensus 176 krlvSgGcDn~V----kiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~--------- 240 (299)
T KOG1332|consen 176 KRLVSGGCDNLV----KIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK--------- 240 (299)
T ss_pred ceeeccCCccce----eeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe---------
Confidence 457788876332 4666654 35643111 111 135676677777777777532
Q ss_pred CceEEEEeCCCCcEEEc--CCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccC
Q 020682 196 TSRTFVLDSETRKWDSI--PPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP 268 (322)
Q Consensus 196 ~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~ 268 (322)
+.+...|+.- .++|.+....+-..-++-|=|-|| .+.+.+|.- ...++|.+++.
T Consensus 241 -------~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G------dNkvtlwke------~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 241 -------DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG------DNKVTLWKE------NVDGKWEEVGE 296 (299)
T ss_pred -------cCccCcccccccccCCcceEEEEEeccccEEEEecC------CcEEEEEEe------CCCCcEEEccc
Confidence 1223455543 345555443333334444555555 344667753 23678988754
No 134
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=41.72 E-value=67 Score=30.10 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=39.9
Q ss_pred CCEEEEEee---cCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CC--EEEEEecccCCCCCCCCceEEE
Q 020682 128 KNLFYVFAG---YGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GR--YIYIVSGQYGPQCRGPTSRTFV 201 (322)
Q Consensus 128 ~~~lyv~GG---~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~Iyv~GG~~~~~~~~~~~~v~~ 201 (322)
.++|||+-- ....+..-..+|+||+++.+=-..-++..| --++.+. ++ .||..-+. ...+.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~----~~Si~Vsqd~~P~L~~~~~~--------~~~l~v 316 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP----IDSIAVSQDDKPLLYALSAG--------DGTLDV 316 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE----ESEEEEESSSS-EEEEEETT--------TTEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc----cceEEEccCCCcEEEEEcCC--------CCeEEE
Confidence 589999742 233333445899999999875444444332 1133333 33 46654331 368999
Q ss_pred EeCCCCcE
Q 020682 202 LDSETRKW 209 (322)
Q Consensus 202 yd~~t~~W 209 (322)
||..|++=
T Consensus 317 ~D~~tGk~ 324 (342)
T PF06433_consen 317 YDAATGKL 324 (342)
T ss_dssp EETTT--E
T ss_pred EeCcCCcE
Confidence 99998763
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=41.33 E-value=4.1e+02 Score=27.21 Aligned_cols=88 Identities=23% Similarity=0.291 Sum_probs=53.9
Q ss_pred ECCCCCCCCcccEE---EEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC---CCCCCceeEEEEeCCEEEEE
Q 020682 111 QMPSAPVPRLDGAA---IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP---KDMAHSHLGVVSDGRYIYIV 184 (322)
Q Consensus 111 ~~~~~p~~r~~~~~---~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~p~~r~~~~~~~~~~~Iyv~ 184 (322)
.+..+|..+...+. ..-++++++.. . ...+++.++.++-+-.++.+.. ...+-+.......|++|-++
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s----~--~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~ 493 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVS----K--NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAI 493 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEe----c--ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEE
Confidence 33445555433222 23378888876 1 1135777777776666554332 11133444444468899998
Q ss_pred ecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682 185 SGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 185 GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 213 (322)
++ ...+++|++++.+-..+.
T Consensus 494 ~t---------~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 494 ST---------RGQIFVYNLETLESHLLK 513 (691)
T ss_pred ec---------cceEEEEEcccceeecch
Confidence 86 378999999999988776
No 136
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.19 E-value=2.9e+02 Score=25.51 Aligned_cols=124 Identities=12% Similarity=0.030 Sum_probs=71.2
Q ss_pred hccccccCCCC----EEECCCCCCCCccc----EEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCC
Q 020682 98 TFADLPAPDLE----WEQMPSAPVPRLDG----AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAH 169 (322)
Q Consensus 98 ~~~~yd~~~~~----W~~~~~~p~~r~~~----~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r 169 (322)
.+..||...++ |+.--.-+..-.+- ---.++++|++.-+. +... --+|..|..+..=+.+..-|.+
T Consensus 79 HVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D-Gh~n--LGvy~ldr~~g~~~~L~~~ps~--- 152 (339)
T PF09910_consen 79 HVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD-GHAN--LGVYSLDRRTGKAEKLSSNPSL--- 152 (339)
T ss_pred eEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC-Ccce--eeeEEEcccCCceeeccCCCCc---
Confidence 57788876664 54433333222221 122346888887653 2222 2488888888877777666552
Q ss_pred ceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcE--EEcCCC------CC-CCCCcEEEEECCEEEEE
Q 020682 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW--DSIPPL------PS-PRYSPATQLWRGRLHVM 234 (322)
Q Consensus 170 ~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W--~~~~~~------p~-~r~~~~~~~~~~~Lyv~ 234 (322)
-++.+.+..+|-+ .+.... .+.+++||+.+++| +..+.. +. .|...+++...+++|.|
T Consensus 153 --KG~~~~D~a~F~i--~~~~~g---~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 153 --KGTLVHDYACFGI--NNFHKG---VSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred --CceEeeeeEEEec--cccccC---CceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 2345555555533 222222 68999999999999 444311 11 24455667777887765
No 137
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=40.27 E-value=1.3e+02 Score=30.14 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=41.8
Q ss_pred CCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECC--EEEEEeccCCCCCC
Q 020682 168 AHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG--RLHVMGGSKENRHT 243 (322)
Q Consensus 168 ~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~--~Lyv~GG~~~~~~~ 243 (322)
|+.+..++.. .--||+.|- -.++++++++.++|- .|+...-..-.++.++. .|+.+||.++
T Consensus 133 P~~GRDm~y~~~scDly~~gs---------g~evYRlNLEqGrfL--~P~~~~~~~lN~v~in~~hgLla~Gt~~g---- 197 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGS---------GSEVYRLNLEQGRFL--NPFETDSGELNVVSINEEHGLLACGTEDG---- 197 (703)
T ss_pred CcCCccccccCCCccEEEeec---------CcceEEEEccccccc--cccccccccceeeeecCccceEEecccCc----
Confidence 3445555554 345887663 389999999999984 33333323334444443 5888988654
Q ss_pred CCcceEee
Q 020682 244 PGLEHWSI 251 (322)
Q Consensus 244 ~~~~~~~~ 251 (322)
.++.||.
T Consensus 198 -~VEfwDp 204 (703)
T KOG2321|consen 198 -VVEFWDP 204 (703)
T ss_pred -eEEEecc
Confidence 3677763
No 138
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=39.33 E-value=3.4e+02 Score=25.64 Aligned_cols=77 Identities=17% Similarity=0.028 Sum_probs=42.8
Q ss_pred CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCC-CCCCceEEEEeCCCC
Q 020682 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQC-RGPTSRTFVLDSETR 207 (322)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~-~~~~~~v~~yd~~t~ 207 (322)
..+||.-...... .+++.++|..+.+-. ...+.. .|-++.+.-.+..||+.-.+..... -...+.+.+||++|.
T Consensus 13 ~~v~V~d~~~~~~--~~~v~ViD~~~~~v~--g~i~~G-~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 13 RRVYVLDPGHFAA--TTQVYTIDGEAGRVL--GMTDGG-FLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CEEEEECCccccc--CceEEEEECCCCEEE--EEEEcc-CCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 4577765432111 157999998875533 222221 1222233445778999976421111 111488999999988
Q ss_pred cEE
Q 020682 208 KWD 210 (322)
Q Consensus 208 ~W~ 210 (322)
+=.
