Query 020686
Match_columns 322
No_of_seqs 158 out of 1434
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:21:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 3.1E-52 6.6E-57 379.9 24.3 251 44-321 1-258 (299)
2 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 3.1E-50 6.7E-55 373.2 26.6 267 44-321 1-276 (309)
3 cd08571 GDPD_SHV3_plant Glycer 100.0 1.9E-49 4.2E-54 366.8 24.5 255 44-322 1-262 (302)
4 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 6.2E-49 1.3E-53 368.5 25.6 262 42-321 15-301 (356)
5 PRK11143 glpQ glycerophosphodi 100.0 9.2E-48 2E-52 361.8 27.1 278 9-321 6-313 (355)
6 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 1.4E-47 3E-52 354.3 25.2 255 44-322 1-261 (300)
7 cd08600 GDPD_EcGlpQ_like Glyce 100.0 2E-47 4.3E-52 355.8 24.7 258 44-322 1-287 (318)
8 cd08559 GDPD_periplasmic_GlpQ_ 100.0 4.7E-47 1E-51 350.9 24.3 257 44-321 1-266 (296)
9 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 4.9E-45 1.1E-49 330.0 22.1 220 43-322 1-234 (252)
10 cd08580 GDPD_Rv2277c_like Glyc 100.0 5.1E-45 1.1E-49 330.2 16.4 227 44-322 1-241 (263)
11 cd08601 GDPD_SaGlpQ_like Glyce 100.0 1E-43 2.2E-48 322.4 23.2 220 45-322 2-229 (256)
12 PRK09454 ugpQ cytoplasmic glyc 100.0 2.9E-43 6.2E-48 318.2 23.5 212 42-322 6-220 (249)
13 cd08573 GDPD_GDE1 Glycerophosp 100.0 2.3E-43 5.1E-48 320.0 22.7 226 46-322 1-239 (258)
14 cd08562 GDPD_EcUgpQ_like Glyce 100.0 3.4E-43 7.4E-48 313.7 22.6 210 46-322 1-210 (229)
15 cd08612 GDPD_GDE4 Glycerophosp 100.0 4.2E-43 9.2E-48 325.1 22.2 234 38-322 21-272 (300)
16 cd08581 GDPD_like_1 Glyceropho 100.0 4.8E-43 1E-47 312.7 21.4 209 46-322 1-210 (229)
17 cd08568 GDPD_TmGDE_like Glycer 100.0 4.5E-43 9.8E-48 312.6 20.8 203 45-322 1-205 (226)
18 cd08610 GDPD_GDE6 Glycerophosp 100.0 6.4E-43 1.4E-47 323.6 21.6 224 39-322 18-256 (316)
19 cd08609 GDPD_GDE3 Glycerophosp 100.0 9E-43 2E-47 322.7 21.8 218 43-322 26-256 (315)
20 cd08563 GDPD_TtGDE_like Glycer 100.0 2E-42 4.3E-47 309.2 23.0 210 44-322 1-211 (230)
21 cd08608 GDPD_GDE2 Glycerophosp 100.0 1.2E-42 2.7E-47 325.1 21.8 220 43-322 1-234 (351)
22 cd08582 GDPD_like_2 Glyceropho 100.0 2.4E-42 5.1E-47 309.3 22.5 210 46-322 1-212 (233)
23 cd08579 GDPD_memb_like Glycero 100.0 9E-43 2E-47 309.4 19.0 201 46-322 1-201 (220)
24 cd08565 GDPD_pAtGDE_like Glyce 100.0 1.9E-42 4.1E-47 310.0 20.9 210 46-322 1-212 (235)
25 cd08575 GDPD_GDE4_like Glycero 100.0 3.1E-42 6.8E-47 313.8 20.3 229 44-322 1-242 (264)
26 cd08567 GDPD_SpGDE_like Glycer 100.0 1.4E-41 3E-46 309.4 21.6 232 45-322 2-242 (263)
27 cd08585 GDPD_like_3 Glyceropho 100.0 9.1E-42 2E-46 305.8 19.5 212 44-322 4-220 (237)
28 cd08607 GDPD_GDE5 Glycerophosp 100.0 2.5E-41 5.4E-46 312.2 21.6 246 45-322 1-271 (290)
29 cd08572 GDPD_GDE5_like Glycero 100.0 1.9E-41 4.1E-46 312.7 19.1 245 45-322 1-274 (293)
30 cd08570 GDPD_YPL206cp_fungi Gl 100.0 5.1E-41 1.1E-45 300.9 21.2 210 46-322 1-215 (234)
31 cd08564 GDPD_GsGDE_like Glycer 100.0 8.4E-41 1.8E-45 304.8 21.7 211 41-318 1-230 (265)
32 cd08561 GDPD_cytoplasmic_ScUgp 100.0 2.3E-40 5E-45 299.3 20.3 212 46-322 1-223 (249)
33 cd08606 GDPD_YPL110cp_fungi Gl 100.0 3.1E-40 6.8E-45 304.2 21.4 233 44-322 2-258 (286)
34 cd08605 GDPD_GDE5_like_1_plant 100.0 3.4E-40 7.4E-45 303.4 20.9 234 45-322 1-263 (282)
35 cd08566 GDPD_AtGDE_like Glycer 100.0 7.2E-40 1.6E-44 294.3 21.0 204 45-321 1-207 (240)
36 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 2.3E-38 4.9E-43 284.3 19.9 211 46-322 1-216 (237)
37 cd08613 GDPD_GDE4_like_1 Glyce 100.0 7.6E-38 1.6E-42 286.0 20.8 221 40-322 20-285 (309)
38 COG0584 UgpQ Glycerophosphoryl 100.0 9.2E-37 2E-41 276.9 20.2 222 43-322 5-228 (257)
39 PF03009 GDPD: Glycerophosphor 100.0 2.7E-36 5.8E-41 271.4 15.5 227 49-322 1-233 (256)
40 cd08556 GDPD Glycerophosphodie 100.0 4.1E-33 8.8E-38 240.8 18.2 171 46-322 1-171 (189)
41 cd08555 PI-PLCc_GDPD_SF Cataly 100.0 2.9E-31 6.2E-36 228.3 16.9 155 46-321 1-159 (179)
42 cd08578 GDPD_NUC-2_fungi Putat 99.9 1.2E-26 2.7E-31 213.0 18.7 229 60-320 17-276 (300)
43 KOG2258 Glycerophosphoryl dies 99.9 2.3E-25 5.1E-30 208.7 12.2 221 43-321 68-289 (341)
44 cd08584 PI-PLCc_GDPD_SF_unchar 99.9 1.4E-21 3E-26 167.0 15.5 154 46-316 1-154 (192)
45 cd08577 PI-PLCc_GDPD_SF_unchar 99.3 2.1E-11 4.5E-16 108.4 10.0 96 64-212 15-110 (228)
46 cd08592 PI-PLCc_gamma Catalyti 98.7 1E-07 2.2E-12 83.9 8.9 43 54-96 25-67 (229)
47 cd08576 GDPD_like_SMaseD_PLD G 98.6 4.1E-07 9E-12 82.0 11.1 43 46-95 2-45 (265)
48 cd08627 PI-PLCc_gamma1 Catalyt 98.6 2.5E-07 5.4E-12 81.2 8.7 42 54-95 25-66 (229)
49 KOG2421 Predicted starch-bindi 98.1 4.8E-07 1E-11 87.3 -1.8 61 40-100 321-388 (417)
50 smart00148 PLCXc Phospholipase 97.9 7.4E-05 1.6E-09 61.1 9.5 43 53-95 23-65 (135)
51 cd08597 PI-PLCc_PRIP_metazoa C 97.9 1.5E-05 3.3E-10 71.7 4.6 42 55-96 26-67 (260)
52 cd08594 PI-PLCc_eta Catalytic 97.4 0.00092 2E-08 59.0 8.6 41 55-95 26-66 (227)
53 cd08633 PI-PLCc_eta2 Catalytic 97.3 0.0013 2.8E-08 58.9 8.5 51 41-95 16-66 (254)
54 cd08596 PI-PLCc_epsilon Cataly 97.3 0.0015 3.2E-08 58.7 8.6 41 55-95 26-66 (254)
55 cd08631 PI-PLCc_delta4 Catalyt 97.2 0.0015 3.2E-08 58.8 8.5 41 55-95 26-66 (258)
56 cd08632 PI-PLCc_eta1 Catalytic 97.2 0.0017 3.6E-08 58.1 8.5 51 41-95 16-66 (253)
57 cd08595 PI-PLCc_zeta Catalytic 97.2 0.0019 4E-08 58.1 8.6 51 41-95 16-66 (257)
58 cd08593 PI-PLCc_delta Catalyti 97.1 0.0023 4.9E-08 57.7 8.4 41 55-95 26-66 (257)
59 cd08626 PI-PLCc_beta4 Catalyti 97.1 0.0026 5.6E-08 57.2 8.4 41 55-95 26-68 (257)
60 PF10223 DUF2181: Uncharacteri 96.8 0.066 1.4E-06 48.1 14.8 38 58-95 11-54 (244)
61 cd08630 PI-PLCc_delta3 Catalyt 96.7 0.0024 5.3E-08 57.5 4.7 42 55-96 26-67 (258)
62 cd08558 PI-PLCc_eukaryota Cata 96.6 0.003 6.5E-08 55.8 5.0 41 55-95 26-66 (226)
63 cd08599 PI-PLCc_plant Catalyti 96.6 0.0033 7.1E-08 55.7 5.1 41 55-95 26-66 (228)
64 cd08628 PI-PLCc_gamma2 Catalyt 96.6 0.0025 5.5E-08 57.2 4.4 41 55-95 26-66 (254)
65 cd08629 PI-PLCc_delta1 Catalyt 96.6 0.003 6.5E-08 56.8 4.8 42 55-96 26-67 (258)
66 cd08598 PI-PLC1c_yeast Catalyt 96.5 0.0042 9.1E-08 55.1 4.8 42 55-96 26-67 (231)
67 cd08623 PI-PLCc_beta1 Catalyti 96.3 0.0051 1.1E-07 55.4 4.6 52 41-96 16-69 (258)
68 cd08624 PI-PLCc_beta2 Catalyti 96.3 0.0051 1.1E-07 55.5 4.5 42 55-96 26-69 (261)
69 cd08591 PI-PLCc_beta Catalytic 96.1 0.0074 1.6E-07 54.3 4.6 42 55-96 26-69 (257)
70 cd08625 PI-PLCc_beta3 Catalyti 96.0 0.0089 1.9E-07 54.0 4.5 42 55-96 26-69 (258)
71 PLN02230 phosphoinositide phos 95.7 0.041 8.9E-07 55.4 8.2 49 47-95 128-179 (598)
72 PLN02952 phosphoinositide phos 94.8 0.12 2.7E-06 52.1 8.4 49 47-95 136-188 (599)
73 KOG1264 Phospholipase C [Lipid 94.6 0.028 6E-07 57.5 3.3 79 11-95 286-373 (1267)
74 PLN02222 phosphoinositide phos 94.0 0.21 4.5E-06 50.4 8.0 49 47-95 116-168 (581)
75 KOG0169 Phosphoinositide-speci 93.6 0.062 1.3E-06 54.7 3.5 59 38-96 288-354 (746)
76 PLN02228 Phosphoinositide phos 93.2 0.11 2.3E-06 52.2 4.4 50 47-96 119-172 (567)
77 PLN02223 phosphoinositide phos 91.0 0.28 6E-06 48.8 4.3 50 47-96 119-172 (537)
78 cd00137 PI-PLCc Catalytic doma 90.2 0.47 1E-05 43.5 4.8 40 56-95 32-71 (274)
79 PF08139 LPAM_1: Prokaryotic m 89.1 0.23 5E-06 28.0 1.1 21 2-22 5-25 (25)
80 PF00388 PI-PLC-X: Phosphatidy 87.3 1.1 2.3E-05 36.8 4.7 40 56-95 24-63 (146)
81 cd08589 PI-PLCc_SaPLC1_like Ca 82.0 3.4 7.4E-05 38.7 5.9 41 56-96 42-102 (324)
82 KOG2421 Predicted starch-bindi 70.1 2.2 4.7E-05 41.6 1.2 50 45-94 43-106 (417)
83 PRK11372 lysozyme inhibitor; P 67.2 6.7 0.00014 30.7 3.2 23 1-25 1-23 (109)
84 PF02638 DUF187: Glycosyl hydr 61.9 7.1 0.00015 36.5 2.9 18 301-318 73-90 (311)
85 PF13653 GDPD_2: Glycerophosph 61.4 9.1 0.0002 22.6 2.3 20 59-78 8-27 (30)
86 TIGR02764 spore_ybaN_pdaB poly 59.7 49 0.0011 28.0 7.6 26 296-321 105-130 (191)
87 PF13627 LPAM_2: Prokaryotic l 58.5 13 0.00028 20.8 2.4 17 8-24 3-19 (24)
88 KOG1265 Phospholipase C [Lipid 57.6 18 0.0004 38.2 5.1 51 41-95 328-380 (1189)
89 PRK11443 lipoprotein; Provisio 55.2 11 0.00023 30.3 2.5 18 7-24 3-20 (124)
90 PRK15396 murein lipoprotein; P 51.4 13 0.00028 27.3 2.1 17 7-23 8-24 (78)
91 PRK11548 outer membrane biogen 51.3 12 0.00025 29.5 2.1 22 1-22 1-22 (113)
92 PRK05904 coproporphyrinogen II 50.4 29 0.00063 33.0 5.1 60 158-239 74-134 (353)
93 PRK09810 entericidin A; Provis 50.1 12 0.00026 23.8 1.6 21 5-25 4-24 (41)
94 PRK08446 coproporphyrinogen II 49.4 30 0.00065 32.7 5.0 59 159-239 70-129 (350)
95 PRK11197 lldD L-lactate dehydr 49.4 65 0.0014 31.0 7.2 24 299-322 136-159 (381)
96 cd04736 MDH_FMN Mandelate dehy 49.2 60 0.0013 31.0 6.9 71 197-322 82-152 (361)
97 COG4238 Murein lipoprotein [Ce 48.4 15 0.00032 26.5 2.0 19 4-22 5-23 (78)
98 COG0635 HemN Coproporphyrinoge 48.3 36 0.00078 33.2 5.4 39 195-242 133-171 (416)
99 TIGR02873 spore_ylxY probable 47.7 1E+02 0.0022 28.0 8.0 26 296-321 184-209 (268)
100 COG5510 Predicted small secret 46.9 15 0.00033 23.5 1.7 17 6-22 8-24 (44)
101 COG5633 Predicted periplasmic 46.8 32 0.0007 27.2 3.8 19 9-27 6-24 (123)
102 COG5461 Type IV pili component 46.2 35 0.00075 29.6 4.3 37 8-48 11-47 (224)
103 PRK11627 hypothetical protein; 46.2 17 0.00037 31.5 2.5 19 6-24 4-22 (192)
104 cd08590 PI-PLCc_Rv2075c_like C 45.9 24 0.00052 32.2 3.6 37 57-94 40-76 (267)
