Query 020683
Match_columns 322
No_of_seqs 233 out of 1230
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 4.9E-99 1E-103 724.1 28.6 321 1-322 1-336 (347)
2 PLN03019 carbonic anhydrase 100.0 2.3E-72 5E-77 537.4 25.4 258 64-322 71-330 (330)
3 PLN00416 carbonate dehydratase 100.0 5.9E-66 1.3E-70 483.0 24.4 255 66-321 1-256 (258)
4 PLN03006 carbonate dehydratase 100.0 2.4E-62 5.1E-67 464.9 21.4 233 84-318 49-283 (301)
5 KOG1578 Predicted carbonic anh 100.0 1.5E-53 3.3E-58 395.9 13.9 259 43-313 2-260 (276)
6 PLN02154 carbonic anhydrase 100.0 1.6E-52 3.5E-57 395.6 20.7 205 110-315 71-275 (290)
7 cd00884 beta_CA_cladeB Carboni 100.0 7.6E-53 1.7E-57 379.2 17.3 189 121-310 1-190 (190)
8 PRK10437 carbonic anhydrase; P 100.0 2.5E-52 5.4E-57 383.1 19.7 195 114-317 3-198 (220)
9 cd00883 beta_CA_cladeA Carboni 100.0 7.9E-52 1.7E-56 370.1 17.1 180 122-310 1-182 (182)
10 PRK15219 carbonic anhydrase; P 100.0 5.2E-51 1.1E-55 379.8 19.9 190 108-310 50-244 (245)
11 COG0288 CynT Carbonic anhydras 100.0 1.3E-50 2.8E-55 369.0 18.7 198 113-317 2-202 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 1.8E-46 3.9E-51 327.7 16.6 150 111-310 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 5.5E-43 1.2E-47 302.3 13.4 152 148-307 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 2.8E-41 6E-46 283.1 14.2 119 144-310 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 4.2E-38 9E-43 271.1 13.7 141 144-309 1-141 (142)
16 KOG1578 Predicted carbonic anh 98.3 2E-08 4.4E-13 94.7 -5.3 189 118-309 3-248 (276)
17 PF10070 DUF2309: Uncharacteri 64.2 13 0.00028 41.0 5.7 38 277-314 540-583 (788)
18 PF12778 PXPV: PXPV repeat (3 61.5 4.2 9.1E-05 24.6 0.8 18 41-58 4-21 (22)
19 COG1254 AcyP Acylphosphatases 51.9 12 0.00026 30.3 2.3 19 292-310 29-47 (92)
20 TIGR02742 TrbC_Ftype type-F co 39.3 54 0.0012 28.1 4.5 56 130-204 57-112 (130)
21 PF00009 GTP_EFTU: Elongation 35.1 24 0.00052 30.8 1.8 15 204-218 2-16 (188)
22 PRK11181 23S rRNA (guanosine-2 34.1 1.9E+02 0.004 27.1 7.6 75 133-217 54-133 (244)
23 PRK11440 putative hydrolase; P 31.0 92 0.002 27.4 4.9 47 164-220 90-136 (188)
24 cd01891 TypA_BipA TypA (tyrosi 30.8 32 0.00069 30.0 1.8 13 205-217 2-14 (194)
25 PF08822 DUF1804: Protein of u 30.6 1.3E+02 0.0028 27.1 5.6 57 68-126 105-161 (165)
26 COG0279 GmhA Phosphoheptose is 30.6 2.6E+02 0.0057 25.4 7.5 65 148-223 83-154 (176)
27 PF04019 DUF359: Protein of un 30.4 1.7E+02 0.0036 24.9 6.0 77 140-224 6-82 (121)
28 PF00355 Rieske: Rieske [2Fe-2 29.4 19 0.00041 28.0 0.1 15 295-309 66-80 (97)
29 TIGR01839 PHA_synth_II poly(R) 28.3 35 0.00076 36.2 1.9 74 144-222 215-303 (560)
30 KOG0025 Zn2+-binding dehydroge 26.8 91 0.002 30.9 4.3 42 161-213 153-194 (354)
31 cd01890 LepA LepA subfamily. 26.5 37 0.00079 28.7 1.4 13 206-218 1-13 (179)
32 PF00561 Abhydrolase_1: alpha/ 26.3 58 0.0013 27.8 2.7 31 190-221 28-58 (230)
33 COG1116 TauB ABC-type nitrate/ 26.3 40 0.00086 32.2 1.7 14 205-218 29-42 (248)
34 PRK09778 putative antitoxin of 25.5 94 0.002 25.6 3.5 73 12-103 6-80 (97)
35 PRK14432 acylphosphatase; Prov 24.5 55 0.0012 26.3 2.0 19 292-310 27-45 (93)
36 cd03528 Rieske_RO_ferredoxin R 24.1 30 0.00064 27.0 0.4 14 295-308 62-75 (98)
37 KOG2781 U3 small nucleolar rib 23.8 2E+02 0.0043 27.8 5.8 67 141-217 78-144 (290)
38 PF05952 ComX: Bacillus compet 23.7 73 0.0016 23.7 2.3 25 274-298 5-29 (57)
39 cd04160 Arfrp1 Arfrp1 subfamil 23.1 45 0.00098 27.7 1.3 12 207-218 1-12 (167)
40 PRK14440 acylphosphatase; Prov 22.9 65 0.0014 25.7 2.1 19 292-310 28-46 (90)
41 cd03478 Rieske_AIFL_N AIFL (ap 22.8 28 0.00061 27.2 0.0 14 295-308 61-74 (95)
42 PRK14430 acylphosphatase; Prov 22.6 63 0.0014 25.9 2.0 19 292-310 29-47 (92)
43 PF14618 DUF4452: Domain of un 22.4 66 0.0014 28.9 2.2 62 6-67 77-148 (165)
44 PRK14423 acylphosphatase; Prov 22.4 77 0.0017 25.3 2.5 19 292-310 30-48 (92)
45 cd04167 Snu114p Snu114p subfam 21.9 50 0.0011 29.5 1.5 13 206-218 1-13 (213)
46 PF08184 Cuticle_2: Cuticle pr 21.5 45 0.00098 24.1 0.8 13 296-308 7-19 (59)
47 PRK14066 exodeoxyribonuclease 21.1 1.6E+02 0.0034 23.0 3.9 18 66-83 1-18 (75)
48 PRK14445 acylphosphatase; Prov 21.0 87 0.0019 24.9 2.5 19 292-310 29-47 (91)
49 cd01878 HflX HflX subfamily. 21.0 63 0.0014 28.2 1.9 16 203-218 39-54 (204)
50 PTZ00119 40S ribosomal protein 20.8 4.3E+02 0.0093 25.9 7.4 28 132-159 175-202 (302)
51 PF01764 Lipase_3: Lipase (cla 20.7 1.1E+02 0.0024 24.8 3.1 31 192-222 50-80 (140)
52 cd04169 RF3 RF3 subfamily. Pe 20.3 65 0.0014 30.5 1.9 14 205-218 2-15 (267)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=4.9e-99 Score=724.14 Aligned_cols=321 Identities=77% Similarity=1.192 Sum_probs=297.1
Q ss_pred CCcccccceeecccccccccccccCCCCc-eEEEeec------------CCCCCCCcccCCccccCCCcccCcchhhHhh
Q 020683 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLN------------SPASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (322)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (322)
|||++|||||+||++++++++++ .++|| ++||+|+ |+++||+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 8999996 1133899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 020683 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (322)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~el~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (322)
++|||+||++|+|||+||++|+++|++||+++|+||++.. .+.++|++++|++||++|+.+.+.+++++|++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 9999999999999999999999999999999999998632 35689999999999999999999999999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCCcccccccc
Q 020683 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (322)
Q Consensus 146 Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~ 225 (322)
|+++||+||||||+|+.+||++|||+||+||+||+|+++|...|++++++|||||.+|||++|||||||+||||+|+++.
