Query 020685
Match_columns 322
No_of_seqs 212 out of 1150
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02890 geranyl diphosphate s 100.0 5.2E-72 1.1E-76 534.8 34.8 320 2-322 103-422 (422)
2 TIGR02749 prenyl_cyano solanes 100.0 6.1E-70 1.3E-74 509.7 34.2 298 2-322 25-322 (322)
3 CHL00151 preA prenyl transfera 100.0 3.4E-69 7.4E-74 505.4 33.4 297 3-322 27-323 (323)
4 PLN02857 octaprenyl-diphosphat 100.0 1.8E-69 4E-74 517.5 32.0 301 2-322 116-416 (416)
5 TIGR02748 GerC3_HepT heptapren 100.0 4.4E-69 9.6E-74 503.8 32.1 292 3-322 25-319 (319)
6 PRK10888 octaprenyl diphosphat 100.0 1.1E-68 2.5E-73 501.0 32.9 294 3-322 26-323 (323)
7 COG0142 IspA Geranylgeranyl py 100.0 2.6E-68 5.5E-73 498.7 32.7 296 4-322 25-322 (322)
8 PRK10581 geranyltranstransfera 100.0 6.4E-63 1.4E-67 457.3 27.7 258 6-322 29-299 (299)
9 KOG0776 Geranylgeranyl pyropho 100.0 3E-60 6.5E-65 439.9 27.6 287 5-320 91-384 (384)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 1.5E-59 3.3E-64 428.4 29.3 255 5-320 2-259 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 1.6E-57 3.4E-62 415.3 20.5 249 11-281 3-259 (260)
12 KOG0777 Geranylgeranyl pyropho 100.0 4.3E-45 9.4E-50 313.5 20.9 270 6-299 20-293 (322)
13 cd00867 Trans_IPPS Trans-Isopr 100.0 5.2E-44 1.1E-48 321.4 25.2 235 26-320 1-236 (236)
14 KOG0711 Polyprenyl synthetase 100.0 2.4E-41 5.1E-46 303.3 24.0 299 6-322 37-347 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 2E-23 4.4E-28 184.8 26.4 212 63-299 13-227 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.8 0.0011 2.3E-08 58.4 15.0 105 61-174 34-139 (212)
17 PF00494 SQS_PSY: Squalene/phy 97.2 0.023 5E-07 51.8 16.2 199 68-299 22-229 (267)
18 PLN02632 phytoene synthase 96.9 0.18 4E-06 47.8 19.9 138 135-299 141-280 (334)
19 TIGR01559 squal_synth farnesyl 96.9 0.055 1.2E-06 51.3 16.3 151 126-299 100-250 (336)
20 cd00683 Trans_IPPS_HH Trans-Is 96.7 0.1 2.2E-06 47.6 15.7 136 134-299 93-228 (265)
21 TIGR03465 HpnD squalene syntha 96.2 0.17 3.6E-06 46.4 13.9 135 134-299 85-219 (266)
22 TIGR03464 HpnC squalene syntha 95.7 0.45 9.8E-06 43.5 14.6 134 135-299 87-220 (266)
23 cd00687 Terpene_cyclase_nonpla 95.3 1.1 2.5E-05 41.3 16.0 88 125-214 127-219 (303)
24 COG1562 ERG9 Phytoene/squalene 89.8 8.2 0.00018 35.8 12.7 137 133-299 102-238 (288)
25 cd00868 Terpene_cyclase_C1 Ter 87.2 22 0.00048 32.0 17.2 87 127-214 122-213 (284)
26 PRK12884 ubiA prenyltransferas 81.0 44 0.00095 30.5 14.2 157 63-243 40-199 (279)
27 TIGR02748 GerC3_HepT heptapren 68.0 58 0.0013 30.6 10.4 47 181-239 56-102 (319)
28 PRK10888 octaprenyl diphosphat 67.2 43 0.00093 31.6 9.3 47 181-239 57-103 (323)
29 PF03936 Terpene_synth_C: Terp 65.3 1E+02 0.0022 27.4 12.1 86 128-214 138-228 (270)
30 cd00685 Trans_IPPS_HT Trans-Is 59.5 1E+02 0.0022 27.7 10.1 40 188-239 39-78 (259)
31 PRK10581 geranyltranstransfera 55.3 92 0.002 29.0 9.2 59 65-124 208-278 (299)
32 cd00684 Terpene_cyclase_plant_ 54.5 2.5E+02 0.0054 28.5 16.3 105 125-242 354-465 (542)
33 PF06783 UPF0239: Uncharacteri 54.0 14 0.00031 27.6 2.7 23 187-209 15-37 (85)
34 TIGR01474 ubiA_proteo 4-hydrox 52.8 1.9E+02 0.004 26.5 13.8 56 63-119 43-103 (281)
35 TIGR02749 prenyl_cyano solanes 49.0 1.4E+02 0.0031 28.0 9.4 36 192-239 71-106 (322)
36 PF00348 polyprenyl_synt: Poly 47.2 1.7E+02 0.0036 26.4 9.3 49 179-239 24-72 (260)
37 PRK09573 (S)-2,3-di-O-geranylg 47.0 2.3E+02 0.0049 25.8 14.8 55 63-118 40-97 (279)
38 PRK07566 bacteriochlorophyll/c 46.6 2.5E+02 0.0054 26.2 13.1 50 67-117 72-124 (314)
39 PRK12871 ubiA prenyltransferas 44.9 2.6E+02 0.0056 25.9 11.9 46 72-119 54-113 (297)
40 PF01040 UbiA: UbiA prenyltran 44.4 2.2E+02 0.0048 25.0 16.1 148 71-241 34-188 (257)
41 PRK12882 ubiA prenyltransferas 41.0 2.8E+02 0.006 25.2 14.6 54 64-118 42-98 (276)
42 CHL00151 preA prenyl transfera 35.1 2.4E+02 0.0051 26.5 8.6 35 193-239 73-107 (323)
43 TIGR02056 ChlG chlorophyll syn 29.6 4.6E+02 0.01 24.3 13.8 51 66-117 60-113 (306)
44 COG0382 UbiA 4-hydroxybenzoate 29.2 4.5E+02 0.0097 24.0 15.6 157 62-243 49-211 (289)
45 PRK06080 1,4-dihydroxy-2-napht 29.0 3.8E+02 0.0082 24.5 8.8 82 156-239 2-90 (293)
46 PLN00012 chlorophyll synthetas 28.2 87 0.0019 30.3 4.4 34 199-243 263-296 (375)
47 PRK13387 1,4-dihydroxy-2-napht 27.9 1.4E+02 0.003 28.0 5.7 61 156-216 2-67 (317)
48 PRK13105 ubiA prenyltransferas 27.0 1.9E+02 0.0042 26.7 6.3 73 168-251 139-212 (282)
49 PF10776 DUF2600: Protein of u 26.1 1.2E+02 0.0025 28.8 4.7 42 174-219 35-76 (330)
50 KOG1345 Serine/threonine kinas 25.6 64 0.0014 30.1 2.8 21 62-82 127-147 (378)
51 PRK12872 ubiA prenyltransferas 25.1 5.1E+02 0.011 23.4 13.4 35 199-244 172-206 (285)
52 PLN02857 octaprenyl-diphosphat 25.0 3.7E+02 0.0079 26.4 8.2 21 65-85 293-313 (416)
53 PRK12878 ubiA 4-hydroxybenzoat 22.3 2.2E+02 0.0047 26.7 5.9 81 155-236 28-119 (314)
54 COG0142 IspA Geranylgeranyl py 21.9 1.8E+02 0.004 27.2 5.3 35 193-239 71-105 (322)
55 TIGR01476 chlor_syn_BchG bacte 21.8 1.7E+02 0.0037 26.7 5.0 49 65-114 166-215 (283)
56 PRK12883 ubiA prenyltransferas 21.4 6.1E+02 0.013 22.9 13.5 51 66-117 43-96 (277)
57 PRK12870 ubiA 4-hydroxybenzoat 20.5 6.7E+02 0.015 23.0 13.5 54 64-118 50-108 (290)
58 PLN02890 geranyl diphosphate s 20.5 4.6E+02 0.01 25.8 7.9 36 192-239 165-200 (422)
59 PRK09573 (S)-2,3-di-O-geranylg 20.2 6.5E+02 0.014 22.8 9.2 78 157-237 3-83 (279)
No 1
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=5.2e-72 Score=534.75 Aligned_cols=320 Identities=85% Similarity=1.209 Sum_probs=289.3
Q ss_pred CCCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020685 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (322)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDD 81 (322)
+.+.+|.+.++++|++..|.+|||+||.|++++++++|...+...|++..+..+.+..++++.+|+++||||+|||||||
T Consensus 103 v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~AaavEliH~ASLVHDD 182 (422)
T PLN02890 103 VVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTRQQNIAEITEMIHVASLLHDD 182 (422)
T ss_pred HccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhccchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 35678899999999998777799999999999999998643221111111112233456789999999999999999999
Q ss_pred hcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020685 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 161 (322)
Q Consensus 82 I~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 161 (322)
|||++++|||+||+|.+||++ .||++||||+++|+..++...+.++++.+++++..+++||++|+.+..+..+++++|+
T Consensus 183 IiD~s~~RRG~pt~~~~~G~~-~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~~~l~~Gq~ld~~~~~~~~~s~~~Yl 261 (422)
T PLN02890 183 VLDDADTRRGVGSLNVVMGNK-LSVLAGDFLLSRACVALAALKNTEVVSLLATAVEHLVTGETMQITSSREQRRSMDYYM 261 (422)
T ss_pred cccCCCCcCCCcChhhhcChH-HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 999999999999999999999 9999999999999999998888999999999999999999999998877789999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHH
Q 020685 162 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241 (322)
Q Consensus 162 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 241 (322)
+++.+|||+||+.||++||+++|++++..+.+++||+++|+||||+||++||+++++.+||+.++||++||+|+|+++++
T Consensus 262 ~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al 341 (422)
T PLN02890 262 QKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAM 341 (422)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 020685 242 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 321 (322)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 321 (322)
+..+++.+++.+...++++++++.+++.++|++++|+.++++|.++|.+.|+.||+++++++-.+++.|..|++++++|+
T Consensus 342 ~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~s~~~~~~~~r~~L~~L~~~vi~R~ 421 (422)
T PLN02890 342 EEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPETDDEDVLTSRRALIDLTERVITRN 421 (422)
T ss_pred hcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHHHHhcc
Confidence 88888889998888888999999999999999999999999999999999999999874333346899999999999998
Q ss_pred C
Q 020685 322 K 322 (322)
Q Consensus 322 ~ 322 (322)
|
T Consensus 422 k 422 (422)
T PLN02890 422 K 422 (422)
T ss_pred C
Confidence 6
No 2
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=6.1e-70 Score=509.71 Aligned_cols=298 Identities=46% Similarity=0.712 Sum_probs=279.9
Q ss_pred CCCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020685 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (322)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDD 81 (322)
+.+.+|.+.++++|++..| |||+||.|++++++++|+... ..+..+.+|+++|++|+|||||||
T Consensus 25 ~~~~~~~l~~~~~~~~~~g--GKrlRp~l~ll~~~~~~~~~~--------------~~~~~~~~A~avEliH~asLiHDD 88 (322)
T TIGR02749 25 VGARHPILYAAAEHLFSAG--GKRLRPAIVLLVSRATAEQQE--------------LTPRHRRLAEITEMIHTASLVHDD 88 (322)
T ss_pred hCCCChHHHHHHHHHHHCC--CchHHHHHHHHHHHHcCCCcc--------------ccHHHHHHHHHHHHHHHHHHHHcc
Confidence 3467788999999999988 999999999999999875321 123478899999999999999999
Q ss_pred hcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020685 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 161 (322)
Q Consensus 82 I~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 161 (322)
|||+|++|||+||+|++||++ .||++||||+++|++.+++.++.+++..+++++.+++.||++|+.+..+...++++|+
T Consensus 89 iiD~s~~RRG~pt~h~~~G~~-~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~y~ 167 (322)
T TIGR02749 89 VIDESDTRRGIETVHSLFGTR-VAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLNQFDSDLSLEDYL 167 (322)
T ss_pred cccCccccCCCccHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHH
Confidence 999999999999999999999 9999999999999999998888899999999999999999999988776678999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHH
Q 020685 162 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241 (322)
Q Consensus 162 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 241 (322)
+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||+.++||++||+|+|+++++
T Consensus 168 ~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al 247 (322)
T TIGR02749 168 EKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFAL 247 (322)
T ss_pred HHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 020685 242 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 321 (322)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 321 (322)
+..+.+.+++.+...++++++++.+++.++|+++++++++++|.++|++.|+.+|+++ .++.|..|++++++|+
T Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~ 321 (322)
T TIGR02749 248 EEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSP------PREALKELVHFVLSRL 321 (322)
T ss_pred hcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhcC
Confidence 9888888899888888899999999999999999999999999999999999999998 8999999999999997
Q ss_pred C
Q 020685 322 K 322 (322)
Q Consensus 322 ~ 322 (322)
+
T Consensus 322 ~ 322 (322)
T TIGR02749 322 Y 322 (322)
T ss_pred C
Confidence 4
No 3
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=3.4e-69 Score=505.41 Aligned_cols=297 Identities=41% Similarity=0.657 Sum_probs=277.7
Q ss_pred CCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020685 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (322)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI 82 (322)
.+.+|.+.++++|++..| |||+||.|++++++++|++.+. ...++.+|+++|++|+||||||||
T Consensus 27 ~~~~~~l~~~~~~~~~~g--GKr~Rp~L~ll~~~~~~~~~~~--------------~~~~~~~A~aiEllH~asLiHDDi 90 (323)
T CHL00151 27 GSGHPILYAAAKHLFSAG--GKRIRPAIVLLVAKATGGNMEI--------------KTSQQRLAEITEIIHTASLVHDDV 90 (323)
T ss_pred CCCChhHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCccc--------------cHHHHHHHHHHHHHHHHHHHHccc
Confidence 456788999999999988 9999999999999999864321 134678999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 162 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 162 (322)
||+|++|||+||+|.+||++ .||++||||+++|+..++...+..+.+.+++++..++.||.+|..+..+...++++|++
T Consensus 91 ~D~s~~RRG~pt~h~~~G~~-~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~yl~ 169 (323)
T CHL00151 91 IDECSIRRGIPTVHKIFGTK-IAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDFAEGEIRQGLVQFDTTLSILNYIE 169 (323)
T ss_pred ccCccccCCCccHHHHhCCc-chhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 99999999999999999999 99999999999999999988888899999999999999999998876666789999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHh
Q 020685 163 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 242 (322)
Q Consensus 163 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 242 (322)
|+.+|||+||++||.+|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+||++||+|||++++++
T Consensus 170 ~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~ 249 (323)
