BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020685
(322 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 533 bits (1373), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/322 (80%), Positives = 294/322 (91%), Gaps = 1/322 (0%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMATALNVRVPE L D + +ELR
Sbjct: 102 MVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALNVRVPEALIGESTDIVTSELRV 161
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN VMGNK ++VLAGDFLLSRAC AL
Sbjct: 162 RQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNK-MSVLAGDFLLSRACGAL 220
Query: 121 ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
A+LKNTEVV LLAT VEHLVTGETM++T+S++QR SMDYYMQKTYYKTASLISNSCKA+A
Sbjct: 221 AALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVA 280
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGTSASLGKGSLSDIRHG+ITAPILFA
Sbjct: 281 VLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFA 340
Query: 241 MEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 300
MEEFPQLR VV+Q +D NVDIALEYLGKS+GIQ+ RELA++HANLAAAAI SLPE ++
Sbjct: 341 MEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDN 400
Query: 301 EDVTKSRRALLDLTHRVITRNK 322
EDV +SRRAL+DLTHRVITRNK
Sbjct: 401 EDVKRSRRALIDLTHRVITRNK 422
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/322 (75%), Positives = 287/322 (89%), Gaps = 1/322 (0%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
MV AEVPKLASAAEYFFK+G EGKRFRPTVLLLMA+AL + + GV LA +LRT
Sbjct: 110 MVAAEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALKFPLSDSTEVGVLTILANKLRT 169
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
RQQ IAEITEMIHVASLLHDDVLDDADTRRG+ SLN +MGNK L+VLAGDFLLSRACVAL
Sbjct: 170 RQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMGNK-LSVLAGDFLLSRACVAL 228
Query: 121 ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
A+L NTEVV+L+AT VEHLVTGETMQ++TS +QR SMDYY+QKTYYKTASLISNSCKA+A
Sbjct: 229 AALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDYYLQKTYYKTASLISNSCKAVA 288
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
+LAG TA+V++LA++YG+NLGLA+QLIDDVLDFTGTSASLGKGSL+DIRHGIITAP+L+A
Sbjct: 289 ILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPMLYA 348
Query: 241 MEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 300
MEEFPQL VV++GF++ +NV++AL+YL KSRGI+KT+ELA +HAN A AI++LP+++D
Sbjct: 349 MEEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKELAREHANRAIKAIEALPDSDD 408
Query: 301 EDVTKSRRALLDLTHRVITRNK 322
EDV SRRAL+D+T RVITR K
Sbjct: 409 EDVLTSRRALIDITERVITRTK 430
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 207/316 (65%), Gaps = 27/316 (8%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L+S + Y+F++ +GKR RPT++LL++ AL++ + Q +A
Sbjct: 168 PILSSISSYYFEL--KGKRIRPTIVLLLS----------------KALSSTVHGSQLKLA 209
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT 126
EI EMIH ASL+HDDV+D+A TRR + S+N NK LA+L GD+LL+RA V L++++N
Sbjct: 210 EIVEMIHTASLVHDDVIDEASTRRDVISINHSYTNK-LAILCGDYLLARASVVLSTIRNP 268
Query: 127 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT 186
+V ++T + LV GE MQ S+ S D Y+QKTY KT SLI+NSC++ A+L+G
Sbjct: 269 DVTECMSTALAELVEGEFMQ--AKSNGVVSFDNYLQKTYLKTGSLITNSCRSAAILSGAD 326
Query: 187 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQ 246
+ + ++ ++GKNLGLA+Q++DD+LD+TG++ GK + D+ G+ TAP+L+A +EFPQ
Sbjct: 327 SNIINISTEFGKNLGLAFQIVDDLLDYTGSAEECGKATSVDLTLGLATAPVLYATQEFPQ 386
Query: 247 LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 306
L ++++ F + +V+ A + S+GI+KTR LA+++ N A ++ LP+ ++S
Sbjct: 387 LEKLIKRKFSEIGDVEEAKRLVALSKGIEKTRNLAIEYCNRAIQSLLKLPQ------SES 440
Query: 307 RRALLDLTHRVITRNK 322
R L+ L+H V+TR K
Sbjct: 441 RDLLITLSHIVVTRTK 456
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/352 (42%), Positives = 210/352 (59%), Gaps = 45/352 (12%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLM--ATALNVRVPEPLHDGVEDALA--------- 55
P L AA+Y+ + EGK RP ++LLM ATAL + P+ ++ + A
Sbjct: 107 PSLDRAAKYYTQ--AEGKHVRPLIVLLMSRATALCPKAPQRQQSTLQASAAIDTSISPLN 164
Query: 56 ------------------TELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNF 97
T++ Q+ +AEITE+IH ASLLHDDV+D +++RRG S N
Sbjct: 165 ILSDFNPSDATPVSIPADTDILPSQRRLAEITELIHTASLLHDDVIDHSESRRGAPSANL 224
Query: 98 VMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM-TTSSDQRC- 155
GNK +AVLAGDFLL RA VALA L++ EVV LLATV+ +LV GE MQ+ T+ D++
Sbjct: 225 EFGNK-MAVLAGDFLLGRASVALARLRHAEVVELLATVIANLVEGEFMQLKNTARDEKNP 283
Query: 156 -----SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 210
++ YY+QKTY KTASLIS SC+A ALL G A A+ YGKNLGLA+QL+DD+
Sbjct: 284 KWSEETLTYYLQKTYLKTASLISKSCRASALLGGADAATVDAAYLYGKNLGLAFQLVDDM 343
Query: 211 LDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGK 270
LD+T + LGK + +D+ G+ TAP+LFA + P+L +V + FE + A E + +
Sbjct: 344 LDYTRSEKELGKPAGADLELGLATAPLLFAWKTMPELGPLVGRKFEKEGDAARARELVLQ 403
Query: 271 SRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 322
S GI++TR LA +A A AI P++ +D L+++ + + RNK
Sbjct: 404 SNGIEQTRALAQDYAEKAIEAISGFPDSEAKD------GLIEMAVKTLKRNK 449
>sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1
PE=1 SV=1
Length = 409
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 204/315 (64%), Gaps = 19/315 (6%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
+L +EY+F +GK FRP +++LMA A N+ H+ A E++ Q+ IA
Sbjct: 114 ELKDMSEYYFDG--KGKAFRPIIVVLMARACNIH-----HNN-----AREMQASQRSIAL 161
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTE 127
+ EMIH A+L+HDDV+DDA +RRG ++N + G K AVLAGD +LS A VALA + NT
Sbjct: 162 VAEMIHTATLVHDDVIDDASSRRGKHTVNKIWGEKK-AVLAGDLILSAASVALARIGNTA 220
Query: 128 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 187
VV++LA V+E LV GE +Q+ + ++ +Y++KT+ KTASLI+NSCKA+++L
Sbjct: 221 VVSMLAQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDP 280
Query: 188 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQL 247
V +A+ YGKN+G+A+QLIDDVLDFT S +GK + +D++ GI T P+LFA ++FP++
Sbjct: 281 VVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFACQQFPEM 340
Query: 248 RTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 307
++ + F +VD A +Y+ +S G+Q+T LA ++ + A I L + + D
Sbjct: 341 NAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHKAVREIRKLRPSTERD----- 395
Query: 308 RALLDLTHRVITRNK 322
AL+ L+ V+TR+K
Sbjct: 396 -ALIQLSESVLTRDK 409
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1
PE=1 SV=1
Length = 415
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 200/315 (63%), Gaps = 19/315 (6%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
+L +EY+F +GK FRP ++ LMA A N+ H+ A+ Q+ IA
Sbjct: 120 ELKEMSEYYFDG--KGKAFRPIIVALMARACNIH-----HNNSRHVQAS-----QRAIAL 167
