Query 020685
Match_columns 322
No_of_seqs 212 out of 1150
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 06:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 2.4E-72 8.2E-77 528.1 30.6 294 2-321 46-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 6.6E-72 2.2E-76 525.1 32.8 295 2-322 33-333 (341)
3 3rmg_A Octaprenyl-diphosphate 100.0 8.9E-72 3.1E-76 523.2 29.0 294 2-322 28-326 (334)
4 3apz_A Geranyl diphosphate syn 100.0 1.2E-71 4E-76 526.4 29.2 320 2-322 29-348 (348)
5 3pko_A Geranylgeranyl pyrophos 100.0 5.6E-71 1.9E-75 517.8 30.4 296 2-322 36-334 (334)
6 3nf2_A Putative polyprenyl syn 100.0 3E-71 1E-75 522.3 28.4 295 2-321 24-343 (352)
7 3lmd_A Geranylgeranyl pyrophos 100.0 3.1E-71 1.1E-75 522.4 25.9 293 3-322 56-352 (360)
8 1wy0_A Geranylgeranyl pyrophos 100.0 1.6E-70 5.5E-75 517.5 27.7 294 3-322 27-342 (342)
9 3aqb_B Component B of hexapren 100.0 5.6E-70 1.9E-74 510.3 26.9 292 3-322 26-325 (325)
10 4dhd_A Polyprenyl synthetase; 100.0 2.2E-69 7.5E-74 511.0 29.0 288 6-322 30-336 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 1.6E-69 5.6E-74 508.1 25.6 291 3-322 21-330 (330)
12 2q80_A Geranylgeranyl pyrophos 100.0 1.9E-68 6.6E-73 494.2 22.5 289 1-322 5-297 (301)
13 2e8v_A Geranylgeranyl pyrophos 100.0 2.4E-68 8.3E-73 501.6 21.6 294 4-319 23-339 (340)
14 3lk5_A Geranylgeranyl pyrophos 100.0 4.5E-67 1.5E-71 498.2 27.4 295 8-321 49-372 (380)
15 3tc1_A Octaprenyl pyrophosphat 100.0 9.2E-67 3.2E-71 484.9 28.0 277 14-318 28-307 (315)
16 1v4e_A Octoprenyl-diphosphate 100.0 8.5E-67 2.9E-71 482.5 23.9 260 11-299 30-289 (299)
17 1yhl_A Farnesyl pyrophosphate 100.0 9E-66 3.1E-70 488.6 27.5 299 7-322 34-362 (362)
18 2qis_A Farnesyl pyrophosphate 100.0 1.7E-65 5.8E-70 487.4 28.6 297 6-322 63-374 (374)
19 1uby_A FPS, farnesyl diphospha 100.0 3.8E-65 1.3E-69 483.9 28.0 296 7-322 57-367 (367)
20 1rtr_A Geranyltranstransferase 100.0 1.8E-65 6.1E-70 474.1 23.1 258 5-322 26-293 (301)
21 3uca_A Geranyltranstransferase 100.0 5.2E-65 1.8E-69 473.4 23.9 257 5-322 58-324 (324)
22 3ts7_A Geranyltranstransferase 100.0 7.2E-65 2.5E-69 472.5 23.8 256 5-322 34-302 (324)
23 2ihi_A Pyrophosphate synthase; 100.0 1.7E-64 6E-69 482.2 27.0 293 7-321 66-395 (395)
24 3p8l_A Geranyltranstransferase 100.0 7.5E-65 2.6E-69 468.8 23.5 257 5-320 34-302 (302)
25 4f62_A Geranyltranstransferase 100.0 1.7E-64 5.8E-69 468.7 25.0 255 6-322 30-295 (317)
26 3p8r_A Geranyltranstransferase 100.0 1.1E-64 3.6E-69 468.5 23.4 256 5-322 34-302 (302)
27 3lsn_A Geranyltranstransferase 100.0 1.2E-64 4.1E-69 468.2 23.2 255 6-322 29-296 (304)
28 3dyh_A Farnesyl pyrophosphate 100.0 1.9E-64 6.3E-69 482.0 23.9 307 7-322 56-390 (390)
29 3mav_A Farnesyl pyrophosphate 100.0 1.4E-63 4.7E-68 478.2 28.0 292 7-320 66-394 (395)
30 1rqj_A Geranyltranstransferase 100.0 1.1E-64 3.8E-69 468.9 19.1 258 6-322 29-299 (299)
31 2h8o_A Geranyltranstransferase 100.0 3E-64 1E-68 471.0 22.0 256 5-322 69-335 (335)
32 2her_A Fragment, farnesyl pyro 100.0 1.1E-64 3.8E-69 478.2 18.3 284 7-320 58-354 (368)
33 3lom_A Geranyltranstransferase 100.0 6E-64 2.1E-68 464.9 20.7 255 5-321 34-302 (313)
34 2ftz_A Geranyltranstransferase 100.0 1.6E-63 5.5E-68 456.6 23.0 251 5-320 30-284 (284)
35 3pde_A Farnesyl-diphosphate sy 100.0 1.4E-63 4.7E-68 461.0 22.5 258 5-322 32-300 (309)
36 3m0g_A Farnesyl diphosphate sy 100.0 4.7E-64 1.6E-68 462.9 19.3 252 6-322 27-289 (297)
37 3ipi_A Geranyltranstransferase 100.0 4.7E-63 1.6E-67 455.8 21.4 257 6-321 27-283 (295)
38 3llw_A Geranyltranstransferase 100.0 3.6E-61 1.2E-65 445.9 23.8 263 4-321 31-304 (311)
39 3npk_A Geranyltranstransferase 100.0 6.7E-61 2.3E-65 440.3 23.3 254 4-319 22-284 (291)
40 2q58_A Fragment, farnesyl pyro 100.0 7.7E-61 2.6E-65 454.7 19.6 284 8-321 59-359 (368)
41 2azj_A Geranylgeranyl pyrophos 100.0 3.3E-59 1.1E-63 429.3 20.1 244 5-321 34-280 (289)
42 2j1p_A Geranylgeranyl pyrophos 100.0 6.3E-58 2.2E-62 422.3 22.4 243 6-322 37-293 (293)
43 4fp4_A Polyprenyl synthetase; 100.0 3.7E-53 1.3E-57 386.2 15.1 200 3-231 26-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 8.1E-50 2.8E-54 364.5 19.7 186 4-210 22-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 3.3E-48 1.1E-52 353.8 21.8 182 6-211 30-223 (273)
46 4hd1_A Squalene synthase HPNC; 96.8 0.12 4.1E-06 46.7 18.5 131 136-297 106-236 (294)
47 3vj8_A Squalene synthase; farn 96.6 0.091 3.1E-06 48.7 16.7 145 128-298 112-256 (343)
48 3acx_A Dehydrosqualene synthas 96.2 0.68 2.3E-05 41.6 20.8 134 136-299 110-243 (293)
49 3kb9_A EPI-isozizaene synthase 95.1 0.45 1.5E-05 44.5 14.3 105 125-241 175-284 (382)
50 3v1v_A 2-MIB synthase, 2-methy 85.7 15 0.00052 34.7 13.9 112 118-242 246-363 (433)
51 1ps1_A Pentalenene synthase; a 81.9 28 0.00096 31.1 16.7 113 119-242 126-243 (337)
52 3aqb_A Component A of hexapren 81.6 1.9 6.4E-05 34.1 4.6 43 105-147 72-114 (147)
53 3n0f_A Isoprene synthase; terp 80.8 25 0.00084 34.4 13.4 102 128-242 365-473 (555)
54 3g4d_A (+)-delta-cadinene synt 80.1 26 0.00088 34.3 13.3 103 126-242 365-475 (554)
55 3m00_A Aristolochene synthase; 77.6 33 0.0011 33.5 13.2 102 126-241 361-469 (550)
56 2ong_A 4S-limonene synthase; m 69.6 67 0.0023 31.2 13.2 103 128-242 356-464 (543)
57 3lsn_A Geranyltranstransferase 66.0 9.7 0.00033 34.3 6.0 79 64-143 207-299 (304)
58 3rmg_A Octaprenyl-diphosphate 66.0 26 0.0009 31.8 9.0 45 184-240 63-107 (334)
59 3uca_A Geranyltranstransferase 65.9 16 0.00054 33.2 7.4 69 64-133 235-316 (324)
60 2q80_A Geranylgeranyl pyrophos 64.8 49 0.0017 29.5 10.4 45 183-239 40-84 (301)
61 3mzv_A Decaprenyl diphosphate 64.0 23 0.00079 32.3 8.2 50 178-239 63-112 (341)
62 3p8r_A Geranyltranstransferase 61.5 17 0.00057 32.7 6.6 59 65-124 214-284 (302)
63 3lom_A Geranyltranstransferase 61.0 17 0.00058 32.8 6.6 70 64-134 214-296 (313)
64 4fp4_A Polyprenyl synthetase; 58.5 39 0.0013 30.0 8.4 42 186-239 66-107 (285)
65 3nf2_A Putative polyprenyl syn 58.0 23 0.00078 32.5 7.0 50 178-239 64-113 (352)
66 4f62_A Geranyltranstransferase 57.2 20 0.0007 32.4 6.5 60 64-124 206-277 (317)
67 1n1b_A (+)-bornyl diphosphate 57.0 48 0.0016 32.3 9.5 102 128-243 362-472 (549)
68 3p5p_A Taxadiene synthase; cla 55.0 67 0.0023 32.7 10.5 102 128-242 567-675 (764)
69 3p8l_A Geranyltranstransferase 54.1 23 0.0008 31.7 6.3 59 64-123 210-280 (302)
70 3sdr_A Alpha-bisabolene syntha 53.7 50 0.0017 33.9 9.3 102 128-242 626-737 (817)
71 1rtr_A Geranyltranstransferase 52.6 21 0.0007 32.0 5.7 59 65-124 203-273 (301)
72 3ts7_A Geranyltranstransferase 52.5 31 0.001 31.3 6.9 60 65-125 214-285 (324)
73 3m0g_A Farnesyl diphosphate sy 51.8 33 0.0011 30.7 6.8 55 69-124 205-271 (297)
74 1yyq_A Trichodiene synthase; t 51.6 1.5E+02 0.005 27.3 14.7 150 71-243 91-251 (374)
75 2ftz_A Geranyltranstransferase 51.5 75 0.0026 28.0 9.2 46 182-239 60-107 (284)
76 2h8o_A Geranyltranstransferase 50.0 26 0.00087 32.0 5.9 60 64-124 246-317 (335)
77 3pko_A Geranylgeranyl pyrophos 49.7 47 0.0016 30.1 7.7 46 182-239 69-115 (334)
78 3aqb_B Component B of hexapren 47.2 42 0.0015 30.2 6.9 49 179-239 55-103 (325)
79 3pde_A Farnesyl-diphosphate sy 47.1 49 0.0017 29.7 7.3 58 65-123 210-279 (309)
80 1v4e_A Octoprenyl-diphosphate 46.4 52 0.0018 29.3 7.3 38 190-239 63-100 (299)
81 2e8v_A Geranylgeranyl pyrophos 45.0 94 0.0032 28.1 9.0 45 183-239 55-99 (340)
82 3ipi_A Geranyltranstransferase 41.8 61 0.0021 28.8 7.0 60 65-125 192-265 (295)
83 4dhd_A Polyprenyl synthetase; 40.8 59 0.002 29.8 6.9 38 190-239 67-104 (358)
84 1wy0_A Geranylgeranyl pyrophos 40.2 81 0.0028 28.5 7.7 44 184-239 62-105 (342)
85 3oyr_A Trans-isoprenyl diphosp 39.6 34 0.0012 31.2 5.1 35 178-212 75-109 (345)
86 3s9v_A Abietadiene synthase, c 38.3 90 0.0031 31.8 8.3 102 128-242 598-706 (785)
87 1wmw_A Geranylgeranyl diphosph 38.2 1E+02 0.0034 27.7 8.0 49 179-239 50-98 (330)
88 1di1_A Aristolochene synthase; 37.2 2E+02 0.0068 24.7 16.7 64 153-216 150-213 (300)
89 2azj_A Geranylgeranyl pyrophos 37.0 95 0.0033 27.4 7.5 49 180-240 61-109 (289)
90 3lmd_A Geranylgeranyl pyrophos 36.4 62 0.0021 29.7 6.3 49 179-239 85-134 (360)
91 2j5c_A 1,8-cineole synthase; t 34.9 1.3E+02 0.0045 29.3 8.7 86 128-215 383-474 (569)
92 3llw_A Geranyltranstransferase 32.4 89 0.0031 27.9 6.5 40 188-239 74-115 (311)
93 1rqj_A Geranyltranstransferase 31.6 1.7E+02 0.0058 25.8 8.3 49 179-239 55-105 (299)
94 3npk_A Geranyltranstransferase 29.5 2.1E+02 0.0072 25.2 8.4 41 187-239 59-101 (291)
95 2j1p_A Geranylgeranyl pyrophos 24.9 3.4E+02 0.012 23.7 9.0 47 181-239 65-113 (293)
96 3bny_A Aristolochene synthase; 22.1 3.8E+02 0.013 23.1 15.8 63 153-215 164-226 (320)
97 3g21_A GAG polyprotein, capsid 21.7 1.1E+02 0.0037 21.5 3.9 27 286-321 50-77 (77)
98 3kra_B Geranyl diphosphate syn 20.2 1.9E+02 0.0065 25.2 6.2 33 179-211 51-83 (274)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=2.4e-72 Score=528.09 Aligned_cols=294 Identities=32% Similarity=0.470 Sum_probs=245.1
Q ss_pred CCCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020685 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (322)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDD 81 (322)
+.+.+|.+.++++|++..| |||+||.|++++++++|++.+ .+..+|+++||||+|||||||
T Consensus 46 l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~~-----------------~~~~~A~aiEliH~asLiHDD 106 (345)
T 3oyr_A 46 MQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND-----------------HFQKLAAAVEFIHTATLLHDD 106 (345)
T ss_dssp TCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCSS-----------------THHHHHHHHHHHHHHHHHTTT
T ss_pred hccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHCc
Confidence 4677899999999999989 999999999999999987533 378899999999999999999
Q ss_pred hcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020685 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 161 (322)
Q Consensus 82 I~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 161 (322)
|||+|++|||+||+|.+||++ .|||+||||+++||+.+++..+.++++.+++++..++.||++|+.+..+..+++++|+
T Consensus 107 i~D~s~~RRG~pt~h~~~G~~-~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~ 185 (345)
T 3oyr_A 107 VVDGSQLRRGKVAAHLIWGGA-QSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYL 185 (345)
T ss_dssp TC---------CCCSCCTTHH-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHH
T ss_pred ccCCCCCCCCCccHHHhhCHH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999999999999999 9999999999999999999988999999999999999999999999887789999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHH
Q 020685 162 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241 (322)
Q Consensus 162 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 241 (322)
+|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+||+.|+||++||+|||+++++
T Consensus 186 ~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al 265 (345)
T 3oyr_A 186 EIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAI 265 (345)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHH
T ss_pred HHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhC-hH----HHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHH
Q 020685 242 EEF-PQ----LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHR 316 (322)
Q Consensus 242 ~~~-~~----~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~ 316 (322)
+.. ++ +.+++.+...+++++++++++++++|+++++++.+++|.++|.+.|+.||+++ .++.|.+|+++
T Consensus 266 ~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~la~~ 339 (345)
T 3oyr_A 266 ARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPAND------WREALEELADF 339 (345)
T ss_dssp HHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSH------HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHH
Confidence 873 33 34444444456788999999999999999999999999999999999999988 99999999999
Q ss_pred HHhcc
Q 020685 317 VITRN 321 (322)
Q Consensus 317 ~~~R~ 321 (322)
+++|+
T Consensus 340 ~~~R~ 344 (345)
T 3oyr_A 340 AVSRR 344 (345)
T ss_dssp HHHC-
T ss_pred HHhcc
Confidence 99996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=6.6e-72 Score=525.10 Aligned_cols=295 Identities=31% Similarity=0.519 Sum_probs=260.5
Q ss_pred CCCC-chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 020685 2 VVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD 80 (322)
Q Consensus 2 ~~~~-~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihD 80 (322)
+.+. +|.|.++++|++..| |||+||.|++++++++|++.+ .+..+|+++|+||+||||||
T Consensus 33 ~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~-----------------~~~~~A~aiEliH~asLiHD 93 (341)
T 3mzv_A 33 MSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGGP-----------------FHVHLAATVEFIHTATLLHD 93 (341)
T ss_dssp SCCSSCTHHHHHHHHHHHSC--CCCHHHHHHHHHHHHTTCCCS-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHc
Confidence 3455 899999999999989 999999999999999986432 37889999999999999999
Q ss_pred hhcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHH
Q 020685 81 DVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYY 160 (322)
Q Consensus 81 DI~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y 160 (322)
||||+|++|||+||+|.+||++ .|||+||||+++||+.+++..+.++++.+++++..++.||.+|+.+..+..+++++|
T Consensus 94 DI~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y 172 (341)
T 3mzv_A 94 DVVDESRQRRGRPTANLLWDNK-SSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIY 172 (341)
T ss_dssp HC------CTTSCCHHHHSCHH-HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHH
T ss_pred CccCCCCCcCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 9999999999999999999999 999999999999999999988899999999999999999999999988778999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHH
Q 020685 161 MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240 (322)
Q Consensus 161 ~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~a 240 (322)
++|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+||+.|+||++||+|||++++
T Consensus 173 ~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~a 252 (341)
T 3mzv_A 173 LRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKA 252 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHH
T ss_pred HHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCh-----HHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 020685 241 MEEFP-----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTH 315 (322)
Q Consensus 241 l~~~~-----~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~ 315 (322)
++..+ .+.+++.+...+++++++++++++++|+++++++++++|.++|.+.|+.||+++ +++.|..|++
T Consensus 253 l~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~la~ 326 (341)
T 3mzv_A 253 VALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHP------LRQMLDDLAD 326 (341)
T ss_dssp HHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHH
T ss_pred HHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHH
Confidence 99753 244556555567889999999999999999999999999999999999999988 9999999999
Q ss_pred HHHhccC
Q 020685 316 RVITRNK 322 (322)
Q Consensus 316 ~~~~R~~ 322 (322)
++++|+.
