BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020685
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 480 bits (1235), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/322 (73%), Positives = 269/322 (83%), Gaps = 1/322 (0%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMATAL+VRVPE L D + +ELR
Sbjct: 28 MVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRV 87
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN VMGNK ++VLAGDFLLSRAC AL
Sbjct: 88 RQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNK-MSVLAGDFLLSRACGAL 146
Query: 121 ASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
A+LKN GETM++T+S++QR SMDYYMQKTYYKTASLISNSCKA+A
Sbjct: 147 AALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVA 206
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGTSASLGKGSLSDIRHG+ITAPILFA
Sbjct: 207 VLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFA 266
Query: 241 MEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENND 300
MEEFPQLR VV+Q +D NVDIALEYLGKS+GIQ+ REL I SLPE ++
Sbjct: 267 MEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDN 326
Query: 301 EDVTKSRRALLDLTHRVITRNK 322
EDV +SRRAL+DLTHRVITRNK
Sbjct: 327 EDVKRSRRALIDLTHRVITRNK 348
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 476 bits (1225), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/322 (72%), Positives = 266/322 (82%), Gaps = 1/322 (0%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMATAL+VRVPE L D + +ELR
Sbjct: 28 MVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRV 87
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN VMGNK ++VLAGDFLLSRAC AL
Sbjct: 88 RQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNK-MSVLAGDFLLSRACGAL 146
Query: 121 ASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
A+LKN GETM++T+S+ R SMDYYMQKTYYKTASLISNSCKA+A
Sbjct: 147 AALKNTEVVALLATAVEHLVTGETMEITSSTAARYSMDYYMQKTYYKTASLISNSCKAVA 206
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGTSASLGKGSLSDIRHG+ITAPILFA
Sbjct: 207 VLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFA 266
Query: 241 MEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENND 300
MEEFPQLR VV+Q D NVDIALEYLGKS+GIQ+ REL I SLPE ++
Sbjct: 267 MEEFPQLREVVDQVAADPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDN 326
Query: 301 EDVTKSRRALLDLTHRVITRNK 322
EDV +SRRAL+DLTHRVITRNK
Sbjct: 327 EDVKRSRRALIDLTHRVITRNK 348
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 148/325 (45%), Gaps = 31/325 (9%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
M P++ + + G GKR RP +L +A A V P H
Sbjct: 33 MSSEHAPRIPEVTAHLIEAG--GKRLRP--MLTLAAARLVGYGGPFH------------- 75
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
+A E IH A+LLHDDV+D++ RRG + N + NK +VL GD+L +R+ +
Sbjct: 76 --VHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKS-SVLVGDYLFARSFQLM 132
Query: 121 ASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
N GE +Q+T + + + D Y++ KTA+L S + +
Sbjct: 133 TDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGG 192
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
++ G + FDYG LG+A+Q++DD+LD+ G SA +GK + D R +T P++ A
Sbjct: 193 IIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKA 252
Query: 241 M-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSL 295
+ E + V+E+G + +++ A+ + K ++ TR + L
Sbjct: 253 VALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKL 312
Query: 296 PENNDEDVTKSRRALLDLTHRVITR 320
P++ R+ L DL V+ R
Sbjct: 313 PDH------PLRQMLDDLADYVVER 331
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 62
VA +P LA E+ G GKR RP L+ +A A LA
Sbjct: 50 VAIIPALA---EHLIAAG--GKRLRP--LMTVAAA---------------RLAGADNDHF 87
Query: 63 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALAS 122
Q +A E IH A+LLHDDV+D + RRG + + + G +VL GDFL +RA +
Sbjct: 88 QKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGG-AQSVLVGDFLFARAFELMVE 146
Query: 123 LKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 182
+ GE +Q+ S D S Y++ KTA L + + +A A+
Sbjct: 147 TNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVS 206
Query: 183 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241
AG + DYG NLGLA+QL DD LD+ G + +LGK + D R G T P+L A+
Sbjct: 207 AGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAI 265
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 118/233 (50%), Gaps = 20/233 (8%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
+ AA + G GKR RP +LL L+D +D L +RT A
Sbjct: 32 INKAAHHILSSG--GKRVRPMFVLLSGF---------LNDTQKDDL---IRT-----AVS 72
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXX 128
E++H+ASL+HDD +D++D RRG S++ +K A+ G FLL+RA +A++ N
Sbjct: 73 LELVHMASLVHDDYIDNSDMRRGNTSVHIAF-DKDTAIRTGHFLLARALQNIATINNSKF 131