105 PRK09057 coproporphyrinogen II 45.7 37 0.00079 32.6 5.0 61 158-240 73-136 (380)
106 PRK06294 coproporphyrinogen II 45.5 36 0.00077 32.5 4.9 61 156-239 74-134 (370)
107 COG3056 Uncharacterized lipopr 45.3 23 0.00051 30.3 3.1 22 6-27 17-38 (204)
108 PLN02535 glycolate oxidase 44.9 76 0.0017 30.4 6.9 24 299-322 138-161 (364)
109 PRK00022 lolB outer membrane l 44.7 23 0.00049 30.7 3.1 18 5-22 3-20 (202)
110 PF10210 MRP-S32: Mitochondria 44.5 17 0.00036 27.8 1.9 17 77-93 4-21 (96)
111 cd08557 PI-PLCc_bacteria_like 43.4 30 0.00064 31.0 3.8 38 58-95 37-75 (271)
112 PLN02493 probable peroxisomal 42.5 85 0.0018 30.1 6.8 24 299-322 136-159 (367)
113 COG3009 Uncharacterized protei 42.2 18 0.00039 30.9 1.9 72 9-95 5-78 (190)
114 PRK09973 putative outer membra 41.6 23 0.00051 26.3 2.3 17 7-23 7-23 (85)
115 PF12912 N_NLPC_P60: NLPC_P60 40.8 9.1 0.0002 30.5 0.0 19 8-26 2-20 (124)
116 PRK06582 coproporphyrinogen II 40.5 50 0.0011 31.9 5.0 61 158-240 80-143 (390)
117 COG4594 FecB ABC-type Fe3+-cit 40.4 25 0.00054 31.9 2.6 24 3-26 5-28 (310)
118 PRK13347 coproporphyrinogen II 39.6 43 0.00094 32.9 4.6 63 156-240 119-184 (453)
119 KOG2492 CDK5 activator-binding 39.3 2.8E+02 0.0061 27.1 9.5 66 156-240 309-374 (552)
120 PRK05628 coproporphyrinogen II 38.9 57 0.0012 31.1 5.2 61 157-239 76-139 (375)
121 cd03332 LMO_FMN L-Lactate 2-mo 38.4 1E+02 0.0022 29.8 6.7 24 299-322 152-175 (383)
122 PRK08599 coproporphyrinogen II 38.0 61 0.0013 30.9 5.2 62 156-239 67-131 (377)
123 COG0191 Fba Fructose/tagatose 37.5 2.1E+02 0.0045 26.4 8.2 19 297-315 115-133 (286)
124 TIGR00539 hemN_rel putative ox 36.9 66 0.0014 30.5 5.2 61 157-239 68-131 (360)
125 PRK07379 coproporphyrinogen II 36.9 65 0.0014 31.1 5.3 62 157-240 83-147 (400)
126 PF02402 Lysis_col: Lysis prot 36.6 24 0.00052 22.7 1.4 17 9-25 8-24 (46)
127 PRK13883 conjugal transfer pro 36.3 31 0.00068 28.6 2.5 16 7-22 4-19 (151)
128 COG0189 RimK Glutathione synth 36.3 66 0.0014 30.1 5.0 43 48-90 238-284 (318)
129 PF14991 MLANA: Protein melan- 36.1 12 0.00025 29.4 -0.1 17 5-21 29-45 (118)
130 TIGR02722 lp_ uncharacterized 35.8 36 0.00077 29.3 2.9 17 7-23 5-21 (189)
131 KOG0538 Glycolate oxidase [Ene 35.7 41 0.00088 31.4 3.3 26 297-322 133-158 (363)
132 COG5645 Predicted periplasmic 35.7 22 0.00049 25.9 1.3 11 13-23 10-20 (80)
133 PRK10781 rcsF outer membrane l 35.6 64 0.0014 26.2 4.1 19 7-25 3-21 (133)
134 PRK13835 conjugal transfer pro 35.3 39 0.00085 27.8 2.9 19 6-24 3-21 (145)
135 PRK09058 coproporphyrinogen II 35.1 62 0.0013 31.8 4.8 60 158-239 132-194 (449)
136 PRK10175 lipoprotein; Provisio 34.9 24 0.00051 25.6 1.4 19 7-25 3-21 (75)
137 TIGR00548 lolB outer membrane 34.8 32 0.00069 29.9 2.5 18 7-24 4-21 (202)
138 PF06474 MLTD_N: MltD lipid at 34.7 34 0.00075 20.8 1.8 14 9-22 21-34 (34)
139 TIGR00538 hemN oxygen-independ 34.4 64 0.0014 31.7 4.8 62 156-239 118-182 (455)
140 TIGR03352 VI_chp_3 type VI sec 34.3 39 0.00084 27.8 2.8 15 9-23 5-19 (146)
141 TIGR02708 L_lactate_ox L-lacta 34.3 1.4E+02 0.0029 28.7 6.8 24 299-322 147-170 (367)
142 cd08588 PI-PLCc_At5g67130_like 34.2 38 0.00082 31.0 3.0 36 56-92 33-68 (270)
143 PRK09249 coproporphyrinogen II 34.1 63 0.0014 31.8 4.7 63 156-240 118-183 (453)
144 PLN02979 glycolate oxidase 33.7 1.4E+02 0.0031 28.6 6.8 24 299-322 135-158 (366)
145 COG1649 Uncharacterized protei 33.4 29 0.00063 33.8 2.1 18 301-318 118-135 (418)
146 PRK10866 outer membrane biogen 33.4 42 0.00091 30.0 3.1 22 1-22 1-22 (243)
147 TIGR00752 slp outer membrane l 33.3 24 0.00052 30.3 1.4 13 10-22 8-20 (182)
148 TIGR03850 bind_CPR_0540 carboh 32.9 1.4E+02 0.0031 28.5 7.0 20 5-24 5-24 (437)
149 PRK05660 HemN family oxidoredu 32.7 79 0.0017 30.3 5.0 59 159-239 77-138 (378)
150 TIGR01163 rpe ribulose-phospha 32.6 41 0.00088 28.8 2.8 24 55-78 8-31 (210)
151 PRK10081 entericidin B membran 32.5 28 0.0006 23.0 1.3 16 7-22 9-24 (48)
152 PRK07998 gatY putative fructos 32.4 2.9E+02 0.0062 25.5 8.4 17 298-314 115-131 (283)
153 COG3521 Predicted component of 32.3 37 0.00081 28.4 2.3 21 5-25 5-25 (159)
154 TIGR02884 spore_pdaA delta-lac 32.1 3.5E+02 0.0075 23.7 9.4 26 296-321 137-162 (224)
155 PRK05265 pyridoxine 5'-phospha 32.1 3.8E+02 0.0082 24.1 13.3 138 50-249 16-154 (239)
156 PF13798 PCYCGC: Protein of un 31.6 48 0.001 27.7 2.8 19 8-26 2-20 (158)
157 PF14871 GHL6: Hypothetical gl 31.5 48 0.001 26.8 2.8 18 301-318 47-64 (132)
158 TIGR02747 TraV type IV conjuga 31.5 31 0.00067 28.4 1.7 17 6-22 4-20 (144)
159 TIGR02898 spore_YhcN_YlaJ spor 31.4 34 0.00074 28.6 2.0 37 195-241 97-133 (158)
160 PRK04183 glutamyl-tRNA(Gln) am 31.3 61 0.0013 31.7 4.0 42 40-93 177-223 (419)
161 PRK11251 DNA-binding transcrip 31.2 38 0.00081 26.5 2.1 18 5-22 3-20 (109)
162 COG3017 LolB Outer membrane li 30.7 43 0.00093 29.2 2.5 22 3-24 5-26 (206)
163 PRK13792 lysozyme inhibitor; P 30.3 39 0.00084 27.2 2.0 21 6-26 5-25 (127)
164 COG3317 NlpB Uncharacterized l 30.3 55 0.0012 30.8 3.3 21 5-25 5-25 (342)
165 PF06291 Lambda_Bor: Bor prote 29.7 37 0.0008 26.0 1.7 67 8-82 5-72 (97)
166 COG4314 NosL Predicted lipopro 29.5 55 0.0012 27.3 2.8 23 3-25 1-23 (176)
167 PRK08629 coproporphyrinogen II 29.2 91 0.002 30.6 4.9 60 157-239 117-176 (433)
168 PF03537 Glyco_hydro_114: Glyc 28.9 60 0.0013 23.3 2.7 21 298-318 36-56 (74)
169 PRK09195 gatY tagatose-bisphos 28.4 4.1E+02 0.0089 24.5 8.7 18 297-314 114-131 (284)
170 PRK08208 coproporphyrinogen II 28.2 1.1E+02 0.0024 29.9 5.2 59 159-239 110-172 (430)
171 PRK13733 conjugal transfer pro 28.2 38 0.00082 28.6 1.7 17 7-23 6-22 (171)
172 TIGR02153 gatD_arch glutamyl-t 27.7 61 0.0013 31.5 3.3 40 42-93 167-211 (404)
173 PHA00407 phage lambda Rz1-like 27.7 66 0.0014 23.3 2.6 20 7-26 36-55 (84)
174 PRK11616 hypothetical protein; 26.9 42 0.00092 26.2 1.6 16 7-22 7-22 (109)
175 PRK08898 coproporphyrinogen II 26.9 1.2E+02 0.0027 29.1 5.3 60 158-239 91-153 (394)
176 PRK10449 heat-inducible protei 26.6 65 0.0014 26.2 2.9 18 7-24 4-21 (140)
177 PRK05835 fructose-bisphosphate 26.3 4.1E+02 0.0089 24.8 8.3 18 297-314 114-131 (307)
178 COG4939 Major membrane immunog 26.2 69 0.0015 25.7 2.7 23 4-26 3-25 (147)
179 PF12957 DUF3846: Domain of un 26.1 1.2E+02 0.0026 22.7 4.1 35 55-94 14-48 (95)
180 PRK09196 fructose-1,6-bisphosp 25.9 3.4E+02 0.0074 25.8 7.8 18 297-314 122-139 (347)
181 cd04724 Tryptophan_synthase_al 25.7 52 0.0011 29.4 2.3 25 57-81 13-37 (242)
182 PRK13399 fructose-1,6-bisphosp 25.2 4.6E+02 0.0099 25.0 8.5 19 297-315 122-140 (347)
183 PF08955 BofC_C: BofC C-termin 24.8 97 0.0021 22.5 3.1 58 79-167 13-70 (75)
184 PRK12737 gatY tagatose-bisphos 24.8 5.2E+02 0.011 23.8 8.7 17 298-314 115-131 (284)
185 TIGR01858 tag_bisphos_ald clas 24.8 5.5E+02 0.012 23.6 8.9 17 298-314 113-129 (282)
186 PF05198 IF3_N: Translation in 24.4 98 0.0021 22.5 3.1 45 41-89 12-56 (76)
187 PF00290 Trp_syntA: Tryptophan 24.1 90 0.0019 28.4 3.5 42 41-82 7-48 (259)
188 PRK10718 RpoE-regulated lipopr 24.0 72 0.0016 27.5 2.6 18 7-24 5-22 (191)
189 PF07107 WI12: Wound-induced p 23.8 46 0.001 26.0 1.4 11 312-322 40-50 (109)
190 TIGR01521 FruBisAldo_II_B fruc 23.7 5.4E+02 0.012 24.5 8.7 18 297-314 120-137 (347)
191 PRK10523 lipoprotein involved 23.6 2E+02 0.0043 25.7 5.5 25 72-97 54-78 (234)
192 PRK10722 hypothetical protein; 23.4 96 0.0021 27.8 3.4 20 7-26 17-36 (247)
193 PRK10802 peptidoglycan-associa 22.9 93 0.002 26.3 3.2 66 157-232 86-151 (173)
194 PF06673 L_lactis_ph-MCP: Lact 22.8 73 0.0016 27.7 2.5 46 50-95 255-301 (347)
195 PF11153 DUF2931: Protein of u 22.7 77 0.0017 27.7 2.8 19 8-26 4-22 (216)
196 cd08586 PI-PLCc_BcPLC_like Cat 22.6 99 0.0021 28.3 3.6 38 57-94 32-69 (279)
197 TIGR01211 ELP3 histone acetylt 22.5 1.3E+02 0.0028 30.3 4.6 47 171-239 191-237 (522)
198 PRK12738 kbaY tagatose-bisphos 22.5 6.2E+02 0.013 23.4 9.0 18 297-314 114-131 (286)
199 PF11839 DUF3359: Protein of u 22.3 75 0.0016 24.3 2.2 14 11-24 10-23 (96)
200 PF05643 DUF799: Putative bact 21.9 90 0.002 27.5 2.9 16 9-24 6-21 (215)
201 PF13344 Hydrolase_6: Haloacid 21.8 3.4E+02 0.0074 20.4 5.9 78 152-252 12-89 (101)
202 PRK12857 fructose-1,6-bisphosp 21.2 6.3E+02 0.014 23.2 8.5 17 298-314 115-131 (284)
203 TIGR00724 urea_amlyse_rel biot 21.2 1.6E+02 0.0035 27.6 4.6 61 78-167 237-297 (314)
204 smart00797 AHS2 Allophanate hy 20.6 1.8E+02 0.0039 26.8 4.8 62 77-167 215-276 (280)
205 cd00945 Aldolase_Class_I Class 20.3 1.9E+02 0.0042 24.0 4.8 35 43-77 48-84 (201)
206 TIGR01004 PulS_OutS lipoprotei 20.1 92 0.002 25.1 2.4 16 9-24 10-25 (128)
207 PF13617 Lipoprotein_19: YnbE- 20.1 82 0.0018 21.8 1.8 16 7-22 3-18 (59)
208 COG3065 Slp Starvation-inducib 20.0 86 0.0019 26.8 2.3 17 10-26 13-29 (191)
No 1
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=3.1e-52 Score=379.87 Aligned_cols=251 Identities=31% Similarity=0.475 Sum_probs=218.6
Q ss_pred CeEEeeCCCCCCCchhHHHHHHHHHHcCC--CEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccc
Q 020686 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGA--DFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNT 121 (322)
Q Consensus 44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~--d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~ 121 (322)
|+||||||++|.+||||++||+.|+++|+ ++||||||+||||++||+||.+|.|+|++.. .|+.|++++.++|+..