T Consensus 88 ~~~ 90 (352)
T TIGR02658 88 LPI 90 (352)
T ss_pred cEE
Confidence 744
No 139
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=37.93 E-value=75 Score=29.80 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=50.1
Q ss_pred ceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCce
Q 020682 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276 (322)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~ 276 (322)
..+-.+++.|.+..+ .+..-+.+-++..++|+|+|-|-. .+++-.|+++ .+.--++-.-.....
T Consensus 340 RTikvW~~st~efvR--tl~gHkRGIAClQYr~rlvVSGSS-----DntIRlwdi~-------~G~cLRvLeGHEeLv-- 403 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSS-----DNTIRLWDIE-------CGACLRVLEGHEELV-- 403 (499)
T ss_pred ceEEEEeccceeeeh--hhhcccccceehhccCeEEEecCC-----CceEEEEecc-------ccHHHHHHhchHHhh--
Confidence 456667766655433 343445566778899999988765 3456677754 333322211111111
Q ss_pred eEEEECCEEEEEecCCCCC
Q 020682 277 ACFVFNDRLFVVGGQEGDF 295 (322)
Q Consensus 277 ~~~~~~~~lyv~GG~~~~~ 295 (322)
-++-.+++=.|-|||+|..
T Consensus 404 RciRFd~krIVSGaYDGki 422 (499)
T KOG0281|consen 404 RCIRFDNKRIVSGAYDGKI 422 (499)
T ss_pred hheeecCceeeeccccceE
Confidence 3566788888999998864
No 140
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=37.16 E-value=3.1e+02 Score=25.53 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=26.0
Q ss_pred CCCceEECCCCCCCCCCcee-EEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc
Q 020682 153 TDNKWVDRFDMPKDMAHSHL-GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (322)
Q Consensus 153 ~~~~W~~~~~~~~p~~r~~~-~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 208 (322)
+..+|...+....+ ++.+. +++.+++ .|++.|... ..++.||..++.
T Consensus 27 ~s~~~~l~~lF~~~-aH~~sitavAVs~-~~~aSGssD-------etI~IYDm~k~~ 74 (362)
T KOG0294|consen 27 DSVKPTLKPLFAFS-AHAGSITALAVSG-PYVASGSSD-------ETIHIYDMRKRK 74 (362)
T ss_pred cccceeeecccccc-ccccceeEEEecc-eeEeccCCC-------CcEEEEeccchh
Confidence 34567666555443 33332 3333455 666655322 578899988664
No 141
>PLN00181 protein SPA1-RELATED; Provisional
Probab=36.61 E-value=5.2e+02 Score=27.06 Aligned_cols=87 Identities=8% Similarity=0.117 Sum_probs=40.3
Q ss_pred eeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcE
Q 020682 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223 (322)
Q Consensus 146 ~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~ 223 (322)
.+.+||..+.+-.. .+... ...-.+++.. ++.+++.||.+ ..+..||..+..-. ..+.. .....
T Consensus 556 ~v~lWd~~~~~~~~--~~~~H-~~~V~~l~~~p~~~~~L~Sgs~D--------g~v~iWd~~~~~~~--~~~~~-~~~v~ 621 (793)
T PLN00181 556 VVQVWDVARSQLVT--EMKEH-EKRVWSIDYSSADPTLLASGSDD--------GSVKLWSINQGVSI--GTIKT-KANIC 621 (793)
T ss_pred eEEEEECCCCeEEE--EecCC-CCCEEEEEEcCCCCCEEEEEcCC--------CEEEEEECCCCcEE--EEEec-CCCeE
Confidence 45667776543221 22110 1122334443 45677777653 45777887764321 11111 11111
Q ss_pred EEEE---CCEEEEEeccCCCCCCCCcceEee
Q 020682 224 TQLW---RGRLHVMGGSKENRHTPGLEHWSI 251 (322)
Q Consensus 224 ~~~~---~~~Lyv~GG~~~~~~~~~~~~~~~ 251 (322)
.+.+ ++.+++.|+.++ .+..|++
T Consensus 622 ~v~~~~~~g~~latgs~dg-----~I~iwD~ 647 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADH-----KVYYYDL 647 (793)
T ss_pred EEEEeCCCCCEEEEEeCCC-----eEEEEEC
Confidence 2222 466777777543 3566664
No 142
>PTZ00420 coronin; Provisional
Probab=35.90 E-value=4.8e+02 Score=26.41 Aligned_cols=62 Identities=10% Similarity=0.175 Sum_probs=33.1
Q ss_pred CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~ 207 (322)
..+++.||.+ ..+.++|+.+.+=. ..+..+ ..-.+++. .++.+++.++.+ ..+..||+.+.
T Consensus 138 ~~iLaSgS~D------gtIrIWDl~tg~~~--~~i~~~--~~V~SlswspdG~lLat~s~D--------~~IrIwD~Rsg 199 (568)
T PTZ00420 138 YYIMCSSGFD------SFVNIWDIENEKRA--FQINMP--KKLSSLKWNIKGNLLSGTCVG--------KHMHIIDPRKQ 199 (568)
T ss_pred CeEEEEEeCC------CeEEEEECCCCcEE--EEEecC--CcEEEEEECCCCCEEEEEecC--------CEEEEEECCCC
Confidence 3455566653 24777888765411 111111 11223333 256677766532 56888999876
Q ss_pred c
Q 020682 208 K 208 (322)
Q Consensus 208 ~ 208 (322)
+
T Consensus 200 ~ 200 (568)
T PTZ00420 200 E 200 (568)
T ss_pred c
Confidence 4
No 143
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=35.65 E-value=1.7e+02 Score=27.54 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=41.5
Q ss_pred ECCEEEEEe-ec--CCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CC-EEEEEecccCCCCCCCCceEE
Q 020682 127 IKNLFYVFA-GY--GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GR-YIYIVSGQYGPQCRGPTSRTF 200 (322)
Q Consensus 127 ~~~~lyv~G-G~--~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~-~Iyv~GG~~~~~~~~~~~~v~ 200 (322)
-++++||.. |. .....--+.++++|.++.+ .+...+. .+.-+.+++. +. .+|+.-+. .+++.
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k--vi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~--------s~~Vs 325 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK--RLRKIEL--GHEIDSINVSQDAKPLLYALSTG--------DKTLY 325 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCe--EEEEEeC--CCceeeEEECCCCCeEEEEeCCC--------CCcEE
Confidence 378999942 21 1222223579999987654 4433433 3333445554 45 67776552 47789
Q ss_pred EEeCCCCc
Q 020682 201 VLDSETRK 208 (322)
Q Consensus 201 ~yd~~t~~ 208 (322)
++|..+.+
T Consensus 326 ViD~~t~k 333 (352)
T TIGR02658 326 IFDAETGK 333 (352)
T ss_pred EEECcCCe
Confidence 99998875
No 144
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=35.46 E-value=1.5e+02 Score=26.77 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=31.7
Q ss_pred CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEE-eCCEEEEEecccCC
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGP 190 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~Iyv~GG~~~~ 190 (322)
+..+||.||.+ -.+++||..+..=...-.-.++.| . |++-+ -++.+|..|-+++.
T Consensus 235 ~k~~fVaGged------~~~~kfDy~TgeEi~~~nkgh~gp-V-hcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 235 KKEFFVAGGED------FKVYKFDYNTGEEIGSYNKGHFGP-V-HCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred CCceEEecCcc------eEEEEEeccCCceeeecccCCCCc-e-EEEEECCCCceeeccCCCce
Confidence 45799999964 136777777665333211222111 1 22222 38999999987763
No 145
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.26 E-value=32 Score=25.81 Aligned_cols=9 Identities=22% Similarity=0.360 Sum_probs=4.1
Q ss_pred ccchHHHHH
Q 020682 15 TGCWFLCVL 23 (322)
Q Consensus 15 ~~~~~~~~~ 23 (322)
||.++|+.+
T Consensus 3 SK~~llL~l 11 (95)
T PF07172_consen 3 SKAFLLLGL 11 (95)
T ss_pred hhHHHHHHH
Confidence 455444433
No 146
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=34.98 E-value=2.2e+02 Score=25.00 Aligned_cols=124 Identities=10% Similarity=0.144 Sum_probs=62.9
Q ss_pred ccCCCCEEECCCCC-CCCc-ccEEEEE-CCEEEEEeecCCCCCCcceeEEEECC--CCceEECCCCCCCCCCceeEEEEe
Q 020682 103 PAPDLEWEQMPSAP-VPRL-DGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 103 d~~~~~W~~~~~~p-~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
+-...+|+.....+ .... ..+++.. ++.|+++.-.. ... .++.+-.. -.+|+...+...|.......++..