Query: 129 XXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 188
GE QM + S Y+++ KTA LI SC AL + +
Sbjct: 132 HQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQ 191
Query: 189 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241
+G +G++YQ+IDD+LD+T A+LGK SDIR+G IT P++ A+
Sbjct: 192 STYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAI 244
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 141/300 (47%), Gaps = 34/300 (11%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKRFRP + L+A+ + PL + V A A + E+ H+A+L HDDV
Sbjct: 74 GKRFRP-MFALLASEFGEK---PLSENVIKA------------AVVVEITHLATLYHDDV 117
Query: 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXG 142
+D+A RRG+ S N N V A+LAGD LL+ A ++ L G
Sbjct: 118 MDEASMRRGVPSANARWDNSV-AILAGDILLAHASGLMSQLGTDTVAHFAETF------G 170
Query: 143 E--TMQMTTSSDQRCS--MDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGK 198
E T QM + R + +++Y KT LI+++ A+ AG E ++G
Sbjct: 171 ELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGA 230
Query: 199 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-EEFP---QLRTVVEQG 254
+G+ +Q++DD++D + GK +D+R G+ T P+L+A+ E+ P +LR ++
Sbjct: 231 AVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGP 290
Query: 255 FEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLT 314
ED V+ LE L +S G Q + +D LP D V ++ R L T
Sbjct: 291 LEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLP---DSTVKEALRNLATFT 347
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK RP L +T N P L G A E++HV +L+HDDV
Sbjct: 55 GKLLRPGYFYLFSTFGNAATPAQLQAG----------------AAAIEILHVGTLIHDDV 98
Query: 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRAC-VALASLKNXXXXXXXXXXXXXXXX 141
+DD+ TRRG+ ++ G + A+ AGDF+ + L S +
Sbjct: 99 IDDSPTRRGVRTIQMTYGQRN-AIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQ 157
Query: 142 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLG 201
GE QM + + ++D Y+ + KTA L + SC A LAG V D G +G
Sbjct: 158 GELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIG 217
Query: 202 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 232
AYQ++DD+LD+ G K L D+R G+
Sbjct: 218 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGV 248
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK RP L +T N P L G A E++HV +L+HDDV
Sbjct: 48 GKLLRPGYFYLFSTFGNAATPAQLQAG----------------AAAIEILHVGTLIHDDV 91
Query: 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRAC-VALASLKNXXXXXXXXXXXXXXXX 141
+DD+ TRRG+ ++ G + A+ AGDF+ + L S +
Sbjct: 92 IDDSPTRRGVRTIQMTYGQRN-AIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQ 150
Query: 142 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLG 201
GE QM + + ++D Y+ + KTA L + SC A LAG V D G +G
Sbjct: 151 GELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIG 210
Query: 202 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 232
AYQ++DD+LD+ G K L D+R G+
Sbjct: 211 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGV 241
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKAR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAEHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEAGNNKAR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEAGNNKAR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 5/179 (2%)
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXX 127
I EMI ASLLHDDV+D A RR + S+N + GN AV+ GD S+A L+ +
Sbjct: 65 IVEMIQTASLLHDDVIDKATMRRKLPSINALFGN-FNAVMLGDVFYSKAFFELSKM-GEL 122
Query: 128 XXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 187
GE + Y + KTA I S K++A+L + A
Sbjct: 123 IAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDA 182
Query: 188 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQ 246
++ D+G N G+A+Q+IDD+LD T + +LGK + SD + G T P L E+ Q
Sbjct: 183 KIYA---DFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQ 238
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E+ H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELYHLASLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ SLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLYSLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+A LLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLAFLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A RG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFARGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ASLLHDDV+D A R G ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRAGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXX 129
E++H+ LLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLYFLLHDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 130 XXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 189