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~ 239 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876556678999999999999999999999999999999876
Q ss_pred ccCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEEEEEccCc
Q 020683 226 TFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 305 (322)
Q Consensus 226 ~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~vYDi~tG 305 (322)
.+++....++|++|+..+.|++.++..+++...+.+++..|+++||++||++|++||+|++++++|+|.|||||||++||
T Consensus 240 ~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~TG 319 (347)
T PLN03014 240 PLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKG 319 (347)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCc
Confidence 55555557899999999999988776666666777888888899999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCCCCC
Q 020683 306 SFELWGLDFSLSPPLSV 322 (322)
Q Consensus 306 ~v~~~~~~~~~~~~~~~ 322 (322)
+|++|+.+++++|++++
T Consensus 320 ~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 320 AFELWGLEFGLSETSSV 336 (347)
T ss_pred eEEEeccccccCCcccc
Confidence 99999999999999875
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=2.3e-72 Score=537.41 Aligned_cols=258 Identities=79% Similarity=1.259 Sum_probs=235.5
Q ss_pred hHhhhhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCC--CCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhh
Q 020683 64 EDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEKNPALYSELA 141 (322)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~el~~~--~~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La 141 (322)
++|+++|||+||++|+|||+||++|+++|++||+++|+||++. ..+++++++++|++||++|+.+.+..+|++|.+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La 150 (330)
T PLN03019 71 RRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELA 150 (330)
T ss_pred HHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhc
Confidence 4588999999999999999999999999999999999999863 23668999999999999999999989999999999
Q ss_pred cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCCcccc
Q 020683 142 KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (322)
Q Consensus 142 ~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~A 221 (322)
+||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...+++++++|||||.+|||++|||||||+||||+|
T Consensus 151 ~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkA 230 (330)
T PLN03019 151 KGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 230 (330)
T ss_pred cCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHH
Confidence 99999999999999999999999999999999999999999988766778999999999999999999999999999999
Q ss_pred ccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEEEEE
Q 020683 222 LMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYD 301 (322)
Q Consensus 222 al~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~vYD 301 (322)
+++..+++....++|++|++.+.|++.++....+...+.+++..+++ ||++||+||+++|+|++++++|+|.||||+||
T Consensus 231 al~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YD 309 (330)
T PLN03019 231 LMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYYD 309 (330)
T ss_pred HHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEE
Confidence 98765555555789999999999998766554444456666666666 99999999999999999999999999999999
Q ss_pred ccCceEEEEeccCCCCCCCCC
Q 020683 302 FVNGSFELWGLDFSLSPPLSV 322 (322)
Q Consensus 302 i~tG~v~~~~~~~~~~~~~~~ 322 (322)
++||+|++|+.+++++|++++
T Consensus 310 l~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 310 FVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred CCCceEEEEccccCcCCCCcC
Confidence 999999999999999999986
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=5.9e-66 Score=483.04 Aligned_cols=255 Identities=62% Similarity=1.057 Sum_probs=230.1
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 020683 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (322)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~el~~~~~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (322)
|+.+||+++|.+|.+||+.|++++++++++++.++++|++.. .+|.+++++|++||+||+.+++.+++++|++|+.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 789999999999999999999999999999999999999875 7799999999999999999998888999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCCcccccccc
Q 020683 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (322)
Q Consensus 146 Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~ 225 (322)
|+++|||||||||+|+.|||.+|||+||+||+||+|+++|...+++++++|||||.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999875445678899999999999999999999999999999864
Q ss_pred ccCC-CCCchhHHHHHHhccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEEEEEccC
Q 020683 226 TFDG-NNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVN 304 (322)
Q Consensus 226 ~~~g-~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~vYDi~t 304 (322)
.+.. ....+++..|+..+.|++..........++.+.+..++++||++|+++|++||+|++++++|++.|||||||++|
T Consensus 160 ~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~T 239 (258)
T PLN00416 160 EDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVK 239 (258)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCC
Confidence 3221 122468999999888887765554444556666667889999999999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCCCCC
Q 020683 305 GSFELWGLDFSLSPPLS 321 (322)
Q Consensus 305 G~v~~~~~~~~~~~~~~ 321 (322)
|+|++|+++++.+|...
T Consensus 240 G~v~~~~~~~~~~p~~~ 256 (258)
T PLN00416 240 GTFDLWELDFKTTPAFA 256 (258)
T ss_pred ceEEEeccCcCCCCCcc
Confidence 99999999999999753
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=2.4e-62 Score=464.89 Aligned_cols=233 Identities=42% Similarity=0.795 Sum_probs=209.1
Q ss_pred hhcCchhhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChh
Q 020683 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPS 161 (322)
Q Consensus 84 ~~~~l~~~a~~~~~~~t~el~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe 161 (322)
+..+|..+|++|++++|+||++.. ...+++++++|++||.+|+..++..++++|++|++||+|+++||+||||||+|+
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 456888999999999999998654 345899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHH
Q 020683 162 HVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 241 (322)
Q Consensus 162 ~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~ 241 (322)
.|||++|||+|||||+||+|+++|... .++.++|||||.+|||++|||||||+||||+|+++..+.+ ...++|+.|+.
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~~wv~ 206 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIHNWVV 206 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHHHHHH
Confidence 999999999999999999999987532 5688999999999999999999999999999998765544 35679999999
Q ss_pred hccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEEEEEccCceEEEEeccCCCCC
Q 020683 242 IGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSP 318 (322)
Q Consensus 242 ~~~pa~~~~~~~~~~~~~~e~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~vYDi~tG~v~~~~~~~~~~~ 318 (322)
.+.+++..+........+++++..|+++||++|+++|++||+|++++++|+|.|||||||+.||+++.|+++|+++.