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTE 127
I EMIH ASL+HDDV+DDA +RRG ++N + G K AVLAGD +LS A +ALA + NT
Sbjct: 168 IAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKK-AVLAGDLILSAASIALARIGNTT 226
Query: 128 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 187
V+++L V+E LV GE +Q+ + ++ +Y++KT+ KTASLI+NSCKA+++L
Sbjct: 227 VISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDP 286
Query: 188 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQL 247
V +A+ YGKN+G+A+QLIDDVLDFT S +GK + +D++ G+ T P+LFA ++FP++
Sbjct: 287 VVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEM 346
Query: 248 RTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 307
++ + F +VD A +Y+ +S G+Q+T LA ++ + A I L + + D
Sbjct: 347 NAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPERD----- 401
Query: 308 RALLDLTHRVITRNK 322
AL+ L+ V+TR+K
Sbjct: 402 -ALIQLSEIVLTRDK 415
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 234 bits (598), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 199/320 (62%), Gaps = 23/320 (7%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V A P L +AAE+ F+ G GKR RP ++LL++ A L EL
Sbjct: 25 LVGARHPILGAAAEHLFEAG--GKRVRPAIVLLVSRAT--------------LLDQELTA 68
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
R + +AEITEMIH ASL+HDDV+D+AD RR + ++N + N+V AVLAGDFL +++ L
Sbjct: 69 RHRRLAEITEMIHTASLVHDDVVDEADLRRNVPTVNSLFDNRV-AVLAGDFLFAQSSWYL 127
Query: 121 ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
A+L N EVV LL+ V+ GE +Q D ++ Y++K+Y+KTASLI+NS KA
Sbjct: 128 ANLDNLEVVKLLSEVIRDFAEGEILQSINRFDTDTDLETYLEKSYFKTASLIANSAKAAG 187
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
+L+ +V ++YGK+LGLA+Q++DD+LDFT + LGK + SD+ G ITAP LFA
Sbjct: 188 VLSDAPRDVCDHLYEYGKHLGLAFQIVDDILDFTSPTEVLGKPAGSDLISGNITAPALFA 247
Query: 241 MEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 300
ME++P L ++E+ F + +++ ALE + + GI+++RELA A LA + L
Sbjct: 248 MEKYPLLGKLIEREFAQAGDLEQALELVEQGDGIRRSRELAANQAQLARQHLSVL----- 302
Query: 301 EDVTKSRRALLDLTHRVITR 320
+++ R +LL+L V+ R
Sbjct: 303 -EMSAPRESLLELVDYVLGR 321
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 215/370 (58%), Gaps = 64/370 (17%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRV----------------------PE 44
P L A Y+F+ EGK RP ++LL++ AL+ PE
Sbjct: 93 PTLNKVATYYFQS--EGKHVRPLIVLLLSRALSAIPESERDRGTFDASDVTENVGELNPE 150
Query: 45 P-----------LHDGVE------------DALATE---LRTRQQCIAEITEMIHVASLL 78
P LH G+ D L E + +Q+ +AEI EMIH ASLL
Sbjct: 151 PSINDPLSPIEILH-GINPDIVLNPLSRPSDPLPYESNGILPKQRRLAEIVEMIHTASLL 209
Query: 79 HDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEH 138
HDDV+D++ TRRG + N GNK +A+LAGDFLL RA VA+A L+N EV+ LL+T + +
Sbjct: 210 HDDVIDNSATRRGSPTGNVAFGNK-MAILAGDFLLGRASVAIARLRNAEVIELLSTTIAN 268
Query: 139 LVTGETMQM------TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAIL 192
LV GE MQ+ + + + +YY+ KTY KTASL+S SC+A A+L+G +
Sbjct: 269 LVEGEFMQLKNTIVDNSEIANKATFEYYIHKTYLKTASLMSKSCRAAAVLSGARNPIVDA 328
Query: 193 AFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVE 252
++ +GKNLGL +Q++DD+LD++ + LGK + +D++ G+ TAP+LFA E++P+L +++
Sbjct: 329 SYKFGKNLGLCFQVVDDMLDYSEGESHLGKPAGADLKLGLATAPVLFAWEKYPELGDMIK 388
Query: 253 QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLD 312
+ F+ +V+ A + ++ G+ +TRELA K+ + A A +D LP ++SR AL +
Sbjct: 389 RKFDGPGDVERARFLVQQADGLSRTRELAQKYCDEAVANLDLLP------YSESREALRN 442
Query: 313 LTHRVITRNK 322
LT +++ R+K
Sbjct: 443 LTMKMMNRSK 452
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 193/298 (64%), Gaps = 14/298 (4%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ A E A EL T
Sbjct: 71 LVGAENPVLVSAAEQIFGAG--GKRLRPALVFLVSRAT-----------AELAGLLELTT 117
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
Q +AEI EMIH ASL+HDDV+DD+ RRG +++ + G +V AVLAGDF+ +++ L
Sbjct: 118 EHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRV-AVLAGDFMFAQSSWFL 176
Query: 121 ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
A+L+N EV+ L++ V++ +GE Q +T D ++D Y+ K+YYKTASLI+ S ++ A
Sbjct: 177 ANLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAA 236
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
+ +G + + ++YG+NLGL++Q++DD+LDFT ++ LGK + SD+ G +TAP++FA
Sbjct: 237 IFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFA 296
Query: 241 MEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 298
+++ PQLR +++ F +++++ A+E + +S GI++ ELA + +A ++ LP +
Sbjct: 297 LQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREKGEIAIQSLQCLPRS 354
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 224 bits (570), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 195/299 (65%), Gaps = 14/299 (4%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ A E A EL T
Sbjct: 102 LVGAENPVLVSAAEQIFGAG--GKRLRPALVFLVSRAT-----------AELAGLLELTT 148
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
Q +AEI EMIH ASL+HDDV+DD+ RRG +++ + G +V AVLAGDF+ +++ L
Sbjct: 149 EHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRV-AVLAGDFMFAQSSWFL 207
Query: 121 ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
A+L+N EV+ L++ V++ +GE Q +T D ++D Y+ K+YYKTASL+++S ++ A
Sbjct: 208 ANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAA 267
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
+ +G + + ++YG+NLGL++Q++DD+LDFT ++ LGK + SD+ G +TAP++FA
Sbjct: 268 IFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFA 327
Query: 241 MEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 299
+++ P+LR +++ F +S ++ A++ + +S GI++ +ELA + +LA + LP++
Sbjct: 328 LQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQ 386
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 187/296 (63%), Gaps = 14/296 (4%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ A E A EL
Sbjct: 116 IVGAENPVLISAAEQIFSAG--GKRMRPGLVFLVSRAT-----------AELAGLKELTV 162
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
+ + EI EMIH ASL+HDDVLD++D RRG +++ + G +V AVLAGDF+ ++A L
Sbjct: 163 EHRRLGEIIEMIHTASLIHDDVLDESDMRRGRETVHELFGTRV-AVLAGDFMFAQASWYL 221
Query: 121 ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
A+L+N EV+ L++ V++ +GE Q ++ D +D YM K+YYKTASL++ S K A
Sbjct: 222 ANLENLEVIKLISQVIKDFASGEIKQASSLFDCDVKLDDYMLKSYYKTASLVAASTKGAA 281
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
+ + ++VA + +GKNLGL++Q++DD+LDFT ++ LGK + +D+ G ITAP++FA
Sbjct: 282 IFSKVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFA 341
Query: 241 MEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 296
+E P+LR ++E F + +++ A+E + GI+K +ELA + A LA ++ LP
Sbjct: 342 LENEPRLREIIESEFCEPGSLEEAIEIVRNRGGIKKAQELAKEKAELALKNLNCLP 397
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 190/299 (63%), Gaps = 14/299 (4%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ H E A EL T