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 130 RAFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 188
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 249
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R
Sbjct: 189 ---LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 250 VVEQ 253
+ E
Sbjct: 245 MFEN 248
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 19/219 (8%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK RP ++LL+A P LH V E++H ASL+HDDV
Sbjct: 47 GKMMRPILVLLVARLYGAVTPATLHAAVS-----------------LELLHTASLVHDDV 89
Query: 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXG 142
+D++ RRG S+N + NKV +VLAGD+LL+ + V N G
Sbjct: 90 VDESTERRGQLSVNAIFNNKV-SVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEG 148
Query: 143 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 202
E +Q++ S+ S + Y KTA+L + +A AL E A G+ +G+
Sbjct: 149 ELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGI 208
Query: 203 AYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241
+Q+ DD+ D+ S +GK + +D+ G +T P L+A+
Sbjct: 209 CFQIKDDIFDYFD-SKKIGKPTGNDMLEGKLTLPALYAL 246
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 25/228 (10%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L AA ++ G GKR RP V+L A+ +PL + A+A EL
Sbjct: 34 LYEAARHYPLAG--GKRVRPFVVLTSTEAVG---GDPLR-AIYPAVAIEL---------- 77
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL----- 123
IH SL+HDD++D +TRRG +++ + G +A+LAGD L S+A A+A
Sbjct: 78 ---IHNYSLVHDDIMDMDETRRGKPTVHRIWGVN-MAILAGDLLFSKAFEAVARAEIPPE 133
Query: 124 KNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLA 183
K G+ + +++ YM+ KT +L S K ++
Sbjct: 134 KKARVLEVIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIG 193
Query: 184 GQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 231
E +G+N+G+A+Q+ DDVLD LGK SDIR G
Sbjct: 194 TDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKG 241
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
Query: 79 HDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXX 138
HDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 80 HDDVIDGARFRRGKETINFMYGDKA-AVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGK 138
Query: 139 XXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGK 198
E ++ S + + + Y++ K+ +L + + ALL G+ E ++ G
Sbjct: 139 MSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED---LYNLGV 194
Query: 199 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQ 253
+G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R + E
Sbjct: 195 TIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFEN 248
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 22/213 (10%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+ + E P L E+ G GKR RP +LLL++ + + +
Sbjct: 22 ITLIEDPGLKKXVEHVCHSG--GKRIRPIILLLVSE-----------------ICSGSYS 62
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
R A E H ASL+HDD+LD RR + S G A+L GD+L++++ +A
Sbjct: 63 RSLNAALAVEXXHSASLIHDDLLDQGLVRRNLPSAPEKFGPSG-ALLCGDYLIAKS-IAF 120
Query: 121 ASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
S GE + + + DY+ + Y KTASL + S A
Sbjct: 121 ISPYGEKVIQDFGKAGXDXAEGEVLDLKLEDESFGENDYF-KCIYKKTASLFAISASIGA 179
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 213
G E+A +G LG AYQ++DD+L+F
Sbjct: 180 YTGGAEEELAERFSHFGNALGTAYQIVDDILEF 212
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 104/244 (42%), Gaps = 30/244 (12%)
Query: 7 PKLASAAEYFFKM---------GVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 57
P + + A Y F G GK RP + +L A PE GV A+A E
Sbjct: 29 PPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGA-APEV---GVPGAVAVE 84
Query: 58 LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA- 116
L +H SLLHDD++D + RR ++ V G A+L GD L + A
Sbjct: 85 L-------------VHNFSLLHDDLMDGDEQRRHRDTVWKVHG-PAQAILVGDALFALAN 130
Query: 117 --CVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 174
+ L +++ G+ ++ R S++ ++ KT +L++
Sbjct: 131 EVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLAC 190
Query: 175 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234
+ A+L G A YG +LGLA+Q +DD+L G + GK + SD+R +
Sbjct: 191 ASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKS 250
Query: 235 APIL 238
P++
Sbjct: 251 LPVV 254
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 69 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALAS---- 122
EMIH SL+HDD+ +D+ D RRG + + G V AVLAGD LLS A +A+
Sbjct: 72 VEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESV-AVLAGDALLSFAFEHVAAATKG 130
Query: 123 -----LKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCK 177
+ G+ + + + +D+ ++KTA+L+ S
Sbjct: 131 APPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHKTAALLQGSVV 190
Query: 178 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 237