T CHL00151 170 KSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALT 249 (323)
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 020685 243 EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 322 (322)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 322 (322)
..+.+.+++.....++++++++.+++.++|++++|++++++|.++|.+.|+.||.++ .++.|..+++++++|++
T Consensus 250 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 323 (323)
T CHL00151 250 QNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSS------AKDSLIEIANFIINRLN 323 (323)
T ss_pred cChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhccC
Confidence 888888888877778889999999999999999999999999999999999999988 89999999999999974
No 4
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=1.8e-69 Score=517.54 Aligned_cols=301 Identities=42% Similarity=0.677 Sum_probs=280.5
Q ss_pred CCCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020685 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (322)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDD 81 (322)
+.+.+|.+.++++|++..| |||+||.|++++++++|..... ....+.++.+|+++||||+|||||||
T Consensus 116 ~~~~~~~l~~~~~~~~~~g--GKriRP~Lvll~a~a~g~~~g~-----------~~~~~~~~~lAaaiEliH~ASLIHDD 182 (416)
T PLN02857 116 VGAENPVLMSAAEQIFGAG--GKRMRPALVFLVSRATAELAGL-----------KELTTEHRRLAEITEMIHTASLIHDD 182 (416)
T ss_pred hccCchHHHHHHHHHHhCC--CccHhHHHHHHHHHHhccccCC-----------CcchHHHHHHHHHHHHHHHHHHHHCc
Confidence 3456788999999999989 9999999999999998631100 01224578999999999999999999
Q ss_pred hcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020685 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 161 (322)
Q Consensus 82 I~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 161 (322)
|||+|++|||+||+|.+||++ .|||+||||+++|++.+++.++.++++.+++++..++.||+.|+.+..+...++++|+
T Consensus 183 I~D~s~~RRG~pt~h~~~G~~-~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~~~l~~Gei~q~~~~~~~~~s~~~Yl 261 (416)
T PLN02857 183 VLDESDMRRGKETVHQLYGTR-VAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKDFASGEIKQASSLFDCDVTLDEYL 261 (416)
T ss_pred cccCCcccCCCCCccccCCcc-eeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhHHHHHhcccCCCCCHHHHH
Confidence 999999999999999999999 9999999999999999998888899999999999999999999988777778999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHH
Q 020685 162 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241 (322)
Q Consensus 162 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 241 (322)
+|+++|||+||+.||++|++++|++++..+.+++||+++|+||||+||++||+++++.+||+.++||++||+|+|+++++
T Consensus 262 ~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~~GK~~g~DL~eGK~TlPli~al 341 (416)
T PLN02857 262 LKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFAL 341 (416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhhcCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 020685 242 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 321 (322)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 321 (322)
+..+++.+++.+...+++++++++++++++|+++++++++++|.++|++.|+.||.++ .++.|..|++++++|.
T Consensus 342 ~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~~------~~~~L~~L~~~~~~R~ 415 (416)
T PLN02857 342 EKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPRGA------FRSSLEDMVDYNLERI 415 (416)
T ss_pred hcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhcc
Confidence 9888999999888888899999999999999999999999999999999999999988 8899999999999997
Q ss_pred C
Q 020685 322 K 322 (322)
Q Consensus 322 ~ 322 (322)
+
T Consensus 416 ~ 416 (416)
T PLN02857 416 Y 416 (416)
T ss_pred C
Confidence 5
No 5
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=4.4e-69 Score=503.82 Aligned_cols=292 Identities=29% Similarity=0.502 Sum_probs=269.9
Q ss_pred CCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020685 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (322)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI 82 (322)
.+.+|.+.+++.|++..| |||+||.|++++++++|.+. +.++.+|+++|+||+||||||||
T Consensus 25 ~~~~~~l~~~~~~~~~~g--GKriRp~L~ll~~~~~~~~~-----------------~~~~~~A~aiEliH~asLiHDDI 85 (319)
T TIGR02748 25 QAEHPVLSEASLHLLEAG--GKRIRPVFVLLAGKFGDYDL-----------------DAIKHVAVALELIHMASLVHDDV 85 (319)
T ss_pred ccCchHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHhccc
Confidence 345788999999999988 99999999999999876421 34788999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 162 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 162 (322)
+|+|++|||+||+|.+||++ .||++||||++++++.+++.+..++++.+++++..++.||++|+.+..+...++++|++
T Consensus 86 ~D~s~~RRg~pt~~~~~G~~-~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~Y~~ 164 (319)
T TIGR02748 86 IDDADLRRGRPTIKSKWGNR-IAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEVCRGEIEQIKDKYNFDQNLRTYLR 164 (319)
T ss_pred cCCCCCCCCCcCHHHHhChH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999999999999999 99999999999999999988888899999999999999999999887777789999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHh
Q 020685 163 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 242 (322)
Q Consensus 163 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 242 (322)
|+++|||+||++||.+|++++|++++.++.+++||+++|+||||+||++||+++++.+|||.++||++||+|+|++++++
T Consensus 165 ~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~ 244 (319)
T TIGR02748 165 RIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAME 244 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCh---HHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHh
Q 020685 243 EFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVIT 319 (322)
Q Consensus 243 ~~~---~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~ 319 (322)
..+ .+..++... ++++++++++++.++|++++|+.++.+|.++|.+.|+.||.++ .++.|..+++++++
T Consensus 245 ~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~ 316 (319)
T TIGR02748 245 DPFLKKRIEQVLEET--TAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDGR------AKKPLQEIAKYIGK 316 (319)
T ss_pred CcchhHHHHHHHcCC--CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHh
Confidence 633 344444332 6788999999999999999999999999999999999999988 89999999999999
Q ss_pred ccC
Q 020685 320 RNK 322 (322)
Q Consensus 320 R~~ 322 (322)
|++
T Consensus 317 R~~ 319 (319)
T TIGR02748 317 RKY 319 (319)
T ss_pred ccC
Confidence 975
No 6
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=1.1e-68 Score=501.01 Aligned_cols=294 Identities=34% Similarity=0.529 Sum_probs=269.1
Q ss_pred CCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020685 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (322)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI 82 (322)
.+.+|.+.++.+|++..| ||++||.|++++++++|++. +..+.+|+++|++|+||||||||
T Consensus 26 ~~~~~~l~~~~~~~~~~~--GKrlRp~l~ll~~~~~g~~~-----------------~~~~~~A~avEllH~asLiHDDI 86 (323)
T PRK10888 26 NSDVQLINQLGYYIISGG--GKRIRPMIAVLAARAVGYQG-----------------NAHVTIAALIEFIHTATLLHDDV 86 (323)
T ss_pred cccchhHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCCh-----------------HHHHHHHHHHHHHHHHHHHHccc
Confidence 355677999999999988 99999999999999997532 23688999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 162 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 162 (322)
||++++|||+||+|.+||++ .|||+||||++++++.+++.+..+++..+++++..+++||++|+.+..+...++++|++
T Consensus 87 ~D~s~~RRG~pt~~~~~G~~-~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~ 165 (323)
T PRK10888 87 VDESDMRRGKATANAAFGNA-ASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMR 165 (323)
T ss_pred ccCCcccCCCCCHHHHhCcc-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999999999999999 99999999999999999988888999999999999999999999887666789999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHh
Q 020685 163 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 242 (322)
Q Consensus 163 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 242 (322)
|+.+|||+||++||.+|++++|++++.++.++.||+++|+||||+||++||+++++.+||+.|+||++||+|||++++++
T Consensus 166 ~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~ 245 (323)
T PRK10888 166 VIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMH 245 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hC-hHHHHHHhc---ccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHH
Q 020685 243 EF-PQLRTVVEQ---GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 318 (322)
Q Consensus 243 ~~-~~~~~~l~~---~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~ 318 (322)
.. +..++.+.. ....+++++++.+++.++|+++++++++++|.++|.+.|+.+|+++ .++.|..++++++
T Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~ 319 (323)
T PRK10888 246 HGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTP------WREALIGLAHIAV 319 (323)
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHH
Confidence 63 333333322 1223567899999999999999999999999999999999999998 8999999999999
Q ss_pred hccC
Q 020685 319 TRNK 322 (322)
Q Consensus 319 ~R~~ 322 (322)
+|++
T Consensus 320 ~R~~ 323 (323)
T PRK10888 320 QRDR 323 (323)
T ss_pred hCcC
Confidence 9974
No 7
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-68 Score=498.74 Aligned_cols=296 Identities=35% Similarity=0.532 Sum_probs=270.7
Q ss_pred CCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020685 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVL 83 (322)
Q Consensus 4 ~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~ 83 (322)
+.++.+.+++.|++.+| |||+||.+++++++++|...+. + .+.++.+|++|||+|++||||||||
T Consensus 25 ~~~~~l~~a~~~~~~aG--GKrlRP~l~l~~~~~~~~~~~~------------~-~~~~~~~aaavEliH~~SLiHDDvm 89 (322)
T COG0142 25 SDPELLLEAMRYLLLAG--GKRLRPLLVLLAAEALGIDLET------------G-GNDALDLAAAIELIHTASLIHDDLM 89 (322)
T ss_pred cccHHHHHHHHHHHhcC--CccHhHHHHHHHHHHcCCCccc------------c-hhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 57889999999999999 9999999999999999832221 1 3458999999999999999999999
Q ss_pred CCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020685 84 DDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN--TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 161 (322)
Q Consensus 84 D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 161 (322)
|+|++|||+||+|.+||++ .||++||+|++.||+++++..+ ..+...+++++..++.||.+|+.+..+. +|+++|+
T Consensus 90 D~s~~RRG~pt~~~~~g~~-~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~-~t~e~y~ 167 (322)
T COG0142 90 DDDDLRRGKPTVHAKFGEA-TAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLCGGQALDLAFENKP-VTLEEYL 167 (322)
T ss_pred cCCCccCCCCCchhHhccH-HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHHccCCC-CCHHHHH
Confidence 9999999999999999999 9999999999999999999887 8899999999999999999999998775 9999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHH
Q 020685 162 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241 (322)
Q Consensus 162 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 241 (322)
+|+++|||+||+++|++|+++++++++..+.++.||.++|+||||+||++|+++++..+||++|+|+++||+|||+++++
T Consensus 168 ~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l 247 (322)
T COG0142 168 RVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLAL 247 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 020685 242 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 321 (322)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 321 (322)
+..++-...+........+++++.+++.++|+++++...+..|.++|.+.|+.+|+++ .++.|.++++++++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~------~~~~L~~la~~i~~R~ 321 (322)
T COG0142 248 EKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSE------AKEALLELADFIIKRK 321 (322)
T ss_pred HcCchhhHHHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHhcc
Confidence 9754322133322222229999999999999999999999999999999999999777 8999999999999997
Q ss_pred C
Q 020685 322 K 322 (322)
Q Consensus 322 ~ 322 (322)
+
T Consensus 322 ~ 322 (322)
T COG0142 322 Y 322 (322)
T ss_pred C
Confidence 4
No 8
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=6.4e-63 Score=457.29 Aligned_cols=258 Identities=29% Similarity=0.439 Sum_probs=231.9
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI--~ 83 (322)
++.+.+++.|++..| |||+||.|++++++++|.+. +.+..+|+++|++|+|||||||| |
T Consensus 29 ~~~l~~~~~~~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~aSLiHDDip~~ 89 (299)
T PRK10581 29 NTPVVEAMQYGALLG--GKRLRPFLVYATGQMFGVST-----------------NTLDAPAAAVECIHAYSLIHDDLPAM 89 (299)
T ss_pred chHHHHHHHHHHhcC--cccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 567999999999988 99999999999999998532 23678999999999999999999 9
Q ss_pred CCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC--------HHHHHHHHHH--HHHHHhhhHhhhcccCCC
Q 020685 84 DDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN--------TEVVTLLATV--VEHLVTGETMQMTTSSDQ 153 (322)