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~--~F~~r~~t~~idG~~~ 78 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIAR--VYPKRKKTYSVNGVST 78 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCcc--cccccccccccccccc
Confidence 78999999999999999999999999998 4799999999999999999999999999986 5999999999999999
Q ss_pred ccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHH
Q 020686 122 TGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKF 201 (322)
Q Consensus 122 ~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v 201 (322)
+||.+.++||+||++|++.....+|++.+.+.++||||+|+|+.++. .++.+|+|.+.++.. .+..+++.|
T Consensus 79 ~g~~~~d~TlaELk~L~~~~~~~~r~~~~~g~~~IpTLeEvl~~~~~----~gi~i~ie~~~~~~~-----~gl~~~~~l 149 (299)
T cd08603 79 KGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQYPISTVEDVVTLAKP----EGLWLNVQHDAFYQQ-----HNLSMSSYL 149 (299)
T ss_pred CCceeccCCHHHHhhCCCCCCcccCCcccCCcCCCCCHHHHHHHhHh----cCeEEEEecHHHHHH-----cCCCHHHHH
Confidence 99999999999999999987766788888887799999999999864 567888888887754 567899999
Q ss_pred HHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhc---CCCCeEE-EEeccCccCCCCcccccccccHHHHHHHHh
Q 020686 202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNK---TDSPKIF-LIDDVDILTEDTNQSYSEITSDAYLNYIKE 277 (322)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~---~~~~~v~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (322)
+++|+++| .++||||+...|+++++. ...+.++ |++.... ....+..|..+.+ .++++++
T Consensus 150 ~~~L~~~~-------------~v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~-~~~~~~~y~~~~~--~L~eIa~ 213 (299)
T cd08603 150 LSLSKTVK-------------VDYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDV-EPSTNQTYGSILK--NLTFIKT 213 (299)
T ss_pred HHHHHHcC-------------cEEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCc-CCCCCccHHHHHH--hHHHHHH
Confidence 99999986 489999999999999975 3556775 6655332 2334567887776 6999999
Q ss_pred hccccCCCcceeeec-CCCCCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686 278 YCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIHIGNTTT 321 (322)
Q Consensus 278 ~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~ 321 (322)
||++++||+..++|. +..+......+|+.||++||.||+||+++
T Consensus 214 yAdgig~~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~ 258 (299)
T cd08603 214 FASGILVPKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFAN 258 (299)
T ss_pred HHhhcCCChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeC
Confidence 999999999999987 34556667899999999999999999975
No 2
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=3.1e-50 Score=373.22 Aligned_cols=267 Identities=56% Similarity=0.900 Sum_probs=219.0
Q ss_pred CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (322)
Q Consensus 44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (322)
|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|++...+.|++|++++.++|....|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~~~ 80 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNVTG 80 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCcccCC
Confidence 68999999999999999999999999999999999999999999999999999999998888899999888888888788
Q ss_pred ceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcC----CcceEeeeeCCcccccccccccCcchHHH
Q 020686 124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQ----RVVGIYPEMKNPVFINQHVKWADGKKFED 199 (322)
Q Consensus 124 ~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~----~~~~l~iEiK~~~~~~~~~~~~~~~~~~~ 199 (322)
+.|.++|++||++|+++.+++.+++.+.+..++|||+|+|+.++..+ +.++++||||.+..... +.+..+++
T Consensus 81 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~----~~~~~~~~ 156 (309)
T cd08602 81 WFTEDFTLAELKTLRARQRLPYRDQSYDGQFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNA----PLGLPMED 156 (309)
T ss_pred eeeccCCHHHHhhCccCCcCcccCcccCCCcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhccc----ccCCCHHH
Confidence 78999999999999999887666666666669999999999997542 25899999997654221 13457899
Q ss_pred HHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCC----CcccccccccHHHHHHH
Q 020686 200 KFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTED----TNQSYSEITSDAYLNYI 275 (322)
Q Consensus 200 ~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~----~~~~~~~~~~~~~l~~~ 275 (322)
+++++++++++.+. .++++|||||.++|+++|++...+.++|++.......+ .+..|..+.....++.+
T Consensus 157 ~v~~~l~~~~~~~~-------~~~v~i~SFd~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (309)
T cd08602 157 KLLETLKKYGYTGK-------KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEI 229 (309)
T ss_pred HHHHHHHHcCCCCC-------CCCEEEECCCHHHHHHHHhhhCCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHH
Confidence 99999999987531 14899999999999999998766777777543211111 12345444455567777
Q ss_pred HhhccccCCCcceeeec-CCCCCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686 276 KEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIHIGNTTT 321 (322)
Q Consensus 276 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~ 321 (322)
..++.+++++...+.|. .......++++|+.+|++|++|++||||+
T Consensus 230 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~ 276 (309)
T cd08602 230 ATYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRN 276 (309)
T ss_pred HhhceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecC
Confidence 78888999988777765 33456678899999999999999999997
No 3
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=1.9e-49 Score=366.80 Aligned_cols=255 Identities=29% Similarity=0.482 Sum_probs=203.4
Q ss_pred CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (322)
Q Consensus 44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (322)
|+||||||+++.+||||++||++|+++|+|+||||||+||||++||+||.+|+|+||+.. .|+.|++++.++|...+|
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~--~~~~~~~~~~~~~~~~~g 78 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIAS--VFPKRKKTYVVEGQSTSG 78 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCccccc--ccccccceecccCcccCC
Confidence 689999999999999999999999999999999999999999999999999999999985 688888889999988889
Q ss_pred ceeeccCHHHHccCccccccc----CCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHH
Q 020686 124 FFVVDFTLEELKTLRAKQRYS----FRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFED 199 (322)
Q Consensus 124 ~~i~~~t~~el~~l~~~~~~~----~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~ 199 (322)
+.+.++|++||++|+++.... +|++.+.++++||||+|+|+.++.++ .++++||||.+..... . .+..+++
T Consensus 79 ~~v~d~T~aeL~~l~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~-~~~l~iEiK~~~~~~~---~-~~~~~~~ 153 (302)
T cd08571 79 IFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDNAGKILTLEDFLTLAKPKS-LSGVWINVENAAFLAE---H-KGLLSVD 153 (302)
T ss_pred eeeeeCCHHHHhhCcccccCcccccCCCcccCCCCCcCCHHHHHHhhhccC-CceEEEEccCchhhhh---h-ccccHHH
Confidence 789999999999999865433 35666777679999999999997543 3679999997643211 0 1246889
Q ss_pred HHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcC--CCCeEEEEeccCccCCCCcccccccccHHHHHHHHh
Q 020686 200 KFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKT--DSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKE 277 (322)
Q Consensus 200 ~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (322)
.++++++++++... .++++||||++++|++++++. |.....++.+... .+ .....+..+..
T Consensus 154 ~v~~~l~~~~~~~~-------~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~--~~--------~~~~~l~~~~~ 216 (302)
T cd08571 154 AVLTSLSKAGYDQT-------AKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTE--PD--------TLLSNLTEIKK 216 (302)
T ss_pred HHHHHHHHcCCCCC-------CCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCc--CC--------CChhHHHHHHH
Confidence 99999999998520 148999999999999999998 5544333322110 00 01234677777
Q ss_pred hccccCCCcceeeec-CCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 278 YCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 278 ~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
|+.+++++...+.|. ...+...++++|+.+|++|++|++||||++
T Consensus 217 ~a~~v~~~~~~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~ 262 (302)
T cd08571 217 FASGVLVPKSYIWPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANE 262 (302)
T ss_pred hcCccccChhHeeecCCCCcccCccHHHHHHHHcCCEEEEEEEecC
Confidence 888998877666653 123445567999999999999999999984
No 4
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=6.2e-49 Score=368.54 Aligned_cols=262 Identities=24% Similarity=0.315 Sum_probs=203.2
Q ss_pred CCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCC-CCccccCCCCcccccccccccccCCcc
Q 020686 42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDV-FLDDTTNIADHKEFADRKRTCMVQGVN 120 (322)
Q Consensus 42 ~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~-~l~r~t~~~~~~~~~~~~~~~~~~g~~ 120 (322)
+.+++|||||+++.+||||++||++|+++|||+||+||++||||++||+||. +|+||||+...|+|+.|++++..+|..
T Consensus 15 ~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g~~ 94 (356)
T cd08560 15 KTDFSIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPANA 94 (356)
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccccccc
Confidence 5789999999999999999999999999999999999999999999999996 899999999999999999988777765
Q ss_pred ----cccceeeccCHHHHccCccccc-----------c-----cCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeC
Q 020686 121 ----TTGFFVVDFTLEELKTLRAKQR-----------Y-----SFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMK 180 (322)
Q Consensus 121 ----~~g~~i~~~t~~el~~l~~~~~-----------~-----~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK 180 (322)
.++|++.++|++||++|+.+.. + .+|++.+.+..+||||+|+|++++..+ ++++||||
T Consensus 95 ~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~IPTL~Evl~lv~~~~--v~l~iEiK 172 (356)
T cd08560 95 TKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYATCGTLMTHKESIALFKSLG--VKMTPELK 172 (356)
T ss_pred ccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccCCCCCCCHHHHHHHHHhcC--ceEEEEeC
Confidence 4467899999999999987531 1 134445656679999999999998643 89999999
Q ss_pred CcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCC-e--EEEEeccCccCC
Q 020686 181 NPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-K--IFLIDDVDILTE 257 (322)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~-~--v~l~~~~~~~~~ 257 (322)
.+..+...........+++.++++++++|+.. ++|+||||+++.|++++++.|.. . +++.+... ..
T Consensus 173 ~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~---------~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~--~~ 241 (356)
T cd08560 173 SPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPP---------SRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDD--TA 241 (356)
T ss_pred CCcccccccccccHHHHHHHHHHHHHHcCCCC---------CCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCc--cc
Confidence 87753321000012368999999999999863 48999999999999998876642 2 33333211 00
Q ss_pred CCcccccccccHHHHHHH-HhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686 258 DTNQSYSEITSDAYLNYI-KEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTT 321 (322)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~ 321 (322)
+. .+.. ...++.+ ..++++++|+...+.+........++++|+.||++|++|++|||++
T Consensus 242 ~~--~~~~---~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~WTvr~ 301 (356)
T cd08560 242 DF--PATW---SPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITWTLER 301 (356)
T ss_pred cc--cccH---HHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEEEeec
Confidence 00 1111 1345666 5678899998776665433344578999999999999999999963
No 5
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=9.2e-48 Score=361.79 Aligned_cols=278 Identities=33% Similarity=0.544 Sum_probs=205.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCcccCcCCCCCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEE
Q 020686 9 IPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLI 88 (322)
Q Consensus 9 ~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~V 88 (322)
+.++++.|++||++.. ....+|++|||||+++.+||||++||++|++.|+|+||||||+||||++|
T Consensus 6 ~~~~~~~~~~~~~~~~--------------~~~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lV 71 (355)
T PRK11143 6 LALLLAALLAGSAAAA--------------ADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLV 71 (355)
T ss_pred HHHHHHHHHHHhhHhh--------------hcCCCcEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEE
Confidence 4567788999999832 24678999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccCCCCcccccccccccccCCcccccceeeccCHHHHccCcccccccC-----------CCcccCCCcccc
Q 020686 89 CHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSF-----------RDQQYNGKFPII 157 (322)
Q Consensus 89 v~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~-----------r~~~~~~~~~ip 157 (322)
|+||.+++|+|++.. .|+.+.+. .| ++.|.++|++||++|+++.++.. +.+....+++||
T Consensus 72 v~HD~~l~rtT~~~~--~~~~~~~~---~g----~~~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IP 142 (355)
T PRK11143 72 VLHDHYLDRVTDVAE--RFPDRARK---DG----RYYAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVH 142 (355)
T ss_pred EeCCchhcccCCccc--cccccccc---CC----ceeEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccC
Confidence 999999999999764 45555432 12 34799999999999999876532 112223356999
Q ss_pred CHHHHHHHHHhc----CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhH
Q 020686 158 TFEEYISIALDA----QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTS 233 (322)
Q Consensus 158 tL~e~l~~~~~~----~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~ 233 (322)
||+|+|+.++.. +..++++||||.+..... .+..+++.++++++++|+... .++|+|+||++++
T Consensus 143 TL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~-----~~~~~~~~v~~~l~~~g~~~~-------~~~v~i~SFd~~~ 210 (355)
T PRK11143 143 TFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKVLEVLKKYGYTGK-------DDKVYLQCFDANE 210 (355)
T ss_pred CHHHHHHHHHHhhhhcCCCceeeEeccCcccccc-----cchhHHHHHHHHHHHhCCCCC-------CCCEEEeCCCHHH
Confidence 999999998753 235789999998643211 235689999999999997521 1489999999999
Q ss_pred HHHHhh-cCCC-----CeEEEEeccCccC--------CCCcccccccccHHHHHHHHhhccccCCCcceeeec-CCCCCC
Q 020686 234 LVYISN-KTDS-----PKIFLIDDVDILT--------EDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNYSQ 298 (322)
Q Consensus 234 l~~~~~-~~~~-----~~v~l~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~ 298 (322)
|+++|+ ..|. +.++++....... ......|.....+..+..+..++.++.|....+.+. +..+..
T Consensus 211 L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~ 290 (355)
T PRK11143 211 LKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYNYDWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNI 290 (355)
T ss_pred HHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccccchhhhcChhhHHHHHhhceeecCChhheeeccccCCcc
Confidence 999997 5453 5567764221100 001111222222234556667788888875444332 234455
Q ss_pred CChHHHHHHHHcCCeEEEEeCCC
Q 020686 299 TPTDLVARAHALDLQIHIGNTTT 321 (322)
Q Consensus 299 ~~~~~v~~ah~~Gl~V~vWTvn~ 321 (322)
.++++|+.+|++|++|++||||+
T Consensus 291 ~~~~~v~~ah~~Gl~V~~WTVn~ 313 (355)
T PRK11143 291 KLTGMVKEAHQAKLVVHPYTVRA 313 (355)
T ss_pred ChHHHHHHHHHcCCEEEEEEecc
Confidence 67799999999999999999986
No 6
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=1.4e-47 Score=354.32 Aligned_cols=255 Identities=24% Similarity=0.468 Sum_probs=196.5
Q ss_pred CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (322)
Q Consensus 44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (322)
|.||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|++.. +.|+.|++++ +++...+|
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~-~~~~~~~~~~-~~~~~~~~ 78 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVAT-SKFSNRATTV-PEIGSTSG 78 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCc-cccccccccc-ccccccCc
Confidence 689999999999999999999999999999999999999999999999999999999986 5788887764 34444667
Q ss_pred ceeeccCHHHHccCccccccc------CCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchH
Q 020686 124 FFVVDFTLEELKTLRAKQRYS------FRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKF 197 (322)
Q Consensus 124 ~~i~~~t~~el~~l~~~~~~~------~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~ 197 (322)
+.+.++|++||++|+++...+ +|.+.+.+..+||||+|+|+.++..+ .+++++|||.+...... .+..+
T Consensus 79 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~-~~~l~iEiK~~~~~~~~----~~~~~ 153 (300)
T cd08604 79 IFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLSDFLDLAKNKS-LSGVLINVENAAYLAEK----KGLDV 153 (300)
T ss_pred eeeecCcHHHHhhCccCCcCcccccCcCCCcccCCCCCCCCHHHHHHHHHhcC-CceEEEEeeccchhhhc----cCccH
Confidence 789999999999999875322 24455666579999999999997643 24799999976432110 12358
Q ss_pred HHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHh
Q 020686 198 EDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKE 277 (322)
Q Consensus 198 ~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (322)
++.++++++++++.... .++|+||||++++|++++++...+.++++..... + + .+..++.+..