A+L G E + +GL +Q++DD+LD T +S LGK + D+ T P
Sbjct: 191 LGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTTYPK 250
Query: 238 LFAMEE 243
L +E+
Sbjct: 251 LIGVEK 256
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 35/230 (15%)
Query: 16 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 75
+++ GKR RP LL +A A +A++ + R A I E+IH
Sbjct: 38 LYQVKTGGKRLRP--LLTLAAA--------------EAVSGQWRPALPAAA-IVELIHNY 80
Query: 76 SLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL---KNXXXXXXX 132
SL++DD++D D RRG+ ++ G+ A+L G + R + A L K
Sbjct: 81 SLIYDDIIDRGDVRRGLPTVRKAFGDNA-AILVG--IWYREAIEEAVLDTPKPTLFAKEV 137
Query: 133 XXXXXXXXXGETMQMTTSSDQR------------CSMDYYMQKTYYKTASLISNSCKAIA 180
GE + + + R ++D Y++ KT +LI+ + K
Sbjct: 138 AEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGV 197
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 230
L +A A+++G G+A+Q+IDDVLD G GK DI+
Sbjct: 198 LSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKE 247
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 103/241 (42%), Gaps = 36/241 (14%)
Query: 17 FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVAS 76
+ + V GKR RP ++LL + L A EMIH S
Sbjct: 68 YSINVGGKRIRPILMLLSYYIYKSDYKKIL-----------------TPAMAIEMIHTYS 110
Query: 77 LLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALA--SLKNXXXXXXX 132
L+HDD+ +D+ D RRG + + V G + +AVLAGD LL+ A L SL+
Sbjct: 111 LIHDDLPCMDNDDLRRGKPTNHKVFG-EAIAVLAGDALLNEAMKILVDYSLEEGKSALKA 169
Query: 133 XXXXXXXX------XGETMQMTTSSDQRCS---MDYYMQKTYYKTASLISNSCKAIALLA 183
G+ + + + S +DY K KT LI S + A+LA
Sbjct: 170 TKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLK---KTGELIKASIMSGAVLA 226
Query: 184 GQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 242
+ +E I + +G LGLA+Q+ DD+LD G + LGK D +F +E
Sbjct: 227 -EASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLE 285
Query: 243 E 243
E
Sbjct: 286 E 286
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 105/249 (42%), Gaps = 30/249 (12%)
Query: 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 63
A +L +A Y G GKR RP +L A+A V L D AL
Sbjct: 28 APANQLHNAMRYSLFNG--GKRIRP--MLTYASAQLVGDISSLTDASAAAL--------- 74
Query: 64 CIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALA 121
E IH SL+HDD+ +D+ + RRG + + + ++ A+LAGD L + A L+
Sbjct: 75 ------ESIHAYSLIHDDLPAMDNDELRRGKPTCH-IQFDEATAILAGDALQTFAFELLS 127
Query: 122 SLKNXXXXXXXXXXXXXXXXGETMQMTT-------SSDQRCSMDYYMQKTYYKTASLISN 174
+ + M T S ++ S+ Q +KT +LI
Sbjct: 128 NPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKA 187
Query: 175 SCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 233
S + AL GQ + D Y +GLA+Q+ DD++D T + +LGK SD
Sbjct: 188 SVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKA 247
Query: 234 TAPILFAME 242
T P L ++
Sbjct: 248 TYPKLLGLD 256
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 30/237 (12%)
Query: 6 VPKLASAAEYF-----FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+PK+ S +F + GK FR +LL + + PE L+ ++ ALA E
Sbjct: 17 LPKVESFHPFFNEALALXLKAGGKHFRAQLLL---SVVQSNKPELLNQALDVALALE--- 70
Query: 61 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACV 118
IH SL+HDD+ D+AD RRGI +L+ ++ A+L GD L + A +
Sbjct: 71 ----------FIHTYSLIHDDLPAXDNADFRRGIPTLHKSY-DETTAILVGDALNTEAFL 119
Query: 119 AL--ASLKNXXXXXXXXXXXXXX-XXGETMQMTTS---SDQRCSMDYYMQKTYYKTASLI 172
L A LK+ G + D+R S++ +KTA LI
Sbjct: 120 VLSHAHLKDEIKIKLIKTLAFNAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLI 179
Query: 173 SNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 229
+ + K + E + + G LGL +Q+ DD++D T + GK + +DI
Sbjct: 180 AAALKXGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIH 236
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 21 VEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD 80
V G R RP ++L + L V E L D +A E+ H ASL+HD
Sbjct: 44 VGGXRIRPLLVLTLGEDLGVE-EEXLLD----------------VAVAVELFHTASLIHD 86
Query: 81 DV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXX 138
D+ +D+AD RRG S + G + A+LAGD L A ++ + N
Sbjct: 87 DLPPIDNADFRRGXPSCHRTYGEDI-ALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYX 145
Query: 139 XXXGETMQMTTSSDQRCSMDYYMQKTY-YKTASLISNSCKAIALLAGQTAEVAILAFDYG 197
GE M + +++ Y + T +L + A +L G L G
Sbjct: 146 LLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXL---LG 202
Query: 198 KNLGLAYQLIDDVLDFTGTSASLGK 222
+ G+A+Q+ DD+ D G+ +GK
Sbjct: 203 EXFGVAFQIYDDLXDILGSFEKVGK 227
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 97/226 (42%), Gaps = 27/226 (11%)
Query: 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 64
E +L A Y G GKR RP ++L A E+ T+
Sbjct: 34 ENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQ----------------KEMETQDYQ 75