Q Consensus 84 D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~--------~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~ 153 (322)
|+|++|||+||+|.+||++ .|||+||+|++.|++.+++... .+++..++.+ +..++.||.+|+.+..+
T Consensus 90 D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~ld~~~~~~- 167 (299)
T PRK10581 90 DDDDLRRGLPTCHVKFGEA-NAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQALDLEAEGK- 167 (299)
T ss_pred cCCCccCCCcChHHHhCcc-hHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHHHHhccCC-
Confidence 9999999999999999999 9999999999999999986532 1345555553 46799999999988754
Q ss_pred CCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCC
Q 020685 154 RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA-EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 232 (322)
Q Consensus 154 ~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~-~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk 232 (322)
..++++|++|+++|||+||.+||.+|++++|.++ +.++.+++||.++|+||||+||++|++++++.+||+.++|+++||
T Consensus 168 ~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk 247 (299)
T PRK10581 168 QVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGK 247 (299)
T ss_pred CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCC
Confidence 6899999999999999999999999999999864 578899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 020685 233 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLD 312 (322)
Q Consensus 233 ~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~ 312 (322)
+|||+++ +++++++.+++|.++|.+.|+.+|.++. .++.|..
T Consensus 248 ~T~p~l~---------------------------------~~e~a~~~a~~~~~~A~~~l~~l~~~~~-----~~~~L~~ 289 (299)
T PRK10581 248 STYPALL---------------------------------GLEQARKKARDLIDDARQSLDQLAAQSL-----DTSALEA 289 (299)
T ss_pred CCHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCcCCch-----hHHHHHH
Confidence 9999999 4568899999999999999999998771 3789999
Q ss_pred HHHHHHhccC
Q 020685 313 LTHRVITRNK 322 (322)
Q Consensus 313 l~~~~~~R~~ 322 (322)
|++++++|++
T Consensus 290 l~~~~~~R~~ 299 (299)
T PRK10581 290 LANYIIQRDK 299 (299)
T ss_pred HHHHHHhccC
Confidence 9999999986
No 9
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3e-60 Score=439.92 Aligned_cols=287 Identities=44% Similarity=0.639 Sum_probs=271.0
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcC-CCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh-
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALN-VRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV- 82 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI- 82 (322)
.++.+..+++|.+..+ ||++||.+|++.++++| +.. ..++.+|+++||||++|||||||
T Consensus 91 ~~~~i~~a~ry~~la~--gKr~rP~l~~~~~e~~~~g~~-----------------~~q~~~A~i~EMIHtaSLIHDDv~ 151 (384)
T KOG0776|consen 91 EPLLISEAMRYLLLAG--GKRVRPLLCLAACELVGSGDE-----------------SSQRSLAEIVEMIHTASLIHDDVP 151 (384)
T ss_pred ccchhHHHHHHHHHhc--ccccCchhhhhHHHhcccccc-----------------HHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4677888899999999 99999999999999998 422 34889999999999999999999
Q ss_pred -cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccC---C-CCCCH
Q 020685 83 -LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSS---D-QRCSM 157 (322)
Q Consensus 83 -~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~---~-~~~~~ 157 (322)
||++++|||+||.|++||++ +|||+||||+++|++.++.+.++.+++.+++++.+++.|++.+....+ . ....+
T Consensus 152 ~mD~~d~RRGkpt~h~vfG~k-~AvLaGD~LLa~A~~~la~l~n~~v~elm~~aI~dLv~ge~~~~~~~~~~~d~~~~~~ 230 (384)
T KOG0776|consen 152 CMDDADLRRGKPTNHKVFGNK-MAVLAGDALLALASEHLASLENPVVVELMASAIADLVRGEFTQGLVAGEGLDLDDVGL 230 (384)
T ss_pred cccccccccCCCCcchhhcch-hhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhhhcccccccccccCCcch
Confidence 99999999999999999999 999999999999999999999999999999999999999999987763 2 23578
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHH
Q 020685 158 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 237 (322)
Q Consensus 158 ~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~ 237 (322)
+.|+.+..+|||+|++.+|++|++++|.+++.++.+++||+++|++||+.||++||+...+.+||+.+.|+..|+.|+|+
T Consensus 231 e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~Dl~~g~lT~P~ 310 (384)
T KOG0776|consen 231 EYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKDLKAGKLTAPV 310 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHH
Q 020685 238 LFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRV 317 (322)
Q Consensus 238 l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~ 317 (322)
++++++.|++.+.+.+.+.++.+.+...+.+. ++..|..++++|.++|.+.|+.||.++ +|+.|+.|+.++
T Consensus 311 Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~---~v~~a~~la~~~~~~Al~~l~~~p~s~------ar~aL~~l~~~~ 381 (384)
T KOG0776|consen 311 LFALEKSPELREKLEREFSEPLDGFDADKAVP---GVALAKYLARRHNNKALEALQSLPRSE------ARSALENLVLAV 381 (384)
T ss_pred hhhhhhChHHHHHHHHhccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCch------HHHHHHHHHHHH
Confidence 99999999999999999999888888888887 899999999999999999999999999 999999999999
Q ss_pred Hhc
Q 020685 318 ITR 320 (322)
Q Consensus 318 ~~R 320 (322)
++|
T Consensus 382 ~~r 384 (384)
T KOG0776|consen 382 LTR 384 (384)
T ss_pred hcC
Confidence 887
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=1.5e-59 Score=428.43 Aligned_cols=255 Identities=40% Similarity=0.577 Sum_probs=239.2
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLD 84 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D 84 (322)
.++.+.++++|++..| ||++||.+++++++++|++. .+.+..+|+++|++|+||||||||||
T Consensus 2 ~~~~l~~~~~~~~~~~--GK~~Rp~l~~~~~~~~g~~~----------------~~~~~~la~aiEllh~asLIhDDI~D 63 (259)
T cd00685 2 EVELLREALRYLLLAG--GKRLRPLLVLLAARALGGPE----------------LEAALRLAAAIELLHTASLVHDDVMD 63 (259)
T ss_pred CchHHHHHHHHHHHcC--CccHhHHHHHHHHHHhCCCc----------------hHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4577999999999878 99999999999999998642 13478999999999999999999999
Q ss_pred CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020685 85 DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN---TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 161 (322)
Q Consensus 85 ~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~---~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 161 (322)
+|..|||+||+|.+||+. .|||+||+|++.+++.+++... .++++.+++++..++.||++|+.+..+..+++++|+
T Consensus 64 ~s~~RRG~p~~~~~~G~~-~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~ 142 (259)
T cd00685 64 NSDLRRGKPTVHKVFGNA-TAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDTDVTEEEYL 142 (259)
T ss_pred CCcccCCCCcHHHHhCcc-cHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHH
Confidence 999999999999999999 9999999999999999998776 789999999999999999999998876678999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHH
Q 020685 162 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241 (322)
Q Consensus 162 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 241 (322)
+|+.+|||+||.++|.+|+++++++++..+.+++||+++|++|||+||++|++++++.+||+.++||++||+|||+++++
T Consensus 143 ~~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l 222 (259)
T cd00685 143 RIIRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL 222 (259)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred hhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 020685 242 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 320 (322)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R 320 (322)
++.+..|.++|...|+.+|.+. .+..|..+++++++|
T Consensus 223 ------------------------------------~~~~~~~~~~a~~~l~~~~~~~------~~~~l~~~~~~~~~r 259 (259)
T cd00685 223 ------------------------------------RELAREYEEKALEALKALPESP------AREALRALADFILER 259 (259)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHcC
Confidence 6888999999999999999887 788999999999987
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=1.6e-57 Score=415.34 Aligned_cols=249 Identities=33% Similarity=0.544 Sum_probs=218.0
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 020685 11 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR 90 (322)
Q Consensus 11 ~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~~~RR 90 (322)
+++.|++..| ||++||.|++++++++|.+ .+.+..+|+++|++|+||||||||+|+|++||
T Consensus 3 ~~~~~~~~~~--GK~~Rp~l~~~~~~~~~~~-----------------~~~~~~~a~avEliH~asLIhDDI~D~s~~RR 63 (260)
T PF00348_consen 3 EPARYYILRG--GKRIRPLLVLLAAEALGGD-----------------PEKAIPLAAAVELIHAASLIHDDIIDNSDLRR 63 (260)
T ss_dssp HHHHHHHHSS--SCHHHHHHHHHHHHHTTCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEET
T ss_pred HHHHHHhhCC--CccHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Confidence 5677888878 9999999999999999842 34589999999999999999999999999999
Q ss_pred CcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC----CH---HHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHH
Q 020685 91 GIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK----NT---EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 163 (322)
Q Consensus 91 G~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~----~~---~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~ 163 (322)
|+||+|.+||++ .|||+||+|++.|++.++... .. .+...+...+.....||..|+.+... ..++++|++|
T Consensus 64 G~pt~~~~~G~~-~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~~~~y~~i 141 (260)
T PF00348_consen 64 GKPTVHKKFGNA-IAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDK-DPTEEEYLEI 141 (260)
T ss_dssp TEECHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-STSHHHHHHH
T ss_pred CCcccccccccc-chhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccc-cccHHHHHHH
Confidence 999999999999 999999999999999998876 12 34445555666677789999887655 7899999999
Q ss_pred HhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhh
Q 020685 164 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 243 (322)
Q Consensus 164 ~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~ 243 (322)
+++|||+||++||++|++++|.+++..+.+++||+++|+||||+||++|++++++.+||+.++||++||+|||+++++++
T Consensus 142 ~~~KTg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~ 221 (260)
T PF00348_consen 142 IRLKTGSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALER 221 (260)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHH
T ss_pred HhhcchHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ch-HHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHH
Q 020685 244 FP-QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELA 281 (322)
Q Consensus 244 ~~-~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 281 (322)
.+ ..++++... ....+.+.+.+.+..++.+++++.++
T Consensus 222 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 222 AREELRELLQEA-YGKEDSEEALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HHHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHHhhc
Confidence 54 455555443 33446677788888888888887765
No 12
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.3e-45 Score=313.46 Aligned_cols=270 Identities=21% Similarity=0.288 Sum_probs=246.1
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~ 85 (322)
...|.+|.+|++..+ ||.+|.-|.+.+.+++..+. ++...+..++||+|++||+.|||.|+
T Consensus 20 ~~ill~Py~yilq~P--GKqfR~~L~~afNhwl~~P~-----------------dkLaii~~ivemLHNsSLLIDDIEDN 80 (322)
T KOG0777|consen 20 ESILLKPYNYILQKP--GKQFRLNLIVAFNHWLNLPK-----------------DKLAIISQIVEMLHNSSLLIDDIEDN 80 (322)
T ss_pred HHHHhchHHHHHhCc--hHHHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHHHHhccceeecccccc
Confidence 356788999999977 99999999999999996521 34677899999999999999999999
Q ss_pred CCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCC-CCCHHHHHHHH
Q 020685 86 ADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKT 164 (322)
Q Consensus 86 ~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~y~~~~ 164 (322)
|+.|||.|++|..||++ ..||+++|++.+|++.+..+..++.+.+|.+.+.+++.||.+|+.|+... ++|+++|..|+
T Consensus 81 s~LRRG~pvaHsIyGvp-StINtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQGldIYWRD~~tcPtee~Yk~Mv 159 (322)
T KOG0777|consen 81 SPLRRGQPVAHSIYGVP-STINTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQGLDIYWRDFLTCPTEEMYKNMV 159 (322)
T ss_pred chhhcCCcchhhhccCc-chhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCcceeeeccCcCCCHHHHHHHH
Confidence 99999999999999999 99999999999999999999889999999999999999999999998664 67999999999
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhhC
Q 020685 165 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF 244 (322)
Q Consensus 165 ~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~ 244 (322)
-.|||.||.++.++.-.++...++ +..+-.-+|+.|||+|||+++...+....|+++.||.|||.++|+++|+...
