BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020686
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YDY|A Chain A, Crystal Structure Of Periplasmic Glycerophosphodiester
Phosphodiesterase From Escherichia Coli
pdb|1YDY|B Chain B, Crystal Structure Of Periplasmic Glycerophosphodiester
Phosphodiesterase From Escherichia Coli
Length = 356
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 50/267 (18%)
Query: 47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
+AHRG++G PE T A A +GAD++E D++ +KD L+ HD +LD T++AD
Sbjct: 34 IAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVAD--R 91
Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD----QQYNGKFP------- 155
F DR R ++ +DFTL+E+K+L+ + + + Q Y G+FP
Sbjct: 92 FPDRAR-------KDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFR 144
Query: 156 IITFEEYI----SIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211
+ TFEE I + + +GIYPE+K P F +Q +GK K ++ LKKYGY
Sbjct: 145 VHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKTLEVLKKYGYT 199
Query: 212 GAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILT-EDTNQSYSEITSDA 270
G +++Q F L I N+ + ++ V ++ D N++ + +
Sbjct: 200 GK-------DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGS 252
Query: 271 YLNY-------------IKEYCVGIGP 284
++NY + EY GIGP
Sbjct: 253 WVNYNYDWMFKPGAMKQVAEYADGIGP 279
>pdb|1T8Q|A Chain A, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|B Chain B, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|C Chain C, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|D Chain D, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
Length = 336
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 50/267 (18%)
Query: 47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
+AHRG++G PE T A A +GAD++E D++ +KD L+ HD +LD T++AD
Sbjct: 12 IAHRGASGYLPEHTLPAKAXAYAQGADYLEQDLVXTKDDNLVVLHDHYLDRVTDVAD--R 69
Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD----QQYNGKFP------- 155
F DR R ++ +DFTL+E+K+L+ + + + Q Y G+FP
Sbjct: 70 FPDRAR-------KDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPXGKSDFR 122
Query: 156 IITFEEYI----SIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211
+ TFEE I + + +GIYPE+K P F +Q +GK K ++ LKKYGY
Sbjct: 123 VHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKTLEVLKKYGYT 177
Query: 212 GAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILT-EDTNQSYSEITSDA 270
G +++Q F L I N+ + ++ V ++ D N++ + +
Sbjct: 178 GK-------DDKVYLQCFDADELKRIKNELEPKXGXELNLVQLIAYTDWNETQQKQPDGS 230
Query: 271 YLNY-------------IKEYCVGIGP 284
++NY + EY GIGP
Sbjct: 231 WVNYNYDWXFKPGAXKQVAEYADGIGP 257
>pdb|2PZ0|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) From T. Tengcongensis
pdb|2PZ0|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) From T. Tengcongensis
Length = 252
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 45/203 (22%)
Query: 47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
+AHRG + PE T AA+ RA+E GAD IE D+ +KDG L+ HD +D TTN
Sbjct: 15 IAHRGDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTTNGEG--- 71
Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIA 166
FV DFTLEE+K L A ++ +++ G+ I T E +
Sbjct: 72 ------------------FVKDFTLEEIKKLDAGIKFG---EKFAGE-RIPTLYEVFELI 109
Query: 167 LDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFI 226
D +V I E+K+ + + + E+K + +K+Y + ++ + I
Sbjct: 110 GDKDFLVNI--EIKSGIVLYPGI--------EEKLIKAIKEYNF----------EERVII 149
Query: 227 QSFAPTSLVYISNKTDSPKIFLI 249
SF SL + KI L+
Sbjct: 150 SSFNHYSLRDVKKMAPHLKIGLL 172
>pdb|2OOG|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|B Chain B, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|C Chain C, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|D Chain D, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|E Chain E, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|F Chain F, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|A Chain A, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|B Chain B, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|C Chain C, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|D Chain D, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|E Chain E, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|F Chain F, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|G Chain G, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|H Chain H, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