Query: 65 IAEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKVLAVLAGDFLLSRACVALAS 122
+A EMIH SL+HDD+ D RRG + + V G + A+LAGD LL+ A L+
Sbjct: 76 VAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFG-EATAILAGDGLLTGAFQLLSL 134
Query: 123 LKNXXXXXXXXXXXXXXXXGE----TMQMTTSSDQRCSMDYYMQKTYY--KTASLISNSC 176
+ G + QM ++ S+ + KT +LI +
Sbjct: 135 SQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFAL 194
Query: 177 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 222
A +LA QT EV L + + GLA+Q+ DD+LD T T A LGK
Sbjct: 195 IAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGK 240
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 35/259 (13%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
++ P++ SA Y G GKR RP ++ L ++V GV D +A L
Sbjct: 31 IIIPAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVD------QGVLDIIAAAL--- 79
Query: 62 QQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVA 119
E+ H SL+HDD+ +D+ D RRG S + ++ A+L GD + + A
Sbjct: 80 --------ELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAF-DEATAILVGDGMQALAIEV 130
Query: 120 L----------ASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTA 169
L A + G+++ ++ + + + + KT
Sbjct: 131 LLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTG 190
Query: 170 SLISNSCKAIALLAGQTAEVAILAF--DYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 227
LI +C + L A I + YGK++GL +Q+ DD LD + LGKG SD
Sbjct: 191 KLIL-ACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSD 249
Query: 228 IRHGIITAPILFAMEEFPQ 246
+ T LF ++ +
Sbjct: 250 QANQKTTFATLFNKQQLEE 268
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 30/239 (12%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVR-VPEPLHDGVEDALATELRTRQQCIA 66
+LA+A Y G GKR RP + + +L V VPE R + +A
Sbjct: 35 QLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFVPE--------------RHWRPVMA 78
Query: 67 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 124
E++H SL+HDD+ +D+ RRG + N V +A LAGD LL+ A L +
Sbjct: 79 --LELLHTYSLIHDDLPAMDNDALRRGEPT-NHVKFGAGMATLAGDGLLTLAFQWLTATD 135
Query: 125 NXXXXXXXXXXXXXXXXGETM----QMTTSSDQRCSMDYYMQKTYYK--TASLISNSCKA 178
G + Q + ++ + +K T +L+ + +A
Sbjct: 136 LPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQA 195
Query: 179 IALLAGQTAEVAILAF-DYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 236
L+ GQ E A+ + GLA+Q+ DD+LD + A +GK + D T P
Sbjct: 196 -GLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYP 253
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 35/215 (16%)
Query: 70 EMIHVASLLHDDVLDDADTRRGIGSL----------NFVMGNK-----VLAVLAGDFLLS 114
E I +L+HDD++D +DTRRG ++ N G+ +++LAGD L
Sbjct: 98 EFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDXALV 157
Query: 115 RA----------CVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKT 164
A ALA ++ G+ + + S S++
Sbjct: 158 WAEDXLQDSGLSAEALARTRDAWRGXRTEVIG-----GQLLDIYLESHANESVELADSVN 212
Query: 165 YYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 223
+KTA+ I+ A +AG + ++ YG ++G+A+QL DD+L G A GK
Sbjct: 213 RFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKP 272
Query: 224 SLSDIRHGIITAPILFAME----EFPQLRTVVEQG 254
+ DIR G T + A++ + P+ T + G
Sbjct: 273 AGDDIREGKRTVLLALALQRADKQSPEAATAIRAG 307
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 96/224 (42%), Gaps = 34/224 (15%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
K+ A Y G GKR RP VL + A L G E++LA A
Sbjct: 39 KIHEAXRYSLLAG--GKRVRP-VLCIAACELV---------GGEESLAXP-------AAC 79
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 125
E IH SL+HDD+ D+ D RRG + + V G V AVLAGD LLS A LAS +
Sbjct: 80 AVEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDV-AVLAGDALLSFAFEHLASATS 138
Query: 126 XXXXXXXXXXXXXX----------XXGETMQMTTSS--DQRCSMDYYMQKTYYKTASLIS 173
G+ + +++ +++ +KTA+L+
Sbjct: 139 SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLE 198
Query: 174 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 217
S ++ G + E + + +GL +Q++DD+LD T +S
Sbjct: 199 ASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS 242
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 32/246 (13%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L A Y +G GKR RP ++ + L + ++L T A
Sbjct: 38 LIEAMRYGLLLG--GKRARPYLVYITGQMLGCEL-------------SDLDTP----ASA 78
Query: 69 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALA----S 122
E IH SL+HDD+ +DD + RRG + + + ++ A+L GD L + A LA S
Sbjct: 79 VECIHAYSLIHDDLPAMDDDELRRGKPTCH-IQFDEATAILTGDALQTLAFTILAEGDLS 137
Query: 123 LKNXXXXXXXXXXXXXXXXGETMQMTTSSD-----QRCSMDYYMQKTYYKTASLISNSCK 177
+ M + + D + S++ KT +L+ + +
Sbjct: 138 AAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIR 197
Query: 178 AIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 236