T Consensus 160 ~~KTGGLF~La~rLMqlfS~~ked----l~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~ 235 (322)
T KOG0777|consen 160 MNKTGGLFRLALRLMQLFSHHKED----LVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTK 235 (322)
T ss_pred HHhcccHHHHHHHHHHHHHhcchh----HHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcC
Confidence 999999999999999999866555 4556678999999999999998888888999999999999999999999764
Q ss_pred ---hHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 020685 245 ---PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 299 (322)
Q Consensus 245 ---~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~ 299 (322)
.+...++.+...+-+-...++.++++.|+.+|++....++..+|...++....++
T Consensus 236 ~q~~Qvl~ILrqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~Np 293 (322)
T KOG0777|consen 236 GQTEQVLRILRQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGENP 293 (322)
T ss_pred CchHHHHHHHHHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3567788888888888889999999999999999999999999999999988888
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=5.2e-44 Score=321.37 Aligned_cols=235 Identities=40% Similarity=0.603 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhhh-cCCchh
Q 020685 26 FRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV-MGNKVL 104 (322)
Q Consensus 26 lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~~~RRG~pt~~~~-~G~~~~ 104 (322)
+||.+++++++++|+.. +.+..+++++|+||++++|||||+|++..|||+|++|.+ ||+. .
T Consensus 1 ~r~~~~~~~~~~~~~~~-----------------~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~-~ 62 (236)
T cd00867 1 SRPLLVLLLARALGGDL-----------------EAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNA-L 62 (236)
T ss_pred CcHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHh-H
Confidence 59999999999998632 357889999999999999999999999999999999999 9999 9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcC
Q 020685 105 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG 184 (322)
Q Consensus 105 Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~ 184 (322)
|++.||++++.++..+......++.+.+++.+..++.||.+|+.+..+...++++|.+++++|||++|..+|..++++++
T Consensus 63 ai~~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~ 142 (236)
T cd00867 63 AILAGDYLLARAFQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSG 142 (236)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC
Confidence 99999999999999998877788899999999999999999999876557899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHH
Q 020685 185 QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIA 264 (322)
Q Consensus 185 ~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~ 264 (322)
.+++..+.+++||.++|+||||.||++|++++.+.+|| .++||.+||+|||++++
T Consensus 143 ~~~~~~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~------------------------ 197 (236)
T cd00867 143 ADDEQAEALKDYGRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA------------------------ 197 (236)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH------------------------
Confidence 99988999999999999999999999999999999999 99999999999999995
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 020685 265 LEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 320 (322)
Q Consensus 265 ~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R 320 (322)
.+.+..+.+++.+.+..++...+ ..+..+..++.++.+|
T Consensus 198 -------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r 236 (236)
T cd00867 198 -------------RERAAEYAEEAYAALEALPPSLP----RARRALIALADFLYRR 236 (236)
T ss_pred -------------HHHHHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHHHHhC
Confidence 45566666777777777655441 1457788888888775
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=303.26 Aligned_cols=299 Identities=18% Similarity=0.141 Sum_probs=255.2
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~ 85 (322)
.+.+.....|+.. | ||..|+..++.+.+++..+... .++....+..++|+||+|++++||.|||||+
T Consensus 37 ~~~~~~~L~yN~~-G--GK~nRgl~vv~s~~~L~~~~~l----------~~~~~~~a~~lGw~vElLQaffLiaDDIMDn 103 (347)
T KOG0711|consen 37 TEWLKEVLDYNVI-G--GKLNRGLSVVDSFKALVEPRKL----------DEEELQLALILGWCVELLQAFFLVADDIMDN 103 (347)
T ss_pred HHHHHHHHhccCc-c--cccccchhHHHHHHHhcCccCC----------CHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3566777788865 8 9999999999999999753221 2355567888999999999999999999999
Q ss_pred CCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcC----C-CHHHHHHHHHHHHHHHhhhHhhhcccC--CCCCCHH
Q 020685 86 ADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL----K-NTEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMD 158 (322)
Q Consensus 86 ~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~----~-~~~~~~~~~~~~~~~~~Gq~~d~~~~~--~~~~~~~ 158 (322)
|.+|||+||||.+.|+++.|||.+-+|-+....+|.+. . ..++++.|.+....++.||+++-.... ....|++
T Consensus 104 S~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~f~T~lGdllt~~~~~~~ls~fsl~ 183 (347)
T KOG0711|consen 104 SKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVTFQTELGDLLTTPEGNKDLSKFSLE 183 (347)
T ss_pred ccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhhhccccCcccchhHhhhhHH
Confidence 99999999999999998899999998888777777642 1 357889999999999999777654322 2357899
Q ss_pred HHHHHHhhhhhHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHH
Q 020685 159 YYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 236 (322)
Q Consensus 159 ~y~~~~~~KTa~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp 236 (322)
.|..|+.+|||.| |.+|..++..++| .+.+.......+...+|..||++||+||++|||+.+|| .|+||.++|+||.
T Consensus 184 ~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp~vtgk-iGtDIqDnKCsWl 262 (347)
T KOG0711|consen 184 KYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDPEVTGK-IGTDIQDNKCSWL 262 (347)
T ss_pred HHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCChhhcCC-CCCccccCceeee
Confidence 9999999999999 9999999999998 45667778899999999999999999999999999999 5999999999999
Q ss_pred HHHHHhh-ChHHHHHHhcccC--ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 020685 237 ILFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 313 (322)
Q Consensus 237 ~l~al~~-~~~~~~~l~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l 313 (322)
+.+|++. ++++.+++...+. +++.+..+..+..+.+.-..-.+.-.....+..+.|+.++.+.. ..+..+..+
T Consensus 263 v~~al~~~~~eq~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~yE~~~~~~Ik~~I~~~~~~~~----~~~~v~t~f 338 (347)
T KOG0711|consen 263 VVKALQRASAEQYKILFENYGKPEAEAVAKVKALYKELHLPALFIEYEEGSYKKIKKLISQVDEDTG----VKVKVGTSF 338 (347)
T ss_pred hHHHHhhcCHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHccCCCc----chhhhHHHH
Confidence 9999998 6788888877765 56789999999999998888888888999999999998877663 256677789
Q ss_pred HHHHHhccC
Q 020685 314 THRVITRNK 322 (322)
Q Consensus 314 ~~~~~~R~~ 322 (322)
+..+.+|++
T Consensus 339 l~kiykr~k 347 (347)
T KOG0711|consen 339 LNKIYKRSK 347 (347)
T ss_pred HHHHHhhcC
Confidence 999999975
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.93 E-value=2e-23 Score=184.83 Aligned_cols=212 Identities=31% Similarity=0.438 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhhh---cCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 020685 63 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV---MGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 139 (322)
Q Consensus 63 ~~la~avEllh~asLihDDI~D~~~~RRG~pt~~~~---~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 139 (322)
..++.+++.+|+++++||||+|++..||++|++|.. +|.. .+++.|+.++..++..+.......+...+.+.+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLP-EAILAGDLLLADAFEELAREGSPEALEILAEALLDL 91 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCch-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999988 9999 999999999999999988776678899999999999
Q ss_pred HhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccc
Q 020685 140 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 219 (322)
Q Consensus 140 ~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~ 219 (322)
+.||..|+.+..+..++.++|..+.+.|||.++...|..++...+.+......+..++.++|++||+.||+.|+..+...
T Consensus 92 ~~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~ 171 (243)
T cd00385 92 LEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAER 171 (243)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 99999999987655689999999999999999999999998888777777888999999999999999999999876532
Q ss_pred cCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 020685 220 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 299 (322)
Q Consensus 220 ~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~ 299 (322)
. +|+.|+|.+++.+....-... ..+..++.++.+...+..+.+++.+.+..+....