T Consensus 327 ~~~~r~~ 333 (341)
T 3mzv_A 327 YVVERVR 333 (341)
T ss_dssp HHTGGGC
T ss_pred HHHhccc
Confidence 9999974
No 3
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.9e-72 Score=523.16 Aligned_cols=294 Identities=29% Similarity=0.417 Sum_probs=255.4
Q ss_pred CCCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020685 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (322)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDD 81 (322)
+.+.+|.|.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+|||||||
T Consensus 28 ~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLiHDD 88 (334)
T 3rmg_A 28 LSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAVT-----------------PATLHAAVSLELLHTASLVHDD 88 (334)
T ss_dssp --CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCCC-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHHHHHHHHHHcC
Confidence 4567899999999999888 99999999999999998632 3478899999999999999999
Q ss_pred hcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020685 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 161 (322)
Q Consensus 82 I~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 161 (322)
|||+|++|||+||+|++||++ .|||+||||+++|++.+++..+.++++.+++++..++.||.+|+.+..+..+++++|+
T Consensus 89 I~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~t~~~y~ 167 (334)
T 3rmg_A 89 VVDESTERRGQLSVNAIFNNK-VSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYF 167 (334)
T ss_dssp HHC---------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHH
T ss_pred ccCCCCCcCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999999999999999999 9999999999999999998888999999999999999999999999887779999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHH
Q 020685 162 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241 (322)
Q Consensus 162 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 241 (322)
+|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++ +++.+||+.|+||++||+|||+++++
T Consensus 168 ~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~p~i~al 246 (334)
T 3rmg_A 168 DVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYAL 246 (334)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 58899999999999999999999999
Q ss_pred hhC-----hHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHH
Q 020685 242 EEF-----PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHR 316 (322)
Q Consensus 242 ~~~-----~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~ 316 (322)
+.. +.+.+++.+...+++++++++++++++|++++++.++++|.++|.+.|+.||+++ +++.|..|+++
T Consensus 247 ~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~ 320 (334)
T 3rmg_A 247 NTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSN------ICLALRTYLDY 320 (334)
T ss_dssp HHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHH
T ss_pred HhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHH
Confidence 873 2466777777778999999999999999999999999999999999999999888 99999999999
Q ss_pred HHhccC
Q 020685 317 VITRNK 322 (322)
Q Consensus 317 ~~~R~~ 322 (322)
+++|.+
T Consensus 321 ~~~R~~ 326 (334)
T 3rmg_A 321 VVAREK 326 (334)
T ss_dssp HHHCC-
T ss_pred HHhccc
Confidence 999974
No 4
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=1.2e-71 Score=526.44 Aligned_cols=320 Identities=81% Similarity=1.158 Sum_probs=255.4
Q ss_pred CCCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020685 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (322)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDD 81 (322)
+.+.+|.+.++++|++..|.+|||+||.|++++++++|++.+.+.+.+.++..+.+..+.++.+|+++||||+|||||||
T Consensus 29 ~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~avEliH~asLiHDD 108 (348)
T 3apz_A 29 VLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDD 108 (348)
T ss_dssp CCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678899999999998655599999999999999998643221000000001123345678999999999999999999
Q ss_pred hcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020685 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 161 (322)
Q Consensus 82 I~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 161 (322)
|||+|++|||+||+|.+||++ .|||+||||+++||+.+++..+.++++.+++++..++.||++|+.+..+..+++++|+
T Consensus 109 i~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~ 187 (348)
T 3apz_A 109 VLDDADTRRGVGSLNVVMGNK-MSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYM 187 (348)
T ss_dssp C----------------CCHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHH
T ss_pred ccCCCCCCCCCCcHHHHhCch-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 999999999999999999999 9999999999999999999888999999999999999999999998765578999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHH
Q 020685 162 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241 (322)
Q Consensus 162 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 241 (322)
+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+||++||+|||+++++
T Consensus 188 ~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al 267 (348)
T 3apz_A 188 QKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAM 267 (348)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHH
T ss_pred HHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 020685 242 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 321 (322)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 321 (322)
+..+++++++.+...++++++++++++.++|+++++++++++|.++|.+.|+.||.++.......++.|..|++++++|+
T Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~R~ 347 (348)
T 3apz_A 268 EEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRN 347 (348)
T ss_dssp HHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHHHhCc
Confidence 99888999998888788899999999999999999999999999999999999998752111126899999999999997
Q ss_pred C
Q 020685 322 K 322 (322)
Q Consensus 322 ~ 322 (322)
+
T Consensus 348 ~ 348 (348)
T 3apz_A 348 K 348 (348)
T ss_dssp C
T ss_pred C
Confidence 5
No 5
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=5.6e-71 Score=517.75 Aligned_cols=296 Identities=26% Similarity=0.445 Sum_probs=275.1
Q ss_pred CCCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020685 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (322)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDD 81 (322)
+.+.+|.|.++++|++..| |||+||.|++++++ +|++.+ .+.+..+|+++|+||+|||||||
T Consensus 36 ~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~-~g~~~~---------------~~~~~~~A~aiEliH~asLiHDD 97 (334)
T 3pko_A 36 VQLDNQPIHHKILALLKSG--GKLLRPGYFYLFST-FGNAAT---------------PAQLQAGAAAIEILHVGTLIHDD 97 (334)
T ss_dssp CCCSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHT-TCSCCC---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHH-HcCCCC---------------HHHHHHHHHHHHHHHHHHHHhCc
Confidence 4567899999999999989 99999999999999 664111 24578999999999999999999
Q ss_pred hcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHH
Q 020685 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYY 160 (322)
Q Consensus 82 I~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y 160 (322)
|||+|++|||+||+|++||++ .|||+||||+++||+.+++..+ +++++.+++++..++.||.+|+.+..+..+++++|
T Consensus 98 i~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~y 176 (334)
T 3pko_A 98 VIDDSPTRRGVRTIQMTYGQR-NAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAY 176 (334)
T ss_dssp HHHTCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHH
T ss_pred cCCCCCCcCCCccHHHHcCch-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 999999999999999999999 9999999999999999988654 88999999999999999999999887778999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHH
Q 020685 161 MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240 (322)
Q Consensus 161 ~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~a 240 (322)
++|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+||+.|+||++||+|||++++
T Consensus 177 l~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~a 256 (334)
T 3pko_A 177 LNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLS 256 (334)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCh-HHHHHHh-cccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHH
Q 020685 241 MEEFP-QLRTVVE-QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 318 (322)
Q Consensus 241 l~~~~-~~~~~l~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~ 318 (322)
++..+ ++++++. +...+++++++++++++++|++++++++++++.++|.+.|+.+|.++ .++.|..|+++++
T Consensus 257 l~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~ 330 (334)
T 3pko_A 257 LSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGS------AQQSLEQLTRLLL 330 (334)
T ss_dssp GGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSH------HHHHHHHHHHHHT
T ss_pred HHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHH
Confidence 99865 6777774 44457889999999999999999999999999999999999999988 8999999999999
Q ss_pred hccC
Q 020685 319 TRNK 322 (322)
Q Consensus 319 ~R~~ 322 (322)
+|++
T Consensus 331 ~R~~ 334 (334)
T 3pko_A 331 RRDH 334 (334)
T ss_dssp TCC-
T ss_pred hccC
Confidence 9975
No 6
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=3e-71 Score=522.35 Aligned_cols=295 Identities=25% Similarity=0.351 Sum_probs=271.5
Q ss_pred CCCCchhHHHHHHHHH-----------hCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHH
Q 020685 2 VVAEVPKLASAAEYFF-----------KMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 70 (322)
Q Consensus 2 ~~~~~~~l~~~~~y~~-----------~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avE 70 (322)
+.+.+|.+.+++.|++ ..| |||+||.|++++++++|++. +.++.+|+++|
T Consensus 24 v~~~~~~l~~~~~y~~~~~~~~~~~~~~~g--GKrlRp~l~ll~~~~~g~~~-----------------~~~~~~A~avE 84 (352)
T 3nf2_A 24 VDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSAEVTGAAP-----------------EVGVPGAVAVE 84 (352)
T ss_dssp HHTSCTTHHHHHHHHTTSBCTTSCBCCCCC--CCCHHHHHHHHHHHTTTCCG-----------------GGGHHHHHHHH
T ss_pred HcccChHHHHHHHHHhcccccccccCcCCC--cccHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHH
Confidence 4567899999999999 567 99999999999999998632 23788999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHhhhHhhh
Q 020685 71 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT---EVVTLLATVVEHLVTGETMQM 147 (322)
Q Consensus 71 llh~asLihDDI~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~Gq~~d~ 147 (322)
|||+||||||||||+|++|||+||+|++||++ .|||+||||+++||+.+++.+++ ++++.+++++..++.||++|+
T Consensus 85 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl 163 (352)
T 3nf2_A 85 LVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPA-QAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDI 163 (352)
T ss_dssp HHHHHHHHHHHHHHTCCEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999998776 789999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhh
Q 020685 148 TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 227 (322)
Q Consensus 148 ~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~D 227 (322)
.+..+..+++++|++|+++|||+||++||++|++++|++++..+.++.||+++|+||||+||++|++++++.+||+.|+|
T Consensus 164 ~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~D 243 (352)
T 3nf2_A 164 SYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSD 243 (352)
T ss_dssp HHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHH
T ss_pred HcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCcc
Confidence 99887789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHhhC-h---HHHHHHhcc-------cCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 020685 228 IRHGIITAPILFAMEEF-P---QLRTVVEQG-------FEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 296 (322)
Q Consensus 228 l~egk~Tlp~l~al~~~-~---~~~~~l~~~-------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp 296 (322)
|++||+|||++++++.. + ++.+++.+. ..+++++++++++++++|+++++++++++|.++|.+.|+.+|
T Consensus 244 l~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp 323 (352)
T 3nf2_A 244 LRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVD 323 (352)
T ss_dssp HHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999974 3 456666553 346788999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhcc
Q 020685 297 ENNDEDVTKSRRALLDLTHRVITRN 321 (322)
Q Consensus 297 ~~~~~~~~~~~~~L~~l~~~~~~R~ 321 (322)
.++ .+|+.|..|++++++|.
T Consensus 324 ~~~-----~~r~~L~~la~~~~~R~ 343 (352)
T 3nf2_A 324 MPD-----RVRDRFTALADFVVVRK 343 (352)
T ss_dssp CCH-----HHHHHHHHHHHHHCC--
T ss_pred CCc-----HHHHHHHHHHHHHHhcc
Confidence 843 28999999999999996
No 7
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=3.1e-71 Score=522.43 Aligned_cols=293 Identities=30% Similarity=0.450 Sum_probs=255.0
Q ss_pred CCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020685 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (322)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI 82 (322)
.+.+|.|.++++|++..| |||+||.|++++++++|...+ +.++.+|+++||||+||||||||
T Consensus 56 ~~~~~~l~~~~~y~~~~g--GKrlRp~L~ll~~~~~~~~~~----------------~~~~~~A~avEliH~asLIHDDI 117 (360)
T 3lmd_A 56 SSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPLS----------------ENVIKAAVVVEITHLATLYHDDV 117 (360)
T ss_dssp TCSCHHHHHHHHHHCCCC--SCCHHHHHHHHHHTTSSSTTC----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHHHHHHHHHHhCCC
Confidence 457899999999999988 999999999999999872211 34788999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 162 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 162 (322)
||+|++|||+||+|.+||++ .|||+||||+++||+.+++++ +++++.+++++..++.||++|+.+..+. +++++|++
T Consensus 118 mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~GQ~ldl~~~~~~-~t~~~y~~ 194 (360)
T 3lmd_A 118 MDEASMRRGVPSANARWDNS-VAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQMRETVGPRDT-DPIEHYTN 194 (360)
T ss_dssp HC-----------CHHHHHH-HHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCTTS-CHHHHHHH
T ss_pred cCCCCCCCCCCcHHhhcChH-HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHhccCCC-CCHHHHHH
Confidence 99999999999999999999 999999999999999998875 5899999999999999999999998776 89999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHh
Q 020685 163 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 242 (322)
Q Consensus 163 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 242 (322)
|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+||+.|+||++||+|||++++++
T Consensus 195 ~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~ 274 (360)
T 3lmd_A 195 VIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALR 274 (360)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hC----hHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHH
Q 020685 243 EF----PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 318 (322)
Q Consensus 243 ~~----~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~ 318 (322)
.. +++.+++.+...+++++++++++++++|++++++.++++|.++|.+.|+.||+++ .++.|..|+++++
T Consensus 275 ~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~La~~~~ 348 (360)
T 3lmd_A 275 EDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDST------VKEALRNLATFTV 348 (360)
T ss_dssp CCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHH
Confidence 74 3566777776678899999999999999999999999999999999999999988 9999999999999
Q ss_pred hccC
Q 020685 319 TRNK 322 (322)
Q Consensus 319 ~R~~ 322 (322)
+|+.
T Consensus 349 ~R~~ 352 (360)
T 3lmd_A 349 KRVG 352 (360)
T ss_dssp HTTS
T ss_pred Hhcc
Confidence 9963
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-70 Score=517.52 Aligned_cols=294 Identities=30% Similarity=0.384 Sum_probs=269.7
Q ss_pred CCC-chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020685 3 VAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (322)
Q Consensus 3 ~~~-~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDD 81 (322)
.+. +|.|.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+|||||||
T Consensus 27 ~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDD 87 (342)
T 1wy0_A 27 PEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDP-----------------LRAIYPAVAIELIHNYSLVHDD 87 (342)
T ss_dssp CSCSSHHHHHHHHHTGGGT--CCCHHHHHHHHHTTTTTSCG-----------------GGGHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHHCC
Confidence 344 789999999999988 99999999999999997532 1367899999999999999999
Q ss_pred hcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCC
Q 020685 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQRCS 156 (322)
Q Consensus 82 I~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~ 156 (322)
|||+|++|||+||+|.+||++ .|||+||||+++||+.+++. ...++++.+++++..++.||.+|+.+..+..++
T Consensus 88 i~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~ 166 (342)
T 1wy0_A 88 IMDMDETRRGKPTVHRIWGVN-MAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVT 166 (342)
T ss_dssp HHHTCCCSTTSCCHHHHHCHH-HHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred cccCCCCCCCCCccccccChh-HHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Confidence 999999999999999999999 99999999999999999987 346799999999999999999999998877789
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHH
Q 020685 157 MDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 236 (322)
Q Consensus 157 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp 236 (322)
+++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+||++||+|||
T Consensus 167 ~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp 246 (342)
T 1wy0_A 167 IEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLI 246 (342)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhC-hHHHHHHhcccC---------------ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 020685 237 ILFAMEEF-PQLRTVVEQGFE---------------DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 300 (322)
Q Consensus 237 ~l~al~~~-~~~~~~l~~~~~---------------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~ 300 (322)
++++++.. +..++.+.+.+. ++++++++++++.++|+++++++.+++|.++|.+.|+.+|.++
T Consensus 247 ~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~- 325 (342)
T 1wy0_A 247 VAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSK- 325 (342)
T ss_dssp HHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCH-
T ss_pred HHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH-
Confidence 99999874 344444544332 2568899999999999999999999999999999999999877
Q ss_pred cchHHHHHHHHHHHHHHHhccC
Q 020685 301 EDVTKSRRALLDLTHRVITRNK 322 (322)
Q Consensus 301 ~~~~~~~~~L~~l~~~~~~R~~ 322 (322)
.++.|..+++++++|++
T Consensus 326 -----~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 326 -----ARMDLELLAKFIVEREY 342 (342)
T ss_dssp -----HHHHHHHHHHHTTTCC-
T ss_pred -----HHHHHHHHHHHHHhccC
Confidence 89999999999999974
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=5.6e-70 Score=510.28 Aligned_cols=292 Identities=28% Similarity=0.433 Sum_probs=271.0
Q ss_pred CCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020685 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (322)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI 82 (322)
.+.+|.+.++++|++..| ||++||.+++++++++|++. +.+..+|+++|++|+||||||||
T Consensus 26 ~~~~~~l~~~~~~~~~~g--GKr~Rp~l~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDi 86 (325)
T 3aqb_B 26 QSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDTQK-----------------DDLIRTAVSLELVHMASLVHDDY 86 (325)
T ss_dssp CCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHTTSSCCC-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHHHHHHHHHhCcc
Confidence 456789999999999988 99999999999999997531 24788999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 162 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 162 (322)
||+|++|||+||+|.+||++ .|||+||||+++|++.+++....++++.+++++..++.||.+|+.+..+..+++++|++
T Consensus 87 ~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~ 165 (325)
T 3aqb_B 87 IDNSDMRRGNTSVHIAFDKD-TAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLR 165 (325)
T ss_dssp HHTCCEETTEECHHHHTCHH-HHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHH
T ss_pred ccCCCCCCCCCCcccccChH-HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHH
Confidence 99999999999999999999 99999999999999999998889999999999999999999999998777789999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHh
Q 020685 163 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 242 (322)
Q Consensus 163 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 242 (322)
|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+||++||+|||++++++
T Consensus 166 ~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~ 245 (325)
T 3aqb_B 166 RINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIA 245 (325)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCh-----HHH---HHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 020685 243 EFP-----QLR---TVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 314 (322)
Q Consensus 243 ~~~-----~~~---~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~ 314 (322)
..+ .+. +++.+.. .+++++++++++.++ ++++++..+++|.++|.+.|+.+|.++ .++.|..++
T Consensus 246 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~ 317 (325)
T 3aqb_B 246 NLKEQDDDKLEAVVKHLTSTS-DDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQLQDSN------IKDYLEEIH 317 (325)
T ss_dssp HHHHTTCCHHHHHHHTCCTTC-CHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTSCCCH------HHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHH
Confidence 743 244 4443332 267899999999999 999999999999999999999999988 899999999
Q ss_pred HHHHhccC
Q 020685 315 HRVITRNK 322 (322)
Q Consensus 315 ~~~~~R~~ 322 (322)
+++++|++
T Consensus 318 ~~~~~R~~ 325 (325)
T 3aqb_B 318 EKMLKRVY 325 (325)
T ss_dssp HHHTTTTC
T ss_pred HHHHhCcC
Confidence 99999975
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=2.2e-69 Score=511.04 Aligned_cols=288 Identities=26% Similarity=0.382 Sum_probs=260.4
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~ 85 (322)
+|.|.++++|++..| |||+||.|++++++++|++. +.++.+|+++||||+||||||||||+
T Consensus 30 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLiHDDI~D~ 90 (358)
T 4dhd_A 30 AEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQW-----------------RPALPAAAIVELIHNYSLIYDDIIDR 90 (358)
T ss_dssp CHHHHHHHHGGGSSC--CCCHHHHHHHHHHHHHHSCC-----------------GGGHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCccccC
Confidence 789999999999988 99999999999999998642 23788999999999999999999999
Q ss_pred CCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhhhHhhhccc-----------CCC
Q 020685 86 ADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGETMQMTTS-----------SDQ 153 (322)
Q Consensus 86 ~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~~d~~~~-----------~~~ 153 (322)
|++|||+||+|++||++ .|||+||||+++||+.+..... .++++.+++++..++.||.+|+.+. .+.
T Consensus 91 s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~ 169 (358)
T 4dhd_A 91 GDVRRGLPTVRKAFGDN-AAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARW 169 (358)
T ss_dssp CCEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCC
T ss_pred CCCcCCCccHHHhcCHH-HHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccCC
Confidence 99999999999999999 9999999999999999976554 6899999999999999999999987 444
Q ss_pred -CCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCC
Q 020685 154 -RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 232 (322)
Q Consensus 154 -~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk 232 (322)
.+++++|++|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+||+.|+||++||
T Consensus 170 ~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK 249 (358)
T 4dhd_A 170 REVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHK 249 (358)
T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTB
T ss_pred CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CHHHHHHHhhC-h----HHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH
Q 020685 233 I-TAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 306 (322)
Q Consensus 233 ~-Tlp~l~al~~~-~----~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~ 306 (322)
+ |||++++++.. + .+.+++.+...+++++++++++++++|++++|++++++|.++|.+.|+.||+++
T Consensus 250 ~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~~------- 322 (358)
T 4dhd_A 250 RGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNNG------- 322 (358)
T ss_dssp SCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSCH-------
T ss_pred hhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH-------
Confidence 9 99999999974 3 466777777778899999999999999999999999999999999999999433
Q ss_pred HHHHHHHHHHHHhccC
Q 020685 307 RRALLDLTHRVITRNK 322 (322)
Q Consensus 307 ~~~L~~l~~~~~~R~~ 322 (322)
.|.+|++++++|++
T Consensus 323 --~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 323 --TLKELLDFIVAREY 336 (358)
T ss_dssp --HHHHHHHHHTTTTT
T ss_pred --HHHHHHHHHHhccc
Confidence 89999999999974
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-69 Score=508.12 Aligned_cols=291 Identities=25% Similarity=0.265 Sum_probs=263.9
Q ss_pred CCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020685 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (322)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI 82 (322)
.+.+|.+.++++|++..| ||++||.|++++++++|++ .+.++.+|+++|+||+||||||||
T Consensus 21 ~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~~~~-----------------~~~~~~~A~avEliH~asLihDDi 81 (330)
T 1wmw_A 21 DHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHGAP-----------------LEAGLEAATALELFQNWVLVHDDI 81 (330)
T ss_dssp CCSSHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCC-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHHHHHHHHccc
Confidence 456789999999999989 9999999999999999752 134789999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhhhHhhhcc-cCC-CCC
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTGETMQMTT-SSD-QRC 155 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~-----~~~~~~~~~~~~~~~~Gq~~d~~~-~~~-~~~ 155 (322)
||+|++|||+||+|++||++ .|||+||||+++|++.+++..+ .++++.+++++..++.||++|+.+ ..+ ..+
T Consensus 82 ~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~ 160 (330)
T 1wmw_A 82 EDGSEERRGRPALHRLHPMP-LALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDL 160 (330)
T ss_dssp HHTCCEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred ccCCCCCCCCCccccccCch-HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 99999999999999999999 9999999999999999987532 689999999999999999999998 776 678
Q ss_pred CHHHHHHHHhhhhhHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCC
Q 020685 156 SMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234 (322)
Q Consensus 156 ~~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 234 (322)
++++|++|+++|||+| |++||++|++++|++++.. ++.||.++|+||||+||++|++++++ +||+.|+||++||+|
T Consensus 161 ~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T 237 (330)
T 1wmw_A 161 RPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRT 237 (330)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCC
T ss_pred CHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCC
Confidence 9999999999999999 9999999999999988766 99999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhCh-H----HHHHHhcccCC--hhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc----cCCCCCCcch
Q 020685 235 APILFAMEEFP-Q----LRTVVEQGFED--SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID----SLPENNDEDV 303 (322)
Q Consensus 235 lp~l~al~~~~-~----~~~~l~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~----~lp~~~~~~~ 303 (322)
||++++++..+ . +.+++.+...+ +++++++++++.++|+++++++++++|.++|.+.|+ .+|.++
T Consensus 238 ~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~---- 313 (330)
T 1wmw_A 238 LILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKE---- 313 (330)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHH----
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcH----
Confidence 99999998753 3 33444433223 678999999999999999999999999999999999 999877
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 020685 304 TKSRRALLDLTHRVITRNK 322 (322)
Q Consensus 304 ~~~~~~L~~l~~~~~~R~~ 322 (322)
.++.|..|++++++|++
T Consensus 314 --~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 314 --ALDHLRGLLAALVERRA 330 (330)
T ss_dssp --HHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHHHHhccC
Confidence 89999999999999975
No 12
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.9e-68 Score=494.18 Aligned_cols=289 Identities=21% Similarity=0.263 Sum_probs=254.5
Q ss_pred CCCCCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 020685 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD 80 (322)
Q Consensus 1 ~~~~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihD 80 (322)
++.+.+|.|.++++|++..| |||+||.|++++++++|.+. +.+..+|+++|+||+||||||
T Consensus 5 ~~~~~~~~l~~~~~y~~~~g--GKr~Rp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asLiHD 65 (301)
T 2q80_A 5 TQETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASLLID 65 (301)
T ss_dssp --CCHHHHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHc
Confidence 35677899999999999988 99999999999999997521 347889999999999999999
Q ss_pred hhcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCC-CCCHHH
Q 020685 81 DVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDY 159 (322)
Q Consensus 81 DI~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~ 159 (322)
||||+|++|||+||+|.+||++ .|||+||||+++|++.+++.+++++++.+++++..++.||.+|+.+..+. .+++++
T Consensus 66 Di~D~s~~RRG~pt~h~~~G~~-~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~ 144 (301)
T 2q80_A 66 DIEDNSKLRRGFPVAHSIYGIP-SVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEE 144 (301)
T ss_dssp HHHHTCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred cccCCCCCCCCCcchhhccCcH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Confidence 9999999999999999999999 99999999999999999998777889999999999999999999886543 679999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 160 YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 160 y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
|++|+++|||+||++||++|+++++.++ .++.||.++|+||||+||++|++++++.+||+.|+||++||+|||+++
T Consensus 145 y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~ 220 (301)
T 2q80_A 145 YKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIH 220 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHH
Confidence 9999999999999999999999999874 489999999999999999999999999999999999999999999999
Q ss_pred HHhhCh---HHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHH
Q 020685 240 AMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHR 316 (322)
Q Consensus 240 al~~~~---~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~ 316 (322)
+++..+ .+.+++.+...+.+..++++++++++|+++++++++++|.++|.+.|+.+|.++ .|+.++++
T Consensus 221 al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~---------~L~~l~~~ 291 (301)
T 2q80_A 221 AIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP---------ELVALVKH 291 (301)
T ss_dssp HHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH---------HHHHHHHH
T ss_pred HHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---------HHHHHHHH
Confidence 998754 466667655544444555999999999999999999999999999999999776 39999999
Q ss_pred HHhccC
Q 020685 317 VITRNK 322 (322)
Q Consensus 317 ~~~R~~ 322 (322)
+..|.+
T Consensus 292 l~~~~~ 297 (301)
T 2q80_A 292 LSKMFK 297 (301)
T ss_dssp HHTTCC
T ss_pred HHHHhc
Confidence 988764
No 13
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=2.4e-68 Score=501.57 Aligned_cols=294 Identities=19% Similarity=0.290 Sum_probs=233.7
Q ss_pred CCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020685 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVL 83 (322)
Q Consensus 4 ~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~ 83 (322)
+.++.|.++++|++..| |||+||.|++++++++|.+. +.+..+|+++|+||+|||||||||
T Consensus 23 ~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asLiHDDI~ 83 (340)
T 2e8v_A 23 QNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLPK-----------------DQLAIVSQIVELLHNSSLLIDDIE 83 (340)
T ss_dssp HHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCccc
Confidence 45688999999999989 99999999999999997521 347889999999999999999999
Q ss_pred CCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHhhhHhhhcccCCC---CC
Q 020685 84 DDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTE-----VVTLLATVVEHLVTGETMQMTTSSDQ---RC 155 (322)
Q Consensus 84 D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~-----~~~~~~~~~~~~~~Gq~~d~~~~~~~---~~ 155 (322)
|+|++|||+||+|.+||++ .|||+||||+++|++.+++...+. +++.+++++..++.||++|+.+..+. .+
T Consensus 84 D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~ 162 (340)
T 2e8v_A 84 DNAPLRRGQTTSHLIFGVP-STINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIP 162 (340)
T ss_dssp TTCSEETTEECHHHHTCHH-HHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCC
T ss_pred cCCCCCCCCcchhhccCch-HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 9999999999999999999 999999999999999999887655 89999999999999999999887653 57
Q ss_pred CHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCH
Q 020685 156 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 235 (322)
Q Consensus 156 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tl 235 (322)
++++|++|+++|||+||++||++|++++|+++ ..+.++.||.++|+||||+||++|++++++.+||++|+||++||+||
T Consensus 163 t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tl 241 (340)
T 2e8v_A 163 TQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSF 241 (340)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCH
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchH
Confidence 99999999999999999999999999999987 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhChH---------HHHHHhcccCChhhHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH-----hccCCCCCC
Q 020685 236 PILFAMEEFPQ---------LRTVVEQGFEDSSNVDIALEYLG-KSRGIQKTRELAVKHANLAAAA-----IDSLPENND 300 (322)
Q Consensus 236 p~l~al~~~~~---------~~~~l~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~a~~~-----l~~lp~~~~ 300 (322)
|++++++..+. +.+++.+...+++..+++++++. ++|+++++++++++|.++|.+. |+.+|.+++
T Consensus 242 p~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~ 321 (340)
T 2e8v_A 242 PIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSD 321 (340)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCcc
Confidence 99999987432 55666655444455568999999 9999999999999999999999 999998761
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 020685 301 EDVTKSRRALLDLTHRVIT 319 (322)
Q Consensus 301 ~~~~~~~~~L~~l~~~~~~ 319 (322)
. ...+|+.|..+++++.+
T Consensus 322 ~-~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 322 T-ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp -------------------
T ss_pred c-cHHHHHHHHHHHHHHHh
Confidence 1 01167899999999865
No 14
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=4.5e-67 Score=498.16 Aligned_cols=295 Identities=23% Similarity=0.311 Sum_probs=247.7
Q ss_pred hHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 020685 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 87 (322)
Q Consensus 8 ~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~~ 87 (322)
.+.+++.|++..| |||+||.|++++++++|+..+. ....+.++.+|+++||||+||||||||||+|+
T Consensus 49 ~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~~-----------~~~~~~~~~~AaaiEliH~asLIHDDImD~s~ 115 (380)
T 3lk5_A 49 DAVAHLRSFVLNG--GKRIRPLYAWAGFLAAQGHKNS-----------SEKLESVLDAAASLEFIQACALIHDDIIDSSD 115 (380)
T ss_dssp HHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHTTSCC-----------SSCHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhCC--CcchhHHHHHHHHHHcCCCccc-----------cCCHHHHHHHHHHHHHHHHHHHHHCCCcCCCC
Confidence 3677788888889 9999999999999999864211 01134688999999999999999999999999
Q ss_pred CCCCcchhhhh----------------cCCchhHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhhhHhh
Q 020685 88 TRRGIGSLNFV----------------MGNKVLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTGETMQ 146 (322)
Q Consensus 88 ~RRG~pt~~~~----------------~G~~~~Ail~gd~L~~~a~~~l~~~~~-----~~~~~~~~~~~~~~~~Gq~~d 146 (322)
+|||+||+|++ ||++ .|||+||||+++|++++++... ..+++.++.+...++.||++|
T Consensus 116 ~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~-~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lD 194 (380)
T 3lk5_A 116 TRRGAPTVHRAVEADHRANNFEGDPEHFGVS-VSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIGGQLLD 194 (380)
T ss_dssp ---------------------------CHHH-HHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhHHHHHhhhhcccccchhhcCHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 5999 9999999999999999998642 356778888888999999999
Q ss_pred hcccCCCCCCHHHHHHHHhhhhhHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchh
Q 020685 147 MTTSSDQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSL 225 (322)
Q Consensus 147 ~~~~~~~~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~ 225 (322)
+.+..+...++++|++|+++|||+| |++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+|||.|
T Consensus 195 l~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g 274 (380)
T 3lk5_A 195 IYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAG 274 (380)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTT
T ss_pred HHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCch
Confidence 9998777789999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHhhC----hHHHHHHhc---ccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 020685 226 SDIRHGIITAPILFAMEEF----PQLRTVVEQ---GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 298 (322)
Q Consensus 226 ~Dl~egk~Tlp~l~al~~~----~~~~~~l~~---~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~ 298 (322)
+||++||+|||++++++.. |+.++.+.+ ...+++++++++++++++|+++++++++++|.++|.+.|+.+|.+
T Consensus 275 ~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~ 354 (380)
T 3lk5_A 275 DDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIP 354 (380)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCC
T ss_pred hhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999863 333333322 234678899999999999999999999999999999999999965
Q ss_pred CCcchHHHHHHHHHHHHHHHhcc
Q 020685 299 NDEDVTKSRRALLDLTHRVITRN 321 (322)
Q Consensus 299 ~~~~~~~~~~~L~~l~~~~~~R~ 321 (322)
+ .+|+.|..|++++..|+
T Consensus 355 ~-----~~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 355 D-----EVRAQLRALAIRSTERR 372 (380)
T ss_dssp H-----HHHHHHHHHHHHHHC--
T ss_pred h-----HHHHHHHHHHHHHHHhh
Confidence 4 28999999999999885
No 15
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=9.2e-67 Score=484.90 Aligned_cols=277 Identities=28% Similarity=0.354 Sum_probs=233.9
Q ss_pred HHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 020685 14 EYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIG 93 (322)
Q Consensus 14 ~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~~~RRG~p 93 (322)
.|.+..| |||+||.|++++++..+ . .-..+++..+|+++|+||+||||||||||+|++|||+|
T Consensus 28 ~y~~~~g--GKrlRp~l~l~~~~~~~----~-----------~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~p 90 (315)
T 3tc1_A 28 LFSKIGP--SKMLRSKLMLALLNEKT----D-----------AILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLP 90 (315)
T ss_dssp HHTTCCC--CCCHHHHHHHTTCCTTC----C-----------HHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHhcCC--cccHHHHHHHHHhccCc----c-----------ccchhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcCCCc
Confidence 5777778 99999999999887221 1 01135678999999999999999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHH
Q 020685 94 SLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLIS 173 (322)
Q Consensus 94 t~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~ 173 (322)
|+|++||++ .|||+||||+++||+.+++.+ +++++.+++++..++.||.+|+.+..+..+++++|++|+++|||+||+
T Consensus 91 t~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~ 168 (315)
T 3tc1_A 91 SINALFGNF-NAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIE 168 (315)
T ss_dssp ------CCS-HHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHH
T ss_pred cHHHHhCch-HHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHH
Confidence 999999999 999999999999999999887 899999999999999999999999877789999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhh-ChHHHHHHh
Q 020685 174 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVE 252 (322)
Q Consensus 174 ~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~-~~~~~~~l~ 252 (322)
+||++|++++|++ .+.++.||.++|+||||+||++|++++++.+||+.|+||++||+|||++++++. ++..++.+.