Length = 287
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 110/257 (42%), Gaps = 62/257 (24%)
Query: 39 LQTSRPYNLAHRGSNGEFPEETAAAYMRAIEE-GADFIETDILASKDGVLICHHDVFLDD 97
L R +AHRG++G PE T AY ++ E A +IE D+ +KDG L+ HD ++
Sbjct: 19 LTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNR 78
Query: 98 TTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQY------N 151
TTN H + V D+TL+ELK L A ++ + +Y N
Sbjct: 79 TTN--GHGK-------------------VEDYTLDELKQLDAGSWFNKKYPKYARASYKN 117
Query: 152 GKFPII--TFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYG 209
K P + E Y A Y E K+P E++ + +LKK+
Sbjct: 118 AKVPTLDEILERYGPNA-------NYYIETKSPDVY---------PGMEEQLLASLKKH- 160
Query: 210 YKGAYMSKEWLKQ-PIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEIT 267
++ LK + IQSF+ SL I + P + L+D ++ Q +
Sbjct: 161 ---HLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGEL------QQF---- 207
Query: 268 SDAYLNYIKEYCVGIGP 284
+D L I+ Y +G+GP
Sbjct: 208 NDQRLKEIRSYAIGLGP 224
>pdb|1ZCC|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|C Chain C, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|D Chain D, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|E Chain E, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|F Chain F, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
Length = 248
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100
++HRG+N PE T AA A+++GAD+IE D+ S DGVL HD LD TTN
Sbjct: 5 VSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTN 58
>pdb|3QVQ|A Chain A, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|B Chain B, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|C Chain C, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|D Chain D, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
Length = 252
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100
P +AHRGS+G+ PE T A+ A ++G ++E D+ S DG+ + HD +L TT+
Sbjct: 10 PQVIAHRGSSGQAPENTLASLHLAGQQGIKWVEIDVXLSGDGIPVIFHDDYLSRTTD 66
>pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga
Maritima At 1.60 A Resolution
Length = 234
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 11/79 (13%)
Query: 47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHH----------DVFLD 96
L HRG + ++ E T A+M+AIE GA+ +E D+ SKDG ++ H DV +
Sbjct: 16 LGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGLDVKIR 75
Query: 97 DTTNIADHKEFADRKRTCM 115
D T +++ KE D K T +
Sbjct: 76 DAT-VSELKELTDGKITTL 93
>pdb|3I10|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Np_812074.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.35 A Resolution
Length = 278
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTT 99
+AHRG+ PE + AA AI D +E DI +KDG LI HD LD TT
Sbjct: 21 VAHRGNWRSAPENSTAAIDSAIAXKVDIVEIDIQKTKDGQLILXHDNTLDRTT 73
>pdb|3CH0|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase (Yp_677622.1) From Cytophaga
Hutchinsonii Atcc 33406 At 1.50 A Resolution
Length = 272
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 48 AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95
HRG G PE T AA+ +A+ G +E D++ SKD ++ HD F
Sbjct: 13 GHRGCRGLLPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSHDTFF 60
>pdb|1V8E|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Thermus Thermophilus Hb8
pdb|1VD6|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase Complexed With Glycerol
Length = 224
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHD 92
RP L HRG+ + E T ++ A+E G D +E D+ ++DGV HD
Sbjct: 6 QRPLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHD 56
>pdb|3KS5|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 2.05 A Resolution
pdb|3KS5|B Chain B, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 2.05 A Resolution
pdb|3KS6|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
pdb|3KS6|B Chain B, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
pdb|3KS6|C Chain C, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
pdb|3KS6|D Chain D, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
Length = 250
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 48 AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN----IAD 103
+HRG EF + T + + +E D+ + DG ++ HHD LD TT+ I D