T Consensus 172 ~---------~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
T cd00385 172 G---------EGKCTLPVLYALEYGVPAEDL---------------LLVEKSGSLEEALEELAKLAEEALKELNELILSL 227 (243)
T ss_pred h---------CCchHHHHHHHHHhCChhhHH---------------HHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 1 488999999988764221111 1677888999999999999999999988876654
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.80 E-value=0.0011 Score=58.43 Aligned_cols=105 Identities=19% Similarity=0.204 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 020685 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 140 (322)
Q Consensus 61 ~~~~la~avEllh~asLihDDI~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 140 (322)
.....+.++-++|.|...||.|-. ...+++...-.+ . ..||+|||+-+.-+.+|+..++..+++.+++++..++
T Consensus 34 ~~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~~k~R----Q-LtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~eiN 107 (212)
T PF07307_consen 34 EAERYALATMLVQIALDTHDEVDN-AGDESEESSKER----Q-LTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKEIN 107 (212)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc-ccccccHHHHhh----h-hhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 356678889999999999999966 333222222222 4 7899999999999999999999999999999999999
Q ss_pred hhhHhhhcccCCCCCCHHHHHHHH-hhhhhHHHHH
Q 020685 141 TGETMQMTTSSDQRCSMDYYMQKT-YYKTASLISN 174 (322)
Q Consensus 141 ~Gq~~d~~~~~~~~~~~~~y~~~~-~~KTa~l~~~ 174 (322)
+....=-... ..+.++|++.+ .-+|+-+..+
T Consensus 108 E~K~~ly~~~---~~~~e~~~~~~~~ies~l~~~~ 139 (212)
T PF07307_consen 108 ELKMSLYQKK---KETAEEYLESVVTIESALFQSF 139 (212)
T ss_pred HHHHHHHHhh---hCCHHHHHHHHHHHHHHHHHHH
Confidence 8886433222 34677776543 3344444333
No 17
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=97.20 E-value=0.023 Score=51.84 Aligned_cols=199 Identities=18% Similarity=0.114 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCC---CCCcchhhhhcCCchh-----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 020685 68 ITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNKVL-----AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 139 (322)
Q Consensus 68 avEllh~asLihDDI~D~~~~---RRG~pt~~~~~G~~~~-----Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 139 (322)
++-.+..+....|||.|.... ++-+-.+|+..=+... ......--+..++..+.... .+-...+..+
T Consensus 22 ~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~~~~~-----~l~~~~l~~l 96 (267)
T PF00494_consen 22 AVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADLVRRY-----GLPREPLLEL 96 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHHHCCS-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHHHHHH-----hhhHHHHHHH
Confidence 455677888899999998873 1111122221100000 01111222223332222211 1334556788
Q ss_pred HhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccc
Q 020685 140 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 219 (322)
Q Consensus 140 ~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~ 219 (322)
..|...|+.... ..|++++...++.-+|++..+.+.+...- .+. ......+.++|.|+|+.|=+.|+
T Consensus 97 i~~~~~dl~~~~--~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nilRd~------ 163 (267)
T PF00494_consen 97 IDGMEMDLEFTP--YETFADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNILRDI------ 163 (267)
T ss_dssp HHHHHHCTT-S----SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHHHTH------
T ss_pred HHHhcccccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHHHHh------
Confidence 899999987542 56899999988888898887766543221 222 35677889999999999877776
Q ss_pred cCCchhhh-hhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 020685 220 LGKGSLSD-IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 298 (322)
Q Consensus 220 ~GK~~~~D-l~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~ 298 (322)
+.| +..|++-+|.=..-+..=...+++.....++ .+.. .+......++.+.++|...+..+|+.
T Consensus 164 -----~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~~~-~~~~---------~~~~~~~~A~~~l~~a~~~~~~l~~~ 228 (267)
T PF00494_consen 164 -----PEDALRRGRIYLPLDDLRRFGVTPEDLLAGRPRSE-RLRA---------LIRELAARARAHLDEARAGLSALPPP 228 (267)
T ss_dssp -----HHH-HHTT---S-HHHHHHTTSSHHHHHHHG-GGH-HHHH---------HHHHHHHHHHHHHHHHHHGGGGS--T
T ss_pred -----HHHHHhcccccCCchhHHHcCCCHHHHHhcccCCH-HHHH---------HHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 678 8899999998765443211222222221111 1222 24566788899999999999999665
Q ss_pred C
Q 020685 299 N 299 (322)
Q Consensus 299 ~ 299 (322)
.
T Consensus 229 ~ 229 (267)
T PF00494_consen 229 R 229 (267)
T ss_dssp T
T ss_pred h
Confidence 5
No 18
>PLN02632 phytoene synthase
Probab=96.93 E-value=0.18 Score=47.76 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=89.1
Q ss_pred HHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhchhhcccc
Q 020685 135 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLD 212 (322)
Q Consensus 135 ~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~--~~~~~~l~~~g~~lG~afQi~DD~ld 212 (322)
.+.+++.|..+|+... ...|++++..-++.--|++..+.+.+ ++..+ +...+.+...+.++|+|+|+.|=+.|
T Consensus 141 ~~~~li~g~~~Dl~~~--~~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILRD 215 (334)
T PLN02632 141 PFRDMIEGMRMDLVKS--RYENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILRD 215 (334)
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888998898653 34688888888887777776666654 33222 12224467789999999999988877
Q ss_pred ccCCccccCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 020685 213 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 292 (322)
Q Consensus 213 ~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l 292 (322)
+ +.|+..|++-+|.=..-+..=....++... .++ .+.. .+......++.|+++|...+
T Consensus 216 v-----------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~-~~~-~~~~---------l~~~~~~~Ar~~~~~a~~~l 273 (334)
T PLN02632 216 V-----------GEDARRGRVYLPQDELAQFGLTDEDIFAGK-VTD-KWRA---------FMKFQIKRARMYFAEAEEGV 273 (334)
T ss_pred H-----------HHHHhCCceeCCHHHHHHcCCCHHHHhcCC-CCH-HHHH---------HHHHHHHHHHHHHHHHHHhH
Confidence 7 578889999998655333221122233221 122 2211 23334467888999999999
Q ss_pred ccCCCCC
Q 020685 293 DSLPENN 299 (322)
Q Consensus 293 ~~lp~~~ 299 (322)
..+|...
T Consensus 274 ~~lp~~~ 280 (334)
T PLN02632 274 SELDPAS 280 (334)
T ss_pred hhCCHHh
Confidence 8888654
No 19
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=96.93 E-value=0.055 Score=51.28 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 020685 126 TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 205 (322)
Q Consensus 126 ~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQ 205 (322)
+.....+.+....|..|...++........|.++|..-.++=-|..-.+.+.+-+. +|...+......+++..+|+|+|
T Consensus 100 ~~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQ 178 (336)
T TIGR01559 100 PKYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQ 178 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHH
Confidence 44666777778888999988876542112688888877666655554444444332 22221111234678999999999
Q ss_pred hhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHH
Q 020685 206 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 285 (322)
Q Consensus 206 i~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 285 (322)
+.|=+.|+ ++|+.+|++=||.=-.-+......++.. ++.-+...+ .++.....+..|.
T Consensus 179 lTNIlRDv-----------~ED~~~GR~YlP~e~l~~~g~~~~dl~~-----~~~~~~~~~------~l~~lv~~A~~~~ 236 (336)
T TIGR01559 179 KTNIIRDY-----------LEDINEGRMFWPREIWSKYAKKLGDFKK-----PENSDKALQ------CLNELVTNALHHA 236 (336)
T ss_pred HHHHHHHH-----------HhHHhCCCCCCCHHHHHHcCCCHHHhcC-----ccccHHHHH------HHHHHHHHHHHHH
Confidence 99988887 5678889999996533222222222211 111111111 3455567788888
Q ss_pred HHHHHHhccCCCCC
Q 020685 286 NLAAAAIDSLPENN 299 (322)
Q Consensus 286 ~~a~~~l~~lp~~~ 299 (322)
+.|...+..++...
T Consensus 237 ~~al~yl~~l~~~~ 250 (336)
T TIGR01559 237 TDCLTYLSRLRDQS 250 (336)
T ss_pred HHHHHHHHhCCCcc
Confidence 88888888886554
No 20
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=96.67 E-value=0.1 Score=47.60 Aligned_cols=136 Identities=20% Similarity=0.200 Sum_probs=89.8
Q ss_pred HHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccc
Q 020685 134 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 213 (322)
Q Consensus 134 ~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~ 213 (322)
..+..++.|...|+... ...|++++...++.-.|+...+.+.+ ++.... +....++.++|.|+|+.|=+.|+
T Consensus 93 ~~~~~li~g~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~~---~~~~~~A~~lG~AlqltnilRdv 164 (265)
T cd00683 93 EPFRDLLAGMAMDLDKR--RYETLDELDEYCYYVAGVVGLMLLRV---FGASSD---EAALERARALGLALQLTNILRDV 164 (265)
T ss_pred HHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999998753 35688888887777777776655543 332122 23567899999999999888776
Q ss_pred cCCccccCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 020685 214 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 293 (322)
Q Consensus 214 ~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~ 293 (322)
+.|+..|++.+|.=..-+..-...+++.. . ..+.+.. .+......++.+...|...+.
T Consensus 165 -----------~eD~~~gR~YlP~d~l~~~gv~~~~l~~~-~-~~~~~~~---------~~~~~~~~A~~~~~~a~~~~~ 222 (265)
T cd00683 165 -----------GEDARRGRIYLPREELARFGVTLEDLLAP-E-NSPAFRA---------LLRRLIARARAHYREALAGLA 222 (265)
T ss_pred -----------HHHHccCCCcCCHHHHHHcCCCHHHHcCC-C-CCHHHHH---------HHHHHHHHHHHHHHHHHHhHH
Confidence 57788899999976644332222223322 1 1222222 245556778999999999999
Q ss_pred cCCCCC
Q 020685 294 SLPENN 299 (322)
Q Consensus 294 ~lp~~~ 299 (322)
.+|...
T Consensus 223 ~lp~~~ 228 (265)
T cd00683 223 ALPRRS 228 (265)
T ss_pred hCCHhh
Confidence 998443
No 21
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=96.16 E-value=0.17 Score=46.36 Aligned_cols=135 Identities=16% Similarity=0.082 Sum_probs=89.1
Q ss_pred HHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccc
Q 020685 134 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 213 (322)
Q Consensus 134 ~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~ 213 (322)
..+..++.|...|+... ...|.+++...++.-.|++..+.+.+ ++..++ .....+.++|.|+|+.|=+.|+
T Consensus 85 ~~~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~~----~~~~~a~~lG~AlqltnilRdv 155 (266)
T TIGR03465 85 EDFLEVIDGMEMDLEQT--RYPDFAELDLYCDRVAGAVGRLSARI---FGATDA----RTLEYAHHLGRALQLTNILRDV 155 (266)
T ss_pred HHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 34577889999998754 35688998888888778877776654 333332 3467789999999999877776
Q ss_pred cCCccccCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 020685 214 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 293 (322)
Q Consensus 214 ~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~ 293 (322)
+.|+..|++.+|.=..-+.+-...+++.. ..+ +.+.. .+..-...++.+.++|...+.
T Consensus 156 -----------~eD~~~gR~ylP~~~l~~~gv~~~~l~~~-~~~-~~~~~---------~~~~l~~~A~~~l~~a~~~~~ 213 (266)
T TIGR03465 156 -----------GEDARRGRIYLPAEELQRFGVPAADILEG-RYS-PALAA---------LCRFQAERARAHYAEADALLP 213 (266)
T ss_pred -----------HHHHhCCCeecCHHHHHHcCCCHHHhcCC-CCC-HHHHH---------HHHHHHHHHHHHHHHHHHhhh
Confidence 57788899999975544332122222222 112 22222 234455668888888888888
Q ss_pred cCCCCC
Q 020685 294 SLPENN 299 (322)
Q Consensus 294 ~lp~~~ 299 (322)
.+|...
T Consensus 214 ~~p~~~ 219 (266)
T TIGR03465 214 ACDRRA 219 (266)
T ss_pred hCCHhh
Confidence 888543
No 22
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.70 E-value=0.45 Score=43.51 Aligned_cols=134 Identities=10% Similarity=-0.036 Sum_probs=86.9
Q ss_pred HHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhcccccc
Q 020685 135 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 214 (322)
Q Consensus 135 ~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~ 214 (322)
.+..++.|...|+... ...|.+++...++.-.|++..+.+.+ ++..+++ ...++.++|.|+|+.|=+.|+
T Consensus 87 ~~~~li~~~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl- 156 (266)
T TIGR03464 87 PFLDLLDAFRQDVVVT--RYATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV- 156 (266)
T ss_pred HHHHHHHHHHHhccCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh-
Confidence 4567778888888654 24688888887777777777766543 3333333 236788999999999877775
Q ss_pred CCccccCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 020685 215 GTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 294 (322)
Q Consensus 215 ~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~ 294 (322)
+.|...|++.+|.=..-+.+=...+++.. ..++ .+.. .+......++.+..+|...+..
T Consensus 157 ----------~eD~~~gR~YLP~~~l~~~Gv~~edl~~~-~~~~-~~~~---------~~~~~~~~A~~~~~~a~~~~~~ 215 (266)
T TIGR03464 157 ----------GVDYRKGRVYLPRDDLARFGVSEEDLAAG-RATP-ALRE---------LMAFEVSRTRALLDRGAPLAAR 215 (266)
T ss_pred ----------HHHHhcCCccCCHHHHHHcCCCHHHHhcC-CCCH-HHHH---------HHHHHHHHHHHHHHHHHHhHHh
Confidence 57788899999865543322112223322 1122 2222 2445556788999999999999
Q ss_pred CCCCC
Q 020685 295 LPENN 299 (322)
Q Consensus 295 lp~~~ 299 (322)
+|...