AL AG+ + D Y + +GLA+Q+ DD+LD + +LGK SD T P
Sbjct: 198 LGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYP 257
Query: 237 ILFAME 242
L +E
Sbjct: 258 ALLGLE 263
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 31/226 (13%)
Query: 16 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 75
+ + GKR RP +LLL +LN G++ A+A E MIH
Sbjct: 35 LYSLNAGGKRIRPVLLLLTLDSLNTEYEL----GMKSAIALE-------------MIHTY 77
Query: 76 SLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALAS-------LKNX 126
SL+HDD+ +D+ D RRG + + V G + A+LAGD LL++A ++S +K
Sbjct: 78 SLIHDDLPAMDNDDYRRGKLTNHKVYG-EWTAILAGDALLTKAFELISSDDRLTDEVKIK 136
Query: 127 XXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-- 184
G M S Q ++ KT +L++ + + A +A
Sbjct: 137 VLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVD 196
Query: 185 QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 230
T + + ++ Y +LG+ +Q+ DD+LD G A LGK SD+ +
Sbjct: 197 DTTKEHLESYSY--HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLEN 240
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 15/191 (7%)
Query: 66 AEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL 123
A E IH SL+HDD+ D RRG+ + + G + A+LAGD L + A L+
Sbjct: 94 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFG-EANAILAGDALQTLAFSILSDA 152
Query: 124 K----------NXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLIS 173
+ G+ + + + +D + +KT +LI
Sbjct: 153 NMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG-KHVPLDALERIHRHKTGALIR 211
Query: 174 NSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 232
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G
Sbjct: 212 AAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGK 271
Query: 233 ITAPILFAMEE 243
T P L +E+
Sbjct: 272 STYPALLGLEQ 282
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 15/191 (7%)
Query: 66 AEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL 123
A E IH SL+HDD+ D RRG+ + + G + A+LAGD L + A L+
Sbjct: 71 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFG-EANAILAGDALQTLAFSILSDA 129
Query: 124 K----------NXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLIS 173
+ G+ + + + +D + +KT +LI
Sbjct: 130 DMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG-KHVPLDALERIHRHKTGALIR 188
Query: 174 NSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 232
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G
Sbjct: 189 AAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGK 248
Query: 233 ITAPILFAMEE 243
T P L +E+
Sbjct: 249 STYPALLGLEQ 259
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 15/191 (7%)
Query: 66 AEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL 123
A E IH SL+HDD+ D RRG+ + + G + A+LAGD L + A L+
Sbjct: 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFG-EANAILAGDALQTLAFSILSDA 128
Query: 124 K----------NXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLIS 173
+ G+ + + + +D + +KT +LI
Sbjct: 129 DMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG-KHVPLDALERIHRHKTGALIR 187
Query: 174 NSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 232
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G
Sbjct: 188 AAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGK 247
Query: 233 ITAPILFAMEE 243
T P L +E+
Sbjct: 248 STYPALLGLEQ 258
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 70 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA---CV--ALAS 122
E +H SL+HDD+ +D+ D RRG+ +++ + AVLAGD L + A C L S
Sbjct: 72 EALHAYSLVHDDMPCMDNDDLRRGLPTVHKKW-DDATAVLAGDALQTLAFELCTDPVLGS 130
Query: 123 LKNXXXXXXXXXXXXXXXX---GETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKA 178
+N G+ + + + ++D ++ KT +LIS + +A
Sbjct: 131 AENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQA 190
Query: 179 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 222
A+LAG A+ L Y LGLA+Q+ DD+LD G + GK
Sbjct: 191 GAILAG--ADRGPLTA-YATALGLAFQIADDILDVEGNEEAAGK 231
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Query: 66 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 125
A I E++HV SLL DDV+D D RRGI + + G+ A++A D+L++ + +L
Sbjct: 74 AAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDG-RAIVASDWLIAESIKMAVNL-G 131
Query: 126 XXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 185
G+ + + D+ +KTA LI + ++ G+
Sbjct: 132 ADVVTYLADVAQRLSVGQALDLEGERDKAAE---------FKTAPLIEAALVMPLVILGR 182
Query: 186 TAEVAILAFDYGKNLGLAYQLIDDVLD 212
E+ A G LG+ YQ DD D
Sbjct: 183 R-ELIETAKKLGTKLGILYQYSDDYSD 208
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 26/192 (13%)
Query: 22 EGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81
+GKRFR T+ + AL + D ALA E+ +H ASL DD
Sbjct: 48 DGKRFRGTLNMFFTVALG----GDIKDSYGGALAIEI-------------LHSASLALDD 90