Sbjct: 105 IVGAENPVLISAAEQIF--GAGGKRMRPGLVFLVS-----------HATAELAGLKELTT 151
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
+ +AEI EMIH ASL+HDDVLD++D RRG +++ + G +V AVLAGDF+ ++A L
Sbjct: 152 EHRRLAEIIEMIHTASLIHDDVLDESDMRRGKETVHELFGTRV-AVLAGDFMFAQASWYL 210
Query: 121 ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
A+L+N EV+ L++ V++ +GE Q ++ D +D Y+ K++YKTASL++ S K A
Sbjct: 211 ANLENLEVIKLISQVIKDFASGEIKQASSLFDCDTKLDEYLLKSFYKTASLVAASTKGAA 270
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
+ + +V +++GKNLGL++Q++DD+LDFT ++ LGK + SD+ G +TAP++FA
Sbjct: 271 IFSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFA 330
Query: 241 MEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 299
+E P+LR ++E F ++ +++ A+E + K GI++ +ELA + A+ A + LP +
Sbjct: 331 LEREPRLREIIESEFCEAGSLEEAIEAVTKGGGIKRAQELAREKADDAIKNLQCLPRSG 389
>sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1
Length = 323
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 199/316 (62%), Gaps = 23/316 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L++AA++ + VE K+ RP ++LL+A A++ +++T QQ +A
Sbjct: 31 PILSAAAKHL--LIVESKKIRPAIVLLVAKAIDKN--------------KKIKTSQQRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT 126
E+TE+IH A+LLHDDV+D++ RRG S+N GNK+ AV AGDFL +++ LA++ N
Sbjct: 75 EVTEIIHTATLLHDDVVDESIIRRGTKSVNKTFGNKI-AVFAGDFLFAQSSWYLANINNL 133
Query: 127 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT 186
EVV ++ V+ L GE Q T + S+ Y++K++ KTASLI+ SCK+ LL+
Sbjct: 134 EVVKAISKVITDLAEGELQQNLTQFNTYYSIIKYLEKSFNKTASLIAASCKSCCLLSDFD 193
Query: 187 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQ 246
+ ++YGKNLGLA+Q+IDD+LD T +S +LGK + SD++ G +TAP+LFA+ + +
Sbjct: 194 QSLNSKFYNYGKNLGLAFQIIDDILDITSSSTALGKMTTSDLKLGNLTAPVLFALTKNSK 253
Query: 247 LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 306
L ++E+ F + S++ A+ + ++ I+++ +LA +H A +I LP ++++D
Sbjct: 254 LFKIIEREFCEKSDISEAINIIKETNAIEESFDLAYEHIEAAINSIKDLPTSSEKD---- 309
Query: 307 RRALLDLTHRVITRNK 322
+L+++ + ++ R K
Sbjct: 310 --SLIEIAYDLLNRYK 323
>sp|O43091|DPS1_SCHPO Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 378
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 193/316 (61%), Gaps = 22/316 (6%)
Query: 22 EGKRFRPTVLLLM--ATALNVRVPEPL-------HDGVEDALATELRTRQQCIAEITEMI 72
+GK+ RP+++LLM AT+L + + D + ++ Q +A+ITEMI
Sbjct: 70 QGKQMRPSLVLLMSKATSLCHGIDRSVVGDKYIDDDDLRSFSTGQILPSQLRLAQITEMI 129
Query: 73 HVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLL 132
H+ASLLHDDV+D A+ RRG S N GN+ ++LAG+F+L+RA A+A L+N +V LL
Sbjct: 130 HIASLLHDDVIDHANVRRGSPSSNVAFGNR-RSILAGNFILARASTAMARLRNPQVTELL 188
Query: 133 ATVVEHLVTGETMQMTTSSD------QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT 186
ATV+ LV GE +Q+ + D ++ + DYY++K++ KTASLIS SCKA +L +
Sbjct: 189 ATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLISKSCKASTILGQCS 248
Query: 187 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQ 246
VA A +YG+ +G A+QL+DDVLD+T +LGK + +D++ G+ TAP+LFA +++P+
Sbjct: 249 PTVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPE 308
Query: 247 LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 306
L ++ F S++ A + + I++T A ++ A ++ LP+ + +
Sbjct: 309 LGAMIVNRFNHPSDIQRARSLVECTDAIEQTITWAKEYIKKAKDSLLCLPD------SPA 362
Query: 307 RRALLDLTHRVITRNK 322
R+AL L +VITR K
Sbjct: 363 RKALFALADKVITRKK 378
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 192/314 (61%), Gaps = 23/314 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L +AA++ F+ G GKR RP ++LL+A + + + E++ Q+ +A
Sbjct: 31 PILYAAAKHLFEAG--GKRLRPAIVLLVAKSTSEQ--------------QEIKPGQRRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT 126
EITE+IH ASL+HDDV+D+ TRRG +++ + K+ AVLAGDFL +++ LA++ N
Sbjct: 75 EITEIIHTASLVHDDVIDECSTRRGEKTVHKLFNTKI-AVLAGDFLFAQSSWYLANIGNL 133
Query: 127 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT 186
EVV ++ V+ GE Q D S+D Y++K++YKTASL++ SC+ A+L
Sbjct: 134 EVVKVITKVITDFAEGEIRQGLVHFDPSISIDDYIEKSFYKTASLVAASCRGAAMLNDLN 193
Query: 187 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQ 246
+++ + YGK++GLA+Q++DDVLD G++ SLGK S +D +G +TAPILFA+ + +
Sbjct: 194 SQMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGKPSGADFMNGNLTAPILFALTQEGK 253
Query: 247 LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 306
L ++++ F D ++ +AL + KS GI K ++LA + A + LP+ +
Sbjct: 254 LDQLIQREFSDERDISLALFLIKKSGGITKAKDLAKEQVQAALCCLQFLPK------SAP 307
Query: 307 RRALLDLTHRVITR 320
+L +LTH +ITR
Sbjct: 308 VSSLKELTHFIITR 321
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 184/325 (56%), Gaps = 53/325 (16%)
Query: 43 PEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNK 102
PEPL + D L +Q+ +AEI EMIH ASLLHDDV+D +DTRRG S N NK
Sbjct: 157 PEPLPEETFDKQRGIL-PKQRRLAEIVEMIHTASLLHDDVIDHSDTRRGRPSGNAAFTNK 215
Query: 103 VLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSS----------- 151
+AVLAGDFLL RA V+++ L N EVV L++ + +LV GE MQ+ +S
Sbjct: 216 -MAVLAGDFLLGRATVSISRLHNPEVVELMSNSIANLVEGEFMQLKNTSIDADIDTIENG 274
Query: 152 -------------------------------DQ--RCSMDYYMQKTYYKTASLISNSCKA 178
DQ + +YY+ KTY KTA+LIS SC+
Sbjct: 275 HKLLPVPSKKLEVKEHDFRVPSRQQGLQLSHDQIIETAFEYYIHKTYLKTAALISKSCRC 334
Query: 179 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPIL 238
A+L+G + V +D+G+NLG+ +QL+DD+LDFT + LGK S +D++ GI TAP+L
Sbjct: 335 AAILSGASPAVIDECYDFGRNLGICFQLVDDMLDFTVSGKDLGKPSGADLKLGIATAPVL 394
Query: 239 FAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI-DSLPE 297
FA +E P L ++ + F + +V+ ++ + GI KT+ LA ++ + A + DSLPE
Sbjct: 395 FAWKEDPSLGPLISRNFSERGDVEKTIDSVRLHNGIAKTKILAEEYRDKALQNLRDSLPE 454
Query: 298 NNDEDVTKSRRALLDLTHRVITRNK 322
++ +R AL LT+ ++TR K
Sbjct: 455 SD------ARSALEFLTNSILTRRK 473
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 193/314 (61%), Gaps = 23/314 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L +AA++ F G GKR RP ++ L+A A + + ++ T Q+ +A
Sbjct: 31 PILYAAAKHLFDAG--GKRVRPALVFLVAKATSEK--------------QDINTGQKRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT 126
EITE+IH ASL+HDD++D+ TRRG+ +++ + K+ AVLAGDFL +++ LA+++N
Sbjct: 75 EITEIIHTASLVHDDIIDECTTRRGVKTVHNLFNTKI-AVLAGDFLFAQSSWYLANIENL 133
Query: 127 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT 186
VV ++ V+ GE Q D S+D Y++K++YKTASLI+ SC+ A+L G
Sbjct: 134 AVVKAISKVITDFAEGEIRQGLVHFDPSISIDAYIEKSFYKTASLIAASCRGAAMLNGSN 193
Query: 187 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQ 246
++ + YGK++GLA+Q++DDVLD TG++ SLGK + +D+ +G +T+P+LF++ +
Sbjct: 194 HQINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGKPAGADLINGNLTSPLLFSLTQEAS 253
Query: 247 LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 306