T Consensus 216 lp~~~ 220 (266)
T TIGR03464 216 VDGRL 220 (266)
T ss_pred CCHhh
Confidence 98543
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=95.28 E-value=1.1 Score=41.33 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcC--CCHHHHH--HHHHHHHH
Q 020685 125 NTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--LAFDYGKN 199 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~--~~~~~~~--~l~~~g~~ 199 (322)
.......|.+.+...+.++..+..+... ..++.++|+++=..-.|..+.+.+ +-...| .++.... .++.+-..
T Consensus 127 ~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l--~~~~~g~~lp~~~~~~~~~~~l~~~ 204 (303)
T cd00687 127 SAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGL--SEFIGGPEVPAAVRLDPVMRALEAL 204 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHH--HHHhcCCCCCHHHHhChHHHHHHHH
Confidence 4667778888888888999888766533 357999999763333344432221 112222 2444322 36777888
Q ss_pred HHHHhchhhcccccc
Q 020685 200 LGLAYQLIDDVLDFT 214 (322)
Q Consensus 200 lG~afQi~DD~ld~~ 214 (322)
.+...-+.||+..|-
T Consensus 205 ~~~~~~l~NDl~S~~ 219 (303)
T cd00687 205 ASDAIALVNDIYSYE 219 (303)
T ss_pred HHHHHHHHHHHHhhH
Confidence 888889999999884
No 24
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=89.79 E-value=8.2 Score=35.84 Aligned_cols=137 Identities=16% Similarity=0.140 Sum_probs=82.3
Q ss_pred HHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhcccc
Q 020685 133 ATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 212 (322)
Q Consensus 133 ~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld 212 (322)
...+.++..|+..|+.... ..+++++..-++.-.|....+. ..+++-.+ ..........+|.|+|+.|=+.|
T Consensus 102 ~~~~~~~~da~~~Dl~~~~--y~~~~eL~~Yc~~vAg~vG~l~---~~Il~~~~---~~~~~~~a~~lG~A~QlvNilRd 173 (288)
T COG1562 102 REAFPALIDAMRMDLDRTR--YLDFEELEEYCYGVAGAVGLLL---ARILGPDK---DAATRAYARGLGLALQLVNILRD 173 (288)
T ss_pred HHHHHHHHHHHHHHhhhcc--ccCHHHHHHHHHHhHHHHHHHH---HHHhCccc---chhhHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999987653 2345555554444444433332 23444322 12344445559999999988887
Q ss_pred ccCCccccCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 020685 213 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 292 (322)
Q Consensus 213 ~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l 292 (322)
+ +.|...|+.-+|.=-...-.-....++.....+ .... .+++--..++.+...|...+
T Consensus 174 v-----------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~--~~~~---------~~~~~~~~ar~~~~~a~~~~ 231 (288)
T COG1562 174 V-----------GEDRRRGRVYLPAEELARFGVSEADLLAGRVDD--AFRE---------LMRFEADRARDHLAEARRGL 231 (288)
T ss_pred h-----------HHHHhCCcccCCHHHHHHhCCCHHHHHcccchh--HHHH---------HHHHHHHHHHHHHHHHHHhh
Confidence 6 678889999888544332222222333221111 1211 34566778889999999999
Q ss_pred ccCCCCC
Q 020685 293 DSLPENN 299 (322)
Q Consensus 293 ~~lp~~~ 299 (322)
..+|...
T Consensus 232 ~~lp~~~ 238 (288)
T COG1562 232 PALPGRA 238 (288)
T ss_pred hhCCccc
Confidence 9998776
No 25
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=87.19 E-value=22 Score=32.03 Aligned_cols=87 Identities=9% Similarity=-0.029 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhhHHHHHHHH-HHHHHcCCCH---HHHHHHHHHHHHHH
Q 020685 127 EVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCK-AIALLAGQTA---EVAILAFDYGKNLG 201 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~~~-~ga~la~~~~---~~~~~l~~~g~~lG 201 (322)
.....+.+.+...+.+...+..+.. ...++.++|+.+-..-.|..+.+.+. .+.- -..++ .....+..+....+
T Consensus 122 ~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~~~~g-~~l~~~~~~~~~~~~~l~~~~~ 200 (284)
T cd00868 122 ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSFLGMG-DILPEEAFEWLPSYPKLVRASS 200 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHHHHcC-CCCCHHHHHHhhhhHHHHHHHH
Confidence 5667788888888888888877653 34689999998755544444332221 1111 11233 34556777778888
Q ss_pred HHhchhhcccccc
Q 020685 202 LAYQLIDDVLDFT 214 (322)
Q Consensus 202 ~afQi~DD~ld~~ 214 (322)
..-=+.||+..|-
T Consensus 201 ~~~~l~NDl~S~~ 213 (284)
T cd00868 201 TIGRLLNDIASYE 213 (284)
T ss_pred HHHHHhccchHHH
Confidence 8888899998884
No 26
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=81.04 E-value=44 Score=30.48 Aligned_cols=157 Identities=15% Similarity=0.054 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCC---CCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 020685 63 QCIAEITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 139 (322)
Q Consensus 63 ~~la~avEllh~asLihDDI~D~~~~---RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 139 (322)
.-...++=++|.+..+..|+.|-+.- |+.+|-+..+...+ .|...+-.+...++-...-. +....- + ....+
T Consensus 40 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~-~a~~~~~~~~~~~~~~~~~l-~~~~~~-~--~~~~~ 114 (279)
T PRK12884 40 LLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRR-EALLLAILLFILGLIAAYLI-SPLAFL-V--VILVS 114 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHH-hHHHHH-H--HHHHH
Confidence 34456677999999999999766543 55566555555556 66666655544443222212 121110 0 00011
Q ss_pred HhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccc
Q 020685 140 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 219 (322)
Q Consensus 140 ~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~ 219 (322)
..+=..-...+. ..-..+.. .|..+..+...|....+......-.+.-+.-...+.+++..|+.|..
T Consensus 115 ~~~~~Ys~~lK~--~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e----- 181 (279)
T PRK12884 115 VLGILYNWKLKE--YGLIGNLY------VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVE----- 181 (279)
T ss_pred HHHHHHHHhhcc--ccchhHHH------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh-----
Confidence 111111111111 11111111 22334455555555444332222223333445556677788888874
Q ss_pred cCCchhhhhhcCCCCHHHHHHHhh
Q 020685 220 LGKGSLSDIRHGIITAPILFAMEE 243 (322)
Q Consensus 220 ~GK~~~~Dl~egk~Tlp~l~al~~ 243 (322)
.|-+.|+.|+|+.+--+.
T Consensus 182 ------~D~~~G~~Tl~v~~G~~~ 199 (279)
T PRK12884 182 ------GDRLRGARTLAILYGEKI 199 (279)
T ss_pred ------hHHHcCCeeechHhcHHH
Confidence 456789999999885543
No 27
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=67.98 E-value=58 Score=30.55 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=30.3
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 181 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
.+.+.+.+....+...-+.+=.|.-|.||+.|- +++|.|++|....|
T Consensus 56 ~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRg~pt~~~~~ 102 (319)
T TIGR02748 56 KFGDYDLDAIKHVAVALELIHMASLVHDDVIDD------------ADLRRGRPTIKSKW 102 (319)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhccccCC------------CCCCCCCcCHHHHh
Confidence 344555554444555666777888999999773 34666777765544
No 28
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=67.22 E-value=43 Score=31.55 Aligned_cols=47 Identities=30% Similarity=0.270 Sum_probs=31.1
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 181 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
...|.+.+....+...-+.+=.+..|.||+.|- +++|.|++|+-..|
T Consensus 57 ~~~g~~~~~~~~~A~avEllH~asLiHDDI~D~------------s~~RRG~pt~~~~~ 103 (323)
T PRK10888 57 RAVGYQGNAHVTIAALIEFIHTATLLHDDVVDE------------SDMRRGKATANAAF 103 (323)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHcccccC------------CcccCCCCCHHHHh
Confidence 334444443444555667777889999999763 45777888876655
No 29
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=65.25 E-value=1e+02 Score=27.43 Aligned_cols=86 Identities=9% Similarity=0.029 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHH
Q 020685 128 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ----TAEVAILAFDYGKNLGL 202 (322)
Q Consensus 128 ~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~----~~~~~~~l~~~g~~lG~ 202 (322)
....|.+.+.....|...+..+... ..+|.++|+.+=+.-+|..+.+.+..-.+ ... +++....-..+-...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 216 (270)
T PF03936_consen 138 QIKRFRNSWREYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFAL-EFALGELPPEVLEHPPMLRRLAAD 216 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHC-SSCHTHHHHHHHHTTHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhC-CCccccccHHHHHhchHHHHHHHH
Confidence 4445788888888888888777543 36899999987555555544433321111 211 12222221114455555
Q ss_pred Hhchhhcccccc
Q 020685 203 AYQLIDDVLDFT 214 (322)
Q Consensus 203 afQi~DD~ld~~ 214 (322)
.--+.||+..|-
T Consensus 217 ~~~l~NDl~S~~ 228 (270)
T PF03936_consen 217 IIRLVNDLYSYK 228 (270)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhcccchhh
Confidence 555669988883
No 30
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=59.53 E-value=1e+02 Score=27.74 Aligned_cols=40 Identities=35% Similarity=0.306 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 188 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 188 ~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
+....+...-+-+=.++-|.||+.|= +++|.|++|+-..|
T Consensus 39 ~~~~~la~aiEllh~asLIhDDI~D~------------s~~RRG~p~~~~~~ 78 (259)
T cd00685 39 EAALRLAAAIELLHTASLVHDDVMDN------------SDLRRGKPTVHKVF 78 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC------------CcccCCCCcHHHHh
Confidence 44455666667788899999999663 23566666665544
No 31
>PRK10581 geranyltranstransferase; Provisional
Probab=55.29 E-value=92 Score=28.97 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCC------------CCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC
Q 020685 65 IAEITEMIHVASLLHDDVLDD------------ADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 124 (322)
Q Consensus 65 la~avEllh~asLihDDI~D~------------~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~ 124 (322)
+...-+.+=.|+=|.|||.|- ++.+.|++|+-..+|.. .|-....-+...|.+.|..++
T Consensus 208 l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e-~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 208 LDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLE-QARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhCc
Confidence 444556777889999999883 34567777777777777 677666666777777777664
No 32
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=54.45 E-value=2.5e+02 Score=28.49 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHhhhhhHHHHH-HHHHHHHHc-CCCHHHHHHHH---HHHH
Q 020685 125 NTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISN-SCKAIALLA-GQTAEVAILAF---DYGK 198 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~~~~~y~~~~~~KTa~l~~~-~~~~ga~la-~~~~~~~~~l~---~~g~ 198 (322)
.......+.+.+..++.+-..+..|... ..++.++|+++-..-+|....+ .+..| .+ ..+++..+.+. .+..
