RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020685
(322 letters)
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 117 bits (292), Expect = 3e-31
Identities = 60/312 (19%), Positives = 103/312 (33%), Gaps = 32/312 (10%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L +Y ++ GK+ R + L V + Q I E+
Sbjct: 7 LLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVP-----------------EDKLQIIIEV 47
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEV 128
TEM+H ASLL DD+ D++ RRG + + G + A L V
Sbjct: 48 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAV 107
Query: 129 VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 188
++E + + + Y KT L + + L + +
Sbjct: 108 KLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKED 167
Query: 189 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME---EFP 245
+ LGL +Q+ DD + S K D+ G + P + A+ E
Sbjct: 168 L----KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPEST 223
Query: 246 QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTK 305
Q++ ++ Q E+ + YL + TR + A ID+ N
Sbjct: 224 QVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGN------P 277
Query: 306 SRRALLDLTHRV 317
AL+ ++
Sbjct: 278 ELVALVKHLSKM 289
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 96.2 bits (238), Expect = 1e-23
Identities = 75/329 (22%), Positives = 122/329 (37%), Gaps = 72/329 (21%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
+ +Y +G GKR RP ++ V A
Sbjct: 30 TPVVETMQYGALLG--GKRLRPFLVYATGHMFGVS-----------------TNTLDAPA 70
Query: 67 EITEMIHVASLLHDDVLDDADTRR--GIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 124
E IH SL+HDD+ D G+ + + G A+LAGD L + A L+
Sbjct: 71 AAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEAN-AILAGDALQTLAFSILSDAD 129
Query: 125 NTEV----------VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 174
EV A+ + + G+ + + + + +D + +KT +LI
Sbjct: 130 MPEVSDRDRISMISELASASGIAGMCGGQALDLD-AEGKHVPLDALERIHRHKTGALIRA 188
Query: 175 SCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 233
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G
Sbjct: 189 AVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 248
Query: 234 TAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 293
T P L +E + R+ A + A ++
Sbjct: 249 TYPALLGLE---------------------------------QARKKARDLIDDARQSLK 275
Query: 294 SLPENNDEDVTKSRRALLDLTHRVITRNK 322
L E + + AL L +I RNK
Sbjct: 276 QLAEQSLD-----TSALEALADYIIQRNK 299
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 95.9 bits (237), Expect = 4e-23
Identities = 55/316 (17%), Positives = 102/316 (32%), Gaps = 34/316 (10%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK R ++ L+ + + + ALA + E+ L+ DD+
Sbjct: 51 GKCNRGLTVVAAYRELSGP-GQKDAESLRCALA---------VGWCIELFQAFFLVADDI 100
Query: 83 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA-----------CVALASLKNTEVVTL 131
+D + TRRG G + + FLL + L + T
Sbjct: 101 MDQSLTRRGQLCWYKKEGVGL-DAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTA 159
Query: 132 LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAGQTAEV 189
T + ++ T ++ S + Y YKTA A+ ++ + E
Sbjct: 160 YQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEE 219
Query: 190 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLR 248
A +G +Q+ DD LD G A GK +DI+ + ++ ++ P+ R
Sbjct: 220 HENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVG-TDIQDNKCSWLVVQCLQRVTPEQR 278
Query: 249 TVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 306
++E + + V E ++ I+
Sbjct: 279 QLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNR------LP 332
Query: 307 RRALLDLTHRVITRNK 322
+ L L ++ R K
Sbjct: 333 KEIFLGLAQKIYKRQK 348
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 94.0 bits (232), Expect = 7e-23
Identities = 60/289 (20%), Positives = 114/289 (39%), Gaps = 29/289 (10%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
+ GK R + +L V + E
Sbjct: 20 FPEQIMKDLPLY--GKMLRVRLSILSFKNRGVEIGEDAIS----------------SLAA 61
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEV 128
E++H+ASLLHDDV+D A RRG ++NF+ G+K A +A L+ +
Sbjct: 62 LELVHLASLLHDDVIDGARFRRGKETINFMYGDK--AAVAAGDLVLVSAFHTVEEIGNNK 119
Query: 129 VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 188
+ V ++ + S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 120 LRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGE 179
Query: 189 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLR 248
++ G +G YQ+ DD++DF G G D+++G+ + P++ AME+FP+ R
Sbjct: 180 D---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGF-LDLKNGVASFPLVTAMEKFPEAR 235
Query: 249 TVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 297
+ E + + ++ + +++ E L +
Sbjct: 236 QMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRD 279
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 78.2 bits (191), Expect = 4e-17
Identities = 68/323 (21%), Positives = 111/323 (34%), Gaps = 68/323 (21%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
+L + Y G GKR RP +LLL +LN A
Sbjct: 27 TQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTE-----------------YELGMKSA 67
Query: 67 EITEMIHVASLLHDDVLDDADTRRG-IGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 125
EMIH SL+HDD+ + N + + A+LAGD LL++A ++S
Sbjct: 68 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR 127
Query: 126 TEVVTL--------LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCK 177
+A+ +V G+ + M S Q ++ KT +L++ +
Sbjct: 128 LTDEVKIKVLQRLSIASGHVGMVGGQMLDMQ-SEGQPIDLETLEMIHKTKTGALLTFAVM 186
Query: 178 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 237
+ A +A Y +LG+ +Q+ DD+LD G A LGK SD+ + T
Sbjct: 187 SAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVS 246
Query: 238 LFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 297
L G + H + A + + E
Sbjct: 247 LL---------------------------------GKDGAEDKLTYHRDAAVDELTQIDE 273
Query: 298 NNDEDVTKSRRALLDLTHRVITR 320
+ + LL++ +R
Sbjct: 274 QFN------TKHLLEIVDLFYSR 290
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 139
Score = 26.5 bits (58), Expect = 2.9
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 8/104 (7%)
Query: 203 AYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFE---DSS 259
+L + + + + E + V +G+ D
Sbjct: 36 VEELQKGLRSMMEIEPQVVQEVNETANSIWLGTLEDEEFERPLEGTLVHPEGYVIRSDVD 95
Query: 260 NVDIALEYLGKSR-----GIQKTRELAVKHANLAAAAIDSLPEN 298
+ + +GK+ G+ L N+A +I P+N
Sbjct: 96 DGPFRIYIIGKTDAGVLYGVFHFLRLLQMGENIAQLSIIEQPKN 139
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 27.0 bits (59), Expect = 3.3
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 47 HDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 93
+ + T + ++ + AS + D V+D +TR+ I
Sbjct: 194 IEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIM 241
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 26.3 bits (57), Expect = 5.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 37 ALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 93
A+N+ + D +DA AT R Q+ + A + D V+ +DTRR I
Sbjct: 183 AVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIV 240
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 25.7 bits (56), Expect = 8.9
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 56 TELRTRQQCIAEITEMIHVASLLHDDV 82
T L++ Q +T I + H +
Sbjct: 406 TSLQSVAQACHFVTMCIFTCTGQHSSI 432
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.364
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,084,851
Number of extensions: 47609
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 18
Length of query: 322
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,240,546
Effective search space: 294009402
Effective search space used: 294009402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)