L ++++ F +S+++ L + +S GI K ++LA + A + + LP+ +
Sbjct: 254 LNDLIDREFCNSTDIASTLFLIKRSGGITKAKDLAKEQVQAALSCLQFLPQ------STP 307
Query: 307 RRALLDLTHRVITR 320
+L +LTH +ITR
Sbjct: 308 VSSLKELTHFIITR 321
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 201 bits (510), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 204/314 (64%), Gaps = 23/314 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L++A+E+ F GKR RP ++LL++ A +E+ + T +R + +A
Sbjct: 31 PILSAASEHLF--SASGKRPRPAIVLLISKA-----------TMENEIIT---SRHRRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT 126
EITE+IH ASL+HDD+LD++D RRGI +++ G K+ A+LAGDFL +++ LA+L++
Sbjct: 75 EITEIIHTASLVHDDILDESDVRRGIPTVHSDFGTKI-AILAGDFLFAQSSWYLANLESL 133
Query: 127 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT 186
EVV L++ V+ GE + +++ Y++K++YKTASL++ S KA ALL+
Sbjct: 134 EVVKLISKVITDFAEGEIRRGLNQFKVDLTLEEYLEKSFYKTASLLAASSKAAALLSHVD 193
Query: 187 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQ 246
VA ++YG++LGLA+Q++DD+LDFT ++ LGK S SD++ G +TAP+LFA+E+ +
Sbjct: 194 LTVANDLYNYGRHLGLAFQIVDDILDFTSSTEELGKPSCSDLKKGNLTAPVLFALEQNSE 253
Query: 247 LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 306
L ++++ F + + + L+ + +++ I+KTRELA++HA +A +++LP ++ S
Sbjct: 254 LIPLIQRQFSEPKDFEYTLQIVEETKAIEKTRELAMEHAQVAIQCLENLPPSS------S 307
Query: 307 RRALLDLTHRVITR 320
+ AL +T V+ R
Sbjct: 308 KEALKLITKYVLER 321
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 160/305 (52%), Gaps = 30/305 (9%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP + +L A A+ ++G +A T IA + E IH A+LLHDDV
Sbjct: 44 GKRIRPMIAVLAARAVG-------YEG--NAHVT--------IAALIEFIHTATLLHDDV 86
Query: 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 142
+D++D RRG + N GN +VL GDF+ +RA + SL + +V+ +++ V + G
Sbjct: 87 VDESDMRRGKATANAAFGNAA-SVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEG 145
Query: 143 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 202
E +Q+ +D + + YM+ Y KTA L + + +LAG T E DYG+ LG
Sbjct: 146 EVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGT 205
Query: 203 AYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFED 257
A+QLIDD+LD+ LGK D+ G T P+L AM E+ +RT +EQG
Sbjct: 206 AFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQG-NG 264
Query: 258 SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRV 317
++ LE + ++ TR+ A + A+ A AA+ LP+ T R AL+ L H
Sbjct: 265 RHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPD------TPWREALIGLAHIA 318
Query: 318 ITRNK 322
+ R++
Sbjct: 319 VQRDR 323
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 160/305 (52%), Gaps = 30/305 (9%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP + +L A A+ ++G +A T IA + E IH A+LLHDDV
Sbjct: 44 GKRIRPMIAVLAARAVG-------YEG--NAHVT--------IAALIEFIHTATLLHDDV 86
Query: 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 142
+D++D RRG + N GN +VL GDF+ +RA + SL + +V+ +++ V + G
Sbjct: 87 VDESDMRRGKATANAAFGNAA-SVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEG 145
Query: 143 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 202
E +Q+ +D + + YM+ Y KTA L + + +LAG T E DYG+ LG
Sbjct: 146 EVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGT 205
Query: 203 AYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFED 257
A+QLIDD+LD+ LGK D+ G T P+L AM E+ +RT +EQG
Sbjct: 206 AFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQG-NG 264
Query: 258 SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRV 317
++ LE + ++ TR+ A + A+ A AA+ LP+ T R AL+ L H
Sbjct: 265 RHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPD------TPWREALIGLAHIA 318
Query: 318 ITRNK 322
+ R++
Sbjct: 319 VQRDR 323
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 162/323 (50%), Gaps = 32/323 (9%)
Query: 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 63
++VP + Y + G GKR RP + +L A +L +
Sbjct: 33 SDVPLIGQLGFYIVQGG--GKRIRPLIAVLAARSLGFEGSNSI----------------- 73
Query: 64 CIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL 123
A E IH ASLLHDDV+D++D RRG + N GN +VL GDF+ +RA +A L
Sbjct: 74 TCATFVEFIHTASLLHDDVVDESDMRRGRATANAEFGNAA-SVLVGDFIYTRAFQLVAQL 132
Query: 124 KNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLA 183
++ ++++++A L GE Q+ +D S YM+ Y KTA L + +A A++A
Sbjct: 133 ESLKILSIMADATNVLAEGEVQQLMNVNDPETSEANYMRVIYSKTARLFEVAGQAAAIVA 192
Query: 184 GQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-- 241
G T DYG+ LG A+QL+DDVLD++ + +LGK D+ G T P+L AM
Sbjct: 193 GGTEAQEKALQDYGRYLGTAFQLVDDVLDYSANTQALGKNVGDDLAEGKPTLPLLHAMRH 252
Query: 242 ---EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 298
++ +R +EQG + + +D L + + + + A + A A AI+ LPE
Sbjct: 253 GNAQQAALIREAIEQGGKREA-IDEVLAIMTEHKSLDYAMNRAKEEAQKAVDAIEILPE- 310
Query: 299 NDEDVTKSRRALLDLTHRVITRN 321
++ ++AL+ L + + RN
Sbjct: 311 -----SEYKQALISLAYLSVDRN 328
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 151/299 (50%), Gaps = 21/299 (7%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
V +E L AA + + G GKR RP +LL A G D R
Sbjct: 25 VQSEYGPLGEAALHLLQAG--GKRIRPVFVLLAARF-----------GQYDL------ER 65
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALA 121
+ +A E+IH+ASL+HDDV+DDAD RRG ++ N+ A+ GD+L +R+ +A
Sbjct: 66 MKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKAKWSNR-FAMYTGDYLFARSLERMA 124
Query: 122 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 181
L N +LA + + GE Q+ + Y+++ KTA LI+ SC+ AL
Sbjct: 125 ELGNPRAHQVLAKTIVEVCRGEIEQIKDKYRFDQPLRTYLRRIRRKTALLIAASCQLGAL 184
Query: 182 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241
AG + + +G +G+++Q+ DD+LDFTGT LGK + SD+ G +T P+L+A+
Sbjct: 185 AAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNVTLPVLYAL 244
Query: 242 EEFPQLRTVVEQGFE-DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 299
+ + G E D + + + + ++ I+++ L+ ++ + A +D LP N
Sbjct: 245 SDERVKAAIAAVGPETDVAEMAAVISAIKRTDAIERSYALSDRYLDKALHLLDGLPMNE 303
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 154/297 (51%), Gaps = 23/297 (7%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
V ++ P L+ A + + G GKR RP +LL + + +
Sbjct: 53 VRSDYPLLSEAGLHLLQAG--GKRIRPVFVLLSGMFGDYDI-----------------NK 93
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALA 121
+ +A EMIH+ASL+HDDV+DDA+ RRG ++ N++ A+ GD++L+ + +
Sbjct: 94 IKYVAVTLEMIHMASLVHDDVIDDAELRRGKPTIKAKWDNRI-AMYTGDYMLAGSLEMMT 152
Query: 122 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 181
+ + +L+ + + GE Q+ + ++ Y+++ KTA LI+ SC+ A+
Sbjct: 153 RINEPKAHRILSQTIVEVCLGEIEQIKDKYNMEQNLRTYLRRIKRKTALLIAVSCQLGAI 212
Query: 182 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241
+G ++ + +G +G++YQ+IDD+LDFT T LGK D+ G +T P+L+A+