T Consensus 169 ~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~ 245 (315)
T 3tc1_A 169 ASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLI 245 (315)
T ss_dssp HHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHH
Confidence 9999999999998 578999999999999999999999999999999999999999999999999998 444444443
Q ss_pred cccC--ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHH
Q 020685 253 QGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 318 (322)
Q Consensus 253 ~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~ 318 (322)
+... ++++++++++++.++|++++++.++++|.++|.+.|+.||+++ +|+.|..|++++.
T Consensus 246 ~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~------~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 246 SYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLI------LEKLAQDVISRTF 307 (315)
T ss_dssp HTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHH------HHHHHHHHHCC--
T ss_pred HHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHH
Confidence 3222 6789999999999999999999999999999999999999998 9999999998765
No 16
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=8.5e-67 Score=482.47 Aligned_cols=260 Identities=25% Similarity=0.391 Sum_probs=243.5
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 020685 11 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR 90 (322)
Q Consensus 11 ~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~~~RR 90 (322)
++++|++..| |||+||.|++++++++|++.+ +.+..+|+++|++|+||||||||||+|++||
T Consensus 30 ~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~----------------~~~~~~A~avEliH~asLiHDDi~D~s~~RR 91 (299)
T 1v4e_A 30 EQIMKDLPLY--GKMLRVRLSILSFKNRGVEIG----------------EDAISSLAALELVHLASLLHDDVIDGARFRR 91 (299)
T ss_dssp HHHHTTSCCC--CCCHHHHHHHHHHHHHTCCCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHTCSEET
T ss_pred HHHHHHHhCC--CCcHHHHHHHHHHHHcCCCCh----------------hHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Confidence 8899999988 999999999999999985211 2478899999999999999999999999999
Q ss_pred CcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhH
Q 020685 91 GIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTAS 170 (322)
Q Consensus 91 G~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~ 170 (322)
|+||+|.+||++ .|||+||||+++||+.+++..+.++++.+++++..++.||.+|+.+..+. +++++|++|+++|||+
T Consensus 92 G~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~y~~~i~~KTa~ 169 (299)
T 1v4e_A 92 GKETINFMYGDK-AAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGA 169 (299)
T ss_dssp TEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHTHH
T ss_pred CCCchhhhcCHH-HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCCC-CCHHHHHHHHHhccHH
Confidence 999999999999 99999999999999999988888999999999999999999999998776 8999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhhChHHHHH
Q 020685 171 LISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 250 (322)
Q Consensus 171 l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~ 250 (322)
||++||++|++++|+++ +.++.||.++|+||||+||++|++++ +.+||+.|+||++||+|||++++++..+.++++
T Consensus 170 L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~~~~~l~~~ 245 (299)
T 1v4e_A 170 LFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245 (299)
T ss_dssp HHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHHhChHHHHH
Confidence 99999999999999877 78999999999999999999999999 999999999999999999999999987667777
Q ss_pred HhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 020685 251 VEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 299 (322)
Q Consensus 251 l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~ 299 (322)
+.+ ++++++++++.++|+++++++.++.|.++|.+.|+.||...
T Consensus 246 l~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 246 FEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp HHT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred HhH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 754 57889999999999999999999999999999999999877
No 17
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=9e-66 Score=488.57 Aligned_cols=299 Identities=16% Similarity=0.146 Sum_probs=261.9
Q ss_pred hhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020685 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (322)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~ 86 (322)
+.+.++++|.+ .| |||+||.|++++++++|+..+.. ....+...+.+..+|+++||||+||||||||||+|
T Consensus 34 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~~------~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s 104 (362)
T 1yhl_A 34 RYLRIMMDTTC-LG--GKYFRGMTVVNVAEGFLAVTQHD------EATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104 (362)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhc-CC--cccHHHHHHHHHHHHhCCCcCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 56888889988 48 99999999999999997532100 00001123334458899999999999999999999
Q ss_pred CCCCCcchhhhhcCC--chhHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhhhHhhhccc---------
Q 020685 87 DTRRGIGSLNFVMGN--KVLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTS--------- 150 (322)
Q Consensus 87 ~~RRG~pt~~~~~G~--~~~Ail~gd~L~~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~--------- 150 (322)
++|||+||+|++||+ + .|||+||+|++.+++.+++. ...++++.+++++..++.||++|+.+.
T Consensus 105 ~~RRG~pt~h~~~g~~~~-~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~ 183 (362)
T 1yhl_A 105 VMRRGKPCWYRFPGVTTQ-CAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPE 183 (362)
T ss_dssp CEETTEECGGGSTTTHHH-HHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTT
T ss_pred CCCCCCccHHhccCccHh-HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 999999999999999 6 89999999999999999875 346899999999999999999999887
Q ss_pred --C--CC---CCCHHHHHHHHhhhhhHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccC
Q 020685 151 --S--DQ---RCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 221 (322)
Q Consensus 151 --~--~~---~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~G 221 (322)
. +. .+++++|++|+++|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|
T Consensus 184 ~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~G 263 (362)
T 1yhl_A 184 VAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLG 263 (362)
T ss_dssp SCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred cccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhC
Confidence 3 22 479999999999999999 9999999999999 8888889999999999999999999999999999999
Q ss_pred CchhhhhhcCCCCHHHHHHHhhC-hHHHHHHhcccC--ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 020685 222 KGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 298 (322)
Q Consensus 222 K~~~~Dl~egk~Tlp~l~al~~~-~~~~~~l~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~ 298 (322)
| .|+||++||+|||++++++.. +..++.+.+.+. ++++++++++++.++|+++++++++++|.++|.+.|+.+|.+
T Consensus 264 K-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 342 (362)
T 1yhl_A 264 K-VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVK 342 (362)
T ss_dssp S-CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred C-ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9 899999999999999999984 445555544332 467899999999999999999999999999999999999999
Q ss_pred CCcchHHHH--HHHHHHHHHHHhccC
Q 020685 299 NDEDVTKSR--RALLDLTHRVITRNK 322 (322)
Q Consensus 299 ~~~~~~~~~--~~L~~l~~~~~~R~~ 322 (322)
+ .+ +.|..|++++++|+|
T Consensus 343 ~------~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 343 S------PTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp C------HHHHHHHHHHHHHHHTCCC
T ss_pred c------hhHHHHHHHHHHHHHhccC
Confidence 8 78 999999999999986
No 18
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=1.7e-65 Score=487.40 Aligned_cols=297 Identities=18% Similarity=0.199 Sum_probs=262.0
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~ 85 (322)
++.|.++++|.+ .| |||+||.+++++++++|++.+. +++..+.+..+|+++||||+||||||||||+
T Consensus 63 ~~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~a~~~A~avEliH~asLIHDDImD~ 129 (374)
T 2qis_A 63 IARLKEVLEYNA-IG--GKYNRGLTVVVAFRELVEPRKQ----------DADSLQRAWTVGWCVELLQAFFLVADDIMDS 129 (374)
T ss_dssp HHHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHSCGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc-CC--CcchHHHHHHHHHHHhCCCCcc----------chHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 467889999988 58 9999999999999999863110 0122345788999999999999999999999
Q ss_pred CCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhhhHhhhcccCCC-----CC
Q 020685 86 ADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RC 155 (322)
Q Consensus 86 ~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-----~~ 155 (322)
|++|||+||+|++||++.+||++||++++.+|..+++. ...++++.+++++..++.||.+|+.+..+. .+
T Consensus 130 s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~ 209 (374)
T 2qis_A 130 SLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRF 209 (374)
T ss_dssp CCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGC
T ss_pred CCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccC
Confidence 99999999999999998689999999999999988763 236899999999999999999999887541 37
Q ss_pred CHHHHHHHHhhhhhHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCC
Q 020685 156 SMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 233 (322)
Q Consensus 156 ~~~~y~~~~~~KTa~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 233 (322)
++++|++|+++|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| .|+||++||+
T Consensus 210 t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~ 288 (374)
T 2qis_A 210 TEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKC 288 (374)
T ss_dssp CHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCC
T ss_pred CHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCc
Confidence 9999999999999999 9999999999999 99999999999999999999999999999999999999 9999999999
Q ss_pred CHHHHHHHhhC-hHHHHHHhcccC--ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH
Q 020685 234 TAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL 310 (322)
Q Consensus 234 Tlp~l~al~~~-~~~~~~l~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L 310 (322)
|||++++++.. +..++.+.+... ++++++++++++.++|+.++++..+++|.++|.+.|+.||.++ .++.|
T Consensus 289 T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~------~k~~L 362 (374)
T 2qis_A 289 SWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL------PPAVF 362 (374)
T ss_dssp CHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS------CHHHH
T ss_pred cHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHH
Confidence 99999999984 455666655443 3678999999999999999999999999999999999999988 88999
Q ss_pred HHHHHHHHhccC
Q 020685 311 LDLTHRVITRNK 322 (322)
Q Consensus 311 ~~l~~~~~~R~~ 322 (322)
..|++++++|+|
T Consensus 363 ~~l~~~i~~R~k 374 (374)
T 2qis_A 363 LGLARKIYKRRK 374 (374)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHcCcC
Confidence 999999999986
No 19
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=3.8e-65 Score=483.89 Aligned_cols=296 Identities=20% Similarity=0.198 Sum_probs=263.4
Q ss_pred hhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020685 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (322)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~ 86 (322)
+.+.++++|.+ .| |||+||.+++++++++|++.+. +.+..+.+..+|+++||||+||||||||||+|
T Consensus 57 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s 123 (367)
T 1uby_A 57 ARLKEVLQYNA-PG--GKCNRGLTVVAAYRELSGPGQK----------DAESLRCALAVGWCIELFQAASLVADDIMDQS 123 (367)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHCCGGGC----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhc-CC--CcchhHHHHHHHHHHhCCCccC----------ChhhHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 57899999998 48 9999999999999999752110 01223457899999999999999999999999
Q ss_pred CCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhhhHhhhcccCCC-----CCC
Q 020685 87 DTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 156 (322)
Q Consensus 87 ~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-----~~~ 156 (322)
++|||+||+|++||++..+|+.|+++++.+|+.+++. ...++++.+++++..++.||.+|+.+.... .++
T Consensus 124 ~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 203 (367)
T 1uby_A 124 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203 (367)
T ss_dssp CEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCC
T ss_pred CCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC
Confidence 9999999999999998567788888889999988864 236899999999999999999999886532 579
Q ss_pred HHHHHHHHhhhhhHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCC
Q 020685 157 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234 (322)
Q Consensus 157 ~~~y~~~~~~KTa~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 234 (322)
+++|++|+++|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| .|+||++||+|
T Consensus 204 ~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T 282 (367)
T 1uby_A 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCS 282 (367)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCch
Confidence 999999999999999 9999999999999 89999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhh-ChHHHHHHhcccC--ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 020685 235 APILFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 311 (322)
Q Consensus 235 lp~l~al~~-~~~~~~~l~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~ 311 (322)
||++++++. .++.++.+.+.+. +++++++++++++++|+.++++.+++++.++|.+.|+.+|.++ .++.|.
T Consensus 283 ~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~ 356 (367)
T 1uby_A 283 WLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEIFL 356 (367)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS------CTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHH
Confidence 999999998 4556666655443 3678999999999999888889999999999999999999887 789999
Q ss_pred HHHHHHHhccC
Q 020685 312 DLTHRVITRNK 322 (322)
Q Consensus 312 ~l~~~~~~R~~ 322 (322)
.|++++++|+|
T Consensus 357 ~l~~~i~~R~~ 367 (367)
T 1uby_A 357 GLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHHHHhCcC
Confidence 99999999986
No 20
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=1.8e-65 Score=474.05 Aligned_cols=258 Identities=28% Similarity=0.363 Sum_probs=226.1
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI-- 82 (322)
.++.+.++++|++..| |||+||.|++++++++|++. +.++.+|+++|+||+||||||||
T Consensus 26 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDiP~ 86 (301)
T 1rtr_A 26 MDTQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTEY-----------------ELGMKSAIALEMIHTYSLIHDDLPA 86 (301)
T ss_dssp SCCSHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTSCG-----------------GGGHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCCchh
Confidence 4688999999999989 99999999999999998631 13678999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHH--HHHHhhhHhhhcccCCCC
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL------KNTEVVTLLATVV--EHLVTGETMQMTTSSDQR 154 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~------~~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~ 154 (322)
||+|++|||+||+|++||++ .|||+||+|+++||+.+++. ...++++.+++++ ..++.||.+|+.+..+ .
T Consensus 87 ~D~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~-~ 164 (301)
T 1rtr_A 87 MDNDDYRRGKLTNHKVYGEW-TAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQ-P 164 (301)
T ss_dssp TTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-C
T ss_pred ccCCCccCCCccHHhhcCHH-HHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCC-C
Confidence 99999999999999999999 99999999999999999987 2346788888888 8899999999998776 7
Q ss_pred CCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCC
Q 020685 155 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234 (322)
Q Consensus 155 ~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 234 (322)
+++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|
T Consensus 165 ~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T 244 (301)
T 1rtr_A 165 IDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKST 244 (301)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CC
T ss_pred CCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 020685 235 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 314 (322)
Q Consensus 235 lp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~ 314 (322)
||++++ ++++++.+++|.++|.+.|+.||+++ .++.|.+|+
T Consensus 245 ~p~l~a---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~~~------~~~~L~~l~ 285 (301)
T 1rtr_A 245 YVSLLG---------------------------------KDGAEDKLTYHRDAAVDELTQIDEQF------NTKHLLEIV 285 (301)
T ss_dssp HHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHTSCTTS------CCHHHHHHH
T ss_pred HHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHH
Confidence 999994 57889999999999999999999777 678999999
Q ss_pred HHHHhccC
Q 020685 315 HRVITRNK 322 (322)
Q Consensus 315 ~~~~~R~~ 322 (322)
+++++|++
T Consensus 286 ~~i~~R~~ 293 (301)
T 1rtr_A 286 DLFYSRDH 293 (301)
T ss_dssp HHHHCC--
T ss_pred HHHHHhhc
Confidence 99999974
No 21
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=5.2e-65 Score=473.37 Aligned_cols=257 Identities=28% Similarity=0.392 Sum_probs=222.0
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI-- 82 (322)
.++.|.++++|.+..| |||+||.|++++++++|++. +.+..+|+++|+||+||||||||
T Consensus 58 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~aSLIHDDIP~ 118 (324)
T 3uca_A 58 YNKVLYDSMAYSINVG--GKRIRPILMLLSYYIYKSDY-----------------KKILTPAMAIEMIHTYSLIHDDLPC 118 (324)
T ss_dssp SCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHTTCSCG-----------------GGGHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCchh
Confidence 3788999999999889 99999999999999998642 23788999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC---C---HHHHHHHHHHH--HHHHhhhHhhhcccCCCC
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK---N---TEVVTLLATVV--EHLVTGETMQMTTSSDQR 154 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~---~---~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~ 154 (322)
||+|++|||+||+|++||++ +|||+||+|+++||+.+++.. . .++++.++++. ..++.||.+|+.+..+..
T Consensus 119 mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~ 197 (324)
T 3uca_A 119 MDNDDLRRGKPTNHKVFGEA-IAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEE 197 (324)
T ss_dssp TTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCSS
T ss_pred ccCCCCCCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCCC
Confidence 99999999999999999999 999999999999999988742 1 45777888875 679999999999987767
Q ss_pred CCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCC
Q 020685 155 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234 (322)
Q Consensus 155 ~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 234 (322)
+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|
T Consensus 198 ~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T 277 (324)
T 3uca_A 198 ISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNN 277 (324)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------C
T ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 020685 235 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 314 (322)
Q Consensus 235 lp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~ 314 (322)
||+++ +++++++.++++.++|.+.|+.||.+. +.|.+|+
T Consensus 278 ~p~l~---------------------------------al~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~~la 316 (324)
T 3uca_A 278 YITIF---------------------------------GLEECKKKCVNITEECIEILSSIKGNT--------EPLKVLT 316 (324)
T ss_dssp HHHHH---------------------------------CHHHHHHHHHHHHHHHHHHHHTSSSCC--------HHHHHHH
T ss_pred HHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCCcH--------HHHHHHH
Confidence 99999 578899999999999999999999766 7899999
Q ss_pred HHHHhccC
Q 020685 315 HRVITRNK 322 (322)
Q Consensus 315 ~~~~~R~~ 322 (322)
+|+++|++
T Consensus 317 ~~i~~R~~ 324 (324)
T 3uca_A 317 MKLLERKF 324 (324)
T ss_dssp HHHHHCCC
T ss_pred HHHHhccC
Confidence 99999975
No 22
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=7.2e-65 Score=472.45 Aligned_cols=256 Identities=28% Similarity=0.349 Sum_probs=223.4
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI-- 82 (322)
.++.|.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+||||||||
T Consensus 34 ~~~~l~~a~~y~~~~g--GKrlRP~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~aSLIHDDip~ 94 (324)
T 3ts7_A 34 MPERLHQAMRYSVLGG--GKRMRPLLTYATGQTIGVAA-----------------DLLDGPACAVEFIHVYSLIHDDLPA 94 (324)
T ss_dssp SSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCG-----------------GGTHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHhhcCccc
Confidence 3688999999999989 99999999999999998642 23788999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC--C------HHHHHHHHHHH--HHHHhhhHhhhcccCC
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK--N------TEVVTLLATVV--EHLVTGETMQMTTSSD 152 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~--~------~~~~~~~~~~~--~~~~~Gq~~d~~~~~~ 152 (322)
||+|++|||+||+|++||++ +|||+||+|+++||+.+++.. + .++++.++++. ..++.||.+|+.+..+
T Consensus 95 mD~~~~RRG~pt~h~~~G~~-~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~ 173 (324)
T 3ts7_A 95 MDDDDLRRGKPTCHKAYDEA-TAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGK 173 (324)
T ss_dssp TTCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC
T ss_pred ccCCCccCCCCchhhhcChH-HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCC
Confidence 99999999999999999999 999999999999999998864 2 25778888875 6899999999999876
Q ss_pred CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcC
Q 020685 153 QRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 231 (322)
Q Consensus 153 ~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~eg 231 (322)
.+++++|++|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++|
T Consensus 174 -~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~eg 252 (324)
T 3ts7_A 174 -KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHN 252 (324)
T ss_dssp -CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------
T ss_pred -CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcC
Confidence 7899999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 020685 232 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 311 (322)
Q Consensus 232 k~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~ 311 (322)
|+|||+++ +++++++.++++.++|.+.|+.||.+. +.|.