T Consensus 141 ~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~ 216 (275)
T PF13088_consen 141 DDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND---DIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRL 216 (275)
T ss_dssp SSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST---EEEEEEESSTTSS-EEEEEEECSSCCEEEEEEEC
T ss_pred CCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC---cEEEEEECCCCCcCCCceecccCcccCCceEEEc
Confidence 33455798886664 2233 3344444 56888886643 221 23333333 457998553222224444454443
Q ss_pred -CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCC----CCCcEEEEE-CCEEEE
Q 020682 178 -GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP----RYSPATQLW-RGRLHV 233 (322)
Q Consensus 178 -~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~----r~~~~~~~~-~~~Lyv 233 (322)
++.++++........ .-.+..-.....+|.+...+... -.+..++.. +|+|||
T Consensus 217 ~~g~~~~~~~~~~~r~---~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 217 SDGRLLLVYNNPDGRS---NLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp TTSEEEEEEECSSTSE---EEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCCCEEEEEECCCCCC---ceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 668888877211111 12333333346789977543322 234455555 568886
No 147
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=34.24 E-value=4e+02 Score=25.08 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=50.5
Q ss_pred ceeEEEECCCC-----ceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc---EE-EcCCC
Q 020682 145 SHVDVYNFTDN-----KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK---WD-SIPPL 215 (322)
Q Consensus 145 ~~v~~yd~~~~-----~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~---W~-~~~~~ 215 (322)
++++..|.... .|..+.+-.. -....+...++.+|+....+.. ...+..+++.+.. |. .+.+-
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~---~~~~~v~~~~~~~yi~Tn~~a~-----~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPRED---GVEYYVDHHGDRLYILTNDDAP-----NGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSS---S-EEEEEEETTEEEEEE-TT-T-----T-EEEEEETTSTSGGGEEEEEE--
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCC---ceEEEEEccCCEEEEeeCCCCC-----CcEEEEecccccccccceeEEcCC
Confidence 57899999875 7877654221 2333444558999998764332 4788899988775 66 44433
Q ss_pred CCCCCCcEEEEECCEEEEEec
Q 020682 216 PSPRYSPATQLWRGRLHVMGG 236 (322)
Q Consensus 216 p~~r~~~~~~~~~~~Lyv~GG 236 (322)
.....--.+...+++|++.-=
T Consensus 324 ~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 324 DEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp SSSEEEEEEEEETTEEEEEEE
T ss_pred CCceeEEEEEEECCEEEEEEE
Confidence 222334455677888887643
No 148
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=33.28 E-value=62 Score=20.67 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 020682 19 FLCVLGLLGAALIADFMWASSS 40 (322)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~ 40 (322)
++-+..+|+++.+..|.|+--+
T Consensus 6 lip~sl~l~~~~l~~f~Wavk~ 27 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFLWAVKS 27 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3345557778899999999654
No 149
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.14 E-value=4e+02 Score=24.64 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=65.8
Q ss_pred CCCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCC--ceeEEEEe-CCEEEEEecccCC
Q 020682 116 PVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAH--SHLGVVSD-GRYIYIVSGQYGP 190 (322)
Q Consensus 116 p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r--~~~~~~~~-~~~Iyv~GG~~~~ 190 (322)
|.|-.+|.++.. ...+.+|+-..+. -..+||+.+.+=...-..+. .| ++|++..- ++.+|..-.....
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG~-----~~~v~D~~~g~~~~~~~a~~--gRHFyGHg~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPGT-----FALVFDCRTGQLLQRLWAPP--GRHFYGHGVFSPDGRLLYTTENDYET 74 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCCc-----EEEEEEcCCCceeeEEcCCC--CCEEecCEEEcCCCCEEEEeccccCC
Confidence 455567777765 4677778765433 27889998776433222222 45 44555554 5677776553322
Q ss_pred CCCCCCceEEEEeCCCCcEEEcCCCCCC-CCCcEEEEE-CC-EEEE-Eecc
Q 020682 191 QCRGPTSRTFVLDSETRKWDSIPPLPSP-RYSPATQLW-RG-RLHV-MGGS 237 (322)
Q Consensus 191 ~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~-~~-~Lyv-~GG~ 237 (322)
. ...+-+||.. ...+++..++.. ..-|-+... ++ .|.| -||.
T Consensus 75 g----~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 75 G----RGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred C----cEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 2 3778899998 678888777663 344555544 34 4555 3665
No 150
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=32.90 E-value=51 Score=26.81 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=12.2
Q ss_pred cccc-hHHHHHHHHHHHHHHHHHhhcC
Q 020682 14 KTGC-WFLCVLGLLGAALIADFMWASS 39 (322)
Q Consensus 14 ~~~~-~~~~~~~~~~~~~~~~~~~~~~ 39 (322)
|+.+ ++++.+||+++++ .|+ +.++
T Consensus 7 r~~lLi~vIglAL~aFIv-~d~-~~~~ 31 (145)
T PF13623_consen 7 RGGLLIIVIGLALFAFIV-GDF-RSGS 31 (145)
T ss_pred cchHHHHHHHHHHHHHHH-HHH-hccC
Confidence 4444 3334555555555 666 4443
No 151
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=32.30 E-value=4.1e+02 Score=24.54 Aligned_cols=164 Identities=13% Similarity=0.274 Sum_probs=74.2
Q ss_pred EEEEECCEEEEEeecC----CCCCCcceeEEEE-CCCCceEECCC-C--CCC---CCCceeEEEEeCCEEEEEecccCCC
Q 020682 123 AAIQIKNLFYVFAGYG----SLDYVHSHVDVYN-FTDNKWVDRFD-M--PKD---MAHSHLGVVSDGRYIYIVSGQYGPQ 191 (322)
Q Consensus 123 ~~~~~~~~lyv~GG~~----~~~~~~~~v~~yd-~~~~~W~~~~~-~--~~p---~~r~~~~~~~~~~~Iyv~GG~~~~~ 191 (322)
+++.+++.|+++.... .......-+..+- ....+|+.... . ... ......+.++-+++||++-|.....