Sbjct: 213 ASGADEKIHKALYWFGYYVGMSYQIIDDILDFTSTEEELGKPVGGDLLQGNVTLPVLYAL 272
Query: 242 EEFPQLRTVVEQGFEDSS--NVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 296
+ P L+ ++ +++ ++ +E + K+ I+ + ++ + A +++LP
Sbjct: 273 KN-PALKNQLKLINSETTQEQLEPIIEEIKKTDAIEASMAVSEMYLQKAFQKLNTLP 328
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 155/302 (51%), Gaps = 30/302 (9%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
+ AA + G GKR RP +LL L+D +D L +RT A
Sbjct: 32 INKAAHHILSSG--GKRVRPMFVLLSGF---------LNDTQKDDL---IRT-----AVS 72
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEV 128
E++H+ASL+HDD +D++D RRG S++ +K A+ G FLL+RA +A++ N++
Sbjct: 73 LELVHMASLVHDDYIDNSDMRRGNTSVHIAF-DKDTAIRTGHFLLARALQNIATINNSKF 131
Query: 129 VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 188
+ + + + GE QM + S Y+++ KTA LI SC AL + +
Sbjct: 132 HQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQ 191
Query: 189 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-----EE 243
+G +G++YQ+IDD+LD+T A+LGK SDIR+G IT P++ A+ ++
Sbjct: 192 STYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQD 251
Query: 244 FPQLRTVVEQGFEDSSNVDIALEYL---GKSRGIQKTRELAVKHANLAAAAIDSLPENND 300
+L VV+ S++ D +Y+ K GI+ L+ K+ + A + L ++N
Sbjct: 252 DDKLEAVVKH--LTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQDSNI 309
Query: 301 ED 302
+D
Sbjct: 310 KD 311
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 159/324 (49%), Gaps = 33/324 (10%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
+ ++V + S +++ + G GKR RP + LL A A T L+
Sbjct: 28 ISSKVALVMSVSKHVVEAG--GKRMRPIMCLLAAYACG---------------ETNLKHA 70
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALA 121
Q+ +A I EM+H A+L+HDDV+D++ RRG + N N+ AVL GDFL++RA L
Sbjct: 71 QK-LAAIIEMLHTATLVHDDVVDESGLRRGRPTANATWNNQT-AVLVGDFLIARAFDLLV 128
Query: 122 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 181
L N ++ +T + GE +Q+ + D Y+Q + KT+ L + + A+
Sbjct: 129 DLDNMILLKDFSTGTCEIAEGEVLQLQAQHQPDTTEDIYLQIIHGKTSRLFELATEGAAI 188
Query: 182 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241
LAG+ L + + G A+Q+IDD+LD+T + +LGK D+ G T P++ AM
Sbjct: 189 LAGKPEYREPLR-RFAGHFGNAFQIIDDILDYTSDADTLGKNIGDDLMEGKPTLPLIAAM 247
Query: 242 -----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 296
E+ +R + G +S ++ + + S + + A + A A++ LP
Sbjct: 248 QNTQGEQRDLIRRSIATG--GTSQLEQVIAIVQNSGALDYCHKRATEETERALQALEILP 305
Query: 297 ENNDEDVTKSRRALLDLTHRVITR 320
E + R+AL++LT + R
Sbjct: 306 E------STYRQALVNLTRLALDR 323
>sp|Q86YH6|DLP1_HUMAN Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2
PE=1 SV=2
Length = 399
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 148/284 (52%), Gaps = 25/284 (8%)
Query: 25 RFRPTVLLLMATALNVRVPEPLHDGVEDA-LATELRTRQQCIAEITEMIHVASLLHDDVL 83
+ R V+LL++ A P ++ ++ + + + + Q+ +AEITE+IH+A L+H ++
Sbjct: 110 QLRGLVVLLISKAAG---PSSVNTSCQNYDMVSGIYSCQRSLAEITELIHIALLVHRGIV 166
Query: 84 DDADTRRGIGSL-NFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 142
+ + + G L + GNK+ A+L+GDFLL+ AC LA L+NT+VV LLA+ + LV G
Sbjct: 167 NLNELQSSDGPLKDMQFGNKI-AILSGDFLLANACNGLALLQNTKVVELLASALMDLVQG 225
Query: 143 ETMQMTTSSDQRCSMDY----YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGK 198
+ +TS + + D + ++T+ +L++ SC+A LA AEV +AF YGK
Sbjct: 226 VYHENSTSKESYITDDIGISTWKEQTFLSHGALLAKSCQAAMELAKHDAEVQNMAFQYGK 285
Query: 199 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME------EFPQLRTVVE 252
++ +++++ DV F S + + +AP++ E Q+ E
Sbjct: 286 HMAMSHKINSDVQPFIKEKTS------DSMTFNLNSAPVVLHQEFLGRDLWIKQIGEAQE 339
Query: 253 QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 296
+G D + + E + +G+ +L H N A A++S P
Sbjct: 340 KGRLDYAKLR---ERIKAGKGVTSAIDLCRYHGNKALEALESFP 380
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 159/320 (49%), Gaps = 33/320 (10%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L A+E+ G GK+ RP++ LL A+ P EDA +A
Sbjct: 31 LLKASEHLITAG--GKKIRPSLALLSCEAVG---GNP-----EDAAG---------VAAA 71
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTE- 127
E+IH SL+HDD++DD + RRG S++ + G +A+LAGD L S+A A+ ++E
Sbjct: 72 IELIHTFSLIHDDIMDDDEMRRGEPSVHVIWGEP-MAILAGDVLFSKAFEAVIRNGDSER 130
Query: 128 VVTLLATVVEHLVT---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG 184
V LA VV+ V G+ + M + D YM+ Y KTA+LI+ + KA A++ G
Sbjct: 131 VKDALAVVVDSCVKICEGQALDMGFEERLDVTEDEYMEMIYKKTAALIAAATKAGAIMGG 190
Query: 185 QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF 244
+ DYGK +GLA+Q+ DD LD SLGK SDI G +T ++ A+EE
Sbjct: 191 ASEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALEEA 250
Query: 245 PQ---LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 301
+ R + G D +V A+E + Q E+A+ + +A ++ L +++
Sbjct: 251 SEEDRERLISILGSGDEGSVAEAIEIFERYGATQYAHEVALDYVRMAKERLEILEDSD-- 308
Query: 302 DVTKSRRALLDLTHRVITRN 321
+R AL+ + V+ R
Sbjct: 309 ----ARDALMRIADFVLERE 324
>sp|Q33DR3|DLP1_MOUSE Decaprenyl-diphosphate synthase subunit 2 OS=Mus musculus GN=Pdss2
PE=1 SV=2
Length = 401
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 129/244 (52%), Gaps = 16/244 (6%)
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL-NFVMGNKVLAVLAGDFLLSRACVAL 120
Q+ +AEITE+IH A L+H +++ ++ + G L + GNK+ A+L+GDFLL+ AC L
Sbjct: 146 QRSLAEITELIHTALLVHRGIVNLSELQSSDGPLKDMQFGNKI-AILSGDFLLANACNGL 204
Query: 121 ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMD-----YYMQKTYYKTASLISNS 175
A L+NT+VV LL++ + LV G + + S+ + D + ++T+ +L++ S
Sbjct: 205 ALLQNTKVVELLSSALMDLVHGVYQENSASTKENSIPDDIGISTWKEQTFLSHCALLAKS 264
Query: 176 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 235
C+A LA A V +AF YGK++ +++++ D+ F AS K + +A
Sbjct: 265 CQAAMELAKHDAAVQDMAFQYGKHMAMSHKINADLQPFIKDKASDSK------TFNLNSA 318
Query: 236 PILFAMEEFPQ---LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 292
P++ E + ++ + E + S N E + +G+ +L H N A A+
Sbjct: 319 PVVLHQEFLGRDLWIKQIGEAQEKGSLNYSKLRETIKAGKGVTSAIDLCRYHGNKALEAL 378
Query: 293 DSLP 296
+S P
Sbjct: 379 ESFP 382
>sp|Q5U2R1|DLP1_RAT Decaprenyl-diphosphate synthase subunit 2 OS=Rattus norvegicus
GN=Pdss2 PE=2 SV=1
Length = 401
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 129/246 (52%), Gaps = 20/246 (8%)
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL-NFVMGNKVLAVLAGDFLLSRACVAL 120
Q+ +AEITE+IH A L+H +++ ++ + G L + GNK+ AVL+GDFLL+ AC L
Sbjct: 146 QRNLAEITELIHTALLVHRGIVNLSELQSSDGPLKDMKFGNKI-AVLSGDFLLANACNGL 204
Query: 121 ASLKNTEVVTLLATVVEHLVTGETMQMTTSS-------DQRCSMDYYMQKTYYKTASLIS 173
A L+NT+VV LLA+ + LV G + + S+ D R S + ++T+ +L++
Sbjct: 205 ALLQNTKVVELLASALMDLVQGIYQENSASTQGNPIPDDIRIST--WKEQTFLSHCALLA 262
Query: 174 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 233
SCKA LA A V +AF YGK++ +++++ D+ F AS K +