T Consensus 253 K~T~p~l~---------------------------------gle~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~ 291 (324)
T 3ts7_A 253 KPNYPALL---------------------------------GLSGAKEKAEEMHEAALESLAGFGPEA--------DLLR 291 (324)
T ss_dssp CCCHHHHH---------------------------------CHHHHHHHHHHHHHHHHHTTTTCCGGG--------HHHH
T ss_pred CccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCccH--------HHHH
Confidence 99999999 678999999999999999999998754 7899
Q ss_pred HHHHHHHhccC
Q 020685 312 DLTHRVITRNK 322 (322)
Q Consensus 312 ~l~~~~~~R~~ 322 (322)
+|++|+++|++
T Consensus 292 ~la~~~~~R~~ 302 (324)
T 3ts7_A 292 ELARFIIQRQS 302 (324)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHHHHhccC
Confidence 99999999974
No 23
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=1.7e-64 Score=482.21 Aligned_cols=293 Identities=18% Similarity=0.189 Sum_probs=243.4
Q ss_pred hhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020685 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (322)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~ 86 (322)
+.+.++++|.+ .| |||+||+|++++++++|++... ++..+.+..+|+++||||+||||||||||+|
T Consensus 66 ~~~~~~~~Y~~-~G--GKrlRp~Lvl~~~~~~g~~~~~-----------~~~~~~a~~lA~aiEliH~asLIHDDImD~s 131 (395)
T 2ihi_A 66 KYYKLLFDYNC-LG--GKNNRGILVILIYEYVKNRDIN-----------SSEWEKAACLAWCIEILQAAFLVADDIMDKG 131 (395)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHC---CC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhc-cC--cccHHHHHHHHHHHHhCCCCCC-----------hhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 45778899998 69 9999999999999999863211 2334668899999999999999999999999
Q ss_pred CCCCCcchhhhhcCCchh--HHHHHHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHHHhhhHhhh-cc---------
Q 020685 87 DTRRGIGSLNFVMGNKVL--AVLAGDFLLSRACVALASL-K----NTEVVTLLATVVEHLVTGETMQM-TT--------- 149 (322)
Q Consensus 87 ~~RRG~pt~~~~~G~~~~--Ail~gd~L~~~a~~~l~~~-~----~~~~~~~~~~~~~~~~~Gq~~d~-~~--------- 149 (322)
++|||+||||++||++ . |||+||+|++.+++++++. . ..++++.+++++..++.||.+|+ .|
T Consensus 132 ~~RRG~pt~h~~~g~~-~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~ 210 (395)
T 2ihi_A 132 EMRRNKYCWYLLKDVE-TKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHR 210 (395)
T ss_dssp SEETTEECGGGSTTTH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSS
T ss_pred CCCCCCCCccccCCcc-HHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccc
Confidence 9999999999999999 7 9999999999999998763 1 26899999999999999999999 22
Q ss_pred -----------cCC---CCCCHHHHHHHHhhhhhHH-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHhchhhcccc
Q 020685 150 -----------SSD---QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLD 212 (322)
Q Consensus 150 -----------~~~---~~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DD~ld 212 (322)
.+. ..+++++|++|+++|||+| |.+||++|++++|++++. .+.++.||.++|+||||+||++|
T Consensus 211 ~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD 290 (395)
T 2ihi_A 211 EIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLD 290 (395)
T ss_dssp CCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1578999999999999999 999999999999998887 88999999999999999999999
Q ss_pred ccCCccccCCchhhhhhcCCCCHHHHHHHhh-ChHHHHHHhcccC--ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 020685 213 FTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 289 (322)
Q Consensus 213 ~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~-~~~~~~~l~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~ 289 (322)
++++++.+|| .|+||++||+|||++++++. .++.++.+.+... ++++++++++++.++|++++++..++++.++|.
T Consensus 291 ~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~ 369 (395)
T 2ihi_A 291 IFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKIL 369 (395)
T ss_dssp SCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999998 4666665554433 567899999999999999999999999999999
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 020685 290 AAIDSLPENNDEDVTKSRRALLDLTHRVITRN 321 (322)
Q Consensus 290 ~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 321 (322)
+.|+.+|.++ .++.|..|++++++|.
T Consensus 370 ~~L~~lp~~~------~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 370 SAINELHHEG------IEYVLKYLLEILFTGV 395 (395)
T ss_dssp HHHTTSCCHH------HHHHHHHHHHC-----
T ss_pred HHHHhCCCch------HHHHHHHHHHHHhccC
Confidence 9999999988 9999999999999984
No 24
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=7.5e-65 Score=468.83 Aligned_cols=257 Identities=32% Similarity=0.401 Sum_probs=221.3
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI-- 82 (322)
.++.|.++++|++..| |||+||.|++++++++|++.. +.+..+|+++||||+||||||||
T Consensus 34 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------~~~~~~A~avEliH~asLIHDDIP~ 95 (302)
T 3p8l_A 34 ENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQKEME----------------TQDYQVAASLEMIHTYSLIHDDLPA 95 (302)
T ss_dssp CCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC----------------HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCcc----------------HHHHHHHHHHHHHHHHHHHHCCchh
Confidence 4788999999999989 999999999999999986432 24788999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHH--HHHHhhhHhhhcccCCCCC
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV--EHLVTGETMQMTTSSDQRC 155 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~-----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~ 155 (322)
||+|++|||+||+|++||++ +|||+||+|+++||+.+++... .++++.+++++ ..++.||.+|+.+... .+
T Consensus 96 mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~-~~ 173 (302)
T 3p8l_A 96 MDDDDLRRGKPTNHKVFGEA-TAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKV-SL 173 (302)
T ss_dssp TTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CC
T ss_pred ccCCCccCCCcchhhhcChH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC-CC
Confidence 99999999999999999999 9999999999999999998532 25778888876 6899999999998765 78
Q ss_pred CHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCH
Q 020685 156 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 235 (322)
Q Consensus 156 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tl 235 (322)
++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+||
T Consensus 174 t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~ 253 (302)
T 3p8l_A 174 TLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTY 253 (302)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCH
T ss_pred CHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC---CCCcchHHHHHHHHH
Q 020685 236 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE---NNDEDVTKSRRALLD 312 (322)
Q Consensus 236 p~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~---~~~~~~~~~~~~L~~ 312 (322)
|+++ +++.+++.++++.++|.+.|+.||. ++ .++.|..
T Consensus 254 p~l~---------------------------------~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~------~~~~L~~ 294 (302)
T 3p8l_A 254 PALL---------------------------------GIAGAKDALTHQLAEGSAVLEKIKANVPNF------SEEHLAN 294 (302)
T ss_dssp HHHH---------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCSSC------CHHHHHH
T ss_pred HHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhcccccCCh------hHHHHHH
Confidence 9999 6788999999999999999999986 56 5689999
Q ss_pred HHHHHHhc
Q 020685 313 LTHRVITR 320 (322)
Q Consensus 313 l~~~~~~R 320 (322)
|++|+++|
T Consensus 295 l~~~~~~R 302 (302)
T 3p8l_A 295 LLTQLQLR 302 (302)
T ss_dssp HHHHTSCC
T ss_pred HHHHHhhC
Confidence 99999987
No 25
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=1.7e-64 Score=468.66 Aligned_cols=255 Identities=29% Similarity=0.418 Sum_probs=210.2
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI--~ 83 (322)
++.|.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+|||||||| |
T Consensus 30 ~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~-----------------~~~~~~A~avEliH~aSLIHDDip~m 90 (317)
T 4f62_A 30 ANQLHNAMRYSLFNG--GKRIRPMLTYASAQLVGDIS-----------------SLTDASAAALESIHAYSLIHDDLPAM 90 (317)
T ss_dssp GHHHHHHHHHHHC-C--CCCHHHHHHHHHHHHHSCCC-----------------HHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred cHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCcccc
Confidence 688999999999989 99999999999999998632 34789999999999999999999 9
Q ss_pred CCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC--C----HHHHHHHHHHH--HHHHhhhHhhhcccCCCCC
Q 020685 84 DDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK--N----TEVVTLLATVV--EHLVTGETMQMTTSSDQRC 155 (322)
Q Consensus 84 D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~--~----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~ 155 (322)
|+|++|||+||+|++||++ +|||+||+|+++||+.+++.. + .++++.+++++ ..++.||.+|+.+... .+
T Consensus 91 D~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~-~~ 168 (317)
T 4f62_A 91 DNDELRRGKPTCHIQFDEA-TAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENK-NI 168 (317)
T ss_dssp CC-------CCHHHHSCHH-HHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSS-CC
T ss_pred cCCCCcCCCccHHhhcCHH-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCC-CC
Confidence 9999999999999999999 999999999999999998863 2 24677777776 4799999999998754 58
Q ss_pred CHHHHHHHHhhhhhHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCC
Q 020685 156 SMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234 (322)
Q Consensus 156 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 234 (322)
++++|++|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+|
T Consensus 169 t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T 248 (317)
T 4f62_A 169 SLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKAT 248 (317)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCC
T ss_pred CHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCc
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 020685 235 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 314 (322)
Q Consensus 235 lp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~ 314 (322)
||+++ +++++++.++++.++|.+.|+.||.. ++.|.+++
T Consensus 249 ~p~l~---------------------------------gle~a~~~a~~~~~~A~~~L~~l~~~--------~~~L~~l~ 287 (317)
T 4f62_A 249 YPKLL---------------------------------GLDGAKALVVRLHEQAIAQISEFGDK--------SQPLTDLA 287 (317)
T ss_dssp HHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHGGGGGG--------GHHHHHHH
T ss_pred HHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCchh--------HHHHHHHH
Confidence 99999 67899999999999999999999853 48999999
Q ss_pred HHHHhccC
Q 020685 315 HRVITRNK 322 (322)
Q Consensus 315 ~~~~~R~~ 322 (322)
+|+++|++
T Consensus 288 ~~~~~R~~ 295 (317)
T 4f62_A 288 NYIIDRNH 295 (317)
T ss_dssp HHHHC---
T ss_pred HHHHHhcc
Confidence 99999974
No 26
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.1e-64 Score=468.50 Aligned_cols=256 Identities=27% Similarity=0.388 Sum_probs=208.0
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI-- 82 (322)
.++.|.++++|++..| |||+||.|++++++++|++. +.+..+|+++||||+||||||||
T Consensus 34 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLIHDDIp~ 94 (302)
T 3p8r_A 34 QTLPLIEAMRYGLLLG--GKRARPYLVYITGQMLGCEL-----------------SDLDTPASAVECIHAYSLIHDDLPA 94 (302)
T ss_dssp TTSSHHHHHHHHHHSC--CSCHHHHHHHHHHHTTTCCG-----------------GGTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCccc
Confidence 3688999999999989 99999999999999998642 23788999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC--C------HHHHHHHHHHH--HHHHhhhHhhhcccCC
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK--N------TEVVTLLATVV--EHLVTGETMQMTTSSD 152 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~--~------~~~~~~~~~~~--~~~~~Gq~~d~~~~~~ 152 (322)
||+|++|||+||+|++||++ .|||+||+|+++||+.+++.. + .++++.++++. ..++.||.+|+.+..
T Consensus 95 mD~s~~RRG~pt~h~~~G~~-~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~- 172 (302)
T 3p8r_A 95 MDDDELRRGKPTCHIQFDEA-TAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAEN- 172 (302)
T ss_dssp HHCCC--------------H-HHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTT-
T ss_pred ccCCCcCCCCcchhhhcCHH-HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccC-
Confidence 99999999999999999999 999999999999999999864 1 24677788776 589999999999975
Q ss_pred CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcC
Q 020685 153 QRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 231 (322)
Q Consensus 153 ~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~eg 231 (322)
..+++++|++|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++|
T Consensus 173 ~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~eg 252 (302)
T 3p8r_A 173 RLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELN 252 (302)
T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred CCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcC
Confidence 47899999999999999999999999999999 78888899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 020685 232 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 311 (322)
Q Consensus 232 k~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~ 311 (322)
|+|||+++ ++++++..+++|.++|.+.|+.||.+. +.|.
T Consensus 253 K~T~p~l~---------------------------------~l~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~ 291 (302)
T 3p8r_A 253 KSTYPALL---------------------------------GLEGAQQKAHTLLQEALLALEAIPYNT--------EHLE 291 (302)
T ss_dssp CCCHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHTTCSSCT--------HHHH
T ss_pred CchHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCccH--------HHHH
Confidence 99999999 578899999999999999999999865 7899
Q ss_pred HHHHHHHhccC
Q 020685 312 DLTHRVITRNK 322 (322)
Q Consensus 312 ~l~~~~~~R~~ 322 (322)
+|++|+++|++
T Consensus 292 ~l~~~~~~R~~ 302 (302)
T 3p8r_A 292 EFARYVVERKN 302 (302)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHhccC
Confidence 99999999975
No 27
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.2e-64 Score=468.20 Aligned_cols=255 Identities=30% Similarity=0.387 Sum_probs=222.4
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI--~ 83 (322)
++.|.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+|||||||| |
T Consensus 29 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLIHDDip~m 89 (304)
T 3lsn_A 29 LARLYEAMRYSVMNG--GKRVRPLLAYAACEALGGKP-----------------EQANGAACAVELIHAYSLVHDDLPAM 89 (304)
T ss_dssp GHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCG-----------------GGGHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCcccc
Confidence 678999999999989 99999999999999998642 23788999999999999999999 9
Q ss_pred CCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC----C----HHHHHHHHHHHH--HHHhhhHhhhcccCCC
Q 020685 84 DDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK----N----TEVVTLLATVVE--HLVTGETMQMTTSSDQ 153 (322)
Q Consensus 84 D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~----~----~~~~~~~~~~~~--~~~~Gq~~d~~~~~~~ 153 (322)
|+|++|||+||+|++||++ .|||+||+|+++||+.+++.. + .++++.+++++. .++.||.+|+.+..+
T Consensus 90 D~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~- 167 (304)
T 3lsn_A 90 DDDDLRRGQPTTHKAFDEA-CAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGL- 167 (304)
T ss_dssp TCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC-
T ss_pred cCCCccCCCCchHhhcCHH-HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCC-
Confidence 9999999999999999999 999999999999999999864 2 247778888774 599999999999876
Q ss_pred CCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCC
Q 020685 154 RCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 232 (322)
Q Consensus 154 ~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk 232 (322)
.+++++|++|+++|||+||++||++|++++|+ +++..+.++.||.++|+||||+||++|++++++.+||+.|+|+++||
T Consensus 168 ~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK 247 (304)
T 3lsn_A 168 KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDK 247 (304)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCC
Confidence 58999999999999999999999999999999 89899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 020685 233 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLD 312 (322)
Q Consensus 233 ~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~ 312 (322)
+|||+++ +++++++.++++.++|.+.|+.||.. ++.|.+
T Consensus 248 ~T~p~l~---------------------------------~l~~a~~~a~~~~~~A~~~L~~l~~~--------~~~L~~ 286 (304)
T 3lsn_A 248 PTYPALL---------------------------------GLAAAKEYALELRDQALHALRPFDAA--------AEPLRE 286 (304)
T ss_dssp CCHHHHH---------------------------------CHHHHHHHHHHHHHHHHHHTTTSCGG--------GHHHHH
T ss_pred ccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCchh--------HHHHHH
Confidence 9999999 67899999999999999999999863 389999
Q ss_pred HHHHHHhccC
Q 020685 313 LTHRVITRNK 322 (322)
Q Consensus 313 l~~~~~~R~~ 322 (322)
|++|+++|++
T Consensus 287 l~~~~~~R~~ 296 (304)
T 3lsn_A 287 LARYIVERRS 296 (304)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhcc
Confidence 9999999964
No 28
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=1.9e-64 Score=482.02 Aligned_cols=307 Identities=16% Similarity=0.136 Sum_probs=256.1
Q ss_pred hhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020685 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (322)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~ 86 (322)
+.|.++++|.+ .| |||+||+||+++++++|+..+.....+......+...+.+..++|||||||+||||||||||+|
T Consensus 56 ~~l~~~m~Y~~-~G--GKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s 132 (390)
T 3dyh_A 56 RYLRKMMDTTC-LG--GKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNS 132 (390)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhc-CC--ccchhHHHHHHHHHHhCCccccccccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCC
Confidence 46899999999 79 9999999999999999751100000000000011111222233458999999999999999999
Q ss_pred CCCCCcchhhhhcCCchhHHHHHHHHHHHH--HHHHHcC-C-C---HHHHHHHHHHHHHHHhhhHhhhcccC--------
Q 020685 87 DTRRGIGSLNFVMGNKVLAVLAGDFLLSRA--CVALASL-K-N---TEVVTLLATVVEHLVTGETMQMTTSS-------- 151 (322)
Q Consensus 87 ~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a--~~~l~~~-~-~---~~~~~~~~~~~~~~~~Gq~~d~~~~~-------- 151 (322)
++|||+||+|++||++ .||++||+++..+ |+++++. . . .++++.+++++..++.||++|+.+.+
T Consensus 133 ~~RRG~Pt~h~~~G~~-~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~ 211 (390)
T 3dyh_A 133 VTRRGKPCWYRHPDVT-VQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPD 211 (390)
T ss_dssp CEETTEECGGGSTTCC-HHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTT
T ss_pred CCcCCCccccccCChH-HHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999 9999999999755 5777652 2 1 47899999999999999999998721
Q ss_pred --C------CCCCHHHHHHHHhhhhhHH-HHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHhchhhccccccCCccccC
Q 020685 152 --D------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV-AILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 221 (322)
Q Consensus 152 --~------~~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~-~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~G 221 (322)
. ..+++++|++|+++|||+| |++||++|++++|++++. .+.++.||.++|+||||+||++|++++++.+|
T Consensus 212 ~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~G 291 (390)
T 3dyh_A 212 VSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLG 291 (390)
T ss_dssp SCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred cccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhC
Confidence 1 2579999999999999999 999999999999998874 78899999999999999999999999999999
Q ss_pred CchhhhhhcCCCCHHHHHHHhh-ChHHHHHHhccc--CChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 020685 222 KGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGF--EDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 298 (322)
Q Consensus 222 K~~~~Dl~egk~Tlp~l~al~~-~~~~~~~l~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~ 298 (322)
| .|+||++||+|||++++++. +++.++.+.+.+ .+++++++++++++++|++++++.+++++.++|.+.|+.||.+
T Consensus 292 K-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~ 370 (390)
T 3dyh_A 292 K-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLC 370 (390)
T ss_dssp S-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9 99999999999999999998 566666665544 3678899999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 020685 299 NDEDVTKSRRALLDLTHRVITRNK 322 (322)
Q Consensus 299 ~~~~~~~~~~~L~~l~~~~~~R~~ 322 (322)
+. ..++.|..|++++++|+|
T Consensus 371 ~~----~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 371 SP----GFAASVETLWGKTYKRQK 390 (390)
T ss_dssp CH----HHHHHHHHHHHTTTTCCC
T ss_pred ch----HHHHHHHHHHHHHHcCCC
Confidence 80 038899999999999987
No 29
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=1.4e-63 Score=478.24 Aligned_cols=292 Identities=19% Similarity=0.198 Sum_probs=240.3
Q ss_pred hhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020685 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (322)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~ 86 (322)
|.+..+++|.+. | |||+||+|++++++++|+.... ++..+.++.+|+||||||+||||||||||+|
T Consensus 66 ~~~~~~~~Y~~~-G--GKRlRP~l~l~~~~~~~~~~~~-----------~~~~~~~~~~A~aiEliH~asLiHDDImD~s 131 (395)
T 3mav_A 66 KYYKLLFDYNCL-G--GKNNRGILVILIYEYVKNRDIN-----------SSEWEKAACLAWCIEILQAAFLVADDIMDKG 131 (395)
T ss_dssp HHHHHHHHHHHS-S--SCCHHHHHHHHHHHHHHC-CCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCC-C--chhhhHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHHHHHHHHHHhHHhcCC
Confidence 345566778885 9 9999999999999999864332 2445678999999999999999999999999
Q ss_pred CCCCCcchhhhhcCCchhHHHHHHHHHH--HHHHHHHcC-----CCHHHHHHHHHHHHHHHhhhHhhhcccCC-------
Q 020685 87 DTRRGIGSLNFVMGNKVLAVLAGDFLLS--RACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSD------- 152 (322)
Q Consensus 87 ~~RRG~pt~~~~~G~~~~Ail~gd~L~~--~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~------- 152 (322)
++|||+||+|++||++ .||++||+|+. .++.++... ...++++.++++...++.||.+|+.+..+
T Consensus 132 ~~RRG~pt~h~~~g~~-~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~ 210 (395)
T 3mav_A 132 EMRRNKYCWYLLKDVE-TKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHR 210 (395)
T ss_dssp SEETTEECGGGSTTTH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-C
T ss_pred CCCCCchhhhhccchH-HHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 9999999999999999 99999998774 456666532 13578999999999999999999976432
Q ss_pred -----------------CCCCHHHHHHHHhhhhhHH-HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhchhhcccc
Q 020685 153 -----------------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLD 212 (322)
Q Consensus 153 -----------------~~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~--~~~~~~l~~~g~~lG~afQi~DD~ld 212 (322)
..+++++|++|+++|||+| |.+||.+|++++|++ +...+.+++||.++|+||||+||++|
T Consensus 211 ~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD 290 (395)
T 3mav_A 211 EIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLD 290 (395)
T ss_dssp CCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2468999999999999999 899999999999875 34678999999999999999999999
Q ss_pred ccCCccccCCchhhhhhcCCCCHHHHHHHhh-ChHHHHHHhccc--CChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 020685 213 FTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGF--EDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 289 (322)
Q Consensus 213 ~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~-~~~~~~~l~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~ 289 (322)
++++++.+|| +|+||++||+|||+++|++. +++.+..+.+.. .+++.++.+.++++++|+.+++++.++++.++|.