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 5677899999987542 1122222233343 34567876321 1 110 1124456677799999987765432
Q ss_pred CCCCCceEEEEe--CCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCC------CC------CCCCcc-eEeeeeecc
Q 020682 192 CRGPTSRTFVLD--SETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE------NR------HTPGLE-HWSIAVKDG 256 (322)
Q Consensus 192 ~~~~~~~v~~yd--~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~------~~------~~~~~~-~~~~~v~~~ 256 (322)
.....-++..+- ....+|.....++..-.... +.++-||-.+ .. ....-+ .+.+-+|.-
T Consensus 83 ~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~------~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~ 156 (310)
T PF13859_consen 83 AGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSW------KQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYST 156 (310)
T ss_dssp -SSTTEEEEEEEEESSSSEE---EE-GGGS-EEE------EEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEES
T ss_pred ccccccceeeeeccCCcceeeecccCCchhcccc------ceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEEC
Confidence 211123344442 22336988766654322100 1233333211 10 011122 355555543
Q ss_pred ccccCceEeccCCC-CCcCceeEEEE-CCEEEEEecCCC
Q 020682 257 KALEKAWRTEIPIP-RGGPHRACFVF-NDRLFVVGGQEG 293 (322)
Q Consensus 257 ~~~~~~W~~~~~~p-~~~~~~~~~~~-~~~lyv~GG~~~ 293 (322)
| ....|+....++ .++..+.++.. +++|+++.--++
T Consensus 157 d-~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~ 194 (310)
T PF13859_consen 157 D-DGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDD 194 (310)
T ss_dssp S-TTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TT
T ss_pred C-CccceEeccccCCCCcceEEEEeccCCeeEEEEeccc
Confidence 3 367899876664 56666788888 789998876554
No 152
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=31.50 E-value=3.6e+02 Score=23.61 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=72.2
Q ss_pred CCEEEEEeecCCCCCCcceeEEEEC-CCCceEECCCCCCCCCCceeEEEE--eCCEEEEEecccCCCCCCCCceEEEEeC
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNF-TDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~-~~~~W~~~~~~~~p~~r~~~~~~~--~~~~Iyv~GG~~~~~~~~~~~~v~~yd~ 204 (322)
++.+++..=....... ..+..|.. .-.+|+.....+. .........+ -++.|+++--.. .. ......+..
T Consensus 118 ~G~l~~~~~~~~~~~~-~~~~~~S~D~G~tW~~~~~~~~-~~~~~e~~~~~~~dG~l~~~~R~~-~~----~~~~~~~S~ 190 (275)
T PF13088_consen 118 DGRLIAPYYHESGGSF-SAFVYYSDDGGKTWSSGSPIPD-GQGECEPSIVELPDGRLLAVFRTE-GN----DDIYISRST 190 (275)
T ss_dssp TTEEEEEEEEESSCEE-EEEEEEESSTTSSEEEEEECEC-SEEEEEEEEEEETTSEEEEEEEEC-SS----TEEEEEEES
T ss_pred CCCEEEEEeeccccCc-ceEEEEeCCCCceeeccccccc-cCCcceeEEEECCCCcEEEEEEcc-CC----CcEEEEEEC
Confidence 6777776211111111 22333444 4567988765532 1233333333 367888876432 11 123333443
Q ss_pred C-CCcEEEcC--CCCCCCCCcEEEEE-CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCC----cCce
Q 020682 205 E-TRKWDSIP--PLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG----GPHR 276 (322)
Q Consensus 205 ~-t~~W~~~~--~~p~~r~~~~~~~~-~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~----~~~~ 276 (322)
. -.+|++.. .+|.+.....++.. +++++++...... +..+.++.-.....+|.....+... ....
T Consensus 191 D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~ 263 (275)
T PF13088_consen 191 DGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDG-------RSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYP 263 (275)
T ss_dssp STTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSST-------SEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEE
T ss_pred CCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCC-------CCceEEEEEeCCCCcCCccEEEeCCCCCcEECC
Confidence 3 34799864 45666555555543 5688887662111 2333333333457889875443322 2333
Q ss_pred eEEEE-CCEEEE
Q 020682 277 ACFVF-NDRLFV 287 (322)
Q Consensus 277 ~~~~~-~~~lyv 287 (322)
.+++. +++|||
T Consensus 264 ~~~~~~dg~l~i 275 (275)
T PF13088_consen 264 SLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEETTEEEE
T ss_pred eeEEeCCCcCCC
Confidence 55555 568886
No 153
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.48 E-value=3.8e+02 Score=23.98 Aligned_cols=83 Identities=17% Similarity=0.126 Sum_probs=52.8
Q ss_pred eeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEE
Q 020682 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (322)
Q Consensus 146 ~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~ 224 (322)
.+.++|..+.+-.+.-.-.. +-.+ ++.+. +..+.+-|+.+ .++..+|..+..-+++..+...+.+-..
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~--aqVN-tV~fNeesSVv~SgsfD--------~s~r~wDCRS~s~ePiQildea~D~V~S 150 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHL--AQVN-TVRFNEESSVVASGSFD--------SSVRLWDCRSRSFEPIQILDEAKDGVSS 150 (307)
T ss_pred eEEEEEcccCeeeeeccccc--ceee-EEEecCcceEEEecccc--------ceeEEEEcccCCCCccchhhhhcCceeE
Confidence 58888988876433211100 1111 12222 33455555542 6778899999998888888888888888
Q ss_pred EEECCEEEEEeccCC
Q 020682 225 QLWRGRLHVMGGSKE 239 (322)
Q Consensus 225 ~~~~~~Lyv~GG~~~ 239 (322)
+.+.+...|.|-.++
T Consensus 151 i~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 151 IDVAEHEIVAGSVDG 165 (307)
T ss_pred EEecccEEEeeccCC
Confidence 888888777776655
No 154
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=30.24 E-value=5e+02 Score=24.92 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=45.6
Q ss_pred CCCEEECCCCCC----CC--cccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-C
Q 020682 106 DLEWEQMPSAPV----PR--LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-G 178 (322)
Q Consensus 106 ~~~W~~~~~~p~----~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~ 178 (322)
-.+|++.. +|. .+ ....+...++.+|++|-.. .++.=+-.-++|+.+...+.. +......... +
T Consensus 119 G~tW~~~~-~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~-p~~~~~i~~~~~ 189 (398)
T PLN00033 119 GKTWVPRS-IPSAEDEDFNYRFNSISFKGKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKL-PGEPVLIKATGP 189 (398)
T ss_pred CCCceECc-cCcccccccccceeeeEEECCEEEEEcCce-------EEEEEcCCCCCceECccccCC-CCCceEEEEECC
Confidence 45898863 221 11 1233444577888885421 122222235789987643221 1112233333 4
Q ss_pred CEEEEEecccCCCCCCCCceEEEEeCCCCcEEEc
Q 020682 179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI 212 (322)
Q Consensus 179 ~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~ 212 (322)
+.++++|. ...++.-+-.-.+|+.+
T Consensus 190 ~~~~ivg~---------~G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 190 KSAEMVTD---------EGAIYVTSNAGRNWKAA 214 (398)
T ss_pred CceEEEec---------cceEEEECCCCCCceEc
Confidence 56777763 14455555556789987
No 155
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=30.02 E-value=71 Score=21.02 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 020682 22 VLGLLGAALIADFMWASSS 40 (322)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ 40 (322)
+..+|+++.++.|.|+--+
T Consensus 10 iSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 10 ISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 4456777899999999653
No 156
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=29.74 E-value=2.8e+02 Score=22.34 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=23.2
Q ss_pred CceEEEEeCCCCc---EEEcCCCCCCCCCcEEEEE---CCEEEEEecc
Q 020682 196 TSRTFVLDSETRK---WDSIPPLPSPRYSPATQLW---RGRLHVMGGS 237 (322)
Q Consensus 196 ~~~v~~yd~~t~~---W~~~~~~p~~r~~~~~~~~---~~~Lyv~GG~ 237 (322)
.+.+..||.+.|. +++++ ..........+ ...|.++||.
T Consensus 72 ~t~llaYDV~~N~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGn 116 (136)
T PF14781_consen 72 QTSLLAYDVENNSDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGN 116 (136)
T ss_pred cceEEEEEcccCchhhhhhCc---cceeEEEEEecCCCCCcEEEECce
Confidence 4889999998876 44444 33222222222 3458888884
No 157
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=28.48 E-value=4.7e+02 Score=24.05 Aligned_cols=154 Identities=11% Similarity=0.147 Sum_probs=63.0
Q ss_pred CCCEEECCC-CCCC-Cccc-EEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCC-CCCCCCCceeEEEE-eCCE
Q 020682 106 DLEWEQMPS-APVP-RLDG-AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-MPKDMAHSHLGVVS-DGRY 180 (322)
Q Consensus 106 ~~~W~~~~~-~p~~-r~~~-~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~p~~r~~~~~~~-~~~~ 180 (322)
-.+|+.... .+.+ ...+ .+...++..|++|... -++.-.=.-.+|++++- .+. +.....+.. .++.