Sbjct: 263 KSCKAAMELAKHDAAVQDMAFQYGKHMAMSHKINSDLQPFIKDKASDSK------TFNLN 316
Query: 234 TAPILFAMEEFPQ---LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 290
+AP++ E + ++ + E + N E + +G+ +L H N A
Sbjct: 317 SAPVVLHQEFLGRDLWIKQIGEAQEKGRLNYTKLRETIKAGKGVTSAIDLCRYHGNKALE 376
Query: 291 AIDSLP 296
A++S P
Sbjct: 377 ALESFP 382
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 162/321 (50%), Gaps = 35/321 (10%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L A+E+ G GK+ RP++ LL + A+ +P DA +A
Sbjct: 31 LLRASEHLITAG--GKKIRPSLALLSSEAVG---GDP-----GDAAG---------VAAA 71
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEV 128
E+IH SL+HDD++DD + RRG +++ + G +A+LAGD L S+A A+ ++E+
Sbjct: 72 IELIHTFSLIHDDIMDDDEIRRGEPAVHVLWGEP-MAILAGDVLFSKAFEAVIRNGDSEM 130
Query: 129 VT-LLATVVEHLVT---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG 184
V LA VV+ V G+ + M + + YM+ Y KTA+LI+ + KA A++ G
Sbjct: 131 VKEALAVVVDSCVKICEGQALDMGFEERLDVTEEEYMEMIYKKTAALIAAATKAGAIMGG 190
Query: 185 QTA-EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME- 242
+ E+A L DYG+ +GLA+Q+ DD LD SLGK SDI G +T ++ A+E
Sbjct: 191 GSPQEIAALE-DYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALER 249
Query: 243 --EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 300
E + R + G D V A+E + + +A+ H +A ++ L E++
Sbjct: 250 ASEKDRERLISILGSGDEKLVAEAIEIFERYGATEYAHAVALDHVRMAKERLEVLEESD- 308
Query: 301 EDVTKSRRALLDLTHRVITRN 321
+R AL + V+ R
Sbjct: 309 -----AREALAMIADFVLERE 324
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 29/241 (12%)
Query: 8 KLASAAEYFFKMGVEGKRFRP--TVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 65
KL +A+++ G GKR RP TV+ M D +E+ L
Sbjct: 34 KLYNASKHLLFAG--GKRIRPYLTVVTYMLKK----------DDIEEVLPA--------- 72
Query: 66 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 125
A E+IH +L+HDD++D+ D RRG +++ V G +A+LAGD L ++A A++ +K+
Sbjct: 73 AAAVELIHNYTLIHDDIMDNDDERRGKPTVHVVYGEP-MAILAGDLLYAKAFEAVSRIKD 131
Query: 126 T----EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 181
EV+ +L+ + G+ M M + +M+ Y+ KT +L+ S A+
Sbjct: 132 NKKAHEVLKILSKACVEVCEGQAMDMEFEN-YYPTMEEYLDMIRKKTGALLEASVGIGAV 190
Query: 182 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241
+A E +Y K +GL +Q+ DDVLD G LGK SDIR G T ++ A+
Sbjct: 191 MADCNEEEREALKEYAKRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHAL 250
Query: 242 E 242
+
Sbjct: 251 K 251
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 27/248 (10%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
+ +VPKL A+ + F G GKR RP +L + + + R R
Sbjct: 23 ISGDVPKLYEASYHLFTSG--GKRLRPLILTISSDLFGGQ-----------------RER 63
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA----C 117
E++H +L+HDD++D + RRG+ +++ G LA+LAGD L ++A
Sbjct: 64 AYYAGAAIEVLHTFTLVHDDIMDQDNIRRGLPTVHVKYGLP-LAILAGDLLHAKAFQLLT 122
Query: 118 VALASLKNTEVVTLLATVVEHLVT---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 174
AL L + ++ ++ G+ + M Y+ KTA+L S
Sbjct: 123 QALRGLPSETIIKAFDIFTRSIIIISEGQAVDMEFEDRIDIKEQEYLDMISRKTAALFSA 182
Query: 175 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234
S AL+AG L D+G NLG+A+Q++DD+L T LGK SDIR G T
Sbjct: 183 SSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIREGKKT 242
Query: 235 APILFAME 242
++ +E
Sbjct: 243 ILVIKTLE 250
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 158/334 (47%), Gaps = 37/334 (11%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
V + L A+ + F G GKR RP VL+ D + + R
Sbjct: 24 FVKSNFKTLEEASFHLFTAG--GKRLRPLVLV----------------SSSDLIGGD-RE 64
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 120
R A E++H +L+HDD++D+ RRG+ +++ G + +A+LAGD+L ++A AL
Sbjct: 65 RAYKAAAAVEILHNFTLVHDDIMDNDGLRRGLPTVHVKWG-EPMAILAGDYLHAKAFEAL 123
Query: 121 -ASLK----NT--EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLIS 173
+LK NT + ++ T +E + G+ M M+ + + + Y+Q KTA L S
Sbjct: 124 NEALKGLDGNTFYKAFSIFITSIEIISEGQAMDMSFENRLDVTEEEYIQMIKGKTAMLFS 183
Query: 174 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 233
S ++ +V +YG NLG+++Q++DD+L G LGK SDIR G
Sbjct: 184 CSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDILGIIGDEKELGKPIYSDIREGKK 243
Query: 234 TAPILFAMEEFPQLRT---VVEQGFEDSSNVDI--ALEYLGKSRGIQKTRELAVKHANLA 288
T ++ + E + V G +++ D+ A E + K +Q +LA K+++LA
Sbjct: 244 TILVIKTLSEATEDEKKILVSTLGNKEAKKEDLERASEIIRK-HSLQYAYDLAKKYSDLA 302
Query: 289 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 322
+ +P +N + +AL L I R K
Sbjct: 303 IENLREIPVSN----KTAEKALKYLAQFTIQRRK 332
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 158/330 (47%), Gaps = 24/330 (7%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATAL-NVRVPEPL---HDGVEDALAT 56
+ V + +L SA+ Y G GKR RPT+LLL A +L +V EPL +
Sbjct: 26 LPVQKPERLYSASRYLLDAG--GKRLRPTILLLAAESLADV---EPLSADYRQFPSLPGD 80
Query: 57 ELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA 116
E+ ++ E+I +L+HDD++DD D RRG+ +++ + A+LAGD L S+A
Sbjct: 81 EVDVLSAAVS--IEVIQSFTLIHDDIMDDDDLRRGVPAVHREYDLET-AILAGDTLYSKA 137
Query: 117 C-----VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASL 171
+ ++ E + LAT + G+ + + + + + Y++ +KTA L
Sbjct: 138 FEYMLDTGAPAERSVEALDELATTCTEICEGQALDVDFENRSDVTTEEYLEMVEFKTAVL 197
Query: 172 ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 231
+ + A+L G E YG ++G A+Q+ DD+LD T S LGK SD+
Sbjct: 198 YAAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRGSDLVEN 257
Query: 232 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 291
T L A ++ + +V D + ++ A++ L + I RE+A+
Sbjct: 258 KRTVITLHARDQGIDVEGLVSDDPSD-AEIEAAVQTLEDAGSIDFAREMALDLVTSGKER 316
Query: 292 IDSLPENNDEDVTKSRRALLDLTHRVITRN 321
+D LPEN ++R+ L D+ ++ R+
Sbjct: 317 LDVLPEN------EARQLLEDIADFLVERS 340
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 21/220 (9%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK RP ++ + A A +P H + A++ EL +H SL+HDD+
Sbjct: 72 GKAIRPALVFVAAEAAGA---DP-HSAIPGAVSVEL-------------VHNFSLVHDDL 114
Query: 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE---HL 139
+D + RR ++ + G+ +A+LAGD +LS A L + V L + E L
Sbjct: 115 MDRDEHRRHRPTVWALWGD-AMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATREL 173
Query: 140 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKN 199
+ G+ S ++D ++ KTA+L++ S + ALLAG V YG++
Sbjct: 174 IRGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRH 233
Query: 200 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239
+GLA+QL+DD+L G GK SD+R T P+ +
Sbjct: 234 IGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 21/220 (9%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK RP ++ + A A +P H + A++ EL +H SL+HDD+
Sbjct: 72 GKAIRPALVFVAAEAAGA---DP-HSAIPGAVSVEL-------------VHNFSLVHDDL 114