T Consensus 291 ~~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~ 369 (395)
T 3mav_A 291 IFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKIL 369 (395)
T ss_dssp HC---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hcCCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 9999999999 69999999999999999987 455555554433 3567888999999999999999999999999999
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 020685 290 AAIDSLPENNDEDVTKSRRALLDLTHRVITR 320 (322)
Q Consensus 290 ~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R 320 (322)
+.|+.+|... .+..|+.+++++.+|
T Consensus 370 ~~l~~l~~~~------l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 370 SAINELHHEG------IEYVLKYLLEILFTG 394 (395)
T ss_dssp HHHHTSCCHH------HHHHHHHHHHHC---
T ss_pred HHHHhCCcHH------HHHHHHHHHHHHhcC
Confidence 9999999766 777788888777665
No 30
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=1.1e-64 Score=468.86 Aligned_cols=258 Identities=29% Similarity=0.423 Sum_probs=236.9
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI--~ 83 (322)
++.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+|||||||| |
T Consensus 29 ~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDiP~~ 89 (299)
T 1rqj_A 29 NTPVVETMQYGALLG--GKRLRPFLVYATGHMFGVST-----------------NTLDAPAAAVECIHAYSLIHDDLPAM 89 (299)
T ss_dssp TSHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHhHHHhCCChhh
Confidence 678999999999889 99999999999999998621 34788999999999999999999 9
Q ss_pred CCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcC-----C---CHHHHHHHHHHH--HHHHhhhHhhhcccCCC
Q 020685 84 DDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL-----K---NTEVVTLLATVV--EHLVTGETMQMTTSSDQ 153 (322)
Q Consensus 84 D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~-----~---~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~ 153 (322)
|+|++|||+||+|++||++ +|||+||+|+++||+.+++. + ..++++.+++++ ..++.||.+|+.+..+
T Consensus 90 D~s~~RRG~pt~h~~~G~~-~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~- 167 (299)
T 1rqj_A 90 DDDDLRRGLPTCHVKFGEA-NAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGK- 167 (299)
T ss_dssp TCCCEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTT-
T ss_pred cCCCCCCCCCChhhhcChH-HHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCC-
Confidence 9999999999999999999 99999999999999999875 1 135777888876 7899999999998876
Q ss_pred CCCHHHHHHHHhhhhhHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCC
Q 020685 154 RCSMDYYMQKTYYKTASLISNSCKAIALL-AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 232 (322)
Q Consensus 154 ~~~~~~y~~~~~~KTa~l~~~~~~~ga~l-a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk 232 (322)
.+++++|++|+++|||+||++||++|+++ +|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||
T Consensus 168 ~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK 247 (299)
T 1rqj_A 168 HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGK 247 (299)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTC
T ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCC
Confidence 78999999999999999999999999999 99889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 020685 233 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLD 312 (322)
Q Consensus 233 ~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~ 312 (322)
+|||+++ ++++++..+++|.++|.+.|+.||.++. .++.|.+
T Consensus 248 ~T~p~l~---------------------------------~l~~a~~~~~~~~~~A~~~L~~l~~~~~-----~~~~L~~ 289 (299)
T 1rqj_A 248 STYPALL---------------------------------GLEQARKKARDLIDDARQSLKQLAEQSL-----DTSALEA 289 (299)
T ss_dssp CCHHHHH---------------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCHHHHH
T ss_pred CcHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCCCcH-----HHHHHHH
Confidence 9999999 4567899999999999999999987331 5689999
Q ss_pred HHHHHHhccC
Q 020685 313 LTHRVITRNK 322 (322)
Q Consensus 313 l~~~~~~R~~ 322 (322)
|++++++|++
T Consensus 290 l~~~~~~R~~ 299 (299)
T 1rqj_A 290 LADYIIQRNK 299 (299)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHhccC
Confidence 9999999975
No 31
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=3e-64 Score=471.05 Aligned_cols=256 Identities=27% Similarity=0.346 Sum_probs=219.3
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI-- 82 (322)
.++.+.++++|++..| |||+||.|++++++++|++. +.++.+|+++|+||+||||||||
T Consensus 69 ~~~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLIHDDiPa 129 (335)
T 2h8o_A 69 RPQNLLEAMRHGVLNG--GKRLRPFLVIESVALLGGDA-----------------EAGLHVGAALECLHCYSLVHDDLPA 129 (335)
T ss_dssp CCHHHHHHHHHHHHTS--CSCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCchh
Confidence 5688999999999989 99999999999999998631 34788999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcC--C-----CHHHHHHHHHHH--HHHHhhhHhhhcccCCC
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL--K-----NTEVVTLLATVV--EHLVTGETMQMTTSSDQ 153 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~--~-----~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~ 153 (322)
||+|++|||+||+|++||++ +|||+||+|+++||+.+++. . ..++++.+++++ ..++.||++|+.+..+
T Consensus 130 mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~- 207 (335)
T 2h8o_A 130 MDDDDLRRGQPTVHRKFDEA-TAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKK- 207 (335)
T ss_dssp TTCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHS-
T ss_pred ccCCCcCCCCCcHhhhcChH-HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC-
Confidence 99999999999999999999 99999999999999999986 1 235788888888 8899999999998776
Q ss_pred CCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCC
Q 020685 154 RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 233 (322)
Q Consensus 154 ~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 233 (322)
..++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+
T Consensus 208 ~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~ 287 (335)
T 2h8o_A 208 APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKG 287 (335)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 020685 234 TAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 313 (322)
Q Consensus 234 Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l 313 (322)
|||+++ +++++++.+++|.++|.+.|+.||. .++.|.+|
T Consensus 288 T~p~l~---------------------------------~le~a~~~a~~~~~~A~~~L~~l~~--------~~~~L~~l 326 (335)
T 2h8o_A 288 TLVALR---------------------------------GEAWAREKLQEQVAEASELLAPYGE--------KAAILIAA 326 (335)
T ss_dssp CHHHHH---------------------------------CHHHHHHHHHHHHHHHHHHTGGGGG--------GGHHHHHH
T ss_pred cHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCch--------hHHHHHHH
Confidence 999999 5688999999999999999999985 34789999
Q ss_pred HHHHHhccC
Q 020685 314 THRVITRNK 322 (322)
Q Consensus 314 ~~~~~~R~~ 322 (322)
++++++|++
T Consensus 327 ~~~i~~R~~ 335 (335)
T 2h8o_A 327 ARFIAERKS 335 (335)
T ss_dssp HHHHHC---
T ss_pred HHHHHhccC
Confidence 999999974
No 32
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=1.1e-64 Score=478.25 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=254.0
Q ss_pred hhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020685 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (322)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~ 86 (322)
+.+.++++|.. .| |||+||++++++++++|+..+ +..+.+..+|+++|+||+||||||||||+|
T Consensus 58 ~~~~~~~~y~~-~G--GKrlRp~l~l~~~~~~g~~~~-------------~~~~~~~~~A~avEllH~asLIHDDImD~s 121 (368)
T 2her_A 58 EYYLNCIDYNV-KK--GKHIRGKILVLISSLSSAYSN-------------IKRDSIYLLGWVVEAIQALILIADDIMDSG 121 (368)
T ss_dssp HHHHHHHHHHT-TS--STTTTTC-CHHHHTTTTCCCS-------------SSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-CC--CCccchHHHHHHHHHhCCCCc-------------ccHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 56778888887 69 999999999999999975322 123568899999999999999999999999
Q ss_pred CCCCCcchhhhhcCCchhHHHHHHHHH---HHHHHHHHcC-C---CHHHHHHHHHHHHHHHhhhHhhhcccCCC-CCCH-
Q 020685 87 DTRRGIGSLNFVMGNKVLAVLAGDFLL---SRACVALASL-K---NTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM- 157 (322)
Q Consensus 87 ~~RRG~pt~~~~~G~~~~Ail~gd~L~---~~a~~~l~~~-~---~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~- 157 (322)
++|||+||+|++||+. +|||+||+|+ +.+|+++++. . ..++++.+++++..++.||.+|+.+.... .++.
T Consensus 122 ~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~ 200 (368)
T 2her_A 122 KFRRGAPCWYIVHGQS-NAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKIS 200 (368)
T ss_dssp CEETTEECHHHHTHHH-HHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHH
T ss_pred CCCCCCccHHhcCChH-HHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChH
Confidence 9999999999999999 9999999999 8888877653 2 24789999999999999999999987643 4455
Q ss_pred HHHHHHHhhhhhHH-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCC
Q 020685 158 DYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234 (322)
Q Consensus 158 ~~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 234 (322)
++|++|+++|||+| |++||++|++++|++++. .+.++.||.++|+||||+||++|++ .+|| .|+||++||+|
T Consensus 201 ~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T 275 (368)
T 2her_A 201 ERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLT 275 (368)
T ss_dssp HHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCC
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCccc
Confidence 99999999999999 999999999999998887 8899999999999999999999999 7899 99999999999
Q ss_pred HHHHHHHhh-ChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 020685 235 APILFAMEE-FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 313 (322)
Q Consensus 235 lp~l~al~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l 313 (322)
||++++++. +++.++.+.+.+..++ ++++++++++|+++++++++++|.++|.+.|+.+|.++ .|+.|..|
T Consensus 276 ~pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l 347 (368)
T 2her_A 276 WPLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHL 347 (368)
T ss_dssp HHHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHH
Confidence 999999997 5677777776666555 89999999999999999999999999999999999988 99999999
Q ss_pred HHHHHhc
Q 020685 314 THRVITR 320 (322)
Q Consensus 314 ~~~~~~R 320 (322)
++++.++
T Consensus 348 ~~~i~~~ 354 (368)
T 2her_A 348 IHQISEL 354 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 33
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=6e-64 Score=464.94 Aligned_cols=255 Identities=27% Similarity=0.402 Sum_probs=221.0
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI-- 82 (322)
.++.|.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+||||||||
T Consensus 34 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~aSLIHDDip~ 94 (313)
T 3lom_A 34 PAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVDQ-----------------GVLDIIAAALELTHCYSLIHDDLPA 94 (313)
T ss_dssp CCHHHHHHHHHHHCCS--SCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4788999999999989 99999999999999998631 35789999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcC--C--C----HHHHHHHHHHH--HHHHhhhHhhhcccCC
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL--K--N----TEVVTLLATVV--EHLVTGETMQMTTSSD 152 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~--~--~----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~ 152 (322)
||+|++|||+||+|++||++ .|||+||+|+++||+.+++. . . .++++.+++++ ..++.||.+|+.+..+
T Consensus 95 mD~~~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~ 173 (313)
T 3lom_A 95 MDNDDLRRGKPSCHKAFDEA-TAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAK 173 (313)
T ss_dssp TTCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS
T ss_pred ccCCCccCCCCCchhhcChH-HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCC
Confidence 99999999999999999999 99999999999999998864 1 1 24677777775 5899999999999877
Q ss_pred CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhc
Q 020685 153 QRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 230 (322)
Q Consensus 153 ~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~e 230 (322)
..+++++|++|+++|||+||++||++ |+++| ++++..+.++.||.++|+||||+||++|++++++.+||+.|+|+++
T Consensus 174 ~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~ 252 (313)
T 3lom_A 174 SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQAN 252 (313)
T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhc
Confidence 68899999999999999999999999 99999 8999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH
Q 020685 231 GIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL 310 (322)
Q Consensus 231 gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L 310 (322)
||+|||+++ +++++++.++++.++|.+.|+.||.+. +.|
T Consensus 253 gK~T~p~l~---------------------------------~l~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L 291 (313)
T 3lom_A 253 QKTTFATLF---------------------------------NKQQLEEEIAVHYQIAMDSLRLFGSKA--------AAL 291 (313)
T ss_dssp -CCCHHHHS---------------------------------CHHHHHHHHHHHHHHHHHTTTTTGGGG--------HHH
T ss_pred CCccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCccH--------HHH
Confidence 999999999 678899999999999999999998654 799
Q ss_pred HHHHHHHHhcc
Q 020685 311 LDLTHRVITRN 321 (322)
Q Consensus 311 ~~l~~~~~~R~ 321 (322)
.+|++|+++|+
T Consensus 292 ~~la~~~~~R~ 302 (313)
T 3lom_A 292 IELTKQLQNRS 302 (313)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999999996
No 34
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-63 Score=456.55 Aligned_cols=251 Identities=27% Similarity=0.338 Sum_probs=225.1
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI-- 82 (322)
.++.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+||||||||
T Consensus 30 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLIHDDIP~ 90 (284)
T 2ftz_A 30 WDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVEE-----------------EXLLDVAVAVELFHTASLIHDDLPP 90 (284)
T ss_dssp SCCHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCH-----------------HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCcCH-----------------HHHHHHHHHHHHHHHHHHHhCCchh
Confidence 4678999999999989 99999999999999998521 34788999999999999999999
Q ss_pred cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCC-CCCHHHHH
Q 020685 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYM 161 (322)
Q Consensus 83 ~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~y~ 161 (322)
||+|++|||+||+|++||++ .|||+||+|+++||+.+++.++.++++.+++++..++.||.+|+.+..+. .+++++|+
T Consensus 91 ~D~s~~RRG~pt~h~~~G~~-~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~ 169 (284)
T 2ftz_A 91 IDNADFRRGXPSCHRTYGED-IALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVE 169 (284)
T ss_dssp TTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred cCCCCCCCCCccHHhhcCHH-HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHH
Confidence 99999999999999999999 99999999999999999998767899999999999999999999987765 78999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHH
Q 020685 162 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 241 (322)
Q Consensus 162 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 241 (322)
+|+++|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+||+.|+|++ |+|||+++
T Consensus 170 ~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~-- 242 (284)
T 2ftz_A 170 RMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXV-- 242 (284)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHH--
T ss_pred HHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHH--
Confidence 999999999999999999999998877 89999999999999999999999999999999999999 99999999
Q ss_pred hhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHH-HHHHHHHHHhc
Q 020685 242 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRA-LLDLTHRVITR 320 (322)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~-L~~l~~~~~~R 320 (322)
+++++++.+++|.++|.+.|+.||. + .++. |.+|++++++|
T Consensus 243 -------------------------------~l~~a~~~a~~~~~~A~~~L~~l~~-~------~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 243 -------------------------------GIQXAREMADXYYEEVLXGIESEGL-F------RTLFLLXELXQMVEER 284 (284)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHTTC-H------HHHHHHHHHHHHHHTC
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHhCCc-h------hHHHHHHHHHHHHHcC
Confidence 4678999999999999999999987 6 7788 99999999987
No 35
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.4e-63 Score=461.04 Aligned_cols=258 Identities=25% Similarity=0.337 Sum_probs=224.6
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHH--HHHHHHHHHHHHHHHHHhhh
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ--QCIAEITEMIHVASLLHDDV 82 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~la~avEllh~asLihDDI 82 (322)
.++.|.++++|++..| |||+||.|++++++++|++.. .+ ..+|+++|+||+||||||||
T Consensus 32 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~~~A~aiEliH~aSLIHDDi 92 (309)
T 3pde_A 32 QDAQLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFV-----------------PERHWRPVMALELLHTYSLIHDDL 92 (309)
T ss_dssp SCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------HHhHhHHHHHHHHHHHHHHHHCCc
Confidence 3688999999999989 999999999999999986432 24 78999999999999999999
Q ss_pred --cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHH--HHHHhhhHhhhcccCCC
Q 020685 83 --LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV--EHLVTGETMQMTTSSDQ 153 (322)
Q Consensus 83 --~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~-----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~ 153 (322)
||+|++|||+||+|++||++ +|||+||+|+++||+.+++... .++++.+++++ ..++.||.+|+.+...
T Consensus 93 P~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~- 170 (309)
T 3pde_A 93 PAMDNDALRRGEPTNHVKFGAG-MATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHV- 170 (309)
T ss_dssp TTTTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC-
T ss_pred hhccCCCCCCCCcchhhhcChH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCC-
Confidence 99999999999999999999 9999999999999999988642 25778888876 6899999999998765
Q ss_pred CCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCC
Q 020685 154 RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 233 (322)
Q Consensus 154 ~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 233 (322)
.+++++|++|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+||++|+|+++||+
T Consensus 171 ~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~ 250 (309)
T 3pde_A 171 NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKN 250 (309)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSS
T ss_pred CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCc
Confidence 68999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 020685 234 TAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 313 (322)
Q Consensus 234 Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l 313 (322)
|||+++ +++.+...++++.++|.+.|+.+|.+-. .+. |.+|
T Consensus 251 T~p~l~---------------------------------al~~a~~~~~~~~~~a~~~l~~~~~~~~-----~~~-L~~l 291 (309)
T 3pde_A 251 TYPGKL---------------------------------GLIGANQALIDTIHSGQAALQGLPTSTQ-----RDD-LAAF 291 (309)
T ss_dssp SHHHHH---------------------------------CHHHHHHHHHHHHHHHHHHHHTSCCCHH-----HHH-HHGG
T ss_pred cHHHHH---------------------------------HHHHhHHHHHHHHHHHHHHHHHhhhccC-----HHH-HHHH
Confidence 999999 5677889999999999999999776531 233 9999
Q ss_pred HHHHHhccC
Q 020685 314 THRVITRNK 322 (322)
Q Consensus 314 ~~~~~~R~~ 322 (322)
++|+++|+.
T Consensus 292 ~~~~~~r~~ 300 (309)
T 3pde_A 292 FSYFDTERV 300 (309)
T ss_dssp GGGSCTTTT
T ss_pred HHHHHHhhc
Confidence 999999964
No 36
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=4.7e-64 Score=462.85 Aligned_cols=252 Identities=29% Similarity=0.364 Sum_probs=210.1
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI--~ 83 (322)
++.|.++++|. ..| |||+||.|++++++++|++ .+.+..+|+++|+||+|||||||| |
T Consensus 27 ~~~l~~~~~y~-~~g--GKrlRp~L~l~~~~~~g~~-----------------~~~~~~~A~avEliH~asLIHDDip~m 86 (297)
T 3m0g_A 27 AGDLRDAMAYA-AQG--GKRLRAFLAIESAAIHGIS-----------------MAQAMPAALAVEALHAYSLVHDDMPCM 86 (297)
T ss_dssp CSHHHHHHHHH-HSC--SCCHHHHHHHHHHHHTTCC-----------------HHHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHH-cCC--CCcHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 67899999999 878 9999999999999999863 135789999999999999999999 9
Q ss_pred CCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC--C----HHHHHHHHHHH--HHHHhhhHhhhcccC-CCC
Q 020685 84 DDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK--N----TEVVTLLATVV--EHLVTGETMQMTTSS-DQR 154 (322)
Q Consensus 84 D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~--~----~~~~~~~~~~~--~~~~~Gq~~d~~~~~-~~~ 154 (322)
|+|++|||+||+|++||++ +|||+||+|+++||+.+++.. . .++++.+++++ ..++.||.+|+.+.. +..
T Consensus 87 D~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~ 165 (297)
T 3m0g_A 87 DNDDLRRGLPTVHKKWDDA-TAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVP 165 (297)
T ss_dssp TCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSC
T ss_pred CCCCccCCCCCchhhcChH-HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCC
Confidence 9999999999999999999 999999999999999998753 2 35788899888 789999999999872 347
Q ss_pred CCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCC
Q 020685 155 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234 (322)
Q Consensus 155 ~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 234 (322)
+++++|++|+++|||+||++||++|++++|++++ .++.||.++|+||||+||++|++++++.+||+.|+|+++||+|
T Consensus 166 ~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T 242 (297)
T 3m0g_A 166 LTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKAT 242 (297)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC---------------------CC
T ss_pred CCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCcc
Confidence 8999999999999999999999999999999877 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 020685 235 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 314 (322)
Q Consensus 235 lp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~ 314 (322)
||+++ +++++++.++++.++|.+.|+.||.+. +.|.+|+
T Consensus 243 ~p~l~---------------------------------~l~~a~~~~~~~~~~A~~~L~~~~~~~--------~~L~~l~ 281 (297)
T 3m0g_A 243 FVSLL---------------------------------GLAGAKSRAADLVAEAEAALAPYGEAA--------STLRACA 281 (297)
T ss_dssp HHHHH---------------------------------CSSHHHHHHHHHHHHHHHHTGGGGGGG--------HHHHHHH
T ss_pred HHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCCCH--------HHHHHHH
Confidence 99999 567899999999999999999999766 7899999
Q ss_pred HHHHhccC
Q 020685 315 HRVITRNK 322 (322)
Q Consensus 315 ~~~~~R~~ 322 (322)
+|+++|++
T Consensus 282 ~~~~~R~~ 289 (297)
T 3m0g_A 282 RYVIERDK 289 (297)
T ss_dssp HHHTC---
T ss_pred HHHHHhcc
Confidence 99999974
No 37
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=4.7e-63 Score=455.79 Aligned_cols=257 Identities=27% Similarity=0.408 Sum_probs=225.8
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~ 85 (322)
+|.|.++++|++..| |||+||.|++++++++|++.+ .+..+|+++|+||+||||||||||+
T Consensus 27 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~avEliH~asLIHDDi~D~ 87 (295)
T 3ipi_A 27 DPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSYS-----------------RSLNAALAVEMMHSASLIHDDLLDQ 87 (295)
T ss_dssp SHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHSCCG-----------------GGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHCcCcCC
Confidence 478999999999989 999999999999999986422 3678999999999999999999999
Q ss_pred CCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHh
Q 020685 86 ADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTY 165 (322)
Q Consensus 86 ~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~ 165 (322)
|++|||+||+|++||++ .|||+||||+++||+.+++. +.++++.+++++..++.||.+|+.+..+ .+++++|++|++
T Consensus 88 s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~ll~~~-~~~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~t~~~y~~~i~ 164 (295)
T 3ipi_A 88 GLVRRNLPSAPEKFGPS-GALLCGDYLIAKSIAFISPY-GEKVIQDFGKAGMDMAEGEVLDLKLEDE-SFGENDYFKCIY 164 (295)
T ss_dssp HTSCTTSCCCCCSSCHH-HHHHHHHHHHHHHHHHHGGG-CHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHH
T ss_pred CCCCCCCccHHHhcCcc-HHHHHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHHHHccchHHHHccCC-CCCHHHHHHHHH
Confidence 99999999999999999 99999999999999999876 4789999999999999999999998765 478899999999
Q ss_pred hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhhCh
Q 020685 166 YKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP 245 (322)
Q Consensus 166 ~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~ 245 (322)
+|||+||++||++|++++|++++..+.++.||.++|+||||+||++|+++++. | +|+.+||+|||++++++..+
T Consensus 165 ~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--g----kd~~~gk~Tlp~l~al~~~~ 238 (295)
T 3ipi_A 165 KKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--G----KESKFTSETLPHIYMKSTSK 238 (295)
T ss_dssp HHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHTTTSCH
T ss_pred hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--C----CCcccCcccHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999998763 4 46789999999999886532
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 020685 246 QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 321 (322)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 321 (322)
.+++++|++.+++|.++|++.|+.||+++ .++.|.+|++|++.|.