T Consensus 46 G~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~~~l--pgs~~~i~~l~~~~ 116 (302)
T PF14870_consen 46 GKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLSSKL--PGSPFGITALGDGS 116 (302)
T ss_dssp TSS-EE-----S-----EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE----TT---SS-EEEEEEEETTE
T ss_pred CccccccccCCCccceeeEEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecCCCC--CCCeeEEEEcCCCc
Confidence 458988753 2222 1222 3334588899987531 23333335678999752 222 223333343 4667
Q ss_pred EEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeecccccc
Q 020682 181 IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE 260 (322)
Q Consensus 181 Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~ 260 (322)
++++|.. ..++.=.-.-.+|+.+..-...-.......-++++++++-. +.- .-.++ |..
T Consensus 117 ~~l~~~~---------G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~-G~~----~~s~~-------~G~ 175 (302)
T PF14870_consen 117 AELAGDR---------GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR-GNF----YSSWD-------PGQ 175 (302)
T ss_dssp EEEEETT-----------EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT-SSE----EEEE--------TT-
T ss_pred EEEEcCC---------CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc-ccE----EEEec-------CCC
Confidence 7777642 44555555667899875322221111222345666656543 211 11222 556
Q ss_pred CceEeccCCCCCcCceeEEEECCEEEEEe
Q 020682 261 KAWRTEIPIPRGGPHRACFVFNDRLFVVG 289 (322)
Q Consensus 261 ~~W~~~~~~p~~~~~~~~~~~~~~lyv~G 289 (322)
..|.........+.......-++.|+++.
T Consensus 176 ~~w~~~~r~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 176 TTWQPHNRNSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp SS-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred ccceEEccCccceehhceecCCCCEEEEe
Confidence 67887655433443323334456666654
No 158
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=27.95 E-value=4.6e+02 Score=23.73 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=44.2
Q ss_pred hccccccC-CCCEEECCCCCCCCcccEEEE--ECCEEEEEeecCCCCCCcceeEEEECC-CCceEECCCCCCCCCCceeE
Q 020682 98 TFADLPAP-DLEWEQMPSAPVPRLDGAAIQ--IKNLFYVFAGYGSLDYVHSHVDVYNFT-DNKWVDRFDMPKDMAHSHLG 173 (322)
Q Consensus 98 ~~~~yd~~-~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~p~~r~~~~ 173 (322)
.+..||.. ..+++.+..++.......++. -++.||+.+. . . ..+..|++. +.+++.+...+.+ . ..+.
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~-~-~----~~i~~~~~~~~g~l~~~~~~~~~-~-~p~~ 84 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR-P-E----FRVLSYRIADDGALTFAAESPLP-G-SPTH 84 (330)
T ss_pred CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC-C-C----CcEEEEEECCCCceEEeeeecCC-C-CceE
Confidence 34445543 245555544443222222222 2456777543 1 1 346667775 3456554433332 1 1223
Q ss_pred EEEe--CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682 174 VVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (322)
Q Consensus 174 ~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t 206 (322)
++.. ++.||+..-. .+.+.+||+.+
T Consensus 85 i~~~~~g~~l~v~~~~--------~~~v~v~~~~~ 111 (330)
T PRK11028 85 ISTDHQGRFLFSASYN--------ANCVSVSPLDK 111 (330)
T ss_pred EEECCCCCEEEEEEcC--------CCeEEEEEECC
Confidence 4443 5567776421 25677777754
No 159
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=27.55 E-value=5.1e+02 Score=24.11 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=62.6
Q ss_pred hccccccCCCC--EEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECC--CCceEECCCCCCCCCCceeE
Q 020682 98 TFADLPAPDLE--WEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDRFDMPKDMAHSHLG 173 (322)
Q Consensus 98 ~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~p~~r~~~~ 173 (322)
.+..+|+.+.+ |+....--......-...-+++||+-.... .+++||.. +..|+.-.... .+....
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~~~---~~~~~~ 148 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG-------KLYALDASTGTLVWSRNVGGS---PYYASP 148 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc-------eEEEEECCCCcEEEEEecCCC---eEEecC
Confidence 46777777765 865433201111222222267766654422 58999994 55688754441 334444
Q ss_pred EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCC--cEEEcCCC-CCCCCCcEEEEECCEEEEE
Q 020682 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPL-PSPRYSPATQLWRGRLHVM 234 (322)
Q Consensus 174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~--~W~~~~~~-p~~r~~~~~~~~~~~Lyv~ 234 (322)
.++.++.+|+... ...++.+|..+. .|+.-.+. ...+........++.+|+-
T Consensus 149 ~v~~~~~v~~~s~---------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~ 203 (370)
T COG1520 149 PVVGDGTVYVGTD---------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVG 203 (370)
T ss_pred cEEcCcEEEEecC---------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEe
Confidence 5566777777531 367788887765 48744322 1222222222556666654
No 160
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=26.64 E-value=4.8e+02 Score=25.87 Aligned_cols=87 Identities=9% Similarity=-0.008 Sum_probs=51.3
Q ss_pred CCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCC
Q 020682 140 LDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR 219 (322)
Q Consensus 140 ~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r 219 (322)
.+..++.++.+|+.+..=-.-.++.. -| +-.+...++.+.+++|..+... -.+...|+.+-.-..-+.-+..+
T Consensus 370 ~~~~ls~LvllD~~tg~~l~~S~~~~--Ir-~r~~~~~~~~~vaI~g~~G~~~----ikLvlid~~tLev~kes~~~i~~ 442 (489)
T PF05262_consen 370 PNHYLSELVLLDSDTGDTLKRSPVNG--IR-GRTFYEREDDLVAIAGCSGNAA----IKLVLIDPETLEVKKESEDEISW 442 (489)
T ss_pred CCCcceeEEEEeCCCCceecccccce--ec-cceeEEcCCCEEEEeccCCchh----eEEEecCcccceeeeeccccccc
Confidence 34466789999999976555555554 22 2345566777888888755432 34555577776655444433333
Q ss_pred CCcEEEEECCEEEEE
Q 020682 220 YSPATQLWRGRLHVM 234 (322)
Q Consensus 220 ~~~~~~~~~~~Lyv~ 234 (322)
.. .+.+.++.+|++
T Consensus 443 ~S-~l~~~~~~iyaV 456 (489)
T PF05262_consen 443 QS-SLIVDGQMIYAV 456 (489)
T ss_pred cC-ceEEcCCeEEEE
Confidence 22 344455667755
No 161
>PF05776 Papilloma_E5A: Papillomavirus E5A protein; InterPro: IPR008736 Human papillomaviruses (HPVs) are epitheliotropic viruses, and their life cycle is intimately linked to the stratification and differentiation state of the host epithelial tissues. The kinetics of E5a protein expression during the complete viral life cycle has been studied and the highest level was found to be coincidental with the onset of virion morphogenesis [].
Probab=26.20 E-value=79 Score=22.71 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 020682 18 WFLCVLGLLGAALIADFMWAS 38 (322)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~ 38 (322)
+.++++++..+++|.||.=-+
T Consensus 24 ~~VC~vSIilii~is~F~vYt 44 (91)
T PF05776_consen 24 LTVCFVSIILIIFISDFVVYT 44 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999997543
No 162
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=26.12 E-value=5.2e+02 Score=23.78 Aligned_cols=157 Identities=11% Similarity=0.039 Sum_probs=74.4
Q ss_pred eEEEECCCCc-eEECCCCCC--CCCCceeEEEEeCCEEEEEecc---cCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCC
Q 020682 147 VDVYNFTDNK-WVDRFDMPK--DMAHSHLGVVSDGRYIYIVSGQ---YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY 220 (322)
Q Consensus 147 v~~yd~~~~~-W~~~~~~~~--p~~r~~~~~~~~~~~Iyv~GG~---~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~ 220 (322)
+..+++++.. |+.+..... +..|.+=+.+--++.||+-.-. .+.....+...+++||+ .....++-.-.....