Query: 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE---HL 139
+D + RR ++ + G+ +A+LAGD +LS A L + V L + E L
Sbjct: 115 MDRDEHRRHRPTVWALWGD-AMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATREL 173
Query: 140 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKN 199
+ G+ S ++D ++ KTA+L++ S + ALLAG V YG++
Sbjct: 174 IRGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRH 233
Query: 200 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239
+GLA+QL+DD+L G GK SD+R T P+ +
Sbjct: 234 IGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 30/253 (11%)
Query: 17 FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVAS 76
+ + GKR RP +L +A+ E +E AL T A EMIH S
Sbjct: 43 YSLSAGGKRIRP--ILCLASC------ELAGGTMEMALPT---------ACALEMIHTMS 85
Query: 77 LLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALAS-LKNTE---VVT 130
L+HDD+ +D+ RRG + + + G LA+LAGD LL+ A +A+ KN +V
Sbjct: 86 LIHDDLPAMDNDSYRRGKPTNHIIYGED-LAILAGDALLAYAFEFIATQTKNVPADLIVK 144
Query: 131 LLATVVEH-----LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 185
++A V LV G+ + +++ +++ +KT +L+ + + ALLAG
Sbjct: 145 VIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGA 204
Query: 186 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-F 244
+ Y +N+GLA+Q+IDDVLD T LGK D++ T P + +EE
Sbjct: 205 KEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESI 264
Query: 245 PQLRTVVEQGFED 257
Q +VE+ E+
Sbjct: 265 KQAELLVEEAKEE 277
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 29/232 (12%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP + L + G D++A A EMIH SL+HDD+
Sbjct: 118 GKRVRPALCLAACELV----------GGNDSMAMP-------AACAVEMIHTMSLIHDDL 160
Query: 83 --LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA-------CVALASLKNTEVVTLLA 133
+D+ D RRG + + V G V AVLAGD LL+ A + ++S + V LA
Sbjct: 161 PCMDNDDLRRGKPTNHIVFGEDV-AVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELA 219
Query: 134 TVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI 191
+ E LV G+ + + + ++ +KTA L+ + A+L G T E
Sbjct: 220 KAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVE 279
Query: 192 LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 243
Y +++GL +Q++DD+LD T +S LGK + D+ +T P L +E+
Sbjct: 280 KLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEK 331
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
K+ A Y G GKR RP VL + A L G E++LA R
Sbjct: 98 KIHEAMRYSLLAG--GKRVRP-VLCIAACELV---------GGEESLAMPARC------- 138
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 125
EMIH SL+HDD+ +D+ D RRG + + V G V AVLAGD LLS A LAS +
Sbjct: 139 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDV-AVLAGDALLSFAFEHLASATS 197
Query: 126 TEV--------VTLLATVV--EHLVTGETMQMTTSSD--QRCSMDYYMQKTYYKTASLIS 173
+EV V LA + E LV G+ + +++ +++ +KTA+L+
Sbjct: 198 SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLE 257
Query: 174 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 233
S ++ G + E + + +GL +Q++DD+LD T +S LGK + D+ +
Sbjct: 258 ASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKL 317
Query: 234 TAPILFAMEE 243
T P L +E+
Sbjct: 318 TYPKLMGLEK 327
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 22/209 (10%)
Query: 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 64
E P L E+ G GKR RP +LLL++ + + +R
Sbjct: 34 EDPGLKKMVEHVCHSG--GKRIRPIILLLVSE-----------------ICSGSYSRSLN 74
Query: 65 IAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 124
A EM+H ASL+HDD+LD RR + S G A+L GD+L++++ +A S
Sbjct: 75 AALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSG-ALLCGDYLIAKS-IAFISPY 132
Query: 125 NTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG 184
+V+ + GE + + + DY+ + Y KTASL + S A G
Sbjct: 133 GEKVIQDFGKAGMDMAEGEVLDLKLEDESFGENDYF-KCIYKKTASLFAISASIGAYTGG 191
Query: 185 QTAEVAILAFDYGKNLGLAYQLIDDVLDF 213
E+A +G LG AYQ++DD+L+F
Sbjct: 192 AEEELAERFSHFGNALGTAYQIVDDILEF 220
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 144/302 (47%), Gaps = 33/302 (10%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATAL--NVRVPEPLHDGVEDALATELRTRQQCI 65
+L A+ Y G GKR RP VL+L A A+ N+R P A+A EL
Sbjct: 32 ELYKASRYLVDAG--GKRLRPAVLILAAEAVGSNLRSVLPA------AVAVEL------- 76
Query: 66 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 125
+H +L+HDD++D D RRG+ +++ G + A+LAGD L S+A L+ ++N
Sbjct: 77 ------VHNFTLIHDDIMDRDDIRRGMPAVHVKWG-EAGAILAGDTLYSKAFEILSKVEN 129
Query: 126 TEVVTL-----LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 180
V L L+ + G+ + M + ++ + Y++ KT+ L + + K A
Sbjct: 130 EPVRVLKCMDVLSKTCTEICEGQWLDMDFETRKKVTESEYLEMVEKKTSVLYAAAAKIGA 189
Query: 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240
LL G + EVA +YG+ +G+ +Q+ DDVLD T LGK SD+ G T ++ A
Sbjct: 190 LLGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYTLIVINA 249
Query: 241 MEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL---PE 297
E+ +L + +G + A+ L + + + LA+ + +D L PE
Sbjct: 250 FEKGVKL-DIFGKGEATLEETEAAVRTLTECGSLDYVKNLAISYIEEGKEKLDVLRDCPE 308
Query: 298 NN 299
Sbjct: 309 KT 310
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 40/233 (17%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P LA+A Y G G R RPT+L+ +A A P V DA A L
Sbjct: 25 PLLAAALPYGVFPG--GARIRPTILVSVALACGDDCP-----AVTDAAAVAL-------- 69
Query: 67 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALA--- 121
E++H ASL+HDD+ D+AD RRG SL+ N+ LAVLAGD LL R LA
Sbjct: 70 ---ELMHCASLVHDDLPAFDNADIRRGKPSLHKAY-NEPLAVLAGDSLLIRGFEVLADVG 125
Query: 122 ------SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNS 175
+LK + L+ + G+ + S+ + + Y Q KT +L +
Sbjct: 126 AVNPDRALKLISKLGQLSGARGGICAGQAWE----SESKVDLAAYHQA---KTGALFIAA 178
Query: 176 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 228
+ A+ AG AE FD G +G A+Q+ DD+ D ++ ++GK + DI
Sbjct: 179 TQMGAIAAGYEAEPW---FDLGMRIGSAFQIADDLKDALMSAEAMGKPAGQDI 228
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 26/244 (10%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
+L+ A+ + K G GKR RP + LL A L E R +A
Sbjct: 17 RLSGASLHLIKAG--GKRLRPLITLLTARMLG---------------GLEAEARAIPLAA 59
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT- 126
E H SL+HDD++D + RRG+ + + V G+ A+LAGD L + A +A +
Sbjct: 60 SIETAHTFSLIHDDIMDRDEVRRGVPTTHVVYGDD-WAILAGDTLHAAAFKMIADSREWG 118
Query: 127 -------EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAI 179
+L+ + G+ M + Y+ KT +LI + +
Sbjct: 119 MSHEQAYRAFKVLSEAAIQISRGQAYDMLFEETWDVDVADYLNMVRLKTGALIEAAARIG 178
Query: 180 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239
A+ AG +E+ + + G N G+A+Q+ DD+L G GK +D+R G T +++
Sbjct: 179 AVAAGAGSEIEKMMGEVGMNAGIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIY 238
Query: 240 AMEE 243
A+++
Sbjct: 239 AVKK 242