T Consensus 207 ~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~~ 283 (301)
T PLN03006 207 VGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAASR 283 (301)
T ss_pred HHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccccc
Confidence 88888766654333445777888899999999999999999999999999999999999999999999999998764
No 5
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-53 Score=395.87 Aligned_cols=259 Identities=46% Similarity=0.740 Sum_probs=247.8
Q ss_pred CcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHH
Q 020683 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (322)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~el~~~~~~~p~~~l~~Ll~GN 122 (322)
.|+|+.+.|..+.+...+.+..||..++|+.++..+.++|..+.++ +++++++++|++ .+.+++|+++|
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999998899999999999999999999999999 899999999993 57899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHh
Q 020683 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (322)
Q Consensus 123 ~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~ 202 (322)
..|.++.+.++|.+|..++++|+|+.+||+|+||||+|++|++++|||.|++||++|+++|.|..++.+++|+|||+|.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred cCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHHhcCh
Q 020683 203 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYP 282 (322)
Q Consensus 203 L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~~nV~~qv~~L~s~P 282 (322)
|+|++|+||||++|||++++|....++. ...|+++|+.+..+++..+++++...+|.+||.+|+.++++.++.+|.+||
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~ 229 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYP 229 (276)
T ss_pred hccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999999999887766 678999999999999999988888899999999999999999999999999
Q ss_pred hHHhhhcCCceEEEEEEEEccCceEEEEecc
Q 020683 283 FVREGLVNKTLALKGGYYDFVNGSFELWGLD 313 (322)
Q Consensus 283 ~V~~~v~~g~L~V~G~vYDi~tG~v~~~~~~ 313 (322)
++++++.+|.+.+||++||+..|.+++|.+|
T Consensus 230 ~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ld 260 (276)
T KOG1578|consen 230 FVREAVVKGFLQVHGGYYNFSKGTKEFWELD 260 (276)
T ss_pred HHHHHHhhcceeeeeeeEEeccCceeEEEec
Confidence 9999999999999999999999999999999
No 6
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=1.6e-52 Score=395.59 Aligned_cols=205 Identities=41% Similarity=0.753 Sum_probs=177.8
Q ss_pred ChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCccc
Q 020683 110 KAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKY 189 (322)
Q Consensus 110 ~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~ 189 (322)
+..+.+++|++||++|+.+++..++++|++|+.||+|+++||+||||||+|+.|||++|||+||+||+||+|++++.. .
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~ 149 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-P 149 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-c
Confidence 345779999999999999999999999999999999999999999999999999999999999999999999987542 2
Q ss_pred chhhHHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhhHHHHH
Q 020683 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKE 269 (322)
Q Consensus 190 ~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~~ 269 (322)
.+++++|||||.+|+|++|||||||+||||+|+++.........+++++|+..+.+++.+.....+...+++.+..++++
T Consensus 150 ~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~ 229 (290)
T PLN02154 150 TETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKE 229 (290)
T ss_pred cchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 46889999999999999999999999999999987432222345789999987776654433222334556667778899
Q ss_pred HHHHHHHHHhcChhHHhhhcCCceEEEEEEEEccCceEEEEeccCC
Q 020683 270 AVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFS 315 (322)
Q Consensus 270 nV~~qv~~L~s~P~V~~~v~~g~L~V~G~vYDi~tG~v~~~~~~~~ 315 (322)
||++|++||++||+|++++++|+|.|||||||+.||+|+.|+.+.+
T Consensus 230 NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~ 275 (290)
T PLN02154 230 SIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD 275 (290)
T ss_pred HHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC
Confidence 9999999999999999999999999999999999999999988764
No 7
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=7.6e-53 Score=379.23 Aligned_cols=189 Identities=51% Similarity=0.812 Sum_probs=166.0
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCc-ccchhhHHHHHH
Q 020683 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (322)
Q Consensus 121 GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~-~~~~v~aSLEyA 199 (322)
||++|++..+..++++|++|+.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++.. .+++++++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999888889999999999999999999999999999999999999999999999999987532 245689999999
Q ss_pred HHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHHh
Q 020683 200 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLL 279 (322)
Q Consensus 200 V~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~~nV~~qv~~L~ 279 (322)
|.+|+|++|||||||+||||+|+++... +....+++..|+..+.|++..........+..+..+.++++||.+|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986433 223456899999998888876655443344555667788999999999999
Q ss_pred cChhHHhhhcCCceEEEEEEEEccCceEEEE
Q 020683 280 TYPFVREGLVNKTLALKGGYYDFVNGSFELW 310 (322)
Q Consensus 280 s~P~V~~~v~~g~L~V~G~vYDi~tG~v~~~ 310 (322)
++|+|++++++|+|.|||||||+.||+|+.|
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999864
No 8
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=2.5e-52 Score=383.12 Aligned_cols=195 Identities=24% Similarity=0.381 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhh
Q 020683 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (322)
Q Consensus 114 ~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~ 193 (322)
.+++|++||++|+++.+..++++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++.|. +++
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 4789999999999998888999999999999999999999999999999999999999999999999998754 478
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhhHHHHHHHHH
Q 020683 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNV 273 (322)
Q Consensus 194 aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~~nV~~ 273 (322)
++|||||.+|||++|||||||+||||+|+++.. ..+++..|+..+.|+...........+..+....++++||+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~ 153 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVME 153 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998642 236899999998888765444444444556667788999999
Q ss_pred HHHHHhcChhHHhhhcCC-ceEEEEEEEEccCceEEEEeccCCCC
Q 020683 274 SLSNLLTYPFVREGLVNK-TLALKGGYYDFVNGSFELWGLDFSLS 317 (322)
Q Consensus 274 qv~~L~s~P~V~~~v~~g-~L~V~G~vYDi~tG~v~~~~~~~~~~ 317 (322)
|+++|+++|+|++++++| +|.||||+||+.||+|+.++.+....