T Consensus 154 ~~~v~~~l~~~~~~~~~------~~~v~i~SF~~~~L~~~~~~~~~~~~~l~~~~~~---~----~----~~~~~~~~~~ 216 (300)
T cd08604 154 VDAVLDALTNAGYDNQT------AQKVLIQSTDSSVLAAFKKQISYERVYVVDETIR---D----A----SDSSIEEIKK 216 (300)
T ss_pred HHHHHHHHHHcCCCCCC------CCeEEEEcCCHHHHHHHHhccCCceEEEecCccc---c----c----ChhHHHHHHH
Confidence 99999999999985310 1389999999999999999885566666643210 0 0 1234566667
Q ss_pred hccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 278 YCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 278 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++.+++++...+.|....+...++++|+.+|++|++|++||||++
T Consensus 217 ~a~~v~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~vwTvn~~ 261 (300)
T cd08604 217 FADAVVIDRGSVFPVSTSFLTRQTNVVEKLQSANLTVYVEVLRNE 261 (300)
T ss_pred hccEEEeChhhcccccCCcccCchHHHHHHHHCCCEEEEEEecCC
Confidence 787888776665543222222345999999999999999999974
No 7
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=2e-47 Score=355.79 Aligned_cols=258 Identities=35% Similarity=0.591 Sum_probs=194.8
Q ss_pred CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (322)
Q Consensus 44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (322)
|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|++.. .|+.++++ +| +
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~--~~~~~~~~---~g----~ 71 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAE--KFPDRKRK---DG----R 71 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCccc--cccccccc---CC----c
Confidence 689999999999999999999999999999999999999999999999999999999874 45555432 12 2
Q ss_pred ceeeccCHHHHccCcccccccCC-----------CcccCCCccccCHHHHHHHHHhc----CCcceEeeeeCCccccccc
Q 020686 124 FFVVDFTLEELKTLRAKQRYSFR-----------DQQYNGKFPIITFEEYISIALDA----QRVVGIYPEMKNPVFINQH 188 (322)
Q Consensus 124 ~~i~~~t~~el~~l~~~~~~~~r-----------~~~~~~~~~iptL~e~l~~~~~~----~~~~~l~iEiK~~~~~~~~ 188 (322)
+.|.++|++||++|+++.+|..+ .+...+..+||||+|+|+.++.. +..++++||||.+.....
T Consensus 72 ~~v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~- 150 (318)
T cd08600 72 YYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQ- 150 (318)
T ss_pred eeEeeCcHHHHhhCCCCCCcccccccccccccccCcccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhhh-
Confidence 47999999999999999876422 11112346999999999998753 235889999997643211
Q ss_pred ccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhh-cCC-----CCeEEEEeccCccCC-----
Q 020686 189 VKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISN-KTD-----SPKIFLIDDVDILTE----- 257 (322)
Q Consensus 189 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~-~~~-----~~~v~l~~~~~~~~~----- 257 (322)
.+..+++.++++++++++.+. ..+|+||||++++|+++|+ +.| .+.++|+........
T Consensus 151 ----~~~~~~~~v~~~l~~~~~~~~-------~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~ 219 (318)
T cd08600 151 ----EGKDIAAATLEVLKKYGYTSK-------NDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDP 219 (318)
T ss_pred ----ccccHHHHHHHHHHHcCCCCC-------CCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCccccccc
Confidence 234689999999999998531 1479999999999999996 655 466677642211100
Q ss_pred --CCcccccccccHHHHHHHHhhccccCCCcceeeec-CCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 258 --DTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 258 --~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
.....|..+.++..+..++.+|.+++++...+.+. ...+...++++|+.+|++|+.|++||||++
T Consensus 220 ~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~ 287 (318)
T cd08600 220 GGWVNYDYDWMFTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKD 287 (318)
T ss_pred CCccccchhhhcCHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCC
Confidence 01123444434445777788899999887655442 112345688999999999999999999985
No 8
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=4.7e-47 Score=350.89 Aligned_cols=257 Identities=48% Similarity=0.760 Sum_probs=189.0
Q ss_pred CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (322)
Q Consensus 44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (322)
|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|.|+|++.....+. |....|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~---------~~~~~~ 71 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR---------GRKDTG 71 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCcccccccc---------ccCCCC
Confidence 78999999999999999999999999999999999999999999999999999999987422221 222224
Q ss_pred ceeeccCHHHHccCcccccc----cCCCcccCCCccccCHHHHHHHHHhcC----CcceEeeeeCCcccccccccccCcc
Q 020686 124 FFVVDFTLEELKTLRAKQRY----SFRDQQYNGKFPIITFEEYISIALDAQ----RVVGIYPEMKNPVFINQHVKWADGK 195 (322)
Q Consensus 124 ~~i~~~t~~el~~l~~~~~~----~~r~~~~~~~~~iptL~e~l~~~~~~~----~~~~l~iEiK~~~~~~~~~~~~~~~ 195 (322)
..|.++|++||++++++.|+ +.|.+.+..++++|||+|+|+.++.++ +.++++||||.+..... .+.
T Consensus 72 ~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~-----~~~ 146 (296)
T cd08559 72 YFVIDFTLAELKTLRAGSWFNQRYPERAPSYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQ-----EGP 146 (296)
T ss_pred eeeecCcHHHHhcCCCCCcccccccccCccccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhhh-----cCC
Confidence 48999999999999998654 222222334569999999999997632 25899999998653211 235
Q ss_pred hHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHH
Q 020686 196 KFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNY 274 (322)
Q Consensus 196 ~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 274 (322)
.+++.++++++++++... .++++|+||++++|+++|++.|. +.++|+.............|..+.....++.
T Consensus 147 ~~~~~v~~~l~~~~~~~~-------~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (296)
T cd08559 147 DIEEKLLEVLKKYGYTGK-------NDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKE 219 (296)
T ss_pred CHHHHHHHHHHHcCCCCC-------CCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHH
Confidence 789999999999987520 13899999999999999998764 5666665432211111223333444445666
Q ss_pred HHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686 275 IKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTT 321 (322)
Q Consensus 275 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~ 321 (322)
++.++.++++....+.+........++++|+.+|++|++|++||||+
T Consensus 220 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~ 266 (296)
T cd08559 220 IAKYADGIGPWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRN 266 (296)
T ss_pred HHHHhhhhCCCHHhccccccccccCchHHHHHHHHcCCEEEEEEecC
Confidence 65567777765433321111223445899999999999999999998
No 9
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=4.9e-45 Score=330.01 Aligned_cols=220 Identities=20% Similarity=0.235 Sum_probs=166.2
Q ss_pred CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (322)
Q Consensus 43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (322)
+|.||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|++.. .++.++ +
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g--~~~~~~----------~ 68 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVAD--VFPERA----------H 68 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCc--cccccc----------c
Confidence 4789999999999999999999999999999999999999999999999999999999873 111111 1
Q ss_pred cceeeccCHHHHccCcccccccCCCc-------------ccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccc
Q 020686 123 GFFVVDFTLEELKTLRAKQRYSFRDQ-------------QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV 189 (322)
Q Consensus 123 g~~i~~~t~~el~~l~~~~~~~~r~~-------------~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~ 189 (322)
+ .|.++|++||++|+++.||..+++ .+.+ ++||||+|+|+.+++.+ +.++||||.+....
T Consensus 69 ~-~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~-~~IPtL~evl~~~~~~~--~~l~iEiK~~~~~~--- 141 (252)
T cd08574 69 E-RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN-QSIPSLAELLRLAKKHN--KSVIFDLRRPPPNH--- 141 (252)
T ss_pred c-chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC-CCCCCHHHHHHHHHHcC--CeEEEEecCCcccC---
Confidence 2 689999999999999987743221 3344 69999999999998644 78999999754210
Q ss_pred cccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccH
Q 020686 190 KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSD 269 (322)
Q Consensus 190 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 269 (322)
+....+++.++++++++++.. +++++||+.. ++++|++.|.....+.....
T Consensus 142 --~~~~~~~~~v~~~l~~~~~~~----------~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~~---------------- 192 (252)
T cd08574 142 --PYYQSYVNITLDTILASGIPQ----------HQVFWLPDEY-RALVRKVAPGFQQVSGRKLP---------------- 192 (252)
T ss_pred --ccHHHHHHHHHHHHHHcCCCc----------ccEEEccHHH-HHHHHHHCCCCeEeeccccc----------------
Confidence 012368899999999998753 5566566654 78999988776554321110
Q ss_pred HHHHHHHh-hccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 270 AYLNYIKE-YCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 270 ~~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
...+.. .+..+++ ++..+++++|+.+|++|++|++||||+|
T Consensus 193 --~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~g~~v~~WTVn~~ 234 (252)
T cd08574 193 --VESLRENGISRLNL----------EYSQLSAQEIREYSKANISVNLYVVNEP 234 (252)
T ss_pred --hHHHHhcCCeEEcc----------CcccCCHHHHHHHHHCCCEEEEEccCCH
Confidence 111111 1222222 5667799999999999999999999985
No 10
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=5.1e-45 Score=330.23 Aligned_cols=227 Identities=20% Similarity=0.200 Sum_probs=165.0
Q ss_pred CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (322)
Q Consensus 44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (322)
|++|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. |
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~~~--------------------g 60 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTNGS--------------------G 60 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccCCC--------------------C
Confidence 68999999999999999999999999999999999999999999999999999999987 4
Q ss_pred ceeeccCHHHHccCcccccccCC-CcccCC-CccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHH
Q 020686 124 FFVVDFTLEELKTLRAKQRYSFR-DQQYNG-KFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKF 201 (322)
Q Consensus 124 ~~i~~~t~~el~~l~~~~~~~~r-~~~~~~-~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v 201 (322)
.|.++|++||++|+++.++... ...|.+ ..+||||+|+|+.+.. ..++||+|.+. ...+++.+
T Consensus 61 -~v~~~t~~el~~ld~g~~~~~~~~~~~~~~~~~iPtL~evl~~~~~----~~l~iEiK~~~----------~~~~~~~v 125 (263)
T cd08580 61 -AVSAYTAAQLATLNAGYNFKPEGGYPYRGKPVGIPTLEQVLRAFPD----TPFILDMKSLP----------ADPQAKAV 125 (263)
T ss_pred -ChhhCcHHHHhcCCCccccccccCcccCCCCCcCccHHHHHHhhcC----CeEEEEECCCC----------cHHHHHHH
Confidence 7999999999999999876321 112332 3589999999999853 67999999753 13688999
Q ss_pred HHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-------CeEEEEeccCccC-CCCc---ccccccccHH
Q 020686 202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-------PKIFLIDDVDILT-EDTN---QSYSEITSDA 270 (322)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-------~~v~l~~~~~~~~-~~~~---~~~~~~~~~~ 270 (322)
+++++++++.. +++|+||+++.|++++++.|. ....++....... .... .....+....
T Consensus 126 ~~~i~~~~~~~----------~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (263)
T cd08580 126 ARVLERENAWS----------RVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRR 195 (263)
T ss_pred HHHHHhcCCCC----------CEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccc
Confidence 99999999864 899999999999999998773 1111111000000 0000 0000000000
Q ss_pred HHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHc-CCeEEEEeCCCC
Q 020686 271 YLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHAL-DLQIHIGNTTTG 322 (322)
Q Consensus 271 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~-Gl~V~vWTvn~~ 322 (322)
.+.....++.+ . ..+ ..++..+++++|+.+|++ |++|++||||+|
T Consensus 196 ~~~~~~~~~~~--~--~~~---~~~~~l~t~~~V~~~h~~~gl~V~~WTVN~~ 241 (263)
T cd08580 196 KVTVVETFTLG--E--GRS---PVQATLWTPAAVDCFRRNSKVKIVLFGINTA 241 (263)
T ss_pred cchheeeeccc--c--ccc---ccccccCCHHHHHHHHhcCCcEEEEEEeCCH
Confidence 01111111111 1 111 124567899999999999 999999999986
No 11
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1e-43 Score=322.41 Aligned_cols=220 Identities=37% Similarity=0.494 Sum_probs=171.0
Q ss_pred eEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCC--CCcccccccccccccCCcccc
Q 020686 45 YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNI--ADHKEFADRKRTCMVQGVNTT 122 (322)
Q Consensus 45 ~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~--~~~~~~~~~~~~~~~~g~~~~ 122 (322)
+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|++ .
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~-------------------- 61 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIERP-------------------- 61 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccCCCCC--------------------
Confidence 589999999999999999999999999999999999999999999999999999998 5
Q ss_pred cceeeccCHHHHccCcccccccC-----CCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchH
Q 020686 123 GFFVVDFTLEELKTLRAKQRYSF-----RDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKF 197 (322)
Q Consensus 123 g~~i~~~t~~el~~l~~~~~~~~-----r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~ 197 (322)
| .|.++|++||++++.+.++.. ++..+.+ +++|||+|+|+.++. ..+++||+|.+.. ...+
T Consensus 62 g-~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~-~~iptL~evl~~~~~---~~~l~IEiK~~~~---------~~~~ 127 (256)
T cd08601 62 G-PVKDYTLAEIKQLDAGSWFNKAYPEYARESYSG-LKVPTLEEVIERYGG---RANYYIETKSPDL---------YPGM 127 (256)
T ss_pred c-eeecCcHHHHHhcCCCccccccCccccccccCC-ccCCCHHHHHHHhcc---CceEEEEeeCCCC---------CCCH
Confidence 4 799999999999998776531 1222333 699999999999864 3689999997532 1357
Q ss_pred HHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHH
Q 020686 198 EDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIK 276 (322)
Q Consensus 198 ~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 276 (322)
++.++++++++++..+.. ..++++|+||+++++++++++.|. +.+++++..... . .....++.+.
T Consensus 128 ~~~v~~~l~~~~~~~~~~----~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-----~-----~~~~~~~~~~ 193 (256)
T cd08601 128 EEKLLATLDKYGLLTDNL----KNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGA-----E-----TYDKWLDEIK 193 (256)
T ss_pred HHHHHHHHHHcCCCcccC----CCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCccc-----c-----cchhHHHHHH
Confidence 899999999998762100 014899999999999999998664 556665432110 0 1112344444
Q ss_pred hhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 277 EYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 277 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
.++.++++ ++..+++++++.+|++|++|++||||++
T Consensus 194 ~~~~~~~~----------~~~~~~~~~v~~~~~~g~~v~~wTvn~~ 229 (256)
T cd08601 194 EYAIGIGP----------SIADADPWMVHLIHKKGLLVHPYTVNEK 229 (256)
T ss_pred hcCeEeCC----------chhhcCHHHHHHHHHCCCEEEEEecCCH
Confidence 44445444 3445689999999999999999999984
No 12
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=2.9e-43 Score=318.17 Aligned_cols=212 Identities=23% Similarity=0.252 Sum_probs=160.4
Q ss_pred CCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccc
Q 020686 42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNT 121 (322)
Q Consensus 42 ~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~ 121 (322)
..|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.++.|+|++.