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~ 165 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIP 165 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEec
Confidence 5556664333 244433221 2256666666667777764322 11222233578999999 456665542211222
Q ss_pred CcEEEEECC-EEEEEeccCCCCCCCCcceEeeeeecccccc-CceEeccCCCCCcCceeEEEECCEEEEEecCC--CCCC
Q 020682 221 SPATQLWRG-RLHVMGGSKENRHTPGLEHWSIAVKDGKALE-KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQE--GDFM 296 (322)
Q Consensus 221 ~~~~~~~~~-~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~-~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~--~~~~ 296 (322)
+.-+..-++ .||+. ....+.+++|+++-....+.. ..+.... ...+..--.++=-++.||+....+ ...+
T Consensus 166 NGla~SpDg~tly~a-----DT~~~~i~r~~~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g~~v~~ 239 (307)
T COG3386 166 NGLAFSPDGKTLYVA-----DTPANRIHRYDLDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGNLWVAAVWGGGRVVR 239 (307)
T ss_pred CceEECCCCCEEEEE-----eCCCCeEEEEecCcccCccCCcceEEEcc-CCCCCCCceEEeCCCCEEEecccCCceEEE
Confidence 222333344 46654 222344555554321111111 1122222 233333334455678888766655 3456
Q ss_pred CCCCCCeeeeeEee
Q 020682 297 AKPGSPIFKCSRRH 310 (322)
Q Consensus 297 ~~p~~~~~~~~~~~ 310 (322)
|+|.-....-....
T Consensus 240 ~~pdG~l~~~i~lP 253 (307)
T COG3386 240 FNPDGKLLGEIKLP 253 (307)
T ss_pred ECCCCcEEEEEECC
Confidence 77775554444443
No 163
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=25.92 E-value=5.2e+02 Score=23.75 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=57.9
Q ss_pred ccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEE
Q 020682 121 DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF 200 (322)
Q Consensus 121 ~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~ 200 (322)
.-+...-+++.+++|+.. ++..-|-..++|.+...... ....+++.+.+.+=++.|- .+.++
T Consensus 47 ~ia~~~~g~~gwlVg~rg-------tiletdd~g~tw~qal~~~g--r~~f~sv~f~~~egw~vGe---------~sqll 108 (339)
T COG4447 47 DIAFTESGSHGWLVGGRG-------TILETDDGGITWAQALDFLG--RHAFHSVSFLGMEGWIVGE---------PSQLL 108 (339)
T ss_pred ceeEeecCcceEEEcCcc-------eEEEecCCcccchhhhchhh--hhheeeeeeecccccccCC---------cceEE
Confidence 445555688999999963 45556777889988654442 3455566666665555542 25566
Q ss_pred EEeCCCCcEEEcCC-CCCCCCCcEEEEECCE-EEEEec
Q 020682 201 VLDSETRKWDSIPP-LPSPRYSPATQLWRGR-LHVMGG 236 (322)
Q Consensus 201 ~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~-Lyv~GG 236 (322)
.=+-.-.+|.+++- ...+-.-.++...+++ -+++|-
T Consensus 109 ~T~DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd 146 (339)
T COG4447 109 HTTDGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGD 146 (339)
T ss_pred EecCCCcchhhchhhcCCCCCcceeEEecchhhhhhcc
Confidence 66667778999962 2122222344444443 444443
No 164
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=25.76 E-value=7.4e+02 Score=25.45 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=36.0
Q ss_pred ceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCc
Q 020682 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (322)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 208 (322)
..+|.||+.. .|-...-+..|.-|+--+.|-. ++++|-.|+- ..+..||+.+.+
T Consensus 47 g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s---------g~i~EwDl~~lk 101 (691)
T KOG2048|consen 47 GNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS---------GSITEWDLHTLK 101 (691)
T ss_pred CcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCC---------ceEEEEecccCc
Confidence 3589999986 6766554444446666666666 8899999873 455556665544
No 165
>PRK01029 tolB translocation protein TolB; Provisional
Probab=25.74 E-value=6e+02 Score=24.40 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=36.3
Q ss_pred ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 213 (322)
.++++||+.+.+.+.+...+. .-......-.+..|+......+ ...++.+|+.+.+.+++.
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~~~--~~~~p~wSpDG~~L~f~~~~~g------~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTSPE--NKESPSWAIDSLHLVYSAGNSN------ESELYLISLITKKTRKIV 411 (428)
T ss_pred cEEEEEECCCCCeEEccCCCC--CccceEECCCCCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 368899999888877754322 1112222223445555443211 367889999888877775
No 166
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=25.69 E-value=5.3e+02 Score=23.77 Aligned_cols=140 Identities=16% Similarity=0.247 Sum_probs=63.0
Q ss_pred ccEEEEECCEEEEEeecCCCC-C-CcceeEEE--ECCCCceEECCCCCCCCCC--------ceeEEEEeCC-EEEEEecc
Q 020682 121 DGAAIQIKNLFYVFAGYGSLD-Y-VHSHVDVY--NFTDNKWVDRFDMPKDMAH--------SHLGVVSDGR-YIYIVSGQ 187 (322)
Q Consensus 121 ~~~~~~~~~~lyv~GG~~~~~-~-~~~~v~~y--d~~~~~W~~~~~~~~p~~r--------~~~~~~~~~~-~Iyv~GG~ 187 (322)
..++++-+++||++-|..... . -.-++..+ +....+|.....++..... .+.++..-++ .+|-+-+.
T Consensus 62 rPTtvvkgn~IymLvG~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~ 141 (310)
T PF13859_consen 62 RPTTVVKGNKIYMLVGSYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQAT 141 (310)
T ss_dssp EEEEEEETTEEEEEEEEESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEE
T ss_pred eeeeeecceeEEEEEEEEeccccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeee
Confidence 456677899999987753321 1 11123333 2334469876665542110 0111111122 23333333
Q ss_pred cCCCCCCCCceEEEEeCC-CCcEEEcCCCCC-CCCCcEEEEE-CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceE
Q 020682 188 YGPQCRGPTSRTFVLDSE-TRKWDSIPPLPS-PRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR 264 (322)
Q Consensus 188 ~~~~~~~~~~~v~~yd~~-t~~W~~~~~~p~-~r~~~~~~~~-~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~ 264 (322)
...... .-.+.+|... ...|.--..++. .-..+.++.| +++|.++.-++... -..|.- .-.-..|+
T Consensus 142 ~~~~~~--~~SlIiYS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~----rrVYeS-----~DmG~tWt 210 (310)
T PF13859_consen 142 KKNGDG--TVSLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGR----RRVYES-----GDMGTTWT 210 (310)
T ss_dssp ETT-----EEEEEEEESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS-------EEEE-----SSTTSS-E
T ss_pred ccCccc--eEEEEEEECCCccceEeccccCCCCcceEEEEeccCCeeEEEEecccce----EEEEEE-----cccceehh
Confidence 322210 2466778776 678998766644 4557788899 88999997765431 122321 12356788
Q ss_pred e-ccCCCC
Q 020682 265 T-EIPIPR 271 (322)
Q Consensus 265 ~-~~~~p~ 271 (322)
+ +..++|
T Consensus 211 ea~gtlsr 218 (310)
T PF13859_consen 211 EALGTLSR 218 (310)
T ss_dssp E-TTTTTT
T ss_pred hccCccce
Confidence 7 455543
No 167
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=25.27 E-value=3e+02 Score=25.27 Aligned_cols=58 Identities=14% Similarity=0.324 Sum_probs=37.2
Q ss_pred eeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 146 ~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 213 (322)
.+.+|||.+..|.+-+ +|..-+|-. ++-|. .+.+++--- ..+.+.+||+++-+.+.++
T Consensus 255 ~l~rfdPs~~sW~eyp-LPgs~arpy-s~rVD~~grVW~sea--------~agai~rfdpeta~ftv~p 313 (353)
T COG4257 255 SLHRFDPSVTSWIEYP-LPGSKARPY-SMRVDRHGRVWLSEA--------DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eeeEeCcccccceeee-CCCCCCCcc-eeeeccCCcEEeecc--------ccCceeecCcccceEEEec
Confidence 4778999999998743 222113433 33333 466776321 1478899999998887765
No 168
>PLN00181 protein SPA1-RELATED; Provisional
Probab=24.13 E-value=8.4e+02 Score=25.51 Aligned_cols=99 Identities=8% Similarity=0.102 Sum_probs=47.4
Q ss_pred CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEE--eCCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~--~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~ 205 (322)
++.+++.||.+ ..+.+||..+..-.. .+... . .-.++.. .++.+++.|+.+ ..+..||+.