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 121/251 (48%), Gaps = 35/251 (13%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
K+ A Y G GKR RP VL + A L G E++ A A
Sbjct: 102 KIHEAMRYSLLAG--GKRVRP-VLCIAACELV---------GGEESTAMP-------AAC 142
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 125
EMIH SL+HDD+ +D+ D RRG + + V G V AVLAGD LLS A LAS +
Sbjct: 143 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDV-AVLAGDALLSFAFEHLASATS 201
Query: 126 TEVVTLLATV-----------VEHLVTGETMQMTTSSD--QRCSMDYYMQKTYYKTASLI 172
++VV+ + V E LV G+ + +++ +++ +KTA+L+
Sbjct: 202 SDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALL 261
Query: 173 SNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 232
S A++ G + + + + +GL +Q++DD+LD T +S LGK + D+
Sbjct: 262 EASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADK 321
Query: 233 ITAPILFAMEE 243
+T P + +E+
Sbjct: 322 LTYPKIMGLEK 332
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 124/255 (48%), Gaps = 33/255 (12%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
++V E + A Y G GKR RP +L L A L + E+A+A
Sbjct: 97 IIVKEPHVIHEAMRYSLLAG--GKRVRP-MLCLAACEL-------VGGNQENAMAA---- 142
Query: 61 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA-- 116
A EMIH SL+HDD+ +D+ D RRG + + + G V AVLAGD LL+ A
Sbjct: 143 -----ACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDV-AVLAGDSLLAFAFE 196
Query: 117 --CVALASLKNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTA 169
+ A + + +V +A + E LV G+ + + + S++ +KTA
Sbjct: 197 HIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTA 256
Query: 170 SLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 228
+L+ +S A+L G T EV L + + +GL +Q++DD+LD T +S LGK + D+
Sbjct: 257 ALLESSVVLGAILGGGTNVEVEKLR-RFARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 315
Query: 229 RHGIITAPILFAMEE 243
T P L +E+
Sbjct: 316 VVDKTTYPKLLGLEK 330
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 112/247 (45%), Gaps = 35/247 (14%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
KL A Y + G GKR RP +LL AL G + A+ +A
Sbjct: 33 KLKKAMAYSLEAG--GKRIRPLLLLSTVRAL----------GKDPAVGLP-------VAC 73
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 125
EMIH SL+HDD+ +D+ D RRG + + V G + +A+LAGD LL+ A + + +
Sbjct: 74 AIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFG-EAMAILAGDGLLTYAFQLITEIDD 132
Query: 126 TEV--------VTLLATVV--EHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISN 174
+ + LA E +V G+ M S Y+ + +KT ++
Sbjct: 133 ERIPPSVRLRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHR--HKTGKMLQY 190
Query: 175 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234
S A AL+ G A ++ +LGLA+Q+ DD+LD G +GK SD + T
Sbjct: 191 SVHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKAT 250
Query: 235 APILFAM 241
P L ++
Sbjct: 251 YPALLSL 257
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 12/185 (6%)
Query: 70 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLS-------RACVAL 120
EMIH SL+HDD+ +D+ D RRG + + V G V AVLAGD LL+ A +
Sbjct: 135 EMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDV-AVLAGDALLAFAFEHIATATKGV 193
Query: 121 ASLKNTEVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKA 178
+S + VV LA + E LV G+ + + + +++ +KTA+L+ S
Sbjct: 194 SSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVL 253
Query: 179 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPIL 238
A++ G E + + +GL +Q++DD+LD T +S LGK + D+ +T P L
Sbjct: 254 GAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKL 313
Query: 239 FAMEE 243
+++
Sbjct: 314 LGIDK 318
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 27/200 (13%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP +LLL A L V HDG+ D +A EM+H ASL+ DD+
Sbjct: 52 GKRIRPMLLLLTARDLGCAVS---HDGLLD------------LACAVEMVHAASLILDDM 96
Query: 83 --LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA------CVALASLKNTEVVTLLAT 134
+DDA RRG +++ G V A+LA LLS+A L L V+ L+
Sbjct: 97 PCMDDAKLRRGRPTIHSHYGEHV-AILAAVALLSKAFGVIADADGLTPLAKNRAVSELSN 155
Query: 135 VV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAIL 192
+ + LV G+ ++ R S + + ++KT++L S + +++A ++E
Sbjct: 156 AIGMQGLVQGQFKDLSEGDKPR-SAEAILMTNHFKTSTLFCASMQMASIVANASSEARDC 214
Query: 193 AFDYGKNLGLAYQLIDDVLD 212
+ +LG A+QL+DD+ D
Sbjct: 215 LHRFSLDLGQAFQLLDDLTD 234
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 31/238 (13%)
Query: 36 TALNVRVPEPLHDGVEDAL-ATELRTRQQ-CIAEI----------------TEMIHVASL 77
+A+++R P +H+ + +L A R R CIA EMIH SL
Sbjct: 72 SAVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGEESVALPAACAVEMIHTMSL 131
Query: 78 LHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA------CVALASLKNTEVV 129
+HDD+ +D+ D RRG + + V G V AVLAGD L+S A A++ + +
Sbjct: 132 IHDDLPCMDNDDLRRGKPTNHKVFGEDV-AVLAGDALISFAFEHLATSTAVSPARVVRAI 190
Query: 130 TLLATVV--EHLVTGETMQMTTSS-DQR-CSMDYYMQKTYYKTASLISNSCKAIALLAGQ 185
LA + + LV G+ + +T+ DQ ++ +KTA L+ + A++ G
Sbjct: 191 GELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLLEAATVLGAIVGGG 250
Query: 186 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 243
+ E + + +GL +Q++DD+LD T +S LGK + D+ +T P L +E+
Sbjct: 251 SDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADKLTYPKLMGLEK 308
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 118/251 (47%), Gaps = 34/251 (13%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
+L A Y G GKR RP ++L +L HDG+ +A E
Sbjct: 30 RLHEAINYSLSAG--GKRIRPLLVLTTLDSLGGNA----HDGLPFGIALE---------- 73
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA--CVALASL 123
MIH SL+HDD+ +D+ D RRG + N ++ A+LAGD LL+ A C+ L
Sbjct: 74 ---MIHTYSLIHDDLPAMDNDDYRRGKLT-NHKRFDEATAILAGDALLTDAFQCILNTQL 129
Query: 124 KNTEV----VTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCK 177
N E+ + LL+T +V G+ + M + +++ + +KT LI +
Sbjct: 130 -NAEIKLSLINLLSTASGSNGMVYGQMLDMQ-GEHKTLTLNELERIHIHKTGELIRAAIV 187
Query: 178 AIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 236
+ ++ A++ L GKN+GL +Q+ DD+LD G+ ++GK SD+ + T
Sbjct: 188 SAGIIMNFNDAQIEQLNI-IGKNVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDKSTYV 246
Query: 237 ILFAMEEFPQL 247
L +E QL
Sbjct: 247 SLLGLEASKQL 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,895,682
Number of Sequences: 539616
Number of extensions: 4277695
Number of successful extensions: 11721
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 11483
Number of HSP's gapped (non-prelim): 109
length of query: 322
length of database: 191,569,459
effective HSP length: 117
effective length of query: 205
effective length of database: 128,434,387
effective search space: 26329049335
effective search space used: 26329049335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)