T Consensus 154 qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~ 198 (220)
T PRK10437 154 QVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNR 198 (220)
T ss_pred HHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCch
Confidence 999999999999999999 69999999999999999988766543
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=7.9e-52 Score=370.06 Aligned_cols=180 Identities=31% Similarity=0.502 Sum_probs=157.5
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHH
Q 020683 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (322)
Q Consensus 122 N~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~ 201 (322)
|++|+++++.++|++|++|+.||+|+++|||||||||+|+.+||.+|||+||+||+||+|+++|. ++.+||||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998754 47899999999
Q ss_pred hcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCC-CchhhhhHHHHHHHHHHHHHHhc
Q 020683 202 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDK-PFGDQCTYCEKEAVNVSLSNLLT 280 (322)
Q Consensus 202 ~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~-~~~e~~~~~~~~nV~~qv~~L~s 280 (322)
+|||++|||||||+||||+|+++.. ..+++..|+....++.......+... +..+....++++||++|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988642 24689999988777665433222221 33445567889999999999999
Q ss_pred ChhHHhhhcC-CceEEEEEEEEccCceEEEE
Q 020683 281 YPFVREGLVN-KTLALKGGYYDFVNGSFELW 310 (322)
Q Consensus 281 ~P~V~~~v~~-g~L~V~G~vYDi~tG~v~~~ 310 (322)
+|+|++++++ |+|.||||+||+.||+|+.+
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999999 89999999999999999753
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=5.2e-51 Score=379.84 Aligned_cols=190 Identities=22% Similarity=0.335 Sum_probs=162.5
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhHH---hhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCC
Q 020683 108 DTKAFDSVERIKEGFIHFKREKYEKNPALYS---ELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184 (322)
Q Consensus 108 ~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~---~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~ 184 (322)
..+|.+++++|++||+||+++.+. +++++. ++++||+|+++|||||||||+||.+||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 378999999999999999998864 444432 467899999999999999999999999999999999999999964
Q ss_pred CCcccchhhHHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhc-CCCCchhhh
Q 020683 185 DQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQC 263 (322)
Q Consensus 185 d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~-~~~~~~e~~ 263 (322)
++++||||||.+|||++|||||||+||||+|+++.. ..+++..|+..+.|++....... ...+..+.+
T Consensus 128 ------~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~-----~~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~ 196 (245)
T PRK15219 128 ------DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNV-----ELGNLTGLLDRIKPAIEVTEFDGERSSKNYKFV 196 (245)
T ss_pred ------chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcC-----CcchHHHHHHHHHHHHHHHhhcccccCCHHHHH
Confidence 267899999999999999999999999999998643 24689999999999886543211 111234556
Q ss_pred hHHHHHHHHHHHHHHhc-ChhHHhhhcCCceEEEEEEEEccCceEEEE
Q 020683 264 TYCEKEAVNVSLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELW 310 (322)
Q Consensus 264 ~~~~~~nV~~qv~~L~s-~P~V~~~v~~g~L~V~G~vYDi~tG~v~~~ 310 (322)
..++++||+.|+++|++ +|++++++++|+|.||||+||++||+|+++
T Consensus 197 ~~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 197 DAVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 67889999999999986 899999999999999999999999999987
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-50 Score=369.05 Aligned_cols=198 Identities=32% Similarity=0.497 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccch
Q 020683 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (322)
Q Consensus 113 ~~l~~Ll~GN~rF~~~~~~~~p~~~~~La-~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~ 191 (322)
+.+++|++||++|.++.+..++.+|..|+ ++|+|+++|||||||||+||.+||++|||+||+||+||+|++++ .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 46899999999999999888899998876 56999999999999999999999999999999999999999875 35
Q ss_pred hhHHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCch-hhhhHHHHHH
Q 020683 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFG-DQCTYCEKEA 270 (322)
Q Consensus 192 v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~-e~~~~~~~~n 270 (322)
+++||||||.+|||++|||||||+|||++|+++....+.. .+..|+....+....+....+..... ++....++.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8999999999999999999999999999999876554432 68999977666654443332222222 4455667899
Q ss_pred HHHHHHHHhcChhHHhhhcCCc-eEEEEEEEEccCceEEEEeccCCCC
Q 020683 271 VNVSLSNLLTYPFVREGLVNKT-LALKGGYYDFVNGSFELWGLDFSLS 317 (322)
Q Consensus 271 V~~qv~~L~s~P~V~~~v~~g~-L~V~G~vYDi~tG~v~~~~~~~~~~ 317 (322)
|+.|+++|+++|.|++++..++ |.||||+||++||+++.++......
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~ 202 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDF 202 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEecccccc
Confidence 9999999999999999988776 9999999999999999887765443
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.8e-46 Score=327.70 Aligned_cols=150 Identities=35% Similarity=0.531 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCc
Q 020683 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (322)
Q Consensus 111 p~~~l~~Ll~GN~rF~~~~~~~---~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~ 187 (322)
|.+++++|++||++|.+++... .++.|.+++++|+|+++||||||||++|+.+||++|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 5688999999999999876431 256788999999999999999999999999999999999999999999975
Q ss_pred ccchhhHHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhhHHH
Q 020683 188 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCE 267 (322)
Q Consensus 188 ~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~ 267 (322)
++++|||||+.+|||++|||||||+||+++++ ++
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~ 110 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AV 110 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HH
Confidence 37899999999999999999999999999864 34
Q ss_pred HHHHHHHHHHHhcChhHHh-hhcCCceEEEEEEEEccCceEEEE
Q 020683 268 KEAVNVSLSNLLTYPFVRE-GLVNKTLALKGGYYDFVNGSFELW 310 (322)
Q Consensus 268 ~~nV~~qv~~L~s~P~V~~-~v~~g~L~V~G~vYDi~tG~v~~~ 310 (322)
++||+.|+++|+++|+|++ ++++|++.||||+||++||+++++
T Consensus 111 ~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 111 RANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 6799999999999999988 999999999999999999999873
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=5.5e-43 Score=302.32 Aligned_cols=152 Identities=34% Similarity=0.545 Sum_probs=121.7
Q ss_pred EEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCCcccccccccc
Q 020683 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 227 (322)
Q Consensus 148 ~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~ 227 (322)
++||||||||++|+.+||.+|||+||+||+||+|++.+ .+++++||||+.+|||++|||||||+|||+++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 58999999999999999999999999999999998764 46889999999999999999999999999998875322
Q ss_pred CCCCCchhHHHHHHhccchhhh-hhhhcCCCCchhhhhHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEEEEEccCce
Q 020683 228 DGNNSTDFIEDWVKIGIPAKSK-VLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGS 306 (322)
Q Consensus 228 ~g~~~~~~I~~wl~~~~pa~~~-~~~~~~~~~~~e~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~vYDi~tG~ 306 (322)
..+.+++|++...|+... ...........+.....+++||++|+++|+++|+|++++++|++.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 346899999988887765 222212211122233447899999999999999999999999999999999999998
Q ss_pred E
Q 020683 307 F 307 (322)
Q Consensus 307 v 307 (322)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.8e-41 Score=283.14 Aligned_cols=119 Identities=42% Similarity=0.744 Sum_probs=111.9
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 020683 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (322)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal 223 (322)
|+|+++||||||||++|+.+||++|||+||+||+||+|++.+ .++++|||||+.+||+++|+|||||+|||+++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 799999999999999999999999999999999999998764 35889999999999999999999999999875
Q ss_pred ccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEEEEEcc
Q 020683 224 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 303 (322)
Q Consensus 224 ~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~vYDi~ 303 (322)
..++||++|+++|+++|+++++++++++.|||++||++
T Consensus 75 ------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~ 112 (119)
T cd00382 75 ------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIE 112 (119)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECC
Confidence 34679999999999999999999999999999999999
Q ss_pred CceEEEE
Q 020683 304 NGSFELW 310 (322)
Q Consensus 304 tG~v~~~ 310 (322)
||+++++
T Consensus 113 tG~v~~~ 119 (119)
T cd00382 113 TGKLEVL 119 (119)
T ss_pred CCEEEeC
Confidence 9999874
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4.2e-38 Score=271.14 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=112.5
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 020683 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (322)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal 223 (322)
+.++++||||||||++|+.+||.+|||+||+||+||+|++ ++++|||||+.+||+++|+|||||+|||++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3679999999999999999999999999999999999986 377899999999999999999999999999864
Q ss_pred ccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEEEEEcc
Q 020683 224 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 303 (322)
Q Consensus 224 ~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~vYDi~ 303 (322)
+ .+..|+............ ............++||++|+++|+++|+|++ +++||||+||++
T Consensus 74 ~----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~ 135 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVK 135 (142)
T ss_pred H----------HHHHHHHHhcCcchhccc---CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECC
Confidence 3 245566532111000000 0111111234568999999999999999994 899999999999
Q ss_pred CceEEE
Q 020683 304 NGSFEL 309 (322)
Q Consensus 304 tG~v~~ 309 (322)
||+++.