T Consensus 354 ~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~ 431 (542)
T cd00684 354 GSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLG--MGDILTEEAFEWLESRPKLVR 431 (542)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHh--cCCCCCHHHHHHHhccHHHHH
Confidence 3456677888888899999999888643 3689999999765554444322 12222 11 13555444333 5777
Q ss_pred HHHHHhchhhccccccCCccccCCchhhhhhcCC-CCHHHHHHHh
Q 020685 199 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI-ITAPILFAME 242 (322)
Q Consensus 199 ~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk-~Tlp~l~al~ 242 (322)
..+....+.||+..+-.. ...|. .+.+.+|.-+
T Consensus 432 ~~~~i~rL~NDi~S~~kE-----------~~rGdv~n~V~~ymke 465 (542)
T cd00684 432 ASSTIGRLMNDIATYEDE-----------MKRGDVASSIECYMKE 465 (542)
T ss_pred HHHHHHHHhcChhhhHHH-----------HhcCCcccHHHHHHHh
Confidence 788889999999888432 23344 5777777543
No 33
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=53.97 E-value=14 Score=27.57 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhhc
Q 020685 187 AEVAILAFDYGKNLGLAYQLIDD 209 (322)
Q Consensus 187 ~~~~~~l~~~g~~lG~afQi~DD 209 (322)
+...+.+-+||..+|-.||+.==
T Consensus 15 et~~e~llRYGLf~GAIFQliCi 37 (85)
T PF06783_consen 15 ETFFENLLRYGLFVGAIFQLICI 37 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999998743
No 34
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=52.76 E-value=1.9e+02 Score=26.54 Aligned_cols=56 Identities=14% Similarity=-0.027 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCC----CC-CCcchhhhhcCCchhHHHHHHHHHHHHHHH
Q 020685 63 QCIAEITEMIHVASLLHDDVLDDAD----TR-RGIGSLNFVMGNKVLAVLAGDFLLSRACVA 119 (322)
Q Consensus 63 ~~la~avEllh~asLihDDI~D~~~----~R-RG~pt~~~~~G~~~~Ail~gd~L~~~a~~~ 119 (322)
.-+..++=++|.+..+..|+.|.+- .| +.+|-+.-+...+ .|...+-.+...++-.
T Consensus 43 ~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~-~a~~~~~~~~~~~~~l 103 (281)
T TIGR01474 43 GLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVR-QAILFLLVQLLVALGV 103 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHH-HHHHHHHHHHHHHHHH
Confidence 3344556688999999999977543 23 3677777777777 7877776666655533
No 35
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=48.98 E-value=1.4e+02 Score=28.03 Aligned_cols=36 Identities=36% Similarity=0.366 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 192 LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 192 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
.+...-+.+=.|.-|.||+.|- +++|.|++|+-..|
T Consensus 71 ~~A~avEliH~asLiHDDiiD~------------s~~RRG~pt~h~~~ 106 (322)
T TIGR02749 71 RLAEITEMIHTASLVHDDVIDE------------SDTRRGIETVHSLF 106 (322)
T ss_pred HHHHHHHHHHHHHHHHcccccC------------ccccCCCccHHHHh
Confidence 3455556677788999999773 45777888876655
No 36
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=47.20 E-value=1.7e+02 Score=26.42 Aligned_cols=49 Identities=31% Similarity=0.240 Sum_probs=33.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 179 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 179 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
.+.+.+.+.+....+...-+.+=.++-|.||+.|= +++|.|++|.-..|
T Consensus 24 ~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D~------------s~~RRG~pt~~~~~ 72 (260)
T PF00348_consen 24 AAEALGGDPEKAIPLAAAVELIHAASLIHDDIIDN------------SDLRRGKPTVHKKF 72 (260)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc------------cccCCCCccccccc
Confidence 33444556666666777778888899999999763 34566777665555
No 37
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=46.97 E-value=2.3e+02 Score=25.85 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCC---CCcchhhhhcCCchhHHHHHHHHHHHHHH
Q 020685 63 QCIAEITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKVLAVLAGDFLLSRACV 118 (322)
Q Consensus 63 ~~la~avEllh~asLihDDI~D~~~~R---RG~pt~~~~~G~~~~Ail~gd~L~~~a~~ 118 (322)
.-...++=++|.+..+..|+.|-+.-| +.+|-+..+...+ .|...+-.+...++-
T Consensus 40 ~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~-~a~~~~~~l~~~~~~ 97 (279)
T PRK09573 40 ILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLK-EAKIFSITLFIVGLI 97 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHH-HHHHHHHHHHHHHHH
Confidence 334456669999999999998876544 5678777777788 888888777766653
No 38
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=46.55 E-value=2.5e+02 Score=26.21 Aligned_cols=50 Identities=8% Similarity=-0.119 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCC---CCcchhhhhcCCchhHHHHHHHHHHHHH
Q 020685 67 EITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKVLAVLAGDFLLSRAC 117 (322)
Q Consensus 67 ~avEllh~asLihDDI~D~~~~R---RG~pt~~~~~G~~~~Ail~gd~L~~~a~ 117 (322)
.+.=++|.++.++.|+.|.+.-| +.+|...-+...+ .|...+-.++..++
T Consensus 72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~-~a~~~~~~l~~~~~ 124 (314)
T PRK07566 72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLR-WVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHH-HHHHHHHHHHHHHH
Confidence 44557899999999999876655 4466666666677 77777766665554
No 39
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=44.86 E-value=2.6e+02 Score=25.95 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhcCCCC-----CC---------CCcchhhhhcCCchhHHHHHHHHHHHHHHH
Q 020685 72 IHVASLLHDDVLDDAD-----TR---------RGIGSLNFVMGNKVLAVLAGDFLLSRACVA 119 (322)
Q Consensus 72 lh~asLihDDI~D~~~-----~R---------RG~pt~~~~~G~~~~Ail~gd~L~~~a~~~ 119 (322)
.|.+ .++.|+.|.+. .| +.+|....+...+ .|...+-.+...++-.
T Consensus 54 ~~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~-~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 54 FEAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSK-NAFALFILLAAVTSAL 113 (297)
T ss_pred HHHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHH-HHHHHHHHHHHHHHHH
Confidence 4555 58888855432 12 3566666666777 7777776666555433
No 40
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=44.37 E-value=2.2e+02 Score=24.96 Aligned_cols=148 Identities=18% Similarity=0.136 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhhcCCCCCCC--C---cchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhhhH
Q 020685 71 MIHVASLLHDDVLDDADTRR--G---IGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGET 144 (322)
Q Consensus 71 llh~asLihDDI~D~~~~RR--G---~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~ 144 (322)
++|.+.-+.||+.|-+.-|. + +|-...+...+ .+...+-.++..+.-.....+. .-++-.+.-.+. ...-..
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~-~~~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~-~~Ys~~ 111 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPR-QALIFALILLLLGLLLALLLGPWFLLILLLGFLLG-LLYSPP 111 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHH-HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHhhh
Confidence 99999999999987776665 3 34445556655 5555555555544322221211 111111111111 111110
Q ss_pred hhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhchhhccccccCCccccCCc
Q 020685 145 MQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 223 (322)
Q Consensus 145 ~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~-~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~ 223 (322)
.-++.. .-..+.. .|..+.....+|+...+.+ +...-.+.-+.--++......+|+.|+.
T Consensus 112 ~~lk~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~--------- 172 (257)
T PF01040_consen 112 LRLKRR----PLWGELV------VALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIE--------- 172 (257)
T ss_pred hhhcce----eccchhh------HHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHH---------
Confidence 011110 0001110 1222334444444444443 2222233344456777888888888885
Q ss_pred hhhhhhcCCCCHHHHHHH
Q 020685 224 SLSDIRHGIITAPILFAM 241 (322)
Q Consensus 224 ~~~Dl~egk~Tlp~l~al 241 (322)
+|.+.|+.|+|+.+-.
T Consensus 173 --~D~~~g~~Tl~v~~G~ 188 (257)
T PF01040_consen 173 --GDRKAGRRTLPVLLGE 188 (257)
T ss_pred --HHHHcCCcchHHHHHH
Confidence 4567899999998843
No 41
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=41.03 E-value=2.8e+02 Score=25.18 Aligned_cols=54 Identities=11% Similarity=-0.048 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCC---CCCCcchhhhhcCCchhHHHHHHHHHHHHHH
Q 020685 64 CIAEITEMIHVASLLHDDVLDDAD---TRRGIGSLNFVMGNKVLAVLAGDFLLSRACV 118 (322)
Q Consensus 64 ~la~avEllh~asLihDDI~D~~~---~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~ 118 (322)
-+..+.=++|.++.+..|+.|-+. .|+.+|-.......+ .|...+-.+...++-
T Consensus 42 l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~-~a~~~~~~l~~~g~~ 98 (276)
T PRK12882 42 LAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPR-GALAFSILLFAAGVA 98 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHH-HHHHHHHHHHHHHHH
Confidence 345556789999999999977654 357778777777777 888777777666653
No 42
>CHL00151 preA prenyl transferase; Reviewed
Probab=35.14 E-value=2.4e+02 Score=26.49 Aligned_cols=35 Identities=31% Similarity=0.362 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 193 AFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 193 l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
+...-+.+=.+.-|.||+.|= +++|.|++|+-..|
T Consensus 73 ~A~aiEllH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 107 (323)
T CHL00151 73 LAEITEIIHTASLVHDDVIDE------------CSIRRGIPTVHKIF 107 (323)
T ss_pred HHHHHHHHHHHHHHHcccccC------------ccccCCCccHHHHh
Confidence 444456666788899999662 45777888876655
No 43
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=29.61 E-value=4.6e+02 Score=24.31 Aligned_cols=51 Identities=6% Similarity=-0.165 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCC---CCcchhhhhcCCchhHHHHHHHHHHHHH
Q 020685 66 AEITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKVLAVLAGDFLLSRAC 117 (322)
Q Consensus 66 a~avEllh~asLihDDI~D~~~~R---RG~pt~~~~~G~~~~Ail~gd~L~~~a~ 117 (322)
..+.=++|.++-++.|+.|.+..| |.+|........+ .+...+-.++..++
T Consensus 60 ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~-~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 60 LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEP-EVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHH-HHHHHHHHHHHHHH
Confidence 355679999999999998876434 4455555555666 67666655554443
No 44
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=29.23 E-value=4.5e+02 Score=24.03 Aligned_cols=157 Identities=18% Similarity=0.091 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc-----hhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 020685 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIG-----SLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 136 (322)
Q Consensus 62 ~~~la~avEllh~asLihDDI~D~~~~RRG~p-----t~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~ 136 (322)
..-...++=+.-++..+.+|+.|-+--|+..| -+..+-..+ .|....-.++..++-..--+......-.+.-.+
T Consensus 49 ~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~-~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~ 127 (289)
T COG0382 49 LLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVK-EALLLAILLLLLGLALALLLNPLAFLLSLAALV 127 (289)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44455566678888999999988776665555 444444555 555555444444432221121111111111111
Q ss_pred HHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhchhhccccccC
Q 020685 137 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTG 215 (322)
Q Consensus 137 ~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~ 215 (322)
..... -.. +...-..++. -|..+..+...|+...+. .....-.+.-+..-..++|.+..|+.|..+
T Consensus 128 l~~~Y-----~~~--Kr~~~~~~~~------lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~ 194 (289)
T COG0382 128 LALAY-----PFL--KRFTFLPQLV------LGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEG 194 (289)
T ss_pred HHHHH-----HHh--hcCCchHHHH------HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 11111 111 1122223322 345566666666655543 233344566777788889999999999865
Q ss_pred CccccCCchhhhhhcCCCCHHHHHHHhh
Q 020685 216 TSASLGKGSLSDIRHGIITAPILFAMEE 243 (322)
Q Consensus 216 ~~~~~GK~~~~Dl~egk~Tlp~l~al~~ 243 (322)
| -+.|..|.|+.+-.+.
T Consensus 195 D-----------~~~G~~s~~~~~G~~~ 211 (289)
T COG0382 195 D-----------RKAGLKSLPVLFGIKK 211 (289)
T ss_pred h-----------HhcCCcchHHHhCchh
Confidence 5 4668888888886544
No 45
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=29.00 E-value=3.8e+02 Score=24.48 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=47.7
Q ss_pred CHHHHHHHHhhhhhHHHHHHHHHHHHHcCC--CHHHHH-HHHHHHH-HHHHHhchhhccccccC--Ccc-ccCCchhhhh
Q 020685 156 SMDYYMQKTYYKTASLISNSCKAIALLAGQ--TAEVAI-LAFDYGK-NLGLAYQLIDDVLDFTG--TSA-SLGKGSLSDI 228 (322)
Q Consensus 156 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~--~~~~~~-~l~~~g~-~lG~afQi~DD~ld~~~--~~~-~~GK~~~~Dl 228 (322)
+...|++..+-+|-.....|+.+|+.++.. ...... .+.-++- .+=.+-.+.||+-|+.. |.. ..|+ ..=+
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~--~r~l 79 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGP--LRAI 79 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC--cccc
Confidence 456799999999988888899998887621 111111 1111111 11223478999999953 221 1221 2336
Q ss_pred hcCCCCHHHHH
Q 020685 229 RHGIITAPILF 239 (322)
Q Consensus 229 ~egk~Tlp~l~ 239 (322)
..|+.|..-+.