T Consensus 6 ~~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~------------------- 66 (249)
T PRK09454 6 PYPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSNGW------------------- 66 (249)
T ss_pred CCCeEEECCCCCCCCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCCCC-------------------
Confidence 3589999999999999999999999999999999999999999999999999999999987
Q ss_pred ccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHH
Q 020686 122 TGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKF 201 (322)
Q Consensus 122 ~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v 201 (322)
| .|.++||+||++++++.++. ..+.+ +++|||+|+|+.+...+ +.++||+|..... .....+.+
T Consensus 67 -~-~v~~~t~~el~~l~~~~~~~---~~~~~-~~iPtL~evl~~~~~~~--~~l~iEiK~~~~~--------~~~~~~~v 130 (249)
T PRK09454 67 -G-VAGELTWQDLAQLDAGSWFS---AAFAG-EPLPTLSQVAARCRAHG--MAANIEIKPTTGR--------EAETGRVV 130 (249)
T ss_pred -C-chhhCCHHHHHhcCCCCccC---CCCCC-CcCCCHHHHHHHHHhcC--CEEEEEECCCCCc--------chhHHHHH
Confidence 4 69999999999999987652 33444 58999999999987543 7899999964311 11233333
Q ss_pred HHHHHHc--CCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHHhh
Q 020686 202 VDTLKKY--GYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY 278 (322)
Q Consensus 202 ~~~l~~~--~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (322)
..+++.. +.. ++++|+||++.+|+++|++.|. +..++..... . .....+...
T Consensus 131 ~~~~~~~~~~~~----------~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~-------~--------~~~~~~~~~ 185 (249)
T PRK09454 131 ALAARALWAGAA----------VPPLLSSFSEDALEAARQAAPELPRGLLLDEWP-------D--------DWLELTRRL 185 (249)
T ss_pred HHHHHHHhcCCC----------CCEEEEeCCHHHHHHHHHhCCCCcEEEEecccc-------c--------cHHHHHHhc
Confidence 3334443 222 3899999999999999998775 4555543211 0 011222221
Q ss_pred ccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 279 CVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 279 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
+. ..+.+ ++..+++++++.+|++|++|++||||+|
T Consensus 186 ----~~--~~~~~---~~~~~~~~~v~~~~~~g~~v~~WTvn~~ 220 (249)
T PRK09454 186 ----GC--VSLHL---NHKLLDEARVAALKAAGLRILVYTVNDP 220 (249)
T ss_pred ----CC--eEEec---ccccCCHHHHHHHHHCCCEEEEEeCCCH
Confidence 11 11222 4566799999999999999999999985
No 13
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=2.3e-43 Score=320.01 Aligned_cols=226 Identities=24% Similarity=0.291 Sum_probs=168.0
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+++|+|++. | .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~--------------------g-~ 59 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDGT--------------------G-L 59 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecCCC--------------------c-e
Confidence 589999999999999999999999999999999999999999999999999999987 4 7
Q ss_pred eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (322)
|.++||+||++++++.+++.. +.+.+ +++|||+|+|+.+++.+ +.++||+|.+. ..+++.+++++
T Consensus 60 v~~~t~~el~~l~~~~~~~~~-~~~~~-~~iptL~evl~~~~~~~--~~l~iEiK~~~-----------~~~~~~v~~~l 124 (258)
T cd08573 60 VAELTWEELRKLNAAAKHRLS-SRFPG-EKIPTLEEAVKECLENN--LRMIFDVKSNS-----------SKLVDALKNLF 124 (258)
T ss_pred EecCcHHHHhhCCCCCCCCCc-cccCC-CCCCCHHHHHHHHHhcC--CEEEEEeCCCc-----------HHHHHHHHHHH
Confidence 999999999999998776432 23444 59999999999997543 78999999753 25788999999
Q ss_pred HHcC-CCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEecc-CccCCC---Ccccc--cccccHHHHHHHHhh
Q 020686 206 KKYG-YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDV-DILTED---TNQSY--SEITSDAYLNYIKEY 278 (322)
Q Consensus 206 ~~~~-~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~-~~~~~~---~~~~~--~~~~~~~~l~~~~~~ 278 (322)
++++ +. ++++++||++.+++++|+..|...+.++... ...... ....+ +.......+..+..+
T Consensus 125 ~~~~~~~----------~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (258)
T cd08573 125 KKYPGLY----------DKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEW 194 (258)
T ss_pred HHCCCcc----------CCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHH
Confidence 9998 65 3899999999999999999876554444321 100000 00000 000000011111111
Q ss_pred c------cccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 279 C------VGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 279 ~------~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
. ..+++ ..+.+ ++..+++++|+.+|++|++|++||||+|
T Consensus 195 ~~~~~~~~~~~~--~~v~~---~~~~~~~~~v~~~~~~G~~v~vWTVn~~ 239 (258)
T cd08573 195 SLHSWLPYFLGV--SALLI---HKDDISSAYVRYWRARGIRVIAWTVNTP 239 (258)
T ss_pred HHHhhhhhhcCe--eEEEe---chHhcCHHHHHHHHHCCCEEEEEecCCH
Confidence 0 01111 12222 5667899999999999999999999986
No 14
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=3.4e-43 Score=313.69 Aligned_cols=210 Identities=25% Similarity=0.320 Sum_probs=165.2
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.++.|+|++. | .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~--------------------~-~ 59 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTNGS--------------------G-A 59 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccCCC--------------------c-e
Confidence 689999999999999999999999999999999999999999999999999999987 4 7
Q ss_pred eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (322)
|+++|++||++++.+.++ .+.+.+ .++|||+|+|+.+++.+ +.+++|+|.+.. ....+++.+++++
T Consensus 60 i~~lt~~el~~l~~~~~~---~~~~~~-~~iptl~evl~~~~~~~--~~l~iEiK~~~~--------~~~~~~~~v~~~l 125 (229)
T cd08562 60 VTELTWAELAQLDAGSWF---SPEFAG-EPIPTLADVLELARELG--LGLNLEIKPDPG--------DEALTARVVAAAL 125 (229)
T ss_pred eecCcHHHHhhcCCCccc---CCCCCC-CCCCCHHHHHHHHHhcC--CEEEEEECCCCC--------ccHHHHHHHHHHH
Confidence 999999999999987643 233343 59999999999997544 889999997542 1245788999999
Q ss_pred HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCCC
Q 020686 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW 285 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 285 (322)
++++... +|++++||+++++++++++.|...+.++..... . ...+.+... +.
T Consensus 126 ~~~~~~~---------~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-----~---------~~~~~~~~~----~~- 177 (229)
T cd08562 126 RELWPHA---------SKLLLSSFSLEALRAARRAAPELPLGLLFDTLP-----A---------DWLELLAAL----GA- 177 (229)
T ss_pred HHhcCCc---------CCEEEECCCHHHHHHHHHhCCCCcEEEEecCCC-----c---------CHHHHHHHc----CC-
Confidence 9998742 389999999999999999877544444322110 0 011222221 11
Q ss_pred cceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 286 KDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
..+.+ ++..+++++++.+|++|++|++||||++
T Consensus 178 -~~~~~---~~~~~~~~~v~~~~~~g~~v~~wTvn~~ 210 (229)
T cd08562 178 -VSIHL---NYRGLTEEQVKALKDAGYKLLVYTVNDP 210 (229)
T ss_pred -eEEec---ChhhCCHHHHHHHHHCCCEEEEEeCCCH
Confidence 11221 4556789999999999999999999984
No 15
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=4.2e-43 Score=325.07 Aligned_cols=234 Identities=18% Similarity=0.174 Sum_probs=167.1
Q ss_pred CCCCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccC
Q 020686 38 PLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQ 117 (322)
Q Consensus 38 ~~~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~ 117 (322)
......|.+|||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|++.
T Consensus 21 ~~~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~--------------- 85 (300)
T cd08612 21 KKSPFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCGVD--------------- 85 (300)
T ss_pred cccCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCCCC---------------
Confidence 45578899999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccccceeeccCHHHHccCcccccc-----cCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCccccccccccc
Q 020686 118 GVNTTGFFVVDFTLEELKTLRAKQRY-----SFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWA 192 (322)
Q Consensus 118 g~~~~g~~i~~~t~~el~~l~~~~~~-----~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~ 192 (322)
| .|.++|++||++++.+... .+++..+.+ ++||||+|+|+.+. .+.++||||.+.
T Consensus 86 -----g-~V~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~g-~~IPtL~EvL~~~~----~~~lnIEiK~~~--------- 145 (300)
T cd08612 86 -----K-LVSDLNYADLPPYLEKLEVTFSPGDYCVPKGSD-RRIPLLEEVFEAFP----DTPINIDIKVEN--------- 145 (300)
T ss_pred -----c-ccccCCHHHHhhccccccccccCCccccccCCC-CCCCCHHHHHHhCC----CCeEEEEECCCc---------
Confidence 4 7999999999999543211 112234444 59999999999873 268999999753
Q ss_pred CcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccC-----------ccCCCCcc
Q 020686 193 DGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVD-----------ILTEDTNQ 261 (322)
Q Consensus 193 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~-----------~~~~~~~~ 261 (322)
..+++.++++++++++.. +++|+||++++|++++++.|.....++.... ........
T Consensus 146 --~~~~~~v~~~i~~~~~~~----------~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (300)
T cd08612 146 --DELIKKVSDLVRKYKRED----------ITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKE 213 (300)
T ss_pred --hHHHHHHHHHHHHcCCCC----------cEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCcc
Confidence 258899999999999764 8999999999999999998765544422110 00000000
Q ss_pred cccccccHHHHHHHHhhccc--cCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 262 SYSEITSDAYLNYIKEYCVG--IGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
........ ......+... .......+++ .++..+++++|+.+|++|++|++||||+|
T Consensus 214 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~G~~v~vWTVNd~ 272 (300)
T cd08612 214 SFLEIPMP--SIFLKTYFPKSMSRLNRFVLFL--IDWLLMRPSLFRHLQKRGIQVYGWVLNDE 272 (300)
T ss_pred ccccccch--hhhhhhcccccccccccceecc--cccccCCHHHHHHHHHCCCEEEEeecCCH
Confidence 00000000 0000000000 0000001111 13556799999999999999999999985
No 16
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=4.8e-43 Score=312.70 Aligned_cols=209 Identities=22% Similarity=0.268 Sum_probs=153.0
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|++. | .
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~--------------------~-~ 59 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTGVE--------------------G-L 59 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccCCC--------------------c-e
Confidence 589999999999999999999999999999999999999999999999999999987 4 7
Q ss_pred eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (322)
|.++|++||++++.+....+ +..+.+ ++||||+|+|+.++++ ..++++||+|.+... ...+.+.+.+++
T Consensus 60 v~~~t~~el~~l~~~~~~~~-~~~~~~-~~iptL~evl~~~~~~-~~~~l~iEiK~~~~~--------~~~~~~~v~~~~ 128 (229)
T cd08581 60 LHELEDAELDSLRVAEPARF-GSRFAG-EPLPSLAAVVQWLAQH-PQVTLFVEIKTESLD--------RFGLERVVDKVL 128 (229)
T ss_pred eccCCHHHHhhcccccCccc-ccccCC-ccCCCHHHHHHHHhhC-CCceEEEEecCCccc--------ccchhHHHHHHH
Confidence 99999999999976432211 234444 5999999999998753 247899999976421 122344444555
Q ss_pred HHcC-CCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCC
Q 020686 206 KKYG-YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGP 284 (322)
Q Consensus 206 ~~~~-~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 284 (322)
++.+ .. ++++|+||++++|+++|++.+.+..+++.... ...... +..+++
T Consensus 129 ~~~~~~~----------~~~~i~SF~~~~l~~~r~~~~~~~~~l~~~~~---------------~~~~~~----~~~~~~ 179 (229)
T cd08581 129 RALPAVA----------AQRVLISFDYDLLALAKQQGGPRTGWVLPDWD---------------DASLAE----ADELQP 179 (229)
T ss_pred HHHHhcc----------CCeEEEeCCHHHHHHHHhcCCCCeEEEeccCC---------------hHHHHH----HHhhCC
Confidence 5543 32 48999999999999999994344555542210 001111 112222
Q ss_pred CcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 285 WKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
. .+.+ ++.. . ..++.+|++|++|++||||+|
T Consensus 180 ~--~~~~---~~~~-~-~~v~~~~~~G~~v~vWTVn~~ 210 (229)
T cd08581 180 D--YLFC---DKNL-L-PDTGDLWAGTWKWVIYEVNEP 210 (229)
T ss_pred C--EEec---cccc-C-hhhHHHHhCCceEEEEEcCCH
Confidence 2 2222 2222 2 458899999999999999986
No 17
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=4.5e-43 Score=312.57 Aligned_cols=203 Identities=24% Similarity=0.281 Sum_probs=157.0
Q ss_pred eEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccc
Q 020686 45 YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGF 124 (322)
Q Consensus 45 ~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~ 124 (322)
++|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. |
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~--------------------g- 59 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGGVD--------------------L- 59 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCCCC--------------------c-
Confidence 4799999999999999999999999999999999999999999999999999999987 4
Q ss_pred eeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHH
Q 020686 125 FVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDT 204 (322)
Q Consensus 125 ~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~ 204 (322)
.|.++|++||++++.+ ++++|||+|+|+.+.+ ...++||+|.+ ..++.++++
T Consensus 60 ~v~~~t~~eL~~l~~~------------g~~iPtL~evl~~~~~---~~~l~iEiK~~-------------~~~~~~~~~ 111 (226)
T cd08568 60 KVKELTYKELKKLHPG------------GELIPTLEEVFRALPN---DAIINVEIKDI-------------DAVEPVLEI 111 (226)
T ss_pred eeecCCHHHHhhCCCC------------CCcCCCHHHHHHhcCC---CcEEEEEECCc-------------cHHHHHHHH
Confidence 7999999999999874 2589999999998843 36899999963 246789999
Q ss_pred HHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeE-EEEeccCccCCCCcccccccccHHHHHHHHh-hcccc
Q 020686 205 LKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKI-FLIDDVDILTEDTNQSYSEITSDAYLNYIKE-YCVGI 282 (322)
Q Consensus 205 l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~i 282 (322)
++++++.+ +++++||+++.|+++|++.|...+ ++...... . + . ..+.... .+..+
T Consensus 112 l~~~~~~~----------~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~-----~--~---~---~~~~~~~~~~~~~ 168 (226)
T cd08568 112 VEKFNALD----------RVIFSSFNHDALRELRKLDPDAKVGLLIGEEEE-----G--F---S---IPELHEKLKLYSL 168 (226)
T ss_pred HHHcCCCC----------cEEEEECCHHHHHHHHHhCCCCcEEEEeecccc-----c--c---C---HHHHHHhcCCcEe
Confidence 99998754 899999999999999999776444 44432210 0 0 0 0111111 12223
Q ss_pred CCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 283 GPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
.+....+ . ......++++++.+|++|++|++||||++
T Consensus 169 ~~~~~~~-~--~~~~~~~~~~v~~~~~~G~~v~~WTvn~~ 205 (226)
T cd08568 169 HVPIDAI-G--YIGFEKFVELLRLLRKLGLKIVLWTVNDP 205 (226)
T ss_pred ccchhhh-c--cccccccHHHHHHHHHCCCEEEEEcCCCH
Confidence 3221111 0 00122369999999999999999999985
No 18
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=6.4e-43 Score=323.61 Aligned_cols=224 Identities=18% Similarity=0.222 Sum_probs=168.0
Q ss_pred CCCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCC
Q 020686 39 LQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQG 118 (322)
Q Consensus 39 ~~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g 118 (322)
..+++|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.. .++.+++
T Consensus 18 ~~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~--~~~~~~~------ 89 (316)
T cd08610 18 TLGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGE--VQPESAC------ 89 (316)
T ss_pred ccCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCC--ccccccc------
Confidence 44677899999999999999999999999999999999999999999999999999999999863 2443322
Q ss_pred cccccceeeccCHHHHccCcccccccCC------------C-cccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccc
Q 020686 119 VNTTGFFVVDFTLEELKTLRAKQRYSFR------------D-QQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFI 185 (322)
Q Consensus 119 ~~~~g~~i~~~t~~el~~l~~~~~~~~r------------~-~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~ 185 (322)
| .+.++|++||++++++.||... . ..+.+ ++||||+|+|+.+++.+ ..++||||.+...