T Consensus 136 tG~v~~ 141 (142)
T cd03379 136 TGKLTE 141 (142)
T ss_pred CCEEEe
Confidence 999975
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.30 E-value=2e-08 Score=94.68 Aligned_cols=189 Identities=22% Similarity=0.245 Sum_probs=119.1
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhh----------------cCCCCCceEEEeccCccC
Q 020683 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (322)
Q Consensus 118 Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~i----------------lg~~pGE~FVvRNaGN~V 181 (322)
|+.|..+|+..-... +.+++..-++|.+..++|+|||+-|... +..+.||.||+||.||++
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 667788887765422 2256777889999999999999999877 667899999999999999
Q ss_pred CCCCCcc-----cchhhHHHHHHHHhcCcceEEEeccCCCCcccccccccc--C---CCCCchhHHHHHHhcc-------
Q 020683 182 PPYDQTK-----YAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF--D---GNNSTDFIEDWVKIGI------- 244 (322)
Q Consensus 182 ~~~d~~~-----~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~--~---g~~~~~~I~~wl~~~~------- 244 (322)
+....-. .+--.++|+.|+..-...||+||||++|-+++...+... + .......++-|+....
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ 159 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVI 159 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEe
Confidence 8642100 011113577788888899999999999999997655433 1 1122256888986321
Q ss_pred --ch------hhhhhhhcCCCCchh-hh-----------hHHHHHHHHHHHHHHhcChhHH--hhhcCCceEEEE--EEE
Q 020683 245 --PA------KSKVLTEHGDKPFGD-QC-----------TYCEKEAVNVSLSNLLTYPFVR--EGLVNKTLALKG--GYY 300 (322)
Q Consensus 245 --pa------~~~~~~~~~~~~~~e-~~-----------~~~~~~nV~~qv~~L~s~P~V~--~~v~~g~L~V~G--~vY 300 (322)
.. ......+-+..+|.+ |. ..+...|..+|.+|..++.+.. .++.......+| -+.
T Consensus 160 ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~ 239 (276)
T KOG1578|consen 160 GHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGF 239 (276)
T ss_pred ccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcc
Confidence 00 000000111112221 10 1222346678999988887776 455555555556 455
Q ss_pred EccCceEEE
Q 020683 301 DFVNGSFEL 309 (322)
Q Consensus 301 Di~tG~v~~ 309 (322)
+...|..+.
T Consensus 240 l~~~G~~Y~ 248 (276)
T KOG1578|consen 240 LQVHGGYYN 248 (276)
T ss_pred eeeeeeeEE
Confidence 555555443
No 17
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=64.17 E-value=13 Score=40.99 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=28.3
Q ss_pred HHhcChhHHhhhcCCce------EEEEEEEEccCceEEEEeccC
Q 020683 277 NLLTYPFVREGLVNKTL------ALKGGYYDFVNGSFELWGLDF 314 (322)
Q Consensus 277 ~L~s~P~V~~~v~~g~L------~V~G~vYDi~tG~v~~~~~~~ 314 (322)
.|...|-||+.++++.| ..+|+..|.-|-+|++++.+.
T Consensus 540 ~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 540 ALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 34556666666655444 468999999999999998874
No 18
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=61.52 E-value=4.2 Score=24.58 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=13.7
Q ss_pred CCCcccCCccccCCCccc
Q 020683 41 PPSLIRNEPVFAAPAPII 58 (322)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (322)
.|..++-+||+.||+|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 566777888888888764
No 19
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=51.95 E-value=12 Score=30.30 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.9
Q ss_pred ceEEEEEEEEccCceEEEE
Q 020683 292 TLALKGGYYDFVNGSFELW 310 (322)
Q Consensus 292 ~L~V~G~vYDi~tG~v~~~ 310 (322)
+|.|+||+++..+|.|+.+
T Consensus 29 ~lgl~G~V~N~~DGsVeiv 47 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIV 47 (92)
T ss_pred HCCCEEEEEECCCCeEEEE
Confidence 5669999999999999876
No 20
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=39.30 E-value=54 Score=28.15 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=36.2
Q ss_pred ccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcC
Q 020683 130 YEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (322)
Q Consensus 130 ~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~ 204 (322)
..-+|.+|++..-.+-| ++|+.|.+..+..+.. ..+++-. +..||+ +|+||++.+.
T Consensus 57 v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d--~v~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYD--VVYGNV--------------SLKGALEKMA 112 (130)
T ss_pred EEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCee--EEEecc--------------cHHHHHHHHH
Confidence 34589999988777777 6888888875554332 3454543 334664 6788877643
No 21
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=35.07 E-value=24 Score=30.81 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=12.9
Q ss_pred CcceEEEeccCCCCc
Q 020683 204 KVSNIVVIGHSACGG 218 (322)
Q Consensus 204 ~Vk~IVV~GHS~CGa 218 (322)
.+.+|.|+||.+||=
T Consensus 2 ~~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGK 16 (188)
T ss_dssp TEEEEEEEESTTSSH
T ss_pred CEEEEEEECCCCCCc
Confidence 357899999999994
No 22
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=34.10 E-value=1.9e+02 Score=27.07 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=40.7
Q ss_pred ChhhHHhhhcCCCCcEEEEeecCCCC----ChhhhcCCC-CCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcce
Q 020683 133 NPALYSELAKGQSPKYMVFACSDSRV----CPSHVLDFQ-PGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSN 207 (322)
Q Consensus 133 ~p~~~~~La~gQ~Pk~lVItCsDSRV----~Pe~ilg~~-pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~ 207 (322)
.++.+++++..++|.=++.-|...+. +.+.++... .+-++++=++- |. ..+ ++|-=....+|++.