T Consensus 587 ~~~~L~Sgs~D------g~v~iWd~~~~~~~~--~~~~~-~-~v~~v~~~~~~g~~latgs~d--------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDD------GSVKLWSINQGVSIG--TIKTK-A-NICCVQFPSESGRSLAFGSAD--------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCC------CEEEEEECCCCcEEE--EEecC-C-CeEEEEEeCCCCCEEEEEeCC--------CeEEEEECC
Confidence 45667777753 247778877543211 11110 1 1112222 246677777643 567889887
Q ss_pred CCc--EEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEee
Q 020682 206 TRK--WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (322)
Q Consensus 206 t~~--W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~ 251 (322)
+.. ...+..-... -..+...++..++.|+.++ .+..|++
T Consensus 649 ~~~~~~~~~~~h~~~--V~~v~f~~~~~lvs~s~D~-----~ikiWd~ 689 (793)
T PLN00181 649 NPKLPLCTMIGHSKT--VSYVRFVDSSTLVSSSTDN-----TLKLWDL 689 (793)
T ss_pred CCCccceEecCCCCC--EEEEEEeCCCEEEEEECCC-----EEEEEeC
Confidence 542 1111110001 1122223556666776543 3667765
No 169
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.01 E-value=5e+02 Score=22.86 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=62.2
Q ss_pred cEEEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceE
Q 020682 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT 199 (322)
Q Consensus 122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v 199 (322)
..+...++++|.--|.-+.. ++.++|.++. .|++--+ + | .-.+-+.+..++.+|..-=.+ ...
T Consensus 49 QGL~~~~g~i~esTG~yg~S----~ir~~~L~~gq~~~s~~l~-~-~-~~FgEGit~~gd~~y~LTw~e--------gva 113 (262)
T COG3823 49 QGLEYLDGHILESTGLYGFS----KIRVSDLTTGQEIFSEKLA-P-D-TVFGEGITKLGDYFYQLTWKE--------GVA 113 (262)
T ss_pred cceeeeCCEEEEeccccccc----eeEEEeccCceEEEEeecC-C-c-cccccceeeccceEEEEEecc--------cee
Confidence 35566788888887765443 5888998844 4655222 1 1 346667888899999986432 344
Q ss_pred EEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEecc
Q 020682 200 FVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS 237 (322)
Q Consensus 200 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~ 237 (322)
+.||..| -+++...+.+-.+-+.+.-+..|.+--|.
T Consensus 114 f~~d~~t--~~~lg~~~y~GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 114 FKYDADT--LEELGRFSYEGEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred EEEChHH--hhhhcccccCCcceeeecCCcceEeeCCc
Confidence 5677653 34555555555566666666666655553
No 170
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.07 E-value=7e+02 Score=24.17 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=45.7
Q ss_pred eeEEEECCCCc-e-EECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCc
Q 020682 146 HVDVYNFTDNK-W-VDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSP 222 (322)
Q Consensus 146 ~v~~yd~~~~~-W-~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 222 (322)
.+.++|.+.+. = +.+..... .. .++++. .+.+++.|+.+ ..+..+|.++.+=.+.=.........
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~--~v--~~~~f~p~g~~i~Sgs~D--------~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHST--YV--TSVAFSPDGNLLVSGSDD--------GTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCC--ce--EEEEecCCCCEEEEecCC--------CcEEEEeccCCeEEEeeeccCCceEE
Confidence 47778884442 2 22333332 22 333333 44677777753 56778888885544432222222222
Q ss_pred EEEEECCEEEEEeccCCCCCCCCcceEee
Q 020682 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (322)
Q Consensus 223 ~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~ 251 (322)
....-++.+++.+.+++ .+..||+
T Consensus 294 ~~f~~d~~~l~s~s~d~-----~i~vwd~ 317 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDG-----TIRVWDL 317 (456)
T ss_pred EEECCCCCEEEEcCCCc-----cEEEEEC
Confidence 23334566777765433 3666774
No 171
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=23.04 E-value=7.1e+02 Score=24.28 Aligned_cols=102 Identities=11% Similarity=0.156 Sum_probs=52.2
Q ss_pred eeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCC-CCcEE
Q 020682 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR-YSPAT 224 (322)
Q Consensus 146 ~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~ 224 (322)
.+-+||..+.. .++.+|...+-. -++.+.++-.|++-+.+. ..|..+|+...+ ..+..+.+- .....
T Consensus 370 ~vkiwdlks~~--~~a~Fpght~~v-k~i~FsENGY~Lat~add-------~~V~lwDLRKl~--n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 370 VVKIWDLKSQT--NVAKFPGHTGPV-KAISFSENGYWLATAADD-------GSVKLWDLRKLK--NFKTIQLDEKKEVNS 437 (506)
T ss_pred eEEEEEcCCcc--ccccCCCCCCce-eEEEeccCceEEEEEecC-------CeEEEEEehhhc--ccceeecccccccee
Confidence 46778887665 555555311111 122333333444444322 347888887655 233222221 12333
Q ss_pred EEEC--CEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCC
Q 020682 225 QLWR--GRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR 271 (322)
Q Consensus 225 ~~~~--~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~ 271 (322)
..++ |+..+++|. ++.||.++-.+..|+.+..++.
T Consensus 438 ~~fD~SGt~L~~~g~------------~l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 438 LSFDQSGTYLGIAGS------------DLQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred EEEcCCCCeEEeecc------------eeEEEEEecccccceeeehhhh
Confidence 3343 456666653 2345556677999999866543
No 172
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=22.74 E-value=6.1e+02 Score=23.43 Aligned_cols=119 Identities=8% Similarity=-0.001 Sum_probs=59.7
Q ss_pred hhhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeE
Q 020682 94 FLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173 (322)
Q Consensus 94 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~ 173 (322)
.+...+..||..+..=.++..-..+-.+-.- ......+|.||++ ..+...|+....-. ..... +-.-.+
T Consensus 72 ~~dg~vr~~Dln~~~~~~igth~~~i~ci~~-~~~~~~vIsgsWD------~~ik~wD~R~~~~~--~~~d~--~kkVy~ 140 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNEDQIGTHDEGIRCIEY-SYEVGCVISGSWD------KTIKFWDPRNKVVV--GTFDQ--GKKVYC 140 (323)
T ss_pred ccCceEEEEEecCCcceeeccCCCceEEEEe-eccCCeEEEcccC------ccEEEEeccccccc--ccccc--CceEEE
Confidence 3444566777766654444333222111110 1234566778876 34677787762211 11222 123345
Q ss_pred EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEE---cCC----------CCCCCCCcEEEEECCEEEE
Q 020682 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS---IPP----------LPSPRYSPATQLWRGRLHV 233 (322)
Q Consensus 174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~---~~~----------~p~~r~~~~~~~~~~~Lyv 233 (322)
+.+.++.|. +|+. -..+..||+.+..=-. -.+ .| .+.++++..++|+++|
T Consensus 141 ~~v~g~~Lv-Vg~~--------~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 141 MDVSGNRLV-VGTS--------DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred EeccCCEEE-Eeec--------CceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 555566554 4543 2678899987654211 111 22 4556666666776665
No 173
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=22.12 E-value=74 Score=24.30 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=14.7
Q ss_pred EeCCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (322)
Q Consensus 176 ~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~ 205 (322)
...|.++|.||..+.... .+.++.||+.