T Consensus 239 -------------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 239 -------------------------EEALKKSIDCVKLHVAAAKETLETFRECP------ARDKLFQITDYITVDM 283 (295)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHHHHHHHHTTGGG
T ss_pred -------------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHHhC
Confidence 13699999999999999999999999888 8999999999999874
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=3.6e-61 Score=445.94 Aligned_cols=263 Identities=25% Similarity=0.305 Sum_probs=220.8
Q ss_pred CCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh-
Q 020685 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV- 82 (322)
Q Consensus 4 ~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI- 82 (322)
+.+|.|.++++|++..| |||+||.|++++++++|++.. .++..+.+..+|+++|+||++|||||||
T Consensus 31 ~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~~-----------~~~~~~~~~~~A~aiEliH~aSLIHDDIp 97 (311)
T 3llw_A 31 SFHPYLEKAFFEMVLNG--GKRFRPKLFLAVLCALVGQKD-----------YSNQQTEYFKIALSIECLHTYSLIHDDLP 97 (311)
T ss_dssp SSCSSHHHHHHHHHHSC--CCCHHHHHHHHHHHHHSCHHH-----------HHHSHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCcHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhCCCcc-----------cccchHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 45789999999999989 999999999999999986310 0122356889999999999999999999
Q ss_pred -cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHc--CCC---HHHHHHHHHH--HHHHHhhhHhhhcccCCCC
Q 020685 83 -LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALAS--LKN---TEVVTLLATV--VEHLVTGETMQMTTSSDQR 154 (322)
Q Consensus 83 -~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~--~~~---~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~ 154 (322)
||+|++|||+||+|++||++ .|||+||+|++.||+.+++ ++. .++++.++++ +..++.||.+|+.+.. ..
T Consensus 98 ~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~-~~ 175 (311)
T 3llw_A 98 CMDNAALRRNHPTLHAKYDET-TAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFEN-TP 175 (311)
T ss_dssp TTTCCSEETTEECHHHHTCHH-HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT-SC
T ss_pred ccCCCcccCCCCchhhhcCHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC-CC
Confidence 99999999999999999999 9999999999999999987 332 2467778877 5789999999999874 47
Q ss_pred CCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCC
Q 020685 155 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA-ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 233 (322)
Q Consensus 155 ~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~-~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 233 (322)
+++++|++|+++|||+||++||++|++++|++++.. +.++.||.++|+||||+||++|++++++.+||+.++ ++||+
T Consensus 176 ~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~ 253 (311)
T 3llw_A 176 LNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKN 253 (311)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCS
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcc
Confidence 899999999999999999999999999999998888 899999999999999999999999999999999876 99999
Q ss_pred CHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH-HHHHHH
Q 020685 234 TAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS-RRALLD 312 (322)
Q Consensus 234 Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~-~~~L~~ 312 (322)
|||+++ +++.++..++++.++|.+.|+.|+.-. .. .+.|++
T Consensus 254 T~p~l~---------------------------------~l~~a~~~~~~~~~~a~~~l~~~~~~~-----~~~~~~l~~ 295 (311)
T 3llw_A 254 SFVNLL---------------------------------GLERANNYAQTLKTEVLNDLDALKPAY-----PLLQENLNA 295 (311)
T ss_dssp CHHHHH---------------------------------CHHHHHHHHHHHHHHHHHHHTTSTTTC-----HHHHHHHHH
T ss_pred hHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhhhccccC-----ccHHHHHHH
Confidence 999999 667889999999999999999966322 02 478999
Q ss_pred HHHHHHhcc
Q 020685 313 LTHRVITRN 321 (322)
Q Consensus 313 l~~~~~~R~ 321 (322)
|++|+++|.
T Consensus 296 l~~~~~~r~ 304 (311)
T 3llw_A 296 LLNTLFKGE 304 (311)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHhcc
Confidence 999999995
No 39
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=6.7e-61 Score=440.33 Aligned_cols=254 Identities=26% Similarity=0.344 Sum_probs=215.1
Q ss_pred CCchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh-
Q 020685 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV- 82 (322)
Q Consensus 4 ~~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI- 82 (322)
+.+|.+.++++|++..| |||+||.|++++++++|++ ..+.+..+|+++|+||+||||||||
T Consensus 22 ~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~~~~----------------~~~~~~~~A~aiEliH~aSLIHDDIp 83 (291)
T 3npk_A 22 SFHPFFNEALALMLKAG--GKHFRAQLLLSVVQSNKPE----------------LLNQALDVALALEFIHTYSLIHDDLP 83 (291)
T ss_dssp SSCSSHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCGG----------------GHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 45789999999999889 9999999999999999742 1245889999999999999999999
Q ss_pred -cCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC-C----HHHHHHHHHH--HHHHHhhhHhhhcccCCCC
Q 020685 83 -LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK-N----TEVVTLLATV--VEHLVTGETMQMTTSSDQR 154 (322)
Q Consensus 83 -~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~-~----~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~ 154 (322)
||+|++|||+||+|++||++ .|||+||+|++.||+.+++.. + .++++.++++ +..++.||.+|+.+... .
T Consensus 84 ~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~-~ 161 (291)
T 3npk_A 84 AMDNADFRRGIPTLHKSYDET-TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDK-R 161 (291)
T ss_dssp TTTCCSEETTEECHHHHTCHH-HHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-C
T ss_pred cccCCCCCCCCCchhhhcCHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC-C
Confidence 99999999999999999999 999999999999999998753 2 2577888888 88999999999998754 6
Q ss_pred CCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCC
Q 020685 155 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 234 (322)
Q Consensus 155 ~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 234 (322)
+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.+.| +||+|
T Consensus 162 ~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T 239 (291)
T 3npk_A 162 LSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNS 239 (291)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CC
T ss_pred CCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcch
Confidence 8999999999999999999999999999999999899999999999999999999999999999999998776 99999
Q ss_pred HHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 020685 235 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 314 (322)
Q Consensus 235 lp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~ 314 (322)
||+++ +++.+...++++.++|.+.|+.|+.+ ..+.|++|+
T Consensus 240 ~p~l~---------------------------------~l~~a~~~~~~~~~~a~~~l~~~~~~-------~~~~l~~la 279 (291)
T 3npk_A 240 FVNLL---------------------------------GLEQAIKTKENLLNECEQDLEKLNEK-------LAQMIQNLI 279 (291)
T ss_dssp HHHHH---------------------------------CHHHHHHHHHHHHHHHHHHHHTSCHH-------HHHHHHHHH
T ss_pred HHHHH---------------------------------HHHHhHHHHHHHHHHHHHHHHHhchh-------HHHHHHHHH
Confidence 99999 56778889999999999999999643 257899999
Q ss_pred HHHHh
Q 020685 315 HRVIT 319 (322)
Q Consensus 315 ~~~~~ 319 (322)
.+.++
T Consensus 280 ~~~~~ 284 (291)
T 3npk_A 280 IQYLE 284 (291)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 98765
No 40
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=7.7e-61 Score=454.73 Aligned_cols=284 Identities=15% Similarity=0.173 Sum_probs=237.2
Q ss_pred hHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 020685 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 87 (322)
Q Consensus 8 ~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~~~ 87 (322)
.+.++++|.+. | |||+||++++++++++++.... ..+.++.+||||||||+||||||||||+|+
T Consensus 59 ~~~~~l~Y~~~-G--GKrlRp~l~~~~~~~~~~~~~~-------------~~e~~~~la~aiEliH~asLiHDDimD~s~ 122 (368)
T 2q58_A 59 YYLNCIDYNVK-K--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSGK 122 (368)
T ss_dssp HHHHHHHHHTT-C--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC-C--ccchhHHHHHHHHHHhCCCccC-------------CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 36789999985 9 9999999999999999864321 235678899999999999999999999999
Q ss_pred CCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhhhHhhhcccC--CCCCCHH
Q 020685 88 TRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-------TEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMD 158 (322)
Q Consensus 88 ~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~-------~~~~~~~~~~~~~~~~Gq~~d~~~~~--~~~~~~~ 158 (322)
+|||+||+|++||++ .|||+||+|++.|++++.+... .++++.+++++..++.||.+|+.+.. +...+++
T Consensus 123 ~RRG~pt~h~~~G~~-~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e 201 (368)
T 2q58_A 123 FRRGAPCWYIVHGQS-NAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISE 201 (368)
T ss_dssp EETTEECHHHHTHHH-HHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHH
T ss_pred CCCCCCccccCcchh-hHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHH
Confidence 999999999999999 9999999999999999977542 36788999999999999999998754 3356789
Q ss_pred HHHHHHhhhhhHH-HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCH
Q 020685 159 YYMQKTYYKTASL-ISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 235 (322)
Q Consensus 159 ~y~~~~~~KTa~l-~~~~~~~ga~la~--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tl 235 (322)
+|++|+.+|||+| |.+||.+|++++| ++++..+.++.||.++|+||||+||++|+++ ||+.|+||++||+||
T Consensus 202 ~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~ 276 (368)
T 2q58_A 202 RYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTW 276 (368)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHH
Confidence 9999999999999 7999999999998 4667778899999999999999999999985 899999999999999
Q ss_pred HHHHHHhh-ChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHH----HH
Q 020685 236 PILFAMEE-FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRR----AL 310 (322)
Q Consensus 236 p~l~al~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~----~L 310 (322)
|+++|++. +++.++.+.+.+.... ..+.+++...+..+.+.+.++++.+++.+.++.+|... .++ .|
T Consensus 277 p~i~al~~~~~~~r~~L~~~~~~~~--~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~------~k~~l~~ll 348 (368)
T 2q58_A 277 PLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLI 348 (368)
T ss_dssp HHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCCH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHH
Confidence 99999998 4567777766554322 33445555566677778888889999999999999876 454 45
Q ss_pred HHHHHHHHhcc
Q 020685 311 LDLTHRVITRN 321 (322)
Q Consensus 311 ~~l~~~~~~R~ 321 (322)
..+++++++|+
T Consensus 349 ~kI~~~~~~rk 359 (368)
T 2q58_A 349 HQISELITNSR 359 (368)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHHhh
Confidence 55666676665
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=3.3e-59 Score=429.26 Aligned_cols=244 Identities=23% Similarity=0.272 Sum_probs=219.5
Q ss_pred CchhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 020685 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLD 84 (322)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D 84 (322)
.++.+.++++|++. | |||+||.|++++++++|++. +.+..+|+++|++|+||||||||||
T Consensus 34 ~~~~l~~~~~y~~~-g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLIHDDi~D 93 (289)
T 2azj_A 34 RDWDLVDISSYILK-D--GKRFRGTLNMFFTVALGGDI-----------------KDSYGGALAIEILHSASLALCDIVD 93 (289)
T ss_dssp SCTTHHHHHHHHHS-C--CCCHHHHHHHHHHHHTTCCG-----------------GGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35679999999999 9 99999999999999998631 1367899999999999999999999
Q ss_pred CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHH
Q 020685 85 DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL-ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 163 (322)
Q Consensus 85 ~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l-~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~ 163 (322)
+|++|||+||+|.+||++ .|||+||+|+++||+.+ ++.+ +.+++.+++++..++.||.+|+.+ +++|++|
T Consensus 94 ~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~-------~~~y~~~ 164 (289)
T 2azj_A 94 LDATRRGDKAAWVVYGNR-KVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGALRDMYD-------NSDYIRT 164 (289)
T ss_dssp TCCBSSSSBCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTTTT-------TSCHHHH
T ss_pred CCCCCCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHH
Confidence 999999999999999999 99999999999999999 8765 579999999999999999999975 5779999
Q ss_pred HhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHHHhh
Q 020685 164 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 243 (322)
Q Consensus 164 ~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~ 243 (322)
+++|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++++ ||+ |+++||.|||+++ +.
T Consensus 165 i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp~l~--~~ 234 (289)
T 2azj_A 165 IELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLFKYY--RE 234 (289)
T ss_dssp HHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGHHHH--TT
T ss_pred HHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHHHHH--Hc
Confidence 99999999999999999999 99988999999999999999999999999986 464 8999999999999 22
Q ss_pred ChHHHHHHhcccCChhhHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHhccCCC-CCCcchHHHHHHHHHHHHHHHhcc
Q 020685 244 FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKT-RELAVKHANLAAAAIDSLPE-NNDEDVTKSRRALLDLTHRVITRN 321 (322)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~~a~~~l~~lp~-~~~~~~~~~~~~L~~l~~~~~~R~ 321 (322)
.. .+.+ +..+++|.++|.+.|+.||. ++ .++.|.++++++++|.
T Consensus 235 ~g----------------------------~~~a~~~~a~~~~~~A~~~L~~lp~~~~------~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 235 GK----------------------------LEEYVRSVYLEYKQKYDELISNIPFQSK------YLSEIRSLPEFLANGL 280 (289)
T ss_dssp TC----------------------------HHHHHHHHHHHHHHHHHHHHHTSCCCGG------GHHHHHTHHHHHHHHH
T ss_pred CC----------------------------HHHHHHHHHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhcc
Confidence 11 1112 45899999999999999998 66 7899999999999985
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=6.3e-58 Score=422.27 Aligned_cols=243 Identities=32% Similarity=0.429 Sum_probs=213.8
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI--~ 83 (322)
++.+.++++|++..| |||+||.|++++++++|++. +.++.+|+++|+||+|||||||| |
T Consensus 37 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDip~m 97 (293)
T 2j1p_A 37 PLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEE-----------------SLAMPAACAVEMIHTMSLIHDDLPCM 97 (293)
T ss_dssp SHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCchhc
Confidence 467999999999988 99999999999999997521 34788999999999999999998 9
Q ss_pred CCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC-----CHHHHH---HHHHHH--HHHHhhhHhhhcccCC-
Q 020685 84 DDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK-----NTEVVT---LLATVV--EHLVTGETMQMTTSSD- 152 (322)
Q Consensus 84 D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~-----~~~~~~---~~~~~~--~~~~~Gq~~d~~~~~~- 152 (322)
|+|++|||+||+|++||++ .|||+||+|+++||+.+++.. ...+++ .+++++ ..++.||.+|+.+..+
T Consensus 98 D~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~ 176 (293)
T 2j1p_A 98 DNDDLRRGKPTNHKVYGED-VAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLD 176 (293)
T ss_dssp TCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CC
T ss_pred cCCCCCCCCCchhhhcCHH-HHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCC
Confidence 9999999999999999999 999999999999999998742 233444 455554 5799999999998765
Q ss_pred -CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcC
Q 020685 153 -QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 231 (322)
Q Consensus 153 -~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~eg 231 (322)
..+++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++++
T Consensus 177 ~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~-------------- 242 (293)
T 2j1p_A 177 LNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS-------------- 242 (293)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------------
Confidence 35688999999999999999999999999999999999999999999999999999999999874
Q ss_pred CCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 020685 232 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 311 (322)
Q Consensus 232 k~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~ 311 (322)
|.|+|+++ +++++++.+++|.++|.+.|+.|| ++ .++.|.
T Consensus 243 K~T~p~l~---------------------------------gle~a~~~a~~~~~~A~~~L~~l~-~~------~~~~L~ 282 (293)
T 2j1p_A 243 KLTYPKLM---------------------------------GLEKSREFAEKLNTEARDQLLGFD-SD------KVAPLL 282 (293)
T ss_dssp CCCHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHTTTSC-TT------TTHHHH
T ss_pred cccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCC-cH------HHHHHH
Confidence 89999999 678999999999999999999998 44 468999
Q ss_pred HHHHHHHhccC
Q 020685 312 DLTHRVITRNK 322 (322)
Q Consensus 312 ~l~~~~~~R~~ 322 (322)
+|++++++|++
T Consensus 283 ~l~~~~~~R~~ 293 (293)
T 2j1p_A 283 ALANYIANRQN 293 (293)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHhhcC
Confidence 99999999975
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=3.7e-53 Score=386.18 Aligned_cols=200 Identities=30% Similarity=0.419 Sum_probs=174.5
Q ss_pred CCC-chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020685 3 VAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (322)
Q Consensus 3 ~~~-~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDD 81 (322)
.+. +|.|.++++|++..| |||+||.|++++++++|+.. ...+.+..+|+++|+||+|||||||
T Consensus 26 ~~~~~~~l~~~~~y~~~~g--GKrlRp~Lvll~~~~~g~~~--------------~~~~~~~~~A~aiEliH~aSLIHDD 89 (285)
T 4fp4_A 26 EELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSIDRRS--------------IMDPRILEAAAIVELLHVVSLLQDD 89 (285)
T ss_dssp TTCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHCGGG--------------GGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCC--------------CChHHHHHHHHHHHHHHHHHHHHCC
Confidence 444 889999999999988 99999999999999998521 0124578999999999999999999
Q ss_pred hcCCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020685 82 VLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 161 (322)
Q Consensus 82 I~D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 161 (322)
|||+|++|||+||+|++||++ .|||+||+|+++|++.+++.+ +++++.+++++..++.||.+|+.+..+.
T Consensus 90 ImD~s~~RRG~Pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~-~~~~~~ls~~~~~~~~GQ~lDl~~~~~~-------- 159 (285)
T 4fp4_A 90 VMDQHDQRRGIKTPRAMYGDG-RAIVASDWLIAESIKMAVNLG-ADVVTYLADVAQRLSVGQALDLEGERDK-------- 159 (285)
T ss_dssp HHTTCSBSSSSBCHHHHHCHH-HHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHTTCHHH--------
T ss_pred CCCCCCCCCCCCcHHHhcChH-HHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhHHHHHhccccc--------
Confidence 999999999999999999999 999999999999999999875 4899999999999999999999886431
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcC
Q 020685 162 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 231 (322)
Q Consensus 162 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~eg 231 (322)
|+++|||+||++||++|++++|++ +..+.+++||.++|+||||+||++|++++++ .||+.|+||+++
T Consensus 160 -~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 160 -AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp -HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred -hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 999999999999999999999999 8889999999999999999999999999865 688899999999
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=8.1e-50 Score=364.47 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=165.3
Q ss_pred CCch-hHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020685 4 AEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (322)
Q Consensus 4 ~~~~-~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI 82 (322)
+..| .|.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+||||||||
T Consensus 22 ~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~aSLIHDDI 82 (274)
T 3kra_B 22 IRPPETVFGPMHHLTFAA--PATAASTLCLAACELVGGDR-----------------SQAMAAAAAIHLVHAAAYVHEHL 82 (274)
T ss_dssp CCSSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCG-----------------GGGHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344 4999999999889 99999999999999998642 23688999999999999999999
Q ss_pred c-CCCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCH-------HHHHHH---HHHH--HHHHhhhHhhhcc
Q 020685 83 L-DDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT-------EVVTLL---ATVV--EHLVTGETMQMTT 149 (322)
Q Consensus 83 ~-D~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~~-------~~~~~~---~~~~--~~~~~Gq~~d~~~ 149 (322)
+ |+++.|||+||+|++||++ +|||+||+|+++||+.+++...+ .+++.+ ++++ ..++.||.+|+.+
T Consensus 83 ~~dD~d~RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~ 161 (274)
T 3kra_B 83 PLTDGSRPVSKPAIQHKYGPN-VELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEI 161 (274)
T ss_dssp CCSSSSSCCCSSCCCCSSCHH-HHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTC
T ss_pred cccCCccCCCCCCchhhcChH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhc
Confidence 8 6667899999999999999 99999999999999999886542 344444 4444 5689999999999
Q ss_pred cCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhcc
Q 020685 150 SSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 210 (322)
Q Consensus 150 ~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ 210 (322)
..+ .+++++|++|+++|||+||++||++|++++|++++.++.+++||.++|++|||+||.
T Consensus 162 ~~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 162 VDG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp CTT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 866 789999999999999999999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=3.3e-48 Score=353.83 Aligned_cols=182 Identities=12% Similarity=0.136 Sum_probs=158.9
Q ss_pred chhHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020685 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (322)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~lRp~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~la~avEllh~asLihDDI~D~ 85 (322)
++.|.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+||||||||+|.
T Consensus 30 p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~aSLIHDDI~D~ 90 (273)
T 3qkc_B 30 PESVFEPMHHLTFAA--PRTSASALCVAACELVGGDR-----------------SDAMAAAAAVHLMHVAAYTHENLPLT 90 (273)
T ss_dssp SSTTHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCG-----------------GGTHHHHHHHHHHHHHHHHHHSCCBT
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 335999999999889 99999999999999998642 23788999999999999999999999
Q ss_pred CCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC------HHHHHHHH---HHH--HHHHhhhHhhhcccCCCC
Q 020685 86 ADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN------TEVVTLLA---TVV--EHLVTGETMQMTTSSDQR 154 (322)
Q Consensus 86 ~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~------~~~~~~~~---~~~--~~~~~Gq~~d~~~~~~~~ 154 (322)
|. |||+||+|++||++ +|||+||+|+++||+.+++... ..+++.+. +++ ..++.||.+|+.+.. .
T Consensus 91 d~-RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~--~ 166 (273)
T 3qkc_B 91 DG-PMSKSEIQHKFDPN-IELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQ--L 166 (273)
T ss_dssp TB-CSSSSCCCCSSCHH-HHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCCS--S
T ss_pred cc-CCCCCCchhhcCHH-HHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC--C
Confidence 99 99999999999999 9999999999999999987542 34455544 444 578999999998843 3
Q ss_pred CCHHHHHH-HHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccc
Q 020685 155 CSMDYYMQ-KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 211 (322)
Q Consensus 155 ~~~~~y~~-~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~l 211 (322)
.+. +|++ |+++|||+||++||++|++++|++++..+.+++||.++|+||||+||+.
T Consensus 167 ~~~-eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 167 NDL-ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp CCH-HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 454 5655 6699999999999999999999999999999999999999999999996
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=96.79 E-value=0.12 Score=46.74 Aligned_cols=131 Identities=11% Similarity=0.010 Sum_probs=80.7
Q ss_pred HHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccC
Q 020685 136 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 215 (322)
Q Consensus 136 ~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~ 215 (322)
+..+..|..+|+... ...|++++..-+++-.|+...+.+. +++..+++ ...++.++|.|||+.|=+.|+
T Consensus 106 ~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv-- 174 (294)
T 4hd1_A 106 FLRLIEANRRDQRKH--TYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDI-- 174 (294)
T ss_dssp HHHHHHHHHHHHHCS--BCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTH--
T ss_pred HHHHHHHHHhccccC--CCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhc--
Confidence 456788888888654 2468888777666655555555443 34444544 345678999999999877776
Q ss_pred CccccCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 020685 216 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 295 (322)
Q Consensus 216 ~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~l 295 (322)
+.|+..|++-+|.-..-+..-....+... ..+ +.+.. .+..-...++.++++|...+..+
T Consensus 175 ---------~eD~~~gR~YlP~~~l~~~gv~~~dl~~~-~~~-~~~~~---------~~~~~~~~A~~~~~~a~~~~~~l 234 (294)
T 4hd1_A 175 ---------DRDLALGRIYVPRADLEQFGATLDDIRAR-RAT-DGVRR---------CIALEVDRAQALFDEGRRLESLV 234 (294)
T ss_dssp ---------HHHHHTTCBCSCHHHHHTTTCCHHHHHTT-CCC-HHHHH---------HHHHHHHHHHHHHHHHGGGGGSS
T ss_pred ---------hhhhccCceeCCHHHHHHcCCCHHHHhcC-CCC-HHHHH---------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 57888999999976544332122222222 122 22222 12334456677777777777777
Q ss_pred CC
Q 020685 296 PE 297 (322)
Q Consensus 296 p~ 297 (322)
|.