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~------dp---~Nl-Gai~Rta~a~G~~~ 123 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGVT------DP---HNL-GACLRSADAAGVHA 123 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCCC------Cc---chH-HHHHHHHHHcCCCE
Confidence 45667888887777666555654332 223333322 22233332111 11 123 34555667899999
Q ss_pred EEEeccCCCC
Q 020683 208 IVVIGHSACG 217 (322)
Q Consensus 208 IVV~GHS~CG 217 (322)
|++.+|+.+.
T Consensus 124 vi~~~~~~~~ 133 (244)
T PRK11181 124 VIVPKDRSAQ 133 (244)
T ss_pred EEECCCCCCC
Confidence 9999887554
No 23
>PRK11440 putative hydrolase; Provisional
Probab=30.96 E-value=92 Score=27.37 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=31.7
Q ss_pred cCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCCccc
Q 020683 164 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (322)
Q Consensus 164 lg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~ 220 (322)
+...+||.++.++--+-... + -|+.-+...|+++|+|+|=+-..-|.
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV~ 136 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGVE 136 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHHH
Confidence 45678898887776554432 2 25556778999999999965544443
No 24
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=30.75 E-value=32 Score=30.05 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=12.2
Q ss_pred cceEEEeccCCCC
Q 020683 205 VSNIVVIGHSACG 217 (322)
Q Consensus 205 Vk~IVV~GHS~CG 217 (322)
+++|+++||++||
T Consensus 2 ~r~i~ivG~~~~G 14 (194)
T cd01891 2 IRNIAIIAHVDHG 14 (194)
T ss_pred ccEEEEEecCCCC
Confidence 6799999999999
No 25
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.63 E-value=1.3e+02 Score=27.10 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHH
Q 020683 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFK 126 (322)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~el~~~~~~~p~~~l~~Ll~GN~rF~ 126 (322)
.+||..+++.-|+++=|..+|. +|...++.+.+-+++.. +.-...+-++++.|....
T Consensus 105 aDsf~K~vaaskr~lPets~La-vA~~vl~~l~~fv~e~~-P~h~~af~eiLepFg~~l 161 (165)
T PF08822_consen 105 ADSFSKMVAASKRVLPETSELA-VAMEVLELLAAFVQERY-PQHLAAFLEILEPFGEEL 161 (165)
T ss_pred HHHHHHHHHHHhhcCchHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHH
Confidence 4566666666667666666665 46666666655555543 333445556666555443
No 26
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=30.61 E-value=2.6e+02 Score=25.41 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=45.3
Q ss_pred EEEEeecCCCCChhhhcC------CCCCceEE-EeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCCccc
Q 020683 148 YMVFACSDSRVCPSHVLD------FQPGEAFV-VRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (322)
Q Consensus 148 ~lVItCsDSRV~Pe~ilg------~~pGE~FV-vRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~ 220 (322)
..++||.=--...+.+|. -++||+++ +-+-||-- .++.+++-|. .+|+..|...|-++ |.++
T Consensus 83 sS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~---------nVl~Ai~~Ak-~~gm~vI~ltG~~G-G~~~ 151 (176)
T COG0279 83 SSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNSK---------NVLKAIEAAK-EKGMTVIALTGKDG-GKLA 151 (176)
T ss_pred cHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCH---------HHHHHHHHHH-HcCCEEEEEecCCC-cccc
Confidence 345677766667777773 36999877 88888863 4788999776 47888888887643 4445
Q ss_pred ccc
Q 020683 221 GLM 223 (322)
Q Consensus 221 Aal 223 (322)
..+
T Consensus 152 ~~~ 154 (176)
T COG0279 152 GLL 154 (176)
T ss_pred ccc
Confidence 433
No 27
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=30.44 E-value=1.7e+02 Score=24.86 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=58.5
Q ss_pred hhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCCcc
Q 020683 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (322)
Q Consensus 140 La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav 219 (322)
+..|-.|...++-+==-|-+...... .....+.++|..+.+.. +...+|..|+..-+--.|+|-|-.|=-++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45688999999988888877655444 55678899999999975 36678889977766678888888776666
Q ss_pred ccccc
Q 020683 220 KGLMS 224 (322)
Q Consensus 220 ~Aal~ 224 (322)
-+.+-
T Consensus 78 Pail~ 82 (121)
T PF04019_consen 78 PAILY 82 (121)
T ss_pred HHHHh
Confidence 55443
No 28
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=29.37 E-value=19 Score=27.98 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=12.8
Q ss_pred EEEEEEEccCceEEE
Q 020683 295 LKGGYYDFVNGSFEL 309 (322)
Q Consensus 295 V~G~vYDi~tG~v~~ 309 (322)
.|||.||+.||++..
T Consensus 66 ~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 66 CHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTEEEETTTSBEEE
T ss_pred CcCCEEeCCCceEec
Confidence 599999999998643
No 29
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=28.33 E-value=35 Score=36.20 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=44.9
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCC------------ceEEE--eccCccCCCCCCccc-chhhHHHHHHHHhcCcceE
Q 020683 144 QSPKYMVFACSDSRVCPSHVLDFQPG------------EAFVV--RNVANIVPPYDQTKY-AGVGAAVEYAVLHLKVSNI 208 (322)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ilg~~pG------------E~FVv--RNaGN~V~~~d~~~~-~~v~aSLEyAV~~L~Vk~I 208 (322)
..|-.+|=.|. .---|||+.|+ ++|+| ||.+--=...+...| .++..+|+....+-|.+.|
T Consensus 215 ~~PLLIVPp~I----NK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG~~~v 290 (560)
T TIGR01839 215 ARPLLVVPPQI----NKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITGSRDL 290 (560)
T ss_pred CCcEEEechhh----hhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcCCCCe
Confidence 46766665554 22446776664 67776 454432211111122 3677888888888999999
Q ss_pred EEeccCCCCccccc
Q 020683 209 VVIGHSACGGIKGL 222 (322)
Q Consensus 209 VV~GHS~CGav~Aa 222 (322)
-++||. -||.-++
T Consensus 291 nl~GyC-~GGtl~a 303 (560)
T TIGR01839 291 NLLGAC-AGGLTCA 303 (560)
T ss_pred eEEEEC-cchHHHH
Confidence 999994 4544433
No 30
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=26.75 E-value=91 Score=30.93 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=31.8
Q ss_pred hhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEecc
Q 020683 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGH 213 (322)
Q Consensus 161 e~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GH 213 (322)
.++-++++|| .||.|.||-. ++.++---+.++|++.|=|+-.