Sbjct: 7 SHRGGTLEFGDSTPHGFTATAAXALEEVEFDLHPTADGAIVVHHDPTLDATTDXTGAIVD 66
Query: 104 HKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFR 146
A K + G + TLEEL L +FR
Sbjct: 67 -XTLAKVKTATIRYGAGSH-----PXTLEELCALYVDSHVNFR 103
>pdb|2OTD|A Chain A, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
pdb|2OTD|B Chain B, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
pdb|2OTD|C Chain C, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
pdb|2OTD|D Chain D, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
Length = 247
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100
P +AHRG PE T AA + G IE D SKDG + HD L+ T+N
Sbjct: 7 PRIVAHRGGGKLAPENTLAAIDVGAKYGHKXIEFDAKLSKDGEIFLLHDDNLERTSN 63
>pdb|3L12|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Yp_165505.1) From Silicibacter
Pomeroyi Dss-3 At 1.60 A Resolution
pdb|3L12|B Chain B, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Yp_165505.1) From Silicibacter
Pomeroyi Dss-3 At 1.60 A Resolution
Length = 313
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95
+ HRG+ G PE T + + G +E D++ + DGV + H+ L
Sbjct: 21 IGHRGARGVXPENTLEGFAFTLAAGVRALEFDVVXTADGVPVVTHNHHL 69
>pdb|3MZ2|A Chain A, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
pdb|3MZ2|B Chain B, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
Length = 292
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 44 PYNLAHRGSNGE-FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIA 102
P HRG G+ +PE + + + E D +KD V++ HD L+ T+
Sbjct: 32 PLISGHRGGRGKGYPENSXETFENTLSYTPATFEIDPRLTKDSVIVLFHDDTLERTS--- 88
Query: 103 DHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAK 140
N TG V D+T EEL+ R K
Sbjct: 89 -----------------NGTG-KVSDYTWEELQNFRLK 108
>pdb|3EOE|A Chain A, Crystal Structure Of Pyruvate Kinase From Toxoplasma
Gondii, 55.M00007
pdb|3EOE|B Chain B, Crystal Structure Of Pyruvate Kinase From Toxoplasma
Gondii, 55.M00007
pdb|3EOE|C Chain C, Crystal Structure Of Pyruvate Kinase From Toxoplasma
Gondii, 55.M00007
pdb|3EOE|D Chain D, Crystal Structure Of Pyruvate Kinase From Toxoplasma
Gondii, 55.M00007
pdb|3GG8|A Chain A, Crystal Structure Of The Toxoplasma Gondii Pyruvate Kinase
N Terminal Truncated
pdb|3GG8|B Chain B, Crystal Structure Of The Toxoplasma Gondii Pyruvate Kinase
N Terminal Truncated
pdb|3GG8|C Chain C, Crystal Structure Of The Toxoplasma Gondii Pyruvate Kinase
N Terminal Truncated
pdb|3GG8|D Chain D, Crystal Structure Of The Toxoplasma Gondii Pyruvate Kinase
N Terminal Truncated
Length = 511
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 78 DILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFT--LEEL- 134
+ILA DG++I D+ ++ I K F +K M+ N G V+ T LE +
Sbjct: 267 EILAEADGIMIARGDLGME----IPPEKVFLAQKM--MIAKCNVVGKPVITATQMLESMI 320
Query: 135 ---KTLRAKQR------------YSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEM 179
+ RA+ + NG+FP+IT E I +A+ V YP +
Sbjct: 321 KNPRPTRAEAADVANAVLDGTDCVMLSGETANGEFPVITVETMARICYEAETCVD-YPAL 379
Query: 180 KN--------PVFINQHVKWADGKKFE---DKFVDTLKKYGYKGAYMSKEWLKQPIFIQS 228
P+ + V A + E + L + G ++K QPI S
Sbjct: 380 YRAMCLAVPPPISTQEAVARAAVETAECVNAAIILALTETGQTARLIAKYRPMQPILALS 439
Query: 229 FAPTSLVYI 237
+ +++ ++
Sbjct: 440 ASESTIKHL 448
>pdb|2O55|A Chain A, Crystal Structure Of A Putative Glycerophosphodiester
Phosphodiesterase From Galdieria Sulphuraria
Length = 258
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 44 PYNLAHRG--SNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDV-------F 94
P + HRG G PE T +++ E +IETD+ K G ++ H +
Sbjct: 7 PKIVGHRGVGKEGLAPENTLRSFVLCXERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFY 66
Query: 95 LDDTTNIAD 103
D T+ I D
Sbjct: 67 KDGTSRIGD 75
>pdb|2QVP|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|C Chain C, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
Length = 275
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 57 PEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDT 98
P +A R + E A ++ +AS+DG+L CH DV DT
Sbjct: 139 PGADTSAEGRILLEHAHLLQ---VASRDGILTCHEDVLXTDT 177
>pdb|1S3R|A Chain A, Crystal Structure Of The Human-Specific Toxin
Intermedilysin
pdb|1S3R|B Chain B, Crystal Structure Of The Human-Specific Toxin
Intermedilysin
Length = 535
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 68 IEEGADFIETDILASKDGVLICHHD--------VFLDDTTNIADHKEFADRKRTCMVQGV 119