T Consensus 34 ~~AG~F~vLGG~~EMpW~--FdRlykydIT 61 (103)
T PF14830_consen 34 HKAGTFFVLGGEKEMPWA--FDRLYKYDIT 61 (103)
T ss_dssp EEEEEEEE---TTS---B---SS-EEEE-H
T ss_pred eEccEEEEcCCCccCccc--cCccchhhHH
Confidence 345789999998877664 6899999974
No 174
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=22.01 E-value=1.2e+02 Score=20.56 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 020682 23 LGLLGAALIADFMWASSS 40 (322)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (322)
..+|+++-+..|+|+-=|
T Consensus 11 si~l~~v~l~~flWavks 28 (58)
T COG3197 11 SILLGAVGLGAFLWAVKS 28 (58)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 335566778899999643
No 175
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=20.96 E-value=6.3e+02 Score=22.86 Aligned_cols=97 Identities=22% Similarity=0.373 Sum_probs=52.7
Q ss_pred CCEEEEE-eec-CCCC----CCcceeEEEECCCCceEECCCCCCCC--CCceeE-EEEeC-------CEEEEEecccCCC
Q 020682 128 KNLFYVF-AGY-GSLD----YVHSHVDVYNFTDNKWVDRFDMPKDM--AHSHLG-VVSDG-------RYIYIVSGQYGPQ 191 (322)
Q Consensus 128 ~~~lyv~-GG~-~~~~----~~~~~v~~yd~~~~~W~~~~~~~~p~--~r~~~~-~~~~~-------~~Iyv~GG~~~~~ 191 (322)
.++|+|+ .|. +... ..-.++..||+.+++=.+.-.+|... +.+... .++.. +.+|+.--.
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~---- 86 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG---- 86 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT----
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC----
Confidence 5789998 343 2222 22357999999999854433333211 233333 33332 467876321
Q ss_pred CCCCCceEEEEeCCCCc-EEEcCCCCCCCCCcEEEEECCEEE
Q 020682 192 CRGPTSRTFVLDSETRK-WDSIPPLPSPRYSPATQLWRGRLH 232 (322)
Q Consensus 192 ~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~~~Ly 232 (322)
...+.+||..+++ |+-+.....+........+++..+
T Consensus 87 ----~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~ 124 (287)
T PF03022_consen 87 ----GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESF 124 (287)
T ss_dssp ----TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEE
T ss_pred ----cCcEEEEEccCCcEEEEecCCcceeccccceeccCceE
Confidence 2588999999976 655544333333445555666544
No 176
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.91 E-value=5.2e+02 Score=26.81 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=51.4
Q ss_pred EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeee
Q 020682 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAV 253 (322)
Q Consensus 174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v 253 (322)
+.++-+.-|+++|-.. ..+-.+|..++.=.++=......-..-+..-.|+-.+-|+.++ .+..||+.
T Consensus 541 v~FHPNs~Y~aTGSsD-------~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~-----~I~iWDl~- 607 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSD-------RTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG-----LIKIWDLA- 607 (707)
T ss_pred EEECCcccccccCCCC-------ceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC-----cEEEEEcC-
Confidence 3344566677766221 4566777777766665433222222222233566556666543 36777753
Q ss_pred eccccccCceEeccCCC--CCcCceeEEEECCEEEEEecCCCCC
Q 020682 254 KDGKALEKAWRTEIPIP--RGGPHRACFVFNDRLFVVGGQEGDF 295 (322)
Q Consensus 254 ~~~~~~~~~W~~~~~~p--~~~~~~~~~~~~~~lyv~GG~~~~~ 295 (322)
+.. .+..+- .+...--....+|.+++.||.+...
T Consensus 608 ------~~~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 608 ------NGS--LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred ------CCc--chhhhhcccCceeEEEEecCCCEEEecCCCCeE
Confidence 211 111111 1111112245688899999977653
No 177
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=20.26 E-value=7.7e+02 Score=23.63 Aligned_cols=116 Identities=12% Similarity=0.161 Sum_probs=55.1
Q ss_pred CCCEEECCCCC-CCCcccEEEEEC-CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC--CCCC-------------
Q 020682 106 DLEWEQMPSAP-VPRLDGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP--KDMA------------- 168 (322)
Q Consensus 106 ~~~W~~~~~~p-~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~p~~------------- 168 (322)
-.+|+.++..+ .|-....+..++ +.++++|.. ..+++=+-.-.+|+.+...+ .+..
T Consensus 165 G~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~-------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y 237 (398)
T PLN00033 165 GETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE-------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYY 237 (398)
T ss_pred CCCceECccccCCCCCceEEEEECCCceEEEecc-------ceEEEECCCCCCceEccccccccccccccccccccccee
Confidence 35798775422 122223334444 457777642 23555554567898762211 1111
Q ss_pred -CceeEEEE-eCCEEEEEecccCCCCCCCCceEEE-EeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEecc
Q 020682 169 -HSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFV-LDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS 237 (322)
Q Consensus 169 -r~~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~-yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~ 237 (322)
-+..++.. .++.++++|-. ..++. .|.....|+.+......+........++.++++|..
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~---------G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSR---------GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred ccceeeEEEcCCCCEEEEECC---------ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC
Confidence 11112222 24445555421 22333 344444599887544333333333456788887754
No 178
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=20.22 E-value=1.3e+02 Score=18.70 Aligned_cols=29 Identities=24% Similarity=0.540 Sum_probs=21.3
Q ss_pred eeEEEECCEEEEEecCCCCCCC---CCCCCee
Q 020682 276 RACFVFNDRLFVVGGQEGDFMA---KPGSPIF 304 (322)
Q Consensus 276 ~~~~~~~~~lyv~GG~~~~~~~---~p~~~~~ 304 (322)
..+.+.++.+||..+.+|-..+ ||..|..
T Consensus 5 ~~v~v~g~yaYva~~~~Gl~IvDISnPs~P~~ 36 (42)
T PF08309_consen 5 RDVAVSGNYAYVADGNNGLVIVDISNPSNPVL 36 (42)
T ss_pred EEEEEECCEEEEEeCCCCEEEEECCCCCCCEE
Confidence 4678899999999887776544 5666554
No 179
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.07 E-value=7e+02 Score=23.05 Aligned_cols=60 Identities=20% Similarity=0.146 Sum_probs=37.2
Q ss_pred ceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCC--CCcEEEEECCE-EEEEec
Q 020682 170 SHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR--YSPATQLWRGR-LHVMGG 236 (322)
Q Consensus 170 ~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r--~~~~~~~~~~~-Lyv~GG 236 (322)
.+|+++.. ...+.+|+-..+ .-+.+||+.+.+=...-..|..| ++|++..-+|+ ||..-.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG-------~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn 70 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG-------TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN 70 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC-------cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecc
Confidence 45666665 467777775433 66788999988744332334554 46777776665 776533
Done!