T Consensus 153 ~dfv~L~~GD-~vIQNganS~----------VG~~ViQlaka~GiktinvVRd 194 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG----------VGQAVIQLAKALGIKTINVVRD 194 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH----------HHHHHHHHHHHhCcceEEEeec
Confidence 4567999999 7999999964 5544444567899999887643
No 31
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=26.55 E-value=37 Score=28.66 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=11.4
Q ss_pred ceEEEeccCCCCc
Q 020683 206 SNIVVIGHSACGG 218 (322)
Q Consensus 206 k~IVV~GHS~CGa 218 (322)
++|+++||++||=
T Consensus 1 rni~~vG~~~~GK 13 (179)
T cd01890 1 RNFSIIAHIDHGK 13 (179)
T ss_pred CcEEEEeecCCCH
Confidence 4799999999993
No 32
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=26.32 E-value=58 Score=27.75 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=25.4
Q ss_pred chhhHHHHHHHHhcCcceEEEeccCCCCcccc
Q 020683 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (322)
Q Consensus 190 ~~v~aSLEyAV~~L~Vk~IVV~GHS~CGav~A 221 (322)
....+.+++-.+.||++.|.++|||- ||.-+
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~~ 58 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSM-GGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETH-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECC-ChHHH
Confidence 45668899999999999999999987 55443
No 33
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.28 E-value=40 Score=32.20 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=12.1
Q ss_pred cceEEEeccCCCCc
Q 020683 205 VSNIVVIGHSACGG 218 (322)
Q Consensus 205 Vk~IVV~GHS~CGa 218 (322)
=+-|.|+|||+||=
T Consensus 29 GEfvsilGpSGcGK 42 (248)
T COG1116 29 GEFVAILGPSGCGK 42 (248)
T ss_pred CCEEEEECCCCCCH
Confidence 46789999999994
No 34
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=25.47 E-value=94 Score=25.57 Aligned_cols=73 Identities=22% Similarity=0.202 Sum_probs=36.3
Q ss_pred cccccccccccccCC--CCceEEEeecCCCCCCCcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHhhhhcCch
Q 020683 12 TSVSQAQSSLIKSST--LRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLK 89 (322)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (322)
+..+.+-|-+||.+. ++.-- .--|=+|+|.|- .+.|.+-|.|... .|+. .|.++.+++..
T Consensus 6 A~~taSISELKKNP~~~~~g~P---------VAILNhN~PafY----~Vpa~~yE~m~e~-LeD~--eL~~l~~~R~~-- 67 (97)
T PRK09778 6 AEKSVNITELRKNPAKYFIDQP---------VAVLSNNRPAGY----LLSASAFEALMDM-LAEQ--EEKKPIKARFR-- 67 (97)
T ss_pred hhhhccHHHHhhCHHHHhcCCc---------eEEecCCceeEE----EeCHHHHHHHHHH-HHhH--HHHHHHHHHcC--
Confidence 334445577888543 32222 233458999886 3445444555432 1111 24455555544
Q ss_pred hhHhHhhHHHHHhh
Q 020683 90 PVAAAKVEQITAQL 103 (322)
Q Consensus 90 ~~a~~~~~~~t~el 103 (322)
-.++.++.++++-
T Consensus 68 -~~~~~~~~i~~~~ 80 (97)
T PRK09778 68 -PSAARLEEITRRA 80 (97)
T ss_pred -ccHHHHHHHHHHH
Confidence 2345555555443
No 35
>PRK14432 acylphosphatase; Provisional
Probab=24.52 E-value=55 Score=26.28 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCceEEEE
Q 020683 292 TLALKGGYYDFVNGSFELW 310 (322)
Q Consensus 292 ~L~V~G~vYDi~tG~v~~~ 310 (322)
++.|.||+.+..+|.|+.+
T Consensus 27 ~lgl~G~V~N~~dG~Vei~ 45 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIV 45 (93)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 4669999999999998865
No 36
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=24.11 E-value=30 Score=26.97 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=12.4
Q ss_pred EEEEEEEccCceEE
Q 020683 295 LKGGYYDFVNGSFE 308 (322)
Q Consensus 295 V~G~vYDi~tG~v~ 308 (322)
.|||.||+.||+..
T Consensus 62 ~Hg~~fd~~~G~~~ 75 (98)
T cd03528 62 LHGGRFDLRTGKAL 75 (98)
T ss_pred CcCCEEECCCCccc
Confidence 69999999999864
No 37
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=23.80 E-value=2e+02 Score=27.79 Aligned_cols=67 Identities=22% Similarity=0.190 Sum_probs=36.7
Q ss_pred hcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCccCCCCCCcccchhhHHHHHHHHhcCcceEEEeccCCCC
Q 020683 141 AKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACG 217 (322)
Q Consensus 141 a~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGE~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHS~CG 217 (322)
+.-+.||++|-| ||=|-+.+..+.--=-+|+=|+-++.... -+...|--|+..-|+..+||++ ..=|
T Consensus 78 ag~~dPKimvTT---SR~PSsrL~~FaKelkLvfPNaqr~nRG~------~~~~~lv~a~ra~~~Td~iivH-EhRG 144 (290)
T KOG2781|consen 78 AGEEDPKIMVTT---SRDPSSRLKMFAKELKLVFPNAQRLNRGN------YVVGELVDAARANGVTDLIIVH-EHRG 144 (290)
T ss_pred ccCCCCcEEEEe---CCCchHHHHHHHHhheEeccChhhhcccc------eeHHHHHHHHHHCCCceEEEEe-ccCC
Confidence 556889988776 44444444333222234554554443321 1233566688888988777764 3444
No 38
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=23.70 E-value=73 Score=23.75 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHHHHhcChhHHhhhcCCceEEEEE
Q 020683 274 SLSNLLTYPFVREGLVNKTLALKGG 298 (322)
Q Consensus 274 qv~~L~s~P~V~~~v~~g~L~V~G~ 298 (322)
-|..|.++|-+-+.+++|++.+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3567889999999999999999985
No 39
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=23.11 E-value=45 Score=27.67 Aligned_cols=12 Identities=17% Similarity=0.628 Sum_probs=10.7
Q ss_pred eEEEeccCCCCc
Q 020683 207 NIVVIGHSACGG 218 (322)
Q Consensus 207 ~IVV~GHS~CGa 218 (322)
+|+|+||.+||=
T Consensus 1 ~i~~vG~~~~GK 12 (167)
T cd04160 1 SVLILGLDNAGK 12 (167)
T ss_pred CEEEEecCCCCH
Confidence 489999999995
No 40
>PRK14440 acylphosphatase; Provisional
Probab=22.94 E-value=65 Score=25.66 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCceEEEE
Q 020683 292 TLALKGGYYDFVNGSFELW 310 (322)
Q Consensus 292 ~L~V~G~vYDi~tG~v~~~ 310 (322)
++.|.||+.+..+|.|+.+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 4669999999999998864
No 41
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=22.76 E-value=28 Score=27.16 Aligned_cols=14 Identities=21% Similarity=0.620 Sum_probs=12.3
Q ss_pred EEEEEEEccCceEE
Q 020683 295 LKGGYYDFVNGSFE 308 (322)
Q Consensus 295 V~G~vYDi~tG~v~ 308 (322)
.|||.||+.||++.