I+ D+IET + + KDG L +HD V+ ++ + AD E R R+ G
Sbjct: 405 IQNNTDYIETKVTSYKDGALTLNHDGAFVARFYVYWEELGHDADGYETI-RSRSWSGNGY 463
Query: 120 NTTGFFVVDFTLE-ELKTLRAK 140
N + + ++ +R K
Sbjct: 464 NRGAHYSTTLRFKGNVRNIRVK 485
>pdb|3B2Y|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
pdb|3B2Y|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
Length = 275
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 81 ASKDGVLICHHDVFLDDT 98
AS+DG+L CH DV ++T
Sbjct: 161 ASRDGILTCHEDVLXNET 178
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 125 FVVDFTLEELKTLRAK----QRYSFRDQQYNGKFPI---ITFEEYISIALDAQRVVGIYP 177
F +D+ +EE + LR+K ++ Y G + + +++++ + + + +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKVFLXGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV-- 134
Query: 178 EMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
P+ + + + D + K+ D +KKYG G+Y + E+
Sbjct: 135 ----PLTVKEXNRLID--ELPAKYRDAIKKYGSSGSYENPEY 170
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 125 FVVDFTLEELKTLRAK----QRYSFRDQQYNGKFPI---ITFEEYISIALDAQRVVGIYP 177
F +D+ +EE + LR+K ++ Y G + + +++++ + + + +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV-- 134
Query: 178 EMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
P+ + + + D + K+ D +KKYG G+Y + E+
Sbjct: 135 ----PLTVKEMNRLID--ELPAKYRDAIKKYGSSGSYENPEY 170
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 125 FVVDFTLEELKTLRAK----QRYSFRDQQYNGKFPI---ITFEEYISIALDAQRVVGIYP 177
F +D+ +EE + LR+K ++ Y G + + +++++ + + + +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV-- 134
Query: 178 EMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
P+ + + + D + K+ D +KKYG G+Y + E+
Sbjct: 135 ----PLTVKEMNRLID--ELPAKYRDAIKKYGSSGSYENPEY 170
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 125 FVVDFTLEELKTLRAK----QRYSFRDQQYNGKFPI---ITFEEYISIALDAQRVVGIYP 177
F +D+ +EE + LR+K ++ Y G + + +++++ + + + +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV-- 134
Query: 178 EMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
P+ + + + D + K+ D +KKYG G+Y + E+
Sbjct: 135 ----PLTVKEMNRLID--ELPAKYRDAIKKYGSSGSYENPEY 170
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 125 FVVDFTLEELKTLRAK----QRYSFRDQQYNGKFPI---ITFEEYISIALDAQRVVGIYP 177
F +D+ +EE + LR+K ++ Y G + + +++++ + + + +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV-- 134
Query: 178 EMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
P+ + + + D + K+ D +KKYG G+Y + E+
Sbjct: 135 ----PLTVKEMNRLID--ELPAKYRDAIKKYGSSGSYENPEY 170
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 125 FVVDFTLEELKTLRAK----QRYSFRDQQYNGKFPI---ITFEEYISIALDAQRVVGIYP 177
F +D+ +EE + LR+K ++ Y G + + +++++ + + + +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV-- 134
Query: 178 EMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
P+ + + + D + K+ D +KKYG G+Y + E+
Sbjct: 135 ----PLTVKEMNRLID--ELPAKYRDAIKKYGSSGSYENPEY 170
>pdb|3NQO|A Chain A, Crystal Structure Of A Marr Family Transcriptional
Regulator (Cd1569) From Clostridium Difficile 630 At
2.20 A Resolution
pdb|3NQO|B Chain B, Crystal Structure Of A Marr Family Transcriptional
Regulator (Cd1569) From Clostridium Difficile 630 At
2.20 A Resolution
Length = 189
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 113 TCMVQGVNTTGFFVVDFTLEELKTLRA--KQRYSFRDQQYNGKFPIITFEEYISIALDAQ 170
TC G+N +FT +EL+TL + K+ Y F ++ +G F EY I
Sbjct: 113 TCSRTGINFXADVFHEFTKDELETLWSLLKKXYRFNGEEQDGFEEDANFXEYEEIDKIKS 172
Query: 171 RVVGIYPEMKNPVFIN 186
+ + + +N V N
Sbjct: 173 EALEEFAKRRNRVNKN 188
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 125 FVVDFTLEELKTLRAK----QRYSFRDQQYNGKFPI---ITFEEYISIALDAQRVVGIYP 177
F +D+ +EE + LR+K ++ Y G + + +++++ + + + +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKVFLMGSAYGGALALAYAVKYQDHLKGLIVSGGLSSV-- 134
Query: 178 EMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
P+ + + + D + K+ D +KKYG G+Y + E+
Sbjct: 135 ----PLTVKEMNRLID--ELPAKYRDAIKKYGSSGSYENPEY 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,087,738
Number of Sequences: 62578
Number of extensions: 442348
Number of successful extensions: 1033
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 998
Number of HSP's gapped (non-prelim): 31
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)