T Consensus 235 p~ 236 (294)
T 4hd1_A 235 PP 236 (294)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=96.62 E-value=0.091 Score=48.68 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchh
Q 020685 128 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 207 (322)
Q Consensus 128 ~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~ 207 (322)
+...+.+....+..|-..|+.. ...|++++..-+++-.|....+.+.+-..-...++. .......+.++|.|||+.
T Consensus 112 ~~~~i~~~~~~m~~gm~~dl~~---~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQlt 187 (343)
T 3vj8_A 112 YQTVIADICRRMGIGMAEFLDK---HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKT 187 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGC---CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHH
Confidence 4445556666777788778752 356888888877777777777776665443222332 234567889999999999
Q ss_pred hccccccCCccccCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 020685 208 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 287 (322)
Q Consensus 208 DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 287 (322)
|=+.|+ +.|+..|++-||.=..-+..-....++. +..-..+.. .+......++.+..+
T Consensus 188 NilRDv-----------~eD~~~gR~YlP~e~l~~~g~~~~dl~~-----~~~~~~~~~------~l~~l~~~A~~~~~~ 245 (343)
T 3vj8_A 188 NIIRDY-----------LEDQQGGREFWPQEVWSRYVKKLGDFAK-----PENIDLAVQ------CLNELITNALHHIPD 245 (343)
T ss_dssp HHHHTH-----------HHHHHTTCCCSCHHHHTTTCSSGGGGGS-----GGGHHHHHH------HHHHHHHHHHTTHHH
T ss_pred HHHHHh-----------HHHHhCCCeeCCHHHHHHcCCCHHHHhc-----ccCCHHHHH------HHHHHHHHHHHHHHH
Confidence 877776 6788899999998543332111111111 111111111 234555677777888
Q ss_pred HHHHhccCCCC
Q 020685 288 AAAAIDSLPEN 298 (322)
Q Consensus 288 a~~~l~~lp~~ 298 (322)
|...+..+|..
T Consensus 246 a~~~~~~L~~~ 256 (343)
T 3vj8_A 246 VITYLSRLRNQ 256 (343)
T ss_dssp HHHHHHTCCCH
T ss_pred HHHHHHhCCcc
Confidence 88888877664
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=96.18 E-value=0.68 Score=41.62 Aligned_cols=134 Identities=12% Similarity=0.019 Sum_probs=86.4
Q ss_pred HHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccC
Q 020685 136 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 215 (322)
Q Consensus 136 ~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~ 215 (322)
+..+..|...|+... ...|++++..-+++-.|+...+.+.+- +..+.+ .....+.++|.|+|+.|=+.|+
T Consensus 110 ~~~li~g~~~Dl~~~--~~~t~~dL~~Yc~~vAg~VG~l~~~l~---g~~~~~---~~~~~A~~lG~AlQltNilRDv-- 179 (293)
T 3acx_A 110 FYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPIL---SDHETH---QTYDVARRLGESLQLINILRDV-- 179 (293)
T ss_dssp HHHHHHHHHHHTTCC--CCSSHHHHHHHHHHHTHHHHHHHHHHH---CSSCCH---HHHHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhhHHHHHHHHHHh---CCCCcH---HHHHHHHHHHHHHHHHHHHHHH--
Confidence 466778888888643 245888888777777666666655532 333311 3557889999999999876666
Q ss_pred CccccCCchhhhhhcCCCCHHHHHHHhhChHHHHHHhcccCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 020685 216 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 295 (322)
Q Consensus 216 ~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~~~l~~l 295 (322)
+.|...|++-||.=..-+..-...++.... .++ .+.. .+......++.+..+|...+..+
T Consensus 180 ---------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~-~~~-~~~~---------~~~~l~~~A~~~~~~a~~~~~~l 239 (293)
T 3acx_A 180 ---------GEDFENERIYFSKQRLKQYEVDIAEVYQNG-VNN-HYID---------LWEYYAAIAEKDFRDVMDQIKVF 239 (293)
T ss_dssp ---------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHC-CCH-HHHH---------HHHHHHHHHHHHHHHHHHTGGGS
T ss_pred ---------HHHHhCCcEEeCHHHHHHcCCCHHHhcccC-CCH-HHHH---------HHHHHHHHHHHHHHHHHHhHHhC
Confidence 578899999999855433322222233221 222 2222 23455577888888998888888
Q ss_pred CCCC
Q 020685 296 PENN 299 (322)
Q Consensus 296 p~~~ 299 (322)
|...
T Consensus 240 p~~~ 243 (293)
T 3acx_A 240 SIEA 243 (293)
T ss_dssp CTTH
T ss_pred CHHH
Confidence 8743
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=95.06 E-value=0.45 Score=44.49 Aligned_cols=105 Identities=8% Similarity=-0.046 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhhHHHHHH-HHHHHHHcCCCHHHHH--HHHHHHHHH
Q 020685 125 NTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNS-CKAIALLAGQTAEVAI--LAFDYGKNL 200 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~-~~~ga~la~~~~~~~~--~l~~~g~~l 200 (322)
.+.....+.+.+..++.+-..+..|.. +..++.++|+++-..-+|..+.+. +..+. =-..+++..+ .+.++-...
T Consensus 175 ~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~~~~l~~~~ 253 (382)
T 3kb9_A 175 PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSS-GCELPDAVRKHPAYRRAALLS 253 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHc-CCCCCHHHHhChHHHHHHHHH
Confidence 466778888888999999998887753 336899999998555455433222 22221 1123444322 466677888
Q ss_pred HHHhchhhccccccCCccccCCchhhhhhcCCC-CHHHHHHH
Q 020685 201 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAM 241 (322)
Q Consensus 201 G~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al 241 (322)
+...-+.||+..|--+ ..+|.. +.+.++.-
T Consensus 254 ~~i~rL~NDi~S~~kE-----------~~~G~~~N~V~~~m~ 284 (382)
T 3kb9_A 254 QEFAAWYNDLCSLPKE-----------IAGDEVHNLGISLIT 284 (382)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----------HhcCCcccHHHHHHH
Confidence 8889999999998532 233443 67776643
No 50
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=85.65 E-value=15 Score=34.75 Aligned_cols=112 Identities=10% Similarity=-0.019 Sum_probs=68.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHc-CCCHHHHH--HH
Q 020685 118 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-GQTAEVAI--LA 193 (322)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la-~~~~~~~~--~l 193 (322)
..+.........+.+.+.+..++.+-..+..|.. +..+++++|+++ +..||....+.+ +....+ ..+++..+ .+
T Consensus 246 ~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~ 323 (433)
T 3v1v_A 246 GYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI-TDTVGGYELPADLHARPDM 323 (433)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG-HHHHHTCCCCHHHHTSHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH-HHHHcCCCCCHHHHhCchH
Confidence 3333334566677788888888888888887753 336899999996 456654422211 111122 12344332 45
Q ss_pred HHHHHHHHHHhchhhccccccCCccccCCchhhhhhc-CCC-CHHHHHHHh
Q 020685 194 FDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH-GII-TAPILFAME 242 (322)
Q Consensus 194 ~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~e-gk~-Tlp~l~al~ 242 (322)
.++-...+...-+.||+..|--+. .+ |.. +.+.+|..+
T Consensus 324 ~~L~~~~~~i~rL~NDI~Sy~kE~-----------~~gg~~~N~V~~~mke 363 (433)
T 3v1v_A 324 QRVIALAGNATTIVNDLYSYTKEL-----------NSPGRHLNLPVVIAER 363 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHT-----------TSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHH-----------hcCCCCCcHHHHHHHh
Confidence 667788888889999999985332 22 344 777777543
No 51
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=81.87 E-value=28 Score=31.09 Aligned_cols=113 Identities=10% Similarity=-0.064 Sum_probs=66.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCC-CCC-CHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHH--HHH
Q 020685 119 ALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD-QRC-SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI--LAF 194 (322)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~-~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~--~l~ 194 (322)
.+.....+.....+.+.+..++.+-..+..|... ..+ |.++|+++-..-.|..+.+.+..-+.=-..+++..+ .+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~ 205 (337)
T 1ps1_A 126 RTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMS 205 (337)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHH
Confidence 3333345667778888888899998888877543 357 899999875544444432222111111122343322 455
Q ss_pred HHHHHHHHHhchhhccccccCCccccCCchhhhhhcCC-CCHHHHHHHh
Q 020685 195 DYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI-ITAPILFAME 242 (322)
Q Consensus 195 ~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk-~Tlp~l~al~ 242 (322)
.+-...+...-+.||+..|--+ ..+|. .+.+.++.-+
T Consensus 206 ~l~~~~~~i~rL~NDl~S~~kE-----------~~~G~~~n~V~~~m~~ 243 (337)
T 1ps1_A 206 AMLQIAVDVNLLLNDIASLEKE-----------EARGEQNNMVMILRRE 243 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH-----------HHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH-----------HhcCCcchHHHHHHHH
Confidence 6777888888999999998532 23343 4666666543
No 52
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=81.62 E-value=1.9 Score=34.14 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhh
Q 020685 105 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 147 (322)
Q Consensus 105 Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~ 147 (322)
-|++|||+-+..+.+|+.......++.+++++..+.+.-..-+
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~ 114 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRA 114 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3599999999999999988888999999999988877665444
No 53
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=80.78 E-value=25 Score=34.44 Aligned_cols=102 Identities=10% Similarity=0.064 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhhHHHHH-HHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Q 020685 128 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISN-SCKAIALLAG-QTAEVAILA---FDYGKNLG 201 (322)
Q Consensus 128 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~-~~~~ga~la~-~~~~~~~~l---~~~g~~lG 201 (322)
++..+.+++..++.+-..+..|.. +..+|.++|++...--+|....+ .+.++ ++. .+.+..+.+ -++-+..+
T Consensus 365 ~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~--mg~~lt~e~~e~~~~~p~i~~~~~ 442 (555)
T 3n0f_A 365 ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFA--VVQNIKKEEIENLQKYHDIISRPS 442 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHH--HCSSCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHh--cCCCCCHHHHHhcccchHHHHHHH
Confidence 456666778888888888888854 34689999999765555543222 12111 122 356654443 35677888
Q ss_pred HHhchhhccccccCCccccCCchhhhhhcCCC-CHHHHHHHh
Q 020685 202 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 242 (322)
Q Consensus 202 ~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 242 (322)
...-+.||+..+-.+ ..+|.. +...+|..+
T Consensus 443 ~i~RL~NDi~S~~~E-----------~~rG~vas~V~cYMke 473 (555)
T 3n0f_A 443 HIFRLCNDLASASAE-----------IARGETANSVSCYMRT 473 (555)
T ss_dssp HHHHHHHHHHHHHHH-----------HTTTCCCSHHHHHHHH
T ss_pred HHHHHhccchhhhhh-----------hhcCCcchHHHHHHHH
Confidence 888999999988532 233444 666666443
No 54
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=80.06 E-value=26 Score=34.31 Aligned_cols=103 Identities=13% Similarity=0.057 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHc-C--CCHHHHHHH---HHHHH
Q 020685 126 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G--QTAEVAILA---FDYGK 198 (322)
Q Consensus 126 ~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la-~--~~~~~~~~l---~~~g~ 198 (322)
..++..+.+.+..++.+-..+..|.. +..+|.++|++...--+|...... .+.++ | .+.+..+.+ .++-+
T Consensus 365 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~---~~~~~mg~~lt~e~~e~~~~~p~i~~ 441 (554)
T 3g4d_A 365 QYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI---TSFVGMGDIVTPETFKWAASDPKIIQ 441 (554)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHH---HHHHTSCTTSCHHHHHHHHTCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHH---HHHHhcCCCCCHHHHHhccccHHHHH
Confidence 35677788888999999999988854 346899999987655555432221 11222 2 356655543 36778
Q ss_pred HHHHHhchhhccccccCCccccCCchhhhhhcCCC-CHHHHHHHh
Q 020685 199 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 242 (322)
Q Consensus 199 ~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 242 (322)
..+...-+.||+..+-.+. .+|.. +...+|..+
T Consensus 442 ~~~~I~RL~NDI~S~k~E~-----------~rG~van~V~cYMke 475 (554)
T 3g4d_A 442 ASTIICRFMDDVAEHKFKH-----------RREDDCSAIECYMEE 475 (554)
T ss_dssp HHHHHHHHHHHHHHHCC-----------------CCCHHHHHHHH
T ss_pred HHHHHHHHhcccchhhhhh-----------ccCCccHHHHHHHHh
Confidence 8899999999999985432 23444 666666543
No 55
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=77.56 E-value=33 Score=33.45 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHc-C-CCHHHHHHH---HHHHHH
Q 020685 126 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G-QTAEVAILA---FDYGKN 199 (322)
Q Consensus 126 ~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la-~-~~~~~~~~l---~~~g~~ 199 (322)
..++..+.+.+..++.+-..+..|.. +..||.++|++...--+|...-.+.. .++ . .+.+..+.+ -++-+.
T Consensus 361 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i~~~ 437 (550)
T 3m00_A 361 SHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKILEA 437 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHHHHH
Confidence 34667777888889999999988854 34689999999765555544222111 232 2 455554432 366778
Q ss_pred HHHHhchhhccccccCCccccCCchhhhhhcCCC-CHHHHHHH
Q 020685 200 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAM 241 (322)
Q Consensus 200 lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al 241 (322)
.+...-+.||+..+-.+ ..+|.. +...+|..
T Consensus 438 ~~~I~RL~NDI~S~k~E-----------~~rG~vas~V~cYMk 469 (550)
T 3m00_A 438 SVIICRVIDDTATYEVE-----------KSRGQIATGIECCMR 469 (550)
T ss_dssp HHHHHHHHHHHHSHHHH-----------HHTTCTTSHHHHHHH
T ss_pred HhhhheeeccchhHHHH-----------HhcCCcccHHHHHHH
Confidence 88899999999987432 344555 66666644
No 56
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=69.61 E-value=67 Score=31.20 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccCCC-CCCHHHHHHHHhhhhhHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Q 020685 128 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAIL---AFDYGKNLGL 202 (322)
Q Consensus 128 ~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~---l~~~g~~lG~ 202 (322)
++..+.+++..++.+-..+..|.... .+|.++|++.-..-+|...-+.... ..++. .+.+..+. ..++-+..++
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~-~~~g~~~t~e~~e~~~~~p~i~~~~~~ 434 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIF-FRVTDSFTKETVDSLYKYHDLVRWSSF 434 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHH-HHHSSCCCHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHH-HHcCCCCCHHHHHHhcccHHHHHHHHH
Confidence 45666777788888888887775433 5899999987554444332221111 11222 34554433 2356667777
Q ss_pred HhchhhccccccCCccccCCchhhhhhcCCC-CHHHHHHHh
Q 020685 203 AYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 242 (322)
Q Consensus 203 afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 242 (322)
..-+.||+..+-.+ ...|.. +...+|.-+
T Consensus 435 i~RL~NDi~S~~~E-----------~~rG~~~n~V~cyMke 464 (543)
T 2ong_A 435 VLRLADDLGTSVEE-----------VSRGDVPKSLQCYMSD 464 (543)
T ss_dssp HHHHHHHHHSSHHH-----------HHTSCCCCHHHHHHHH
T ss_pred HHHHhcccchhhhc-----------cccCCccHHHHHHHHH
Confidence 77899998887432 234444 676676443
No 57
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=66.00 E-value=9.7 Score=34.29 Aligned_cols=79 Identities=27% Similarity=0.253 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC-HHHHH
Q 020685 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-TEVVT 130 (322)
Q Consensus 64 ~la~avEllh~asLihDDI~D------------~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~-~~~~~ 130 (322)
.+...-+.+=.|+=|.|||.| .++.|.||+|+-..+|.. .|--...-+...|...|..++. ...+.
T Consensus 207 ~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~-~a~~~a~~~~~~A~~~L~~l~~~~~~L~ 285 (304)
T 3lsn_A 207 ALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLA-AAKEYALELRDQALHALRPFDAAAEPLR 285 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHH-HHHHHHHHHHHHHHHHTTTSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 344445566778899999977 578899999999999999 9999999999999999888763 23333
Q ss_pred HHHHH-HHHHHhhh
Q 020685 131 LLATV-VEHLVTGE 143 (322)
Q Consensus 131 ~~~~~-~~~~~~Gq 143 (322)
.+++. +.+..+|.
T Consensus 286 ~l~~~~~~R~~~~~ 299 (304)
T 3lsn_A 286 ELARYIVERRSEGH 299 (304)
T ss_dssp HHHHHHHC------
T ss_pred HHHHHHHHhccccc
Confidence 33332 33444443
No 58
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=65.98 E-value=26 Score=31.80 Aligned_cols=45 Identities=27% Similarity=0.254 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHH
Q 020685 184 GQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240 (322)
Q Consensus 184 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~a 240 (322)
|.+.+....+...-+.+=.++-|.||+.|= +|+|.|++|+-..|-
T Consensus 63 g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 63 GAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFN 107 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcC
Confidence 444444445566677888899999999662 567888888887774
No 59
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=65.90 E-value=16 Score=33.22 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC-HHHHH
Q 020685 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-TEVVT 130 (322)
Q Consensus 64 ~la~avEllh~asLihDDI~D------------~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~-~~~~~ 130 (322)
.+...-+.+=.|+=|.|||.| .++.|.||+|+-..+|.. .|--...-+..+|...|..++. ...+.
T Consensus 235 ~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~-~a~~~a~~~~~~A~~~L~~l~~~~~~L~ 313 (324)
T 3uca_A 235 KLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLE-ECKKKCVNITEECIEILSSIKGNTEPLK 313 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHH-HHHHHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 344445566778999999976 356788999999999999 8988888999999999988753 33444
Q ss_pred HHH
Q 020685 131 LLA 133 (322)
Q Consensus 131 ~~~ 133 (322)
.+.
T Consensus 314 ~la 316 (324)
T 3uca_A 314 VLT 316 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 60
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=64.76 E-value=49 Score=29.47 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=30.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 183 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 183 a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
.+.+++....+...-+.+=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 40 ~~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 84 (301)
T 2q80_A 40 LKVPEDKLQIIIEVTEMLHNASLLIDDIEDN------------SKLRRGFPVAHSIY 84 (301)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHccccCC------------CCCCCCCcchhhcc
Confidence 3445554455666667778888999999763 45677777776555
No 61
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=63.97 E-value=23 Score=32.30 Aligned_cols=50 Identities=32% Similarity=0.247 Sum_probs=29.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 178 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 178 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
+++.+.|.+.+....+...-+.+=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 63 ~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 63 AAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE------------SRQRRGRPTANLLW 112 (341)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhc
Confidence 334444444444445666667788899999999662 45777888876654
No 62
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=61.53 E-value=17 Score=32.67 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhhcC------------CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC
Q 020685 65 IAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 124 (322)
Q Consensus 65 la~avEllh~asLihDDI~D------------~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~ 124 (322)
+...-+.+=.|+=|.||+.| .++.+.||+|+-..+|.. .|-....-+..+|...|..++
T Consensus 214 l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~-~a~~~a~~~~~~A~~~L~~l~ 284 (302)
T 3p8r_A 214 LDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLE-GAQQKAHTLLQEALLALEAIP 284 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHH-HHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 44445566678899999976 346788899999999998 888888888999998888875
No 63
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=61.01 E-value=17 Score=32.80 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC-HHHHH
Q 020685 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-TEVVT 130 (322)
Q Consensus 64 ~la~avEllh~asLihDDI~D------------~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~-~~~~~ 130 (322)
.+...-+.+=.|+=|.|||.| .++.|.||+|+-..+|.. .|--...-+...|...|..++. ...+.
T Consensus 214 ~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~-~a~~~a~~~~~~A~~~L~~l~~~~~~L~ 292 (313)
T 3lom_A 214 ALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQ-QLEEEIAVHYQIAMDSLRLFGSKAAALI 292 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHH-HHHHHHHHHHHHHHHTTTTTGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCccHHHHH
Confidence 344445566678899999966 356789999999999999 9988888889999888877653 33444
Q ss_pred HHHH
Q 020685 131 LLAT 134 (322)
Q Consensus 131 ~~~~ 134 (322)
.+++
T Consensus 293 ~la~ 296 (313)
T 3lom_A 293 ELTK 296 (313)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 64
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=58.52 E-value=39 Score=30.03 Aligned_cols=42 Identities=29% Similarity=0.287 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 186 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 186 ~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
+.+....+...-+.+=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD~------------s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMDQ------------HDQRRGIKTPRAMY 107 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSBSSSSBCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCCC------------CCCCCCCCcHHHhc
Confidence 3333445566667788899999999652 45677888877666
No 65
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=57.97 E-value=23 Score=32.51 Aligned_cols=50 Identities=20% Similarity=0.040 Sum_probs=32.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 178 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 178 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
+++...|.+.+....+...-+.+=.++-|.||+.|- +|+|.|++|+-..|
T Consensus 64 l~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 64 LSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhc
Confidence 344444555544445566667777889999999773 45677777776655
No 66
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=57.25 E-value=20 Score=32.36 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC
Q 020685 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 124 (322)
Q Consensus 64 ~la~avEllh~asLihDDI~D------------~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~ 124 (322)
.+...-+.+=.|+=|.|||.| .++.|.||+|+-..+|.. .|--...-+..+|...|..++
T Consensus 206 ~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle-~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 206 KLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLD-GAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHH-HHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhCc
Confidence 344445566678999999977 456788999999999998 888888888899988888765
No 67
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=57.02 E-value=48 Score=32.33 Aligned_cols=102 Identities=17% Similarity=0.036 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHhhhhhHHHHHHHHHHHHH--cC-CCHHH-HHH---HHHHHHH
Q 020685 128 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALL--AG-QTAEV-AIL---AFDYGKN 199 (322)
Q Consensus 128 ~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~~~~~y~~~~~~KTa~l~~~~~~~ga~l--a~-~~~~~-~~~---l~~~g~~ 199 (322)
++..+.+++..++.+-..+..|... ..+|.++|++.-..-+|...-+ +.+.+ +. .+.+. .+. ..++-+.