T Consensus 80 ~~G~is~~~~~ 90 (293)
T PRK06080 80 GRGGISPKQVK 90 (293)
T ss_pred cCCCCCHHHHH
Confidence 67887776543
No 46
>PLN00012 chlorophyll synthetase; Provisional
Probab=28.20 E-value=87 Score=30.26 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=26.8
Q ss_pred HHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhh
Q 020685 199 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 243 (322)
Q Consensus 199 ~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~ 243 (322)
-+++++-+.+|+.|+. .|.+.|+.|+|+.+-.+.
T Consensus 263 l~~lai~ivnd~~Die-----------~Dr~aG~~TLpV~~G~~~ 296 (375)
T PLN00012 263 IAGLGIAIVNDFKSIE-----------GDRALGLQSLPVAFGVET 296 (375)
T ss_pred HHHHHHHHHhhhcchh-----------hHHHcCCcccceeechHH
Confidence 4778889999998874 466889999999885543
No 47
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=27.94 E-value=1.4e+02 Score=28.04 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=37.8
Q ss_pred CHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHhc----hhhccccccCC
Q 020685 156 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLG-LAYQ----LIDDVLDFTGT 216 (322)
Q Consensus 156 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG-~afQ----i~DD~ld~~~~ 216 (322)
+...|++.++-||-..-..|+.+|+.++-......+...-+..-+| +++| +.||+-|+..+
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g 67 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKA 67 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 4567999999999988888999998876311000111111222233 3345 68999999654
No 48
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=26.97 E-value=1.9e+02 Score=26.68 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhhChH
Q 020685 168 TASLISNSCKAIALLAGQTAEVAILAFDYGKNL-GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQ 246 (322)
Q Consensus 168 Ta~l~~~~~~~ga~la~~~~~~~~~l~~~g~~l-G~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~ 246 (322)
.+.+|..+..+|....+..-.....+--.+--+ ..++.+.+++.|+ -.|-++||.|+|+.+-.+..-.
T Consensus 139 ~~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDi-----------e~Dr~~G~~Tlpv~lG~~~a~~ 207 (282)
T PRK13105 139 SSTHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDV-----------VADREAGIASIATVLGARRTVR 207 (282)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcch-----------HhHHHcCCccchHHhcHHHHHH
Q ss_pred HHHHH
Q 020685 247 LRTVV 251 (322)
Q Consensus 247 ~~~~l 251 (322)
+...+
T Consensus 208 ~~~~l 212 (282)
T PRK13105 208 LAVGL 212 (282)
T ss_pred HHHHH
No 49
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=26.09 E-value=1.2e+02 Score=28.84 Aligned_cols=42 Identities=24% Similarity=0.170 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccc
Q 020685 174 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 219 (322)
Q Consensus 174 ~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~ 219 (322)
+-|+.|++.+-.+......+ ..+=+|||-+.||||=..|...
T Consensus 35 FHceGgsi~al~~~~~~~~~----i~fIVAyQTIsDYLDNLcDrs~ 76 (330)
T PF10776_consen 35 FHCEGGSIYALLPGENRDEL----IRFIVAYQTISDYLDNLCDRST 76 (330)
T ss_pred cCCcchhhhhhcCCccHhhH----HHHHHHHHHHHHHHHhhhhccC
Confidence 45777887775444322222 3466899999999999887643
No 50
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=25.60 E-value=64 Score=30.06 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 020685 62 QQCIAEITEMIHVASLLHDDV 82 (322)
Q Consensus 62 ~~~la~avEllh~asLihDDI 82 (322)
..+++.|+|++|.=-|||.|+
T Consensus 127 ~~ql~SAi~fMHsknlVHRdl 147 (378)
T KOG1345|consen 127 FAQLLSAIEFMHSKNLVHRDL 147 (378)
T ss_pred HHHHHHHHHHhhccchhhccc
Confidence 457899999999999999997
No 51
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=25.11 E-value=5.1e+02 Score=23.38 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=26.6
Q ss_pred HHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhhC
Q 020685 199 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF 244 (322)
Q Consensus 199 ~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~ 244 (322)
-+-.+.++..|+.|..+ |-+.|+.|+|+.+-.++.
T Consensus 172 l~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~lG~~~t 206 (285)
T PRK12872 172 LKSFIREIVFDIKDIEG-----------DRKSGLKTLPIVLGKERT 206 (285)
T ss_pred HHHHHHHHHHhcccchh-----------HHHcCCcccchhcchHHH
Confidence 34567788999888854 557799999999976543
No 52
>PLN02857 octaprenyl-diphosphate synthase
Probab=24.97 E-value=3.7e+02 Score=26.40 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q 020685 65 IAEITEMIHVASLLHDDVLDD 85 (322)
Q Consensus 65 la~avEllh~asLihDDI~D~ 85 (322)
+...-+.+=.|+=|.|||+|-
T Consensus 293 l~~fG~~LGiAFQI~DDiLD~ 313 (416)
T PLN02857 293 MYEYGKNLGLAFQVVDDILDF 313 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444455677789999999883
No 53
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=22.34 E-value=2.2e+02 Score=26.68 Aligned_cols=81 Identities=16% Similarity=0.061 Sum_probs=49.0
Q ss_pred CCHHHHHHHH---hhhhhHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHh-----chhhccccccCCccccCCc
Q 020685 155 CSMDYYMQKT---YYKTASLISNSCKAIALLAGQTAE---VAILAFDYGKNLGLAY-----QLIDDVLDFTGTSASLGKG 223 (322)
Q Consensus 155 ~~~~~y~~~~---~~KTa~l~~~~~~~ga~la~~~~~---~~~~l~~~g~~lG~af-----Qi~DD~ld~~~~~~~~GK~ 223 (322)
.+...|.+.. +-||-.+.-.|+..|..++..... ..+...-+-.-+|..+ .+.||+.|.--|.. ..++
T Consensus 28 ~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~-~~Rt 106 (314)
T PRK12878 28 PWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAK-VART 106 (314)
T ss_pred hhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCC
Confidence 4667899999 888999999999999998754200 0010111222334333 78999999654532 1111
Q ss_pred hhhhhhcCCCCHH
Q 020685 224 SLSDIRHGIITAP 236 (322)
Q Consensus 224 ~~~Dl~egk~Tlp 236 (322)
...=+..|+.|..
T Consensus 107 ~~RPl~sG~is~~ 119 (314)
T PRK12878 107 RSRPLPSGQVSRK 119 (314)
T ss_pred CCCCCCCCCcCHH
Confidence 1233667887744
No 54
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=21.93 E-value=1.8e+02 Score=27.25 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 193 AFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 193 l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
+...-+.+=.+.=|.||+.| .+|+|.|++|....|
T Consensus 71 ~aaavEliH~~SLiHDDvmD------------~s~~RRG~pt~~~~~ 105 (322)
T COG0142 71 LAAAIELIHTASLIHDDLMD------------DDDLRRGKPTVHAKF 105 (322)
T ss_pred HHHHHHHHHHHHHHHhhccc------------CCCccCCCCCchhHh
Confidence 33344555566778999954 257889999988887
No 55
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=21.79 E-value=1.7e+02 Score=26.67 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhhcC-CCCCCCCcchhhhhcCCchhHHHHHHHHHH
Q 020685 65 IAEITEMIHVASLLHDDVLD-DADTRRGIGSLNFVMGNKVLAVLAGDFLLS 114 (322)
Q Consensus 65 la~avEllh~asLihDDI~D-~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~ 114 (322)
++..+-+.-.+.+...|+.| +.+.+.|++|.-..+|.+ .|...--.++.
T Consensus 166 ~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~-~a~~l~~~l~~ 215 (283)
T TIGR01476 166 VALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVK-RAAIVAVTTIN 215 (283)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHH-HHHHHHHHHHH
Confidence 34455566666788999988 555678999999999999 77765544433
No 56
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=21.39 E-value=6.1e+02 Score=22.90 Aligned_cols=51 Identities=14% Similarity=-0.033 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCC---CCCCcchhhhhcCCchhHHHHHHHHHHHHH
Q 020685 66 AEITEMIHVASLLHDDVLDDAD---TRRGIGSLNFVMGNKVLAVLAGDFLLSRAC 117 (322)
Q Consensus 66 a~avEllh~asLihDDI~D~~~---~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~ 117 (322)
..++=+.|.+..+..|+.|-+. .|+.+|-+..+...+ .|...+-.+...++
T Consensus 43 ~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~-~a~~~~~~l~~~g~ 96 (277)
T PRK12883 43 FLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRK-AALYYSLLLFAVGL 96 (277)
T ss_pred HHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHH-HHHHHHHHHHHHHH
Confidence 3455677889999999977544 345566666666666 77766665555443
No 57
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=20.55 E-value=6.7e+02 Score=23.03 Aligned_cols=54 Identities=15% Similarity=-0.040 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCC-----CCcchhhhhcCCchhHHHHHHHHHHHHHH
Q 020685 64 CIAEITEMIHVASLLHDDVLDDADTR-----RGIGSLNFVMGNKVLAVLAGDFLLSRACV 118 (322)
Q Consensus 64 ~la~avEllh~asLihDDI~D~~~~R-----RG~pt~~~~~G~~~~Ail~gd~L~~~a~~ 118 (322)
-...++=++|.+..+..|+.|.+--| |.+|-+..+-..+ .|++.+-.+...++-
T Consensus 50 l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~-~a~~~~~~~~~~~~~ 108 (290)
T PRK12870 50 IIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVK-VGIVIAIVALLCAAG 108 (290)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHH-HHHHHHHHHHHHHHH
Confidence 34455668999999999997655432 3677777777777 888877766666553
No 58
>PLN02890 geranyl diphosphate synthase
Probab=20.53 E-value=4.6e+02 Score=25.76 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 192 LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 192 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
.+...-+.+=.|.-|.||+.|= +|+|.|+.|+-..|
T Consensus 165 ~~AaavEliH~ASLVHDDIiD~------------s~~RRG~pt~~~~~ 200 (422)
T PLN02890 165 NIAEITEMIHVASLLHDDVLDD------------ADTRRGVGSLNVVM 200 (422)
T ss_pred HHHHHHHHHHHHHHHHcccccC------------CCCcCCCcChhhhc
Confidence 3555566777888999999773 45677777765554
No 59
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=20.20 E-value=6.5e+02 Score=22.77 Aligned_cols=78 Identities=17% Similarity=0.068 Sum_probs=45.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHcCC-CHHHHH-HHHHHHHHH-HHHhchhhccccccCCccccCCchhhhhhcCCC
Q 020685 157 MDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAI-LAFDYGKNL-GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 233 (322)
Q Consensus 157 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~-~~~~~~-~l~~~g~~l-G~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 233 (322)
...|++.++.++......|+..|..++.. ...... .+.-+|.-+ -.+=.+.||+.|..-|... | ...=+-.|+.
T Consensus 3 ~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~--~-~~Rpl~sG~i 79 (279)
T PRK09573 3 IKAYFELIRPKNCIGASIGAIIGYLIASNFKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKIN--K-PERPIPSGRI 79 (279)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccccccc--C-CCCCcCCCcc
Confidence 46799999999998888888889888743 221111 111112111 1122689999999655422 1 1233666776
Q ss_pred CHHH
Q 020685 234 TAPI 237 (322)
Q Consensus 234 Tlp~ 237 (322)
|...
T Consensus 80 s~~~ 83 (279)
T PRK09573 80 SLKE 83 (279)
T ss_pred CHHH
Confidence 6443
Done!