T Consensus 90 ----~-~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~-e~IPTLeEvL~~~~~~~--~~l~IEIK~~~~~ 161 (316)
T cd08610 90 ----E-NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN-QSIPKLSNFLRLAEKEN--KLVIFDLYRPPPK 161 (316)
T ss_pred ----c-chhhCCHHHHhhCCCCCccCcccccccccccccccccccCC-CCCCCHHHHHHHhHhcC--ceEEEEeCCCccc
Confidence 3 6999999999999999876311 1 12233 69999999999997543 7899999965311
Q ss_pred cccccccCcchHHHHHHHHH-HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCccccc
Q 020686 186 NQHVKWADGKKFEDKFVDTL-KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYS 264 (322)
Q Consensus 186 ~~~~~~~~~~~~~~~v~~~l-~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~ 264 (322)
. +....+++.+++.+ +++++.. ++++ ||+...++++++..|.....+....
T Consensus 162 ~-----~~~~~~~~~v~~~i~~~~~~~~----------~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~------------ 213 (316)
T cd08610 162 H-----PYRHTWIRRVLEVILNEVGIEQ----------HLVL-WLPAHDRQYVQSVAPGFKQHVGRKV------------ 213 (316)
T ss_pred C-----cchhHHHHHHHHHHHHHcCCCC----------CEEE-EcCHHHHHHHHHHCcchhhhhcccc------------
Confidence 1 01124778888886 6778753 5666 5889999999998776443221100
Q ss_pred ccccHHHHHHHHh-hccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 265 EITSDAYLNYIKE-YCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 265 ~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
. ...+.. .+.+ +.+ ++..+++++|+.+|++|++|++||||+|
T Consensus 214 ---~---~~~l~~~~~~~-------l~~---~~~~l~~~~v~~a~~~Gl~V~vWTVNd~ 256 (316)
T cd08610 214 ---P---IETLLKNNISI-------LNL---AYKKLFSNDIRDYKAANIHTNVYVINEP 256 (316)
T ss_pred ---c---HHHHHHcCCeE-------Ecc---chhhCCHHHHHHHHHCCCEEEEECCCCH
Confidence 0 111211 1222 222 5667799999999999999999999986
No 19
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=9e-43 Score=322.75 Aligned_cols=218 Identities=21% Similarity=0.211 Sum_probs=163.1
Q ss_pred CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (322)
Q Consensus 43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (322)
.|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|++.. .++++.
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g--~~~~~~----------- 92 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKD--VFPGRD----------- 92 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCCC--Cccccc-----------
Confidence 5799999999999999999999999999999999999999999999999999999999862 010000
Q ss_pred cceeeccCHHHHccCcccccccCCCc-------------ccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccc
Q 020686 123 GFFVVDFTLEELKTLRAKQRYSFRDQ-------------QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV 189 (322)
Q Consensus 123 g~~i~~~t~~el~~l~~~~~~~~r~~-------------~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~ 189 (322)
.+.|.++|++||++++++.||..+.+ .+. +++||||+|+|+.+++++ +.++||||.+....
T Consensus 93 ~~~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~~--~~l~IEIK~~~~~~--- 166 (315)
T cd08609 93 AAGSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREAD-NQTVPSLSELLDLAKKHN--VSIMFDLRNENNSH--- 166 (315)
T ss_pred cccHhhCCHHHHhhCCCCcccCcccccccccccccccccccC-CCCCCCHHHHHHHHHhcC--CEEEEEeCCCCCCC---
Confidence 01499999999999999987643211 123 369999999999997644 77999999753100
Q ss_pred cccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccH
Q 020686 190 KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSD 269 (322)
Q Consensus 190 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 269 (322)
.....+++.+++.++++++.. +++++ |+...+++++++.|.....+...
T Consensus 167 --~~~~~f~~~vl~~i~~~~~~~---------~~v~~--~~~~~l~~~~~~~P~~~~~~~~~------------------ 215 (315)
T cd08609 167 --VFYSSFVFYTLETILKLGIPP---------DKVWW--LPDEYRHDVMKMEPGFKQVYGRQ------------------ 215 (315)
T ss_pred --ccHHHHHHHHHHHHHHcCCCc---------ceEEE--eCHHHHHHHHHhCcCceeecccc------------------
Confidence 012468899999999998753 24443 46888999999877554422100
Q ss_pred HHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 270 AYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 270 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
.......+..+++ ++..+++++|+.+|++|++|++||||+|
T Consensus 216 --~~~~~~~~~~i~~----------~~~~l~~~~v~~~~~~G~~v~vWTVNd~ 256 (315)
T cd08609 216 --KEMLMDGGNFMNL----------PYQDLSALEIKELRKDNVSVNLWVVNEP 256 (315)
T ss_pred --hhhHhcCCeEEec----------ccccCCHHHHHHHHHCCCEEEEECCCCH
Confidence 0001111222222 4667799999999999999999999986
No 20
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=2e-42 Score=309.20 Aligned_cols=210 Identities=29% Similarity=0.421 Sum_probs=167.4
Q ss_pred CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (322)
Q Consensus 44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (322)
.+||||||+++.+||||++||++|++.|+++||||||+||||++||+||.++.|+|++. |
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~--------------------~ 60 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTNGK--------------------G 60 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccCCC--------------------C
Confidence 36899999999999999999999999999999999999999999999999999999987 4
Q ss_pred ceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHH
Q 020686 124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD 203 (322)
Q Consensus 124 ~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~ 203 (322)
.|.++|++||++++.+.++. ..+. ..++|||+|+|+.+++. .+.+++|+|.+.. ....+++.+++
T Consensus 61 -~i~~~t~~el~~l~~~~~~~---~~~~-~~~iptL~evl~~~~~~--~~~l~leiK~~~~--------~~~~~~~~l~~ 125 (230)
T cd08563 61 -YVKDLTLEELKKLDAGSWFD---EKFT-GEKIPTLEEVLDLLKDK--DLLLNIEIKTDVI--------HYPGIEKKVLE 125 (230)
T ss_pred -chhhCCHHHHHhcCCCCccC---ccCC-CCcCCCHHHHHHHHHhc--CcEEEEEECCCCC--------cChhHHHHHHH
Confidence 79999999999999887643 2233 35899999999999753 4899999997642 11357899999
Q ss_pred HHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhh-cccc
Q 020686 204 TLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY-CVGI 282 (322)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~i 282 (322)
+++++++.+ +++++||+++.+.++++..|...+.++...... ...+.+... +.++
T Consensus 126 ~l~~~~~~~----------~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~--------------~~~~~~~~~~~~~v 181 (230)
T cd08563 126 LVKEYNLED----------RVIFSSFNHESLKRLKKLDPKIKLALLYETGLQ--------------DPKDYAKKIGADSL 181 (230)
T ss_pred HHHHcCCCC----------CEEEEcCCHHHHHHHHHHCCCCcEEEEecCccc--------------CHHHHHHHhCCEEE
Confidence 999998754 899999999999999998876444443322110 011222221 1222
Q ss_pred CCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 283 GPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
.+ ++..+++++++.+|++|++|++||||++
T Consensus 182 ~~----------~~~~~~~~~i~~~~~~g~~v~~Wtvn~~ 211 (230)
T cd08563 182 HP----------DFKLLTEEVVEELKKRGIPVRLWTVNEE 211 (230)
T ss_pred cc----------CchhcCHHHHHHHHHCCCEEEEEecCCH
Confidence 22 4556799999999999999999999985
No 21
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=1.2e-42 Score=325.09 Aligned_cols=220 Identities=17% Similarity=0.201 Sum_probs=164.0
Q ss_pred CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (322)
Q Consensus 43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (322)
+|.+|||||+++.+||||++||++|++.|+|+||+|||+||||+|||+||.+|+|+|++.. .++.++.
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~g--~v~~~~~---------- 68 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDR--VFPERQY---------- 68 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCCC--ccccccc----------
Confidence 4789999999999999999999999999999999999999999999999999999999873 1111110
Q ss_pred cceeeccCHHHHccCcccccccCCCc-------------ccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccc
Q 020686 123 GFFVVDFTLEELKTLRAKQRYSFRDQ-------------QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV 189 (322)
Q Consensus 123 g~~i~~~t~~el~~l~~~~~~~~r~~-------------~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~ 189 (322)
..++++||+||++|+++.|+..+++ .+. +++||||+|+|+.+++.+ ..+++|||.+....
T Consensus 69 -~~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~~--~~l~iEIK~~~~~~--- 141 (351)
T cd08608 69 -EDASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAG-NQSVCSLAELLELAKRYN--ASVLLNLRRPPPNH--- 141 (351)
T ss_pred -cccccCCHHHHhhCCCCcccccCCccccccccccccccccC-CCCCCCHHHHHHHHHhcC--CeEEEEECCCcccC---
Confidence 1357899999999999987632211 233 369999999999997644 67999999753110
Q ss_pred cccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccH
Q 020686 190 KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSD 269 (322)
Q Consensus 190 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 269 (322)
+....+++.+++++.++++.. ++++++||+. ++++|++.|....... ..