T Consensus 362 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~---~~~~~~~g~~lt~e~~~e~~~~~p~i~~~ 438 (549)
T 1n1b_A 362 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII---SPTYFTFANASHDTAVIDSLYQYHDILCL 438 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH---HHHHTTSTTCCCCHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH---HHHHHHcCCCCcHHHHHhhhcccHHHHHH
Confidence 4455667777788888878777433 3589999998754444433211 11122 11 23444 332 3456777
Q ss_pred HHHHhchhhccccccCCccccCCchhhhhhcCCC-CHHHHHHHhh
Q 020685 200 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAMEE 243 (322)
Q Consensus 200 lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~~ 243 (322)
.++..-+.||+..+-.+. ..|.. +...+|.-+.
T Consensus 439 ~~~i~RL~NDi~S~~~E~-----------~rG~v~n~V~cyMke~ 472 (549)
T 1n1b_A 439 AGIILRLPDDLGTSYFEL-----------ARGDVPKTIQCYMKET 472 (549)
T ss_dssp HHHHHHHHHHHC--------------------CCCCHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhh-----------ccCCccHHHHHHHHHc
Confidence 888889999998885332 23444 7777775443
No 68
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=55.00 E-value=67 Score=32.66 Aligned_cols=102 Identities=7% Similarity=0.026 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhhHH-HHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Q 020685 128 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILA---FDYGKNLG 201 (322)
Q Consensus 128 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG 201 (322)
++..+.+++..++.+-..+..|.. +..+|.++|++....-+|.. +.+++..+ ++. .+.+..+.. .++-+..+
T Consensus 567 ~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~ 644 (764)
T 3p5p_A 567 MLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVS 644 (764)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHH
Confidence 456666777888888888887743 33689999998755545443 22222222 122 344444444 45677888
Q ss_pred HHhchhhccccccCCccccCCchhhhhhcCCC-CHHHHHHHh
Q 020685 202 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 242 (322)
Q Consensus 202 ~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 242 (322)
...-+.||+..+-.+ ..+|.. +...+|..+
T Consensus 645 ~I~RL~NDi~S~k~E-----------~~rG~~as~V~cYMke 675 (764)
T 3p5p_A 645 LSWRLTNDTKTYQAE-----------KARGQQASGIACYMKD 675 (764)
T ss_dssp HHHHHHHHHHHHHHH-----------HTTTCCCSHHHHHHHH
T ss_pred HHHHhhhcccchHHH-----------HhcCCcchHHHHHHHh
Confidence 888899999988532 234444 676676443
No 69
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=54.08 E-value=23 Score=31.72 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC------------CCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcC
Q 020685 64 CIAEITEMIHVASLLHDDVLDD------------ADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL 123 (322)
Q Consensus 64 ~la~avEllh~asLihDDI~D~------------~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~ 123 (322)
.+...-+.+=.|+=|.|||.|- ++.+.||+|+-..+|.. .|--...-+...|...|..+
T Consensus 210 ~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~-~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 210 LLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIA-GAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 3444455666788999999763 56788888988888888 88877777888887777655
No 70
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=53.72 E-value=50 Score=33.88 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhhHHH--HHHHHHHHHHcC-CCHHHHHHHH-----HHHH
Q 020685 128 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAG-QTAEVAILAF-----DYGK 198 (322)
Q Consensus 128 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~--~~~~~~ga~la~-~~~~~~~~l~-----~~g~ 198 (322)
++..+.+++..++.+-..+..|.. +..+|.++|++....-+|... .+++..+ ++. .+.+..+... ++-+
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~ 703 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTE 703 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHH
Confidence 455666777888888888887753 336899999987554444422 2222222 122 3566655554 6677
Q ss_pred HHHHHhchhhccccccCCccccCCchhhhhhcCCC-CHHHHHHHh
Q 020685 199 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 242 (322)
Q Consensus 199 ~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 242 (322)
..+...-+.||+..+-.+. .+|.. +..-+|..+
T Consensus 704 ~~~~I~RL~NDi~S~k~E~-----------~rG~~assV~cYMke 737 (817)
T 3sdr_A 704 LNSLISRLADDTKTYKAEK-----------ARGELASSIECYMKD 737 (817)
T ss_dssp HHHHHHHHHHHHHSSCC-----------------CCCHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHH-----------hcCCcchHHHHHHHh
Confidence 8888888999999885432 23444 666666443
No 71
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=52.59 E-value=21 Score=32.01 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhhhcC------------CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC
Q 020685 65 IAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 124 (322)
Q Consensus 65 la~avEllh~asLihDDI~D------------~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~ 124 (322)
+...-+.+=.|+=|.|||.| .++.+.||+|+-..+|.. .|.-...-+..+|...|..++
T Consensus 203 l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~-~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 203 LESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKD-GAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHH-HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 44445566678899999977 567888999998888888 888888888888888888774
No 72
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=52.55 E-value=31 Score=31.28 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhhhcC------------CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCCC
Q 020685 65 IAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 125 (322)
Q Consensus 65 la~avEllh~asLihDDI~D------------~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~~ 125 (322)
+..--+.+=.|+=|.|||.| .++.|.||+|+-..+|.. .|--...-+..+|...|..++.
T Consensus 214 l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle-~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 214 LDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLS-GAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHH-HHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCc
Confidence 44445566678899999976 346788999999999999 9998888899999888887763
No 73
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=51.75 E-value=33 Score=30.65 Aligned_cols=55 Identities=24% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhhcC------------CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC
Q 020685 69 TEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 124 (322)
Q Consensus 69 vEllh~asLihDDI~D------------~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~ 124 (322)
-+.|=.|+=|.|||.| .++.|.||+|+-..+|.. .|--...-+...|...|..++
T Consensus 205 g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~-~a~~~~~~~~~~A~~~L~~~~ 271 (297)
T 3m0g_A 205 ATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLA-GAKSRAADLVAEAEAALAPYG 271 (297)
T ss_dssp HHHHHHHHHHHTTCC---------------------CCHHHHHCSS-HHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 3455668889999977 356788999999999999 999999999999998888765
No 74
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=51.58 E-value=1.5e+02 Score=27.28 Aligned_cols=150 Identities=12% Similarity=0.013 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCCcchhhhhc--CCchh--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhh
Q 020685 71 MIHVASLLHDDVLDDADTRRGIGSLNFVM--GNKVL--AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQ 146 (322)
Q Consensus 71 llh~asLihDDI~D~~~~RRG~pt~~~~~--G~~~~--Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d 146 (322)
...++..+.||+.|++. ......+..+ |.. . .++. .+...+.-+...-.+.....|.+.+.+...|...+
T Consensus 91 d~~~~~F~lDD~~d~~~--~~l~~~~~~ll~G~~-~~~Pl~~---al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~E 164 (374)
T 1yyq_A 91 IHYTYTLVLDDSKDDPY--PTMVNYFDDLQAGRE-QAHPWWA---LVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIE 164 (374)
T ss_dssp HHHHHHHHHTTCCSCSH--HHHTTHHHHHHHTCC-CSSHHHH---HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccCcH--HHHHHHHHHHhcCCC-CCChHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888999998754 1123333322 332 1 1111 12222333344445666677777777777888777
Q ss_pred hcccCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHHHhchhhccccccCCccc
Q 020685 147 MTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QT------AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 219 (322)
Q Consensus 147 ~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~------~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~ 219 (322)
..+ ....++.++|..+.+.+||.. -++ .+.++.. .. ++....+..+...+ =..||++.|.-+...
T Consensus 165 a~n-~~~~p~~~~Y~~~rR~~sG~~--E~~-~~~~~P~~~~~e~~~~~~~~~~i~am~~~i----~~~NDIlSf~KE~~~ 236 (374)
T 1yyq_A 165 QYN-FGGFPGSHDYPQFLRRMNGLG--HCV-GASLWPKEQFNERSLFLEITSAIAQMENWM----VWVNDLMSFYKEFDD 236 (374)
T ss_dssp TTC-CCCCTTCTTHHHHHHHHHHCH--HHH-HHTTCCTTTCCTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTC
T ss_pred Hhc-cCCCCCHHHHHHHHHhhccHH--HHH-HHhhccccccchhhcchhHHHHHHHHHHHH----Hhhhhhhccchhhhc
Confidence 554 444567888999889999974 111 1112211 11 23444444444433 346888888533211
Q ss_pred cCCchhhhhhcCCCCHHHHHHHhh
Q 020685 220 LGKGSLSDIRHGIITAPILFAMEE 243 (322)
Q Consensus 220 ~GK~~~~Dl~egk~Tlp~l~al~~ 243 (322)
.| ...+++.+++..+
T Consensus 237 ~G---------d~~NlV~vl~~~~ 251 (374)
T 1yyq_A 237 ER---------DQISLVKNYVVSD 251 (374)
T ss_dssp SS---------CCCCHHHHHHHHH
T ss_pred cC---------CccchhhhehhcC
Confidence 01 1357888876655
No 75
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=51.50 E-value=75 Score=28.04 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=31.4
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhchhhcc--ccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 182 LAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 182 la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
..|.+++....+...-+.+=.+.-|.||+ .|= +|+|.|++|+-..|
T Consensus 60 ~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~------------s~~RRG~pt~h~~~ 107 (284)
T 2ftz_A 60 DLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN------------ADFRRGXPSCHRTY 107 (284)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC------------CCCCCCCccHHhhc
Confidence 33455554445666667777888999999 873 45677888877666
No 76
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=49.96 E-value=26 Score=31.95 Aligned_cols=60 Identities=28% Similarity=0.267 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcCC
Q 020685 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 124 (322)
Q Consensus 64 ~la~avEllh~asLihDDI~D------------~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~~ 124 (322)
.+...-+.+=.|+=|.|||.| .++.+.||+|+-..+|.. .|.....-+..+|...|..++
T Consensus 246 ~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le-~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 246 RLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEA-WAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHH-HHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCc
Confidence 344445566778899999976 356778888988888888 888888888888887777664
No 77
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=49.67 E-value=47 Score=30.06 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=32.4
Q ss_pred HcC-CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 182 LAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 182 la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
+++ .+.+....+...-+.+=.++=|.||+.|= +|+|.|++|+-..|
T Consensus 69 ~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 115 (334)
T 3pko_A 69 FGNAATPAQLQAGAAAIEILHVGTLIHDDVIDD------------SPTRRGVRTIQMTY 115 (334)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhCccCCC------------CCCcCCCccHHHHc
Confidence 344 36665556666777888899999999762 45677888876655
No 78
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=47.19 E-value=42 Score=30.19 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=29.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 179 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 179 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
++...|.+.+....+...-+.+=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 55 SGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDN------------SDMRRGNTSVHIAF 103 (325)
T ss_dssp HHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHT
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCCCccccc
Confidence 33333444333344555666777788999999772 34666777765544
No 79
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=47.09 E-value=49 Score=29.67 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhhhcC------------CCCCCCCcchhhhhcCCchhHHHHHHHHHHHHHHHHHcC
Q 020685 65 IAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL 123 (322)
Q Consensus 65 la~avEllh~asLihDDI~D------------~~~~RRG~pt~~~~~G~~~~Ail~gd~L~~~a~~~l~~~ 123 (322)
+...-+.+=.|+=|.|||.| .++.+.||+|+-..+|.. .|--...-++..|...+..+
T Consensus 210 l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~-~a~~~~~~~~~~a~~~l~~~ 279 (309)
T 3pde_A 210 YLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLI-GANQALIDTIHSGQAALQGL 279 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHH-HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHH-HhHHHHHHHHHHHHHHHHHh
Confidence 44445566678899999976 467888999999999988 88877788888888777763
No 80
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=46.36 E-value=52 Score=29.27 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 190 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
...+...-+.+=.++=|.||+.|= +|+|.|++|+-..|
T Consensus 63 ~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 100 (299)
T 1v4e_A 63 AISSLAALELVHLASLLHDDVIDG------------ARFRRGKETINFMY 100 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCC------------CCCCCCCCchhhhc
Confidence 334555666677788899999762 45677777776655
No 81
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=45.00 E-value=94 Score=28.10 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=29.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 183 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 183 a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
.+.+.+....+...-+.+=.++=|.||+.|= +|+|.|++|+-..|
T Consensus 55 ~~~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 99 (340)
T 2e8v_A 55 MNLPKDQLAIVSQIVELLHNSSLLIDDIEDN------------APLRRGQTTSHLIF 99 (340)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHT
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCcchhhcc
Confidence 3455554445566666777788899999662 45677777765544
No 82
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=41.85 E-value=61 Score=28.79 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhhcC------CCCCCCCcchhhhhcC--------CchhHHHHHHHHHHHHHHHHHcCCC
Q 020685 65 IAEITEMIHVASLLHDDVLD------DADTRRGIGSLNFVMG--------NKVLAVLAGDFLLSRACVALASLKN 125 (322)
Q Consensus 65 la~avEllh~asLihDDI~D------~~~~RRG~pt~~~~~G--------~~~~Ail~gd~L~~~a~~~l~~~~~ 125 (322)
+...-+.+=.|+=|.|||.| +.+.+.|++|+-..|+ .. .|.-...-+..+|...|..++.
T Consensus 192 l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le-~a~~~a~~~~~~A~~~L~~lp~ 265 (295)
T 3ipi_A 192 FSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALK-KSIDCVKLHVAAAKETLETFRE 265 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHH-HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence 34444566678899999976 3567788888888887 55 5566666777777777777664
No 83
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=40.75 E-value=59 Score=29.76 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 190 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
...+...-+.+=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 67 ~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 104 (358)
T 4dhd_A 67 ALPAAAIVELIHNYSLIYDDIIDR------------GDVRRGLPTVRKAF 104 (358)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTT------------CCEETTEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCccccC------------CCCcCCCccHHHhc
Confidence 334555667788889999999662 45677888876665
No 84
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=40.23 E-value=81 Score=28.50 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 184 GQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 184 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
|.+++....+...-+.+=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 62 g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 105 (342)
T 1wy0_A 62 GGDPLRAIYPAVAIELIHNYSLVHDDIMDM------------DETRRGKPTVHRIW 105 (342)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCCSTTSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCcccC------------CCCCCCCCcccccc
Confidence 444333344555666777788999999772 45677888876665
No 85
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=39.60 E-value=34 Score=31.21 Aligned_cols=35 Identities=31% Similarity=0.170 Sum_probs=22.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhchhhcccc
Q 020685 178 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 212 (322)
Q Consensus 178 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld 212 (322)
+++.+.|.+.+....+...-+.+=.++-|.||+.|
T Consensus 75 l~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 75 AAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 34444444444344556666778889999999966
No 86
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=38.32 E-value=90 Score=31.85 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhhHHH-HHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Q 020685 128 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLI-SNSCKAIALLAG-QTAEVAILA---FDYGKNLG 201 (322)
Q Consensus 128 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~-~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG 201 (322)
++..+.+++..++.+-..+..|.. +..+|.++|++...--+|... ...+..+. +. .+.+..+.. .++-+..+
T Consensus 598 ~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~--G~~lt~e~~e~~~~~~~l~~~~~ 675 (785)
T 3s9v_A 598 VLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFT--GEVLTDEVLSKIDRESRFLQLMG 675 (785)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCS--SSCCCHHHHTTTSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHc--CCCCCHHHHhcccccHHHHHHHH
Confidence 455566777788888888887743 336899999987554444332 22221111 21 345544433 35667778
Q ss_pred HHhchhhccccccCCccccCCchhhhhhcCCC-CHHHHHHHh
Q 020685 202 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 242 (322)
Q Consensus 202 ~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 242 (322)
...-+.||+..+-.+ ..+|.. +...+|.-+
T Consensus 676 ~I~RL~NDi~S~k~E-----------~~rG~~as~V~cYMke 706 (785)
T 3s9v_A 676 LTGRLVNDTKTYQAE-----------RGQGEVASAIQCYMKD 706 (785)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHSCCCSHHHHHHHH
T ss_pred HHHHHhcccchhhHH-----------HhcCCcchHHHHHHHh
Confidence 888889999987432 234544 666666544
No 87
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=38.25 E-value=1e+02 Score=27.71 Aligned_cols=49 Identities=24% Similarity=0.092 Sum_probs=31.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 179 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 179 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
++...|.+.+....+...-+.+=.++=|.||+.|= +|+|.|++|+-..|
T Consensus 50 ~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~------------s~~RRG~pt~h~~~ 98 (330)
T 1wmw_A 50 SALAHGAPLEAGLEAATALELFQNWVLVHDDIEDG------------SEERRGRPALHRLH 98 (330)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC------------CCCCCCCCcccccc
Confidence 33444555554445666667777889999999762 34667777765543
No 88
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=37.23 E-value=2e+02 Score=24.71 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCC
Q 020685 153 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 216 (322)
Q Consensus 153 ~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 216 (322)
..++.++|+.+-..-+|..+...+..-++=-..+++..+.+..+-...+...-+.||+..|--+
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE 213 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKE 213 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3689999999755555544332222111112246776667888899999999999999999643
No 89
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=37.04 E-value=95 Score=27.40 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=30.9
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHHH
Q 020685 180 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 240 (322)
Q Consensus 180 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~a 240 (322)
+...|.+++....+...-+.+=.++=|.||+.|= +|+|.|++|+-..|-
T Consensus 61 ~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~------------s~~RRG~pt~h~~~G 109 (289)
T 2azj_A 61 TVALGGDIKDSYGGALAIEILHSASLALCDIVDL------------DATRRGDKAAWVVYG 109 (289)
T ss_dssp HHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCBSSSSBCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCCCccHHHhcC
Confidence 3333444433334555566677788899999652 457778888776663
No 90
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=36.43 E-value=62 Score=29.67 Aligned_cols=49 Identities=24% Similarity=0.192 Sum_probs=24.5
Q ss_pred HHHHcC-CCHHHHHHHHHHHHHHHHHhchhhccccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 179 IALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 179 ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
++.+.+ .+.+....+...-+.+=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 85 ~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~ 134 (360)
T 3lmd_A 85 ASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE------------ASMRRGVPSANARW 134 (360)
T ss_dssp HHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC------------CCCCCCCCcHHhhc
Confidence 334444 34444444555667778889999999662 45777888776666
No 91
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=34.92 E-value=1.3e+02 Score=29.29 Aligned_cols=86 Identities=15% Similarity=0.061 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccCCC-CCCHHHHHHHHhhhhhHHHHH-HHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Q 020685 128 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISN-SCKAIALLAG-QTAEVAIL---AFDYGKNLG 201 (322)
Q Consensus 128 ~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~y~~~~~~KTa~l~~~-~~~~ga~la~-~~~~~~~~---l~~~g~~lG 201 (322)
++..+.+++..++.+-..+..|.... .+|.++|++.-..-+|...-+ ....+ ++. .+.+..+. .-++-+..+
T Consensus 383 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~--~g~~lt~e~~e~l~~~p~i~~~~~ 460 (569)
T 2j5c_A 383 STPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFR--LTDSIEEEAAESMHKYHDIVRASC 460 (569)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHH--SCSSCCHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH--cCCCCCHHHHHHhhccHHHHHHHH
Confidence 45666777788888888887775433 589999998755444433221 11111 122 34554333 235666777
Q ss_pred HHhchhhccccccC
Q 020685 202 LAYQLIDDVLDFTG 215 (322)
Q Consensus 202 ~afQi~DD~ld~~~ 215 (322)
+..-+.||+..+-.
T Consensus 461 ~i~RL~NDI~S~~~ 474 (569)
T 2j5c_A 461 TILRLADDMGTSLD 474 (569)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHhcccchhhh
Confidence 77789999988854
No 92
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=32.42 E-value=89 Score=27.95 Aligned_cols=40 Identities=15% Similarity=-0.003 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhchhhcc--ccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 188 EVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 188 ~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
+....+...-+.+=.++-|.||+ .|= +|+|.|++|+-..|
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD~------------s~~RRG~pt~h~~~ 115 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMDN------------AALRRNHPTLHAKY 115 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccCC------------CcccCCCCchhhhc
Confidence 44445555566677788999999 662 45677777776655
No 93
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=31.63 E-value=1.7e+02 Score=25.79 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=32.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhchhhcc--ccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 179 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 179 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
++...|.+.+....+...-+.+=.+.=|.||+ .|= +|+|.|++|+-..|
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~------------s~~RRG~pt~h~~~ 105 (299)
T 1rqj_A 55 TGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDD------------DDLRRGLPTCHVKF 105 (299)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CCEETTEECHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhcC------------CCCCCCCCChhhhc
Confidence 33444555554445555666777788899999 873 45677888876665
No 94
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=29.54 E-value=2.1e+02 Score=25.19 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhhcc--ccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 187 AEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 187 ~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
.+....+...-+.+=.++-|.||+ .|= +|+|.|++|+-..|
T Consensus 59 ~~~~~~~A~aiEliH~aSLIHDDIp~mD~------------s~~RRG~pt~h~~~ 101 (291)
T 3npk_A 59 LNQALDVALALEFIHTYSLIHDDLPAMDN------------ADFRRGIPTLHKSY 101 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcccccC------------CCCCCCCCchhhhc
Confidence 344445566667788899999999 552 45677777776655
No 95
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=24.94 E-value=3.4e+02 Score=23.69 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhchhhcc--ccccCCccccCCchhhhhhcCCCCHHHHH
Q 020685 181 LLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 239 (322)
Q Consensus 181 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 239 (322)
.+.|.+++....+...-+.+=.+.-|.||+ .|= +|+|.|++|+-..|
T Consensus 65 ~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD~------------s~~RRG~pt~h~~~ 113 (293)
T 2j1p_A 65 ELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMDN------------DDLRRGKPTNHKVY 113 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccC------------CCCCCCCCchhhhc
Confidence 333455554444555666677788899998 662 45778888887666
No 96
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=22.13 E-value=3.8e+02 Score=23.13 Aligned_cols=63 Identities=5% Similarity=0.056 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhchhhccccccC
Q 020685 153 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 215 (322)
Q Consensus 153 ~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~ 215 (322)
..++.++|+.+-..-+|..+...+..-++=-..+++..+....+-...+...-+.||+..|--
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~k 226 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEK 226 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence 368999999886666665433322211111224677766788888999999999999999853
No 97
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=21.74 E-value=1.1e+02 Score=21.51 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=21.2
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHH-HHHHHHHHhcc
Q 020685 286 NLAAAAIDSLPENNDEDVTKSRRAL-LDLTHRVITRN 321 (322)
Q Consensus 286 ~~a~~~l~~lp~~~~~~~~~~~~~L-~~l~~~~~~R~ 321 (322)
..|+..|..+|... .+ .+++.++++|.
T Consensus 50 pdCk~ilk~l~~~~---------~~~~e~ik~~~~~~ 77 (77)
T 3g21_A 50 PDIQQLIRTAPSTL---------TTPGEIIKYVLDRQ 77 (77)
T ss_dssp HHHHHHHTTSCTTC---------CSHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCC---------CCHHHHHHHHHccC
Confidence 45688888998776 35 88999998874
No 98
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=20.18 E-value=1.9e+02 Score=25.15 Aligned_cols=33 Identities=15% Similarity=-0.008 Sum_probs=22.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhchhhccc
Q 020685 179 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 211 (322)
Q Consensus 179 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~l 211 (322)
++.+.|.+.+....+...-+.+=.+.-|.||+.
T Consensus 51 ~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~ 83 (274)
T 3kra_B 51 ACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLP 83 (274)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 334445555544456666677888999999998
Done!