Query: 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXX 141
++D TRRG + V GN+ + + ++L+ A + +
Sbjct: 91 IVDLDATRRGDKAAWVVYGNRKV-IFITNYLIPTALRIIQTSYGDDALNTSIELEKDTSV 149
Query: 142 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLG 201
G M +SD Y++ KT SL S ++ A + D GK LG
Sbjct: 150 GALRDMYDNSD-------YIRTIELKTGSLFKLST-VLSAYASKHYNTKQQMLDVGKYLG 201
Query: 202 LAYQLIDDVLDF 213
+ YQ+IDD +D+
Sbjct: 202 IIYQVIDDFVDY 213
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 17/224 (7%)
Query: 63 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVL-AGDFLLSRACVALA 121
Q I E+TEM+H ASLL DD+ D++ RRG + + G + +V+ + +++ +
Sbjct: 48 QIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYG--IPSVINSANYVYFLGLEKVL 105
Query: 122 SLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRC-SMDYYMQKTYYKTASLISNSCKAIA 180
+L + G+ + + + C + + Y KT L + +
Sbjct: 106 TLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQ 165
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
L + ++ L LGL +Q+ DD + S K D+ G + P + A
Sbjct: 166 LFSDYKEDLKPLL----NTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHA 221
Query: 241 MEEFP---QLRTVVEQGFEDSSNVDI---ALEYLGKSRGIQKTR 278
+ P Q++ ++ Q E N+DI + YL + TR
Sbjct: 222 IWSRPESTQVQNILRQRTE---NIDIKKYCVHYLEDVGSFEYTR 262
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 167 KTASLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSL 225
KT +L+ +C+A A++AG AE L +G+ +GL++QL DD+LD T +A++GK +
Sbjct: 221 KTGALLRFACEAGAIIAGSNQAERQRLRL-FGEKIGLSFQLADDLLDLTADAATMGKATG 279
Query: 226 SDIRHG 231
D G
Sbjct: 280 KDAARG 285
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 26/192 (13%)
Query: 22 EGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81
+GKRFR T+ + AL + D ALA E+ +H ASL D
Sbjct: 48 DGKRFRGTLNMFFTVALG----GDIKDSYGGALAIEI-------------LHSASLALCD 90
Query: 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXX 141
++D TRRG + V GN+ + + ++L+ A + +
Sbjct: 91 IVDLDATRRGDKAAWVVYGNRKV-IFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSV 149
Query: 142 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLG 201
G M +SD Y++ KT SL S ++ A + D GK LG
Sbjct: 150 GALRDMYDNSD-------YIRTIELKTGSLFKLST-VLSAYASKHYNTKQQMLDVGKYLG 201
Query: 202 LAYQLIDDVLDF 213
+ YQ+IDD +D+
Sbjct: 202 IIYQVIDDFVDY 213
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 37/232 (15%)
Query: 7 PKLASAAEYFFKMGVEG-KRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 65
P L A FF+M + G KRFRP + L + AL G +D + +T I
Sbjct: 41 PYLEKA---FFEMVLNGGKRFRPKLFLAVLCAL---------VGQKDY--SNQQTEYFKI 86
Query: 66 AEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL 123
A E +H SL+HDD+ +D+A RR +L+ ++ AVL GD L+ L S
Sbjct: 87 ALSIECLHTYSLIHDDLPCMDNAALRRNHPTLH-AKYDETTAVLIGD-ALNTYSFELLSN 144
Query: 124 KNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKT-----------YYKTASLI 172
G M ++D Y + T +KTA LI
Sbjct: 145 ALLESHIIVELIKILSANGGIKGMILGQ----ALDCYFENTPLNLEQLTFLHEHKTAKLI 200
Query: 173 SNSCKAIALLAGQTAEVAILAF--DYGKNLGLAYQLIDDVLDFTGTSASLGK 222
S S + L+A + + + +G +GL +Q++DD++D T GK
Sbjct: 201 SASL-IMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGK 251
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 37/232 (15%)
Query: 7 PKLASAAEYFFKMGVEG-KRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 65
P L A FF+M + G KRFRP + L + AL G +D + +T I
Sbjct: 34 PYLEKA---FFEMVLNGGKRFRPKLFLAVLCAL---------VGQKDY--SNQQTEYFKI 79
Query: 66 AEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL 123
A E +H SL+HDD+ +D+A RR +L+ ++ AVL GD L+ L S
Sbjct: 80 ALSIECLHTYSLIHDDLPCMDNAALRRNHPTLH-AKYDETTAVLIGD-ALNTYSFELLSN 137
Query: 124 KNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKT-----------YYKTASLI 172
G M ++D Y + T +KTA LI
Sbjct: 138 ALLESHIIVELIKILSANGGIKGMILGQ----ALDCYFENTPLNLEQLTFLHEHKTAKLI 193
Query: 173 SNSCKAIALLAGQTAEVAILAF--DYGKNLGLAYQLIDDVLDFTGTSASLGK 222
S S + L+A + + + +G +GL +Q++DD++D T GK
Sbjct: 194 SASL-IMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGK 244
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 45 PLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVL 104
PL G+E A A EL Q + L+HDD+ D ++ RRG +L+ + L
Sbjct: 57 PLEAGLEAATALELF--QNWV-----------LVHDDIEDGSEERRGRPALH-RLHPMPL 102
Query: 105 AVLAGDFLLSRACVALA-----SLKNXXXXXXXXXXXXXXXXGETMQMTTS----SDQRC 155
A+ AGD + + LA L G+ + + + D R
Sbjct: 103 ALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRP 162
Query: 156 SMDYY---MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 212
DY+ K Y TA + ALLAG+T A + G LG A+Q++DDVL+
Sbjct: 163 E-DYFRMVAHKAAYYTAV---APLRLGALLAGKTPPAAY--EEGGLRLGTAFQIVDDVLN 216
Query: 213 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFP 245