T Consensus 61 ~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 61 WHGACFNLRTGDIE 74 (95)
T ss_pred CCCCEEECCCCcCc
Confidence 69999999999754
No 42
>PRK14430 acylphosphatase; Provisional
Probab=22.60 E-value=63 Score=25.85 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.1
Q ss_pred ceEEEEEEEEccCceEEEE
Q 020683 292 TLALKGGYYDFVNGSFELW 310 (322)
Q Consensus 292 ~L~V~G~vYDi~tG~v~~~ 310 (322)
++.|.||+.+..+|.|+.+
T Consensus 29 ~lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVM 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 4669999999999998754
No 43
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=22.44 E-value=66 Score=28.91 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=32.3
Q ss_pred ccceeecccccccccccccCCCCceEEEeecCC-CCCCCc------ccCCccc---cCCCcccCcchhhHhh
Q 020683 6 INNWCLTSVSQAQSSLIKSSTLRPSIVARLNSP-ASPPSL------IRNEPVF---AAPAPIINPNWREDMA 67 (322)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~ 67 (322)
-|-..++|.||.++...--.+..|.+.-.-.++ ..+|.. ---+|.- --+.|||+|.-++.|+
T Consensus 77 s~rsSlsS~SP~~SP~q~~~~~~~~~sl~~~s~~~~~p~~~~~~~~klhqpsa~R~RnaIpIVNP~Tgm~vs 148 (165)
T PF14618_consen 77 SNRSSLSSNSPSSSPTQHQIQPTPSFSLSSASPPFQPPRYTQQNNLKLHQPSAPRTRNAIPIVNPSTGMRVS 148 (165)
T ss_pred cCccccccCCCCCCccccccccCCCcccCCCCCCcCCCcccccccccccCCccccccCccceeCCCCCCccC
Confidence 445788888998777663233334333222211 112332 1122211 2368999999777665
No 44
>PRK14423 acylphosphatase; Provisional
Probab=22.42 E-value=77 Score=25.27 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCceEEEE
Q 020683 292 TLALKGGYYDFVNGSFELW 310 (322)
Q Consensus 292 ~L~V~G~vYDi~tG~v~~~ 310 (322)
++.|.||+.+..+|.|+.+
T Consensus 30 ~lgl~G~V~N~~dG~Vei~ 48 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAV 48 (92)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 5679999999999998864
No 45
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=21.91 E-value=50 Score=29.47 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.3
Q ss_pred ceEEEeccCCCCc
Q 020683 206 SNIVVIGHSACGG 218 (322)
Q Consensus 206 k~IVV~GHS~CGa 218 (322)
++|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 4799999999994
No 46
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=21.48 E-value=45 Score=24.14 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.0
Q ss_pred EEEEEEccCceEE
Q 020683 296 KGGYYDFVNGSFE 308 (322)
Q Consensus 296 ~G~vYDi~tG~v~ 308 (322)
-|.-||++||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4889999999874
No 47
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.10 E-value=1.6e+02 Score=22.95 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHhh
Q 020683 66 MANQSYEEAIEALKKLLK 83 (322)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~ 83 (322)
|...+||+|+.+|.++++
T Consensus 1 m~~~~fEeal~~LE~IV~ 18 (75)
T PRK14066 1 MAVEKFETALKKLEEVVK 18 (75)
T ss_pred CccccHHHHHHHHHHHHH
Confidence 667789999998877765
No 48
>PRK14445 acylphosphatase; Provisional
Probab=20.98 E-value=87 Score=24.85 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCceEEEE
Q 020683 292 TLALKGGYYDFVNGSFELW 310 (322)
Q Consensus 292 ~L~V~G~vYDi~tG~v~~~ 310 (322)
++.|.||+.+..+|.|+..
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIE 47 (91)
T ss_pred hCCCEEEEEECCCCeEEEE
Confidence 5679999999999988754
No 49
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=20.96 E-value=63 Score=28.20 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=13.6
Q ss_pred cCcceEEEeccCCCCc
Q 020683 203 LKVSNIVVIGHSACGG 218 (322)
Q Consensus 203 L~Vk~IVV~GHS~CGa 218 (322)
-++..|+|+||.+||=
T Consensus 39 ~~~~~I~iiG~~g~GK 54 (204)
T cd01878 39 SGIPTVALVGYTNAGK 54 (204)
T ss_pred cCCCeEEEECCCCCCH
Confidence 3468999999999994
No 50
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=20.83 E-value=4.3e+02 Score=25.92 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=18.2
Q ss_pred CChhhHHhhhcCCCCcEEEEeecCCCCC
Q 020683 132 KNPALYSELAKGQSPKYMVFACSDSRVC 159 (322)
Q Consensus 132 ~~p~~~~~La~gQ~Pk~lVItCsDSRV~ 159 (322)
++++.|..+.+.=.=.-+.|+-+|||=.
T Consensus 175 kD~erY~~lIkkLGLRkv~f~~~~~~~~ 202 (302)
T PTZ00119 175 TDFELYKHTCNLLKIKCILFAIPDSRDR 202 (302)
T ss_pred cCHHHHHHHHHHhCCceEEeecccccCh
Confidence 4566666665444456688888888844
No 51
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=20.72 E-value=1.1e+02 Score=24.81 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=22.6
Q ss_pred hhHHHHHHHHhcCcceEEEeccCCCCccccc
Q 020683 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (322)
Q Consensus 192 v~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa 222 (322)
+...|.-.+...+-..|+|+|||-=|++..+
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l 80 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSLGGALASL 80 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccchHHHHHHH
Confidence 4455555666666789999999988877654
No 52
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=20.26 E-value=65 Score=30.46 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=12.5
Q ss_pred cceEEEeccCCCCc
Q 020683 205 VSNIVVIGHSACGG 218 (322)
Q Consensus 205 Vk~IVV~GHS~CGa 218 (322)
.++|.|+||.+||=
T Consensus 2 ~Rni~ivGh~~~GK 15 (267)
T cd04169 2 RRTFAIISHPDAGK 15 (267)
T ss_pred ccEEEEEcCCCCCH
Confidence 57999999999994
Done!