G A GK D+ G T +L +EE P
Sbjct: 217 LEGGEAY-GKERAGDLYEGKRTLILLRFLEEAP 248
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 166 YKTASLISNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGS 224
+KT +LI S AL +G+ + + A Y + +GLA+Q+ DD+LD +A+LGK
Sbjct: 187 HKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQ 246
Query: 225 LSDIRHGIITAPILFAM 241
+DI T P L +
Sbjct: 247 GADIARDKPTYPALLGL 263
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 166 YKTASLISNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGS 224
+KT +LI S AL +G+ + + A Y + +GLA+Q+ DD+LD +A+LGK
Sbjct: 180 HKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQ 239
Query: 225 LSDIRHGIITAPILFAM 241
+DI T P L +
Sbjct: 240 GADIARDKPTYPALLGL 256
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 84/216 (38%), Gaps = 49/216 (22%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
K+ A Y G GKR RP VL + A L G E++LA A
Sbjct: 39 KIHEAMRYSLLAG--GKRVRP-VLCIAACELV---------GGEESLAMP-------AAC 79
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXX 127
EMIH SL+HDD V G V AVLAGD LLS A LAS +
Sbjct: 80 AVEMIHTMSLIHDD----------------VYGEDV-AVLAGDALLSFAFEHLASATS-- 120
Query: 128 XXXXXXXXXXXXXXGETMQMTTSSD---------QRCSMDYYMQKTYYKTASLISNSCKA 178
GE + + +++ +KTA+L+ S
Sbjct: 121 --SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISNVGLEHLKFIHLHKTAALLEASAVL 178
Query: 179 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 214
++ G + E + + +GL +Q++DD+LD T
Sbjct: 179 GGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVT 214
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 28/242 (11%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK FR +++ + +N+ +D LA +++I E++H +SLL DD+
Sbjct: 40 GKNFRLNLIVQINRVMNLP---------KDQLA--------IVSQIVELLHNSSLLIDDI 82
Query: 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNX-----XXXXXXXXXXX 137
D+A RRG + + + G + +++ RA ++ L
Sbjct: 83 EDNAPLRRGQTTSHLIFGVPS-TINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELI 141
Query: 138 XXXXGETMQMTTS---SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAF 194
G+ + + + + + Y+ KT L + + + L+ + L
Sbjct: 142 NLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLV- 200
Query: 195 DYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQG 254
+ LG+ YQ+ DD L+ S KG DI G ++ PI+ A+ F + + EQ
Sbjct: 201 PFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHAL-NFTKTKGQTEQH 259
Query: 255 FE 256
E
Sbjct: 260 NE 261
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 93/233 (39%), Gaps = 34/233 (14%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP LL AT + V L DG A+ E IHV SL+HDD+
Sbjct: 50 GKRMRP--LLTYATGQTIGVAADLLDGPACAV---------------EFIHVYSLIHDDL 92
Query: 83 LDDADT--RRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNXXXXX---------- 130
D RRG + + ++ A+LAGD L + A LA +
Sbjct: 93 PAMDDDDLRRGKPTCHKAY-DEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETL 151
Query: 131 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLA--GQTAE 188
G+ + + S ++ + KT +LI S + +A LA G AE
Sbjct: 152 AKASGPAGMVGGQAIDL-ASVGKKLDLPGLENMHIRKTGALIRASVR-LACLARPGLPAE 209
Query: 189 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241
Y K +GLA+Q+ DD+LD + +LGK D H P L +
Sbjct: 210 QFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGL 262
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 156 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 215
++D ++ KT +LIS + +A A+LAG A+ L Y LGLA+Q+ DD+LD G
Sbjct: 167 TLDEIIRLQAGKTGALISFAAQAGAILAG--ADRGPLTA-YATALGLAFQIADDILDVEG 223
Query: 216 TSASLGK 222
+ GK
Sbjct: 224 NEEAAGK 230
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 167 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 226
KT S I+++ K I+ AG V I G +++ + + F +LG +
Sbjct: 181 KTGSNITHTAKIISSTAGYRVPVTIERLKDG-TFHVSFPAVPGKIPFVILMRALGILTDR 239
Query: 227 DIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 279
DI + + P + E FP L EQ +NVD AL+++G I + RE
Sbjct: 240 DIVYAVSLDPEI-QNELFPSL----EQA-SSIANVDDALDFIGSRVAIGQKRE 286
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 167 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 226
KT S I+++ K I+ AG V I G +++ + + F +LG +
Sbjct: 178 KTGSNITHTAKIISSTAGYRVPVTIERLKDG-TFHVSFPAVPGKIPFVILMRALGILTDR 236
Query: 227 DIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 279
DI + + P + E FP L EQ +NVD AL+++G I + RE
Sbjct: 237 DIVYAVSLDPEV-QNELFPSL----EQA-SSIANVDDALDFIGSRVAIGQKRE 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,722,790
Number of Sequences: 62578
Number of extensions: 276184
Number of successful extensions: 801
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 85
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)