T Consensus 142 --~~~~~~~~~v~~~i~~~~~~~---------~~vi~sSf~~--~~~vr~l~P~~~~~~~-~~----------------- 190 (351)
T cd08608 142 --PYHQSWINLTLKTILASGIPQ---------EQVMWTPDWQ--RKLVRKVAPGFQQTSG-EK----------------- 190 (351)
T ss_pred --cchhHHHHHHHHHHHHhCCCc---------CeEEEEcchH--HHHHHHHCCCCeeecc-cc-----------------
Confidence 122467889999999998753 3788888876 4789988776443210 00
Q ss_pred HHHHHHHh-hccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 270 AYLNYIKE-YCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 270 ~~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
.....++. .+.. +.+ ++..+++++|+.+|++|++|++||||+|
T Consensus 191 ~~~~~~~~~~~~~-------l~~---~~~~lt~~~v~~~~~~Gl~V~vWTVN~~ 234 (351)
T cd08608 191 LPVASLRERGITR-------LNL---RYTQASAQEIRDYSASNLSVNLYTVNEP 234 (351)
T ss_pred chHHHHHHcCCeE-------Ecc---chhhcCHHHHHHHHHCCCEEEEEecCCH
Confidence 01112221 1222 222 5667899999999999999999999986
No 22
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.4e-42 Score=309.29 Aligned_cols=210 Identities=29% Similarity=0.419 Sum_probs=164.9
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
||||||+++.+||||++||++|++.|+++||+||++||||++||+||.+++|+|++. | .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~--------------------~-~ 59 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSGGD--------------------G-A 59 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccCCC--------------------c-c
Confidence 589999999999999999999999999999999999999999999999999999987 4 7
Q ss_pred eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (322)
|.++|++||++++.+.++. ..+.+ +++|||+|+|+.++++ .+.++||+|.+. ....+++.+++++
T Consensus 60 i~~~t~~el~~l~~~~~~~---~~~~~-~~iptL~evl~~~~~~--~~~l~ieiK~~~---------~~~~~~~~~~~~~ 124 (233)
T cd08582 60 VSDLTLAELRKLDIGSWKG---ESYKG-EKVPTLEEYLAIVPKY--GKKLFIEIKHPR---------RGPEAEEELLKLL 124 (233)
T ss_pred hhhCCHHHHhcCCCCcccC---CCCCC-CcCCCHHHHHHHHHhc--CceEEEEeCCCc---------cCccHHHHHHHHH
Confidence 9999999999999886543 23333 6999999999999865 388999999751 2346889999999
Q ss_pred HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHH-hhccccCC
Q 020686 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIK-EYCVGIGP 284 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~ 284 (322)
++++... ++++++||++.++++++++.|...++++...... .. .. ...+. ..+.++.+
T Consensus 125 ~~~~~~~---------~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~---~~------~~---~~~~~~~~~~~i~~ 183 (233)
T cd08582 125 KESGLLP---------EQIVIISFDAEALKRVRELAPTLETLWLRNYKSP---KE------DP---RPLAKSGGAAGLDL 183 (233)
T ss_pred HHcCCCC---------CCEEEEecCHHHHHHHHHHCCCCcEEEEeccCcc---cc------ch---hHHHHhhCceEEcc
Confidence 9995432 4999999999999999998776444443322110 00 00 00111 12223333
Q ss_pred CcceeeecCCCCCC-CChHHHHHHHHcCCeEEEEeCCCC
Q 020686 285 WKDTVVPVANNYSQ-TPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 285 ~~~~~~~~~~~~~~-~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++.. .++++++.+|++|++|++||||++
T Consensus 184 ----------~~~~~~~~~~v~~~~~~G~~v~~wTvn~~ 212 (233)
T cd08582 184 ----------SYEKKLNPAFIKALRDAGLKLNVWTVDDA 212 (233)
T ss_pred ----------cccccCCHHHHHHHHHCCCEEEEEeCCCH
Confidence 2333 799999999999999999999985
No 23
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=9e-43 Score=309.39 Aligned_cols=201 Identities=24% Similarity=0.286 Sum_probs=162.1
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
||||||+++.+||||++||++|++.|+|+||+||++||||++||+||.++.|+|++. | .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~--------------------~-~ 59 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAGVN--------------------K-K 59 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccCCC--------------------C-C
Confidence 589999999999999999999999999999999999999999999999999999987 3 7
Q ss_pred eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (322)
|.++|++||++++.+.+ +.+ .++|||+|+|+.++++ .+.++||+|.+.. ....+++.+++++
T Consensus 60 v~~~t~~el~~l~~~~~-------~~~-~~iptL~evl~~~~~~--~~~l~iEiK~~~~--------~~~~~~~~v~~~l 121 (220)
T cd08579 60 VWDLTLEELKKLTIGEN-------GHG-AKIPSLDEYLALAKGL--KQKLLIELKPHGH--------DSPDLVEKFVKLY 121 (220)
T ss_pred hhhCCHHHHhcCcCccC-------CCC-CcCCCHHHHHHHhhcc--CCeEEEEECCCCC--------CCHHHHHHHHHHH
Confidence 99999999999998754 223 5899999999999754 3789999998642 2346889999999
Q ss_pred HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCCC
Q 020686 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW 285 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 285 (322)
+++++.. +++|+||+++.++++++..|...+.++..... .. .. ...+..+++
T Consensus 122 ~~~~~~~----------~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~---------~~------~~--~~~~~~~~~- 173 (220)
T cd08579 122 KQNLIEN----------QHQVHSLDYRVIEKVKKLDPKIKTGYILPFNI---------GN------LP--KTNVDFYSI- 173 (220)
T ss_pred HHcCCCc----------CeEEEeCCHHHHHHHHHHCCCCeEEEEEeccc---------Cc------cc--ccCceEEee-
Confidence 9998764 89999999999999999876544433322111 00 00 011111211
Q ss_pred cceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 286 KDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++..+++++++.+|++|++|++||||+|
T Consensus 174 ---------~~~~~~~~~v~~~~~~G~~v~~wtvn~~ 201 (220)
T cd08579 174 ---------EYSTLNKEFIRQAHQNGKKVYVWTVNDP 201 (220)
T ss_pred ---------ehhhcCHHHHHHHHHCCCEEEEEcCCCH
Confidence 3456789999999999999999999985
No 24
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.9e-42 Score=310.02 Aligned_cols=210 Identities=22% Similarity=0.245 Sum_probs=159.7
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. | .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~--------------------g-~ 59 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTHGT--------------------G-A 59 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccCCC--------------------C-c
Confidence 589999999999999999999999999999999999999999999999999999987 4 6
Q ss_pred eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (322)
|.++|++||++|+++.++ ++++|||+|+|+.++. ..+.++||+|.+.... ....+++.+++++
T Consensus 60 v~~~t~~el~~l~~~~~~---------~~~iptL~evl~~~~~--~~~~l~iEiK~~~~~~------~~~~~~~~v~~~i 122 (235)
T cd08565 60 VRDLTLAERKALRLRDSF---------GEKIPTLEEVLALFAP--SGLELHVEIKTDADGT------PYPGAAALAAATL 122 (235)
T ss_pred eeeccHHHHhcCCCCCCC---------CCCCCCHHHHHHHhhc--cCcEEEEEECCCCCCC------ccHHHHHHHHHHH
Confidence 999999999999987532 2589999999999874 3488999999753110 1246889999999
Q ss_pred HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCe-EEEEeccCccCCCCcccccccccHHHHHHHH-hhccccC
Q 020686 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYIK-EYCVGIG 283 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~ 283 (322)
+++++.. +++|+||++++|+++|++ |... .+++...... . ...... ..... ..+..++
T Consensus 123 ~~~~~~~----------~v~~~Sf~~~~l~~~~~~-p~~~~~~l~~~~~~~---~---~~~~~~---~~~~~~~~~~~~~ 182 (235)
T cd08565 123 RRHGLLE----------RSVLTSFDPAVLTEVRKH-PGVRTLGSVDEDMLE---R---LGGELP---FLTATALKAHIVA 182 (235)
T ss_pred HhCCCcC----------CEEEEECCHHHHHHHHhC-CCCcEEEEecccccc---c---cccccc---hhhhhhccCcEEc
Confidence 9999864 899999999999999999 7644 4444321100 0 000000 00111 1121122
Q ss_pred CCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 284 PWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
+ . ..+...++++++.+|+ |++|++||||++
T Consensus 183 ~-----~---~~~~~~~~~~v~~~~~-g~~v~~WTVn~~ 212 (235)
T cd08565 183 V-----E---QSLLAATWELVRAAVP-GLRLGVWTVNDD 212 (235)
T ss_pred c-----C---cccccCCHHHHHHHhC-CCEEEEEccCCH
Confidence 1 1 1223568999999975 999999999985
No 25
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=3.1e-42 Score=313.81 Aligned_cols=229 Identities=26% Similarity=0.291 Sum_probs=163.5
Q ss_pred CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (322)
Q Consensus 44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (322)
|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. |
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~--------------------~ 60 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTGGS--------------------G 60 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeCCc--------------------e
Confidence 78999999999999999999999999999999999999999999999999999999987 4
Q ss_pred ceeeccCHHHHccCcccccccCC-----CcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHH
Q 020686 124 FFVVDFTLEELKTLRAKQRYSFR-----DQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFE 198 (322)
Q Consensus 124 ~~i~~~t~~el~~l~~~~~~~~r-----~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~ 198 (322)
.|.++|++||++++++.++... ........++|||+|+|+.+. . +.++||+|.+.. ..++
T Consensus 61 -~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~---~-~~l~iEiK~~~~----------~~~~ 125 (264)
T cd08575 61 -LVSDLTYAELPPLDAGYGYTFDGGKTGYPRGGGDGRIPTLEEVFKAFP---D-TPINIDIKSPDA----------EELI 125 (264)
T ss_pred -EEecCCHHHHHhcccCCccccCCCCcccccCCCCCcCCcHHHHHHhCC---C-CeEEEEECCCCH----------HHHH
Confidence 7999999999999998765321 111122369999999999873 2 789999997531 4688
Q ss_pred HHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCC-eEEEEeccCccCCCCcccccccccHHHHHHHHh
Q 020686 199 DKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-KIFLIDDVDILTEDTNQSYSEITSDAYLNYIKE 277 (322)
Q Consensus 199 ~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~-~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (322)
+.++++++++++.. +++|+||++++|++++++.|.. ..++............ +...... ...+.
T Consensus 126 ~~v~~~i~~~~~~~----------~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~ 190 (264)
T cd08575 126 AAVLDLLEKYKRED----------RTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALG--YTGLLPF---VPIKE 190 (264)
T ss_pred HHHHHHHHhccccc----------eEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhh--eeccCCC---CCCCc
Confidence 99999999998764 8999999999999999987652 2222111000000000 0000000 00000
Q ss_pred hccccCCCcceee-------ecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 278 YCVGIGPWKDTVV-------PVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 278 ~~~~i~~~~~~~~-------~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
.+.++......+. ..+.++...++++|+.+|++|++|++||||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~ 242 (264)
T cd08575 191 SFFEIPRPVIVLETFTLGEGASIVAALLWWPNLFDHLRKRGIQVYLWVLNDE 242 (264)
T ss_pred eEEEeecccEEEEEeccccccchhhhhhcCHHHHHHHHhcCCcEEEEEECCH
Confidence 0011111000000 00124567899999999999999999999985
No 26
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.4e-41 Score=309.38 Aligned_cols=232 Identities=24% Similarity=0.322 Sum_probs=166.5
Q ss_pred eEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccc
Q 020686 45 YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGF 124 (322)
Q Consensus 45 ~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~ 124 (322)
.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+......+... . +.
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~~~~~~----------~-~~ 70 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAWLPY----------E-GP 70 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCCCcccc----------c-Cc
Confidence 589999999999999999999999999999999999999999999999999987643210011000 0 12
Q ss_pred eeeccCHHHHccCccccccc-------CCCcccCCCccccCHHHHHHHHHhcC-CcceEeeeeCCcccccccccccCcch
Q 020686 125 FVVDFTLEELKTLRAKQRYS-------FRDQQYNGKFPIITFEEYISIALDAQ-RVVGIYPEMKNPVFINQHVKWADGKK 196 (322)
Q Consensus 125 ~i~~~t~~el~~l~~~~~~~-------~r~~~~~~~~~iptL~e~l~~~~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~~ 196 (322)
.|+++|++||++++.+.++. |+.+....++++|||+|+|+.++.++ ..+.++||+|.+...+. ..+....
T Consensus 71 ~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~--~~~~~~~ 148 (263)
T cd08567 71 ALYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDI--LHPPPEE 148 (263)
T ss_pred chhcCCHHHHHhcCCCccccCcCcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccc--cCccHHH
Confidence 79999999999999886641 11111111258999999999998642 24789999997643210 0112356
Q ss_pred HHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCe-EEEEeccCccCCCCcccccccccHHHHHHH
Q 020686 197 FEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYI 275 (322)
Q Consensus 197 ~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 275 (322)
+++.++++++++++.. |++|+||+++++++++++.|... .++...... . .....+
T Consensus 149 ~~~~v~~~l~~~~~~~----------~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~------~--------~~~~~~ 204 (263)
T cd08567 149 FVDAVLAVIRKAGLED----------RVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL------G--------NLPRAA 204 (263)
T ss_pred HHHHHHHHHHHcCCCC----------ceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc------c--------CHHHHH
Confidence 8899999999998764 89999999999999999877544 444322110 0 011112
Q ss_pred HhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 276 KEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 276 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
+.. +. ..+.+ .+..+++++++.+|++|+.|++||||+|
T Consensus 205 ~~~----~~--~~~~~---~~~~~~~~~i~~~~~~G~~v~vwtvn~~ 242 (263)
T cd08567 205 KKL----GA--DIWSP---YFTLVTKELVDEAHALGLKVVPWTVNDP 242 (263)
T ss_pred HHh----CC--cEEec---chhhcCHHHHHHHHHCCCEEEEecCCCH
Confidence 211 11 11222 3456799999999999999999999985
No 27
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=9.1e-42 Score=305.80 Aligned_cols=212 Identities=25% Similarity=0.319 Sum_probs=158.1
Q ss_pred CeEEeeCCCCCC---CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcc
Q 020686 44 PYNLAHRGSNGE---FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVN 120 (322)
Q Consensus 44 p~iiaHRG~~~~---~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~ 120 (322)
+.+|||||+++. +||||++||++|++.|+ +||+|||+||||++||+||.+++|+|++.
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~------------------ 64 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTGVE------------------ 64 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcCCC------------------
Confidence 457999999774 79999999999999999 89999999999999999999999999987
Q ss_pred cccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHH
Q 020686 121 TTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDK 200 (322)
Q Consensus 121 ~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~ 200 (322)
| .|.++|++||++++.+. .+++||||+|+|+.+.. .+.++||+|.+.. ....+++.
T Consensus 65 --~-~v~~~t~~eL~~l~~~~----------~~~~iPtL~evl~~~~~---~~~l~iEiK~~~~--------~~~~l~~~ 120 (237)
T cd08585 65 --G-RVEELTAAELRALRLLG----------TDEHIPTLDEVLELVAG---RVPLLIELKSCGG--------GDGGLERR 120 (237)
T ss_pred --C-ccccCCHHHHhcCCCCC----------CCCCCCCHHHHHHHhcc---CceEEEEEccCCc--------cchHHHHH
Confidence 4 79999999999999863 23599999999998853 3689999997542 23468899
Q ss_pred HHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHHhhc
Q 020686 201 FVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYC 279 (322)
Q Consensus 201 v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (322)
+++++++++ .+++|+||++++++++|++.|. +..++...... .... + .........+.. .
T Consensus 121 v~~~l~~~~------------~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~---~~~~-~--~~~~~~~~~~~~-~ 181 (237)
T cd08585 121 VLAALKDYK------------GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSND---EADP-A--FWNEALLSALFS-N 181 (237)
T ss_pred HHHHHHhcC------------CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcc---cccc-c--chhHHHHHhhhh-h
Confidence 999999874 2799999999999999998775 44455432210 0000 0 000000111100 0
Q ss_pred cccCCCcceeeecCCCCCCCChHHHHHHHHc-CCeEEEEeCCCC
Q 020686 280 VGIGPWKDTVVPVANNYSQTPTDLVARAHAL-DLQIHIGNTTTG 322 (322)
Q Consensus 280 ~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~-Gl~V~vWTvn~~ 322 (322)
...++. .+.+ ++..+++++|+.+|++ |++|++||||+|
T Consensus 182 ~~~~~~--~~~~---~~~~~~~~~v~~~~~~~G~~v~vWTVnd~ 220 (237)
T cd08585 182 LLTRPD--FIAY---HLDDLPNPFVTLARALLGMPVIVWTVRTE 220 (237)
T ss_pred hccCCC--EEEe---ChhhCcCHHHHHHHHhcCCcEEEEeCCCH
Confidence 011221 1221 4456789999999999 999999999986
No 28
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=2.5e-41 Score=312.16 Aligned_cols=246 Identities=20% Similarity=0.250 Sum_probs=166.8
Q ss_pred eEEeeCCCC-------CCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccC
Q 020686 45 YNLAHRGSN-------GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQ 117 (322)
Q Consensus 45 ~iiaHRG~~-------~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~ 117 (322)
+.|||||++ +.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|++++... . +
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~--~---------~ 69 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGD--S---------D 69 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccc--c---------C
Confidence 359999994 899999999999999999999999999999999999999999999886410 0 0
Q ss_pred CcccccceeeccCHHHHccCcccccccCCCcccC---------CCccccCHHHHHHHHHhcCCcceEeeeeCCccccccc
Q 020686 118 GVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYN---------GKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQH 188 (322)
Q Consensus 118 g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~---------~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~ 188 (322)
+....+..|.++|++||++++++.+..+..+.+. ...++|||+|+|+.+.. .++++||||.+......
T Consensus 70 ~~~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~---~~~lnIEiK~~~~~~~~ 146 (290)
T cd08607 70 RDDLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPE---DVGFNIEIKWPQQQKDG 146 (290)
T ss_pred ccceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCC---ccceEEEEecCcccccc
Confidence 0000123799999999999998754322222222 23589999999998853 48899999976421110
Q ss_pred c------cccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcc
Q 020686 189 V------KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQ 261 (322)
Q Consensus 189 ~------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~ 261 (322)
. .+.+...+++.+++.+.+++..+ +++|+||++++|..++++.|. +..++...... ...
T Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~----------~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~----~~~ 212 (290)
T cd08607 147 SWESELFTYFDRNLFVDIILKIVLEHAGKR----------RIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQ----RYP 212 (290)
T ss_pred ccccccccccchhHHHHHHHHHHHHhCCCC----------CEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCC----ccc
Confidence 0 01122458899999999987653 899999999999999998764 55555432210 000
Q ss_pred cccccccHHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeC--CCC
Q 020686 262 SYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNT--TTG 322 (322)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTv--n~~ 322 (322)
.+...... .+.....++.........+ +..+...++++|+.+|++|+.|++||| |+|
T Consensus 213 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~ 271 (290)
T cd08607 213 EFMDLRTR-TFEIAVNFAQAEELLGVNL---HSEDLLKDPSQIELAKSLGLVVFCWGDDLNDP 271 (290)
T ss_pred cccchHHH-hHHHHHHHHHHcCCceeEe---chhhhhcChHHHHHHHHcCCEEEEECCCCCCH
Confidence 11110000 0111112222222211111 124456799999999999999999999 875
No 29
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.9e-41 Score=312.69 Aligned_cols=245 Identities=20% Similarity=0.277 Sum_probs=170.4
Q ss_pred eEEeeCCCC--------CCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCccccccccccccc
Q 020686 45 YNLAHRGSN--------GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMV 116 (322)
Q Consensus 45 ~iiaHRG~~--------~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~ 116 (322)
+||||||++ +.+||||++||+.|++.|+|+||+|||+||||++||+||.++.|++++... +
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~--~--------- 69 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTG--S--------- 69 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccc--c---------
Confidence 479999997 799999999999999999999999999999999999999999999987631 0
Q ss_pred CCcccccceeeccCHHHHccCcccccccCCCcc--------------cCCCccccCHHHHHHHHHhcCCcceEeeeeCCc
Q 020686 117 QGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQ--------------YNGKFPIITFEEYISIALDAQRVVGIYPEMKNP 182 (322)
Q Consensus 117 ~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~--------------~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~ 182 (322)
++....+..|.++|++||++++++.+++..++. ...+.++|||+|+|+.+++ .++++||||.+
T Consensus 70 ~~~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~---~~~l~IEiK~~ 146 (293)
T cd08572 70 DEGELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPK---DLGFNIEIKYP 146 (293)
T ss_pred ccCcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCC---ccceEEEEecC
Confidence 000011237999999999999998764322221 1123589999999998853 47899999986
Q ss_pred cccccc----ccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCC
Q 020686 183 VFINQH----VKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTE 257 (322)
Q Consensus 183 ~~~~~~----~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~ 257 (322)
...... ..++....+++.++++++++++.+ +++++||++++|+.+++..|. +.++++..... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~~----------~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~-~- 214 (293)
T cd08572 147 QLLEDGEGELTPYFERNAFVDTILAVVFEHAGGR----------RIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTN-E- 214 (293)
T ss_pred CccccccccccchHHHHHHHHHHHHHHHHhCCCC----------cEEEECCCHHHHHHHHhhCccCCEEEEecCCCC-c-
Confidence 532210 011122468899999999998764 899999999999999998764 55555533210 0
Q ss_pred CCcccccccccHHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeC--CCC
Q 020686 258 DTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNT--TTG 322 (322)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTv--n~~ 322 (322)
..+.... ...+..+..++...+.. .+.+ ...+...++++|+.+|++|+.|++||| |+|
T Consensus 215 ---~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~ 274 (293)
T cd08572 215 ---VEHMDPR-RRSLQAAVNFALAEGLL--GVVL-HAEDLLKNPSLISLVKALGLVLFTYGDDNNDP 274 (293)
T ss_pred ---ccccchh-hhhHHHHHHHHHHCCCe--EEEe-chHHhhcCcHHHHHHHHcCcEEEEECCCCCCH
Confidence 0010000 01122222222212221 1111 112344689999999999999999999 875
No 30
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=5.1e-41 Score=300.87 Aligned_cols=210 Identities=22% Similarity=0.309 Sum_probs=158.1
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.++.|+|++. |..
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~--------------------~~~ 60 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFGKD--------------------GLI 60 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeCCC--------------------CCE
Confidence 589999999999999999999999999999999999999999999999999999976 227
Q ss_pred eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhc-CCcceEeeeeCCcccccccccccCcchHHHHHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDA-QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDT 204 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~-~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~ 204 (322)
|.++|++||++++++. .+..++|||+|+|+.++++ ++.+.++||+|... ....+++.+.++
T Consensus 61 v~~~t~~eL~~l~~~~---------~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~---------~~~~~~~~v~~~ 122 (234)
T cd08570 61 IDDSTWDELSHLRTIE---------EPHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDN---------DPEILFKLIAEM 122 (234)
T ss_pred eccCCHHHHhhccccc---------CCCccCCcHHHHHHHHHhcCCCCeEEEEEECCCC---------CHHHHHHHHHHH
Confidence 9999999999998763 1235899999999999764 13588999999743 123567788888
Q ss_pred HHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHHhh---cc
Q 020686 205 LKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY---CV 280 (322)
Q Consensus 205 l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~ 280 (322)
+++++... |..+|++|+||++..++++++..|. +.+++..... .......+ +.
T Consensus 123 i~~~~~~~------~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~-----------------~~~~~~~~~~~~~ 179 (234)
T cd08570 123 LAVKPDLD------FWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSLD-----------------YARHFLNYSEKLV 179 (234)
T ss_pred HHhcCCcc------cccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHH-----------------HHHHHhccccccc
Confidence 88876421 1225999999999999999998775 4444321110 00011111 11
Q ss_pred ccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 281 GIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 281 ~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++++.... .+..+++++++.+|++|++|++||||++
T Consensus 180 ~~~~~~~~------~~~~~~~~~v~~~~~~gl~v~~wTvn~~ 215 (234)
T cd08570 180 GISMHFVS------LWGPFGQAFLPELKKNGKKVFVWTVNTE 215 (234)
T ss_pred eEEeeeeh------hhcccCHHHHHHHHHCCCEEEEEecCCH
Confidence 22211000 0111589999999999999999999985
No 31
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=8.4e-41 Score=304.77 Aligned_cols=211 Identities=23% Similarity=0.327 Sum_probs=162.6
Q ss_pred CCCCeEEeeCCCCCC--CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCcc--------ccCCCCccccccc
Q 020686 41 TSRPYNLAHRGSNGE--FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDD--------TTNIADHKEFADR 110 (322)
Q Consensus 41 ~~~p~iiaHRG~~~~--~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r--------~t~~~~~~~~~~~ 110 (322)
+.+|.||||||+++. +||||++||++|++.|+|+||+|||+||||++||+||.++++ ++++.
T Consensus 1 ~~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~~~-------- 72 (265)
T cd08564 1 MVRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDSGF-------- 72 (265)
T ss_pred CCCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCccccccccCCCc--------
Confidence 467999999999987 999999999999999999999999999999999999987665 44443
Q ss_pred ccccccCCcccccceeeccCHHHHccCcccccccCCC---cccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccc
Q 020686 111 KRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD---QQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQ 187 (322)
Q Consensus 111 ~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~---~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~ 187 (322)
| .|.++|++||++++++.++..+. ..+. +.++|||+|+|+.+++ .+.++||+|.+.
T Consensus 73 ------------~-~v~~~t~~el~~l~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~---~~~l~iEiK~~~---- 131 (265)
T cd08564 73 ------------K-NINDLSLDEITRLHFKQLFDEKPCGADEIK-GEKIPTLEDVLVTFKD---KLKYNIELKGRE---- 131 (265)
T ss_pred ------------c-chhhCcHHHHhhcccCcccccCcccccccC-CccCCCHHHHHHHhcc---CcEEEEEeCCCc----
Confidence 3 79999999999999987763221 1123 3699999999999864 489999999753
Q ss_pred cccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccCh-hHHHHHhhcCCC----CeEEEEeccCccCCCCccc
Q 020686 188 HVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAP-TSLVYISNKTDS----PKIFLIDDVDILTEDTNQS 262 (322)
Q Consensus 188 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~-~~l~~~~~~~~~----~~v~l~~~~~~~~~~~~~~ 262 (322)
..+++.++++++++++.+ +++|+||++ +++++++++.|. +.+++...... . .
T Consensus 132 -------~~~~~~v~~~l~~~~~~~----------~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-----~-~ 188 (265)
T cd08564 132 -------VGLGERVLNLVEKYGMIL----------QVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKS-----P-S 188 (265)
T ss_pred -------hhHHHHHHHHHHHcCCCC----------CEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCC-----c-c
Confidence 357899999999999764 899999999 999999998763 55555543210 0 0
Q ss_pred ccccccHHHHHHHHhh-ccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEe
Q 020686 263 YSEITSDAYLNYIKEY-CVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGN 318 (322)
Q Consensus 263 ~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWT 318 (322)
+ .+.++.++.. +.++.+ ++..+++++|+.+|++|+.|++||
T Consensus 189 ~-----~~~~~~~~~~~~~~v~~----------~~~~~~~~~v~~~~~~Gl~v~~wT 230 (265)
T cd08564 189 P-----LDFLEQAKYYNATWVNF----------SYDFWTEEFVKKAHENGLKVMTYF 230 (265)
T ss_pred c-----ccHHHHHHhcCCceeee----------chhhhhHHHHHHHHHcCCEEEEec
Confidence 0 0112222221 222221 345668999999999999999999
No 32
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.3e-40 Score=299.28 Aligned_cols=212 Identities=29% Similarity=0.366 Sum_probs=161.6
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.++.|+|++. | .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~--------------------~-~ 59 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTDGT--------------------G-P 59 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccCCC--------------------C-c
Confidence 589999999999999999999999999999999999999999999999999999987 3 7
Q ss_pred eeccCHHHHccCcccccccCCCc-----ccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQ-----QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDK 200 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~-----~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~ 200 (322)
|.++|++||++++.+.++..++. .+. .+++|||+|+|+.+.+ +.++||+|.+. ..+++.
T Consensus 60 i~~~t~~el~~l~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~----~~~~ieiK~~~-----------~~~~~~ 123 (249)
T cd08561 60 VADLTLAELRRLDAGYHFTDDGGRTYPYRGQ-GIRIPTLEELFEAFPD----VRLNIEIKDDG-----------PAAAAA 123 (249)
T ss_pred hhhCCHHHHhhcCcCccccCccccccccCCC-CccCCCHHHHHHhCcC----CcEEEEECCCc-----------hhHHHH
Confidence 99999999999998766422211 122 3599999999998742 78999999742 358899
Q ss_pred HHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhc-
Q 020686 201 FVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYC- 279 (322)
Q Consensus 201 v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 279 (322)
++++++++++.. +++++||+..+++++++..|.....+.... .........
T Consensus 124 ~~~~l~~~~~~~----------~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~------------------~~~~~~~~~~ 175 (249)
T cd08561 124 LADLIERYGAQD----------RVLVASFSDRVLRRFRRLCPRVATSAGEGE------------------VAAFVLASRL 175 (249)
T ss_pred HHHHHHHcCCCC----------cEEEEECCHHHHHHHHHHCCCcceeccHHH------------------HHHHHHHhhc
Confidence 999999998654 899999999999999999875444332111 011000000
Q ss_pred ---cccCCCcceee-ec-CCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 280 ---VGIGPWKDTVV-PV-ANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 280 ---~~i~~~~~~~~-~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
.........+. +. ...+..+++++++.+|++|+.|++||||++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVN~~ 223 (249)
T cd08561 176 GLGSLYSPPYDALQIPVRYGGVPLVTPRFVRAAHAAGLEVHVWTVNDP 223 (249)
T ss_pred ccccccCCCCcEEEcCcccCCeecCCHHHHHHHHHCCCEEEEEecCCH
Confidence 00011111111 11 113446789999999999999999999985
No 33
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=3.1e-40 Score=304.24 Aligned_cols=233 Identities=22% Similarity=0.296 Sum_probs=161.6
Q ss_pred CeEEeeCCCCCCCc--------hhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccc
Q 020686 44 PYNLAHRGSNGEFP--------EETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCM 115 (322)
Q Consensus 44 p~iiaHRG~~~~~p--------ENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~ 115 (322)
+.||||||+++.+| |||++||++|++.|+|+||+|||+||||+|||+||.+++|+ ++.
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~~~------------- 67 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-GTD------------- 67 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-CCC-------------
Confidence 67999999999999 99999999999999999999999999999999999999995 544
Q ss_pred cCCcccccceeeccCHHHHccCcccccc-cCCCcccC----CC---ccccCHHHHHHHHHhcCCcceEeeeeCCcccccc
Q 020686 116 VQGVNTTGFFVVDFTLEELKTLRAKQRY-SFRDQQYN----GK---FPIITFEEYISIALDAQRVVGIYPEMKNPVFINQ 187 (322)
Q Consensus 116 ~~g~~~~g~~i~~~t~~el~~l~~~~~~-~~r~~~~~----~~---~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~ 187 (322)
| .|.++|++||++++..... .+....|. +. .++|||+|+|+.+. ..++++||||.+.....
T Consensus 68 -------~-~v~~lt~~eL~~ld~~~~~~~~~~~~~~~~~~g~~~~~~iptL~evl~~~~---~~~~l~IEiK~~~~~~~ 136 (286)
T cd08606 68 -------V-PIHDLTLEQFLHLSRMKYTVDFKKKGFKGNSRGHSIQAPFTTLEELLKKLP---KSVGFNIELKYPMLHEA 136 (286)
T ss_pred -------C-ccccCCHHHHHhhhcccccccccccCCCCcccccccccCCCcHHHHHHhCC---CccceEEEEecCCcchh
Confidence 3 6999999999999743211 11122222 21 36899999999884 34789999998643211
Q ss_pred ccc-----ccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCC-eEEEEeccCccCCCCcc
Q 020686 188 HVK-----WADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-KIFLIDDVDILTEDTNQ 261 (322)
Q Consensus 188 ~~~-----~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~-~v~l~~~~~~~~~~~~~ 261 (322)
... ..+.+.+++.++++++++++.. +++|+||++++|++++++.|.. ..++...... ..
T Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~----------~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~--~~--- 201 (286)
T cd08606 137 EEEEVAPVAIELNAFVDTVLEKVFDYGAGR----------NIIFSSFTPDICILLSLKQPGYPVLFLTEAGKA--PD--- 201 (286)
T ss_pred hhcccccchhHHHHHHHHHHHHHHhcCCCC----------ceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCC--cc---
Confidence 000 0011357889999999998753 8999999999999999987654 4444432110 00
Q ss_pred cccccccHHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeC--CCC
Q 020686 262 SYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNT--TTG 322 (322)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTv--n~~ 322 (322)
..... ..+.....++..++.. .+.+ ...+..+++++|+.+|++|+.|++||| |+|
T Consensus 202 --~~~~~-~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~v~~~~~~Gl~v~~WTv~~n~~ 258 (286)
T cd08606 202 --MDVRA-ASLQEAIRFAKQWNLL--GLVS-AAEPLVMCPRLIQVVKRSGLVCVSYGVLNNDP 258 (286)
T ss_pred --CCchh-hcHHHHHHHHHHCCCe--EEEe-chHHhhhChHHHHHHHHCCcEEEEECCccCCH
Confidence 00000 0011111222222221 1111 113345689999999999999999999 875
No 34
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=3.4e-40 Score=303.38 Aligned_cols=234 Identities=21% Similarity=0.190 Sum_probs=160.1
Q ss_pred eEEeeCCCCC-C----------CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccc
Q 020686 45 YNLAHRGSNG-E----------FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRT 113 (322)
Q Consensus 45 ~iiaHRG~~~-~----------~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~ 113 (322)
.+|||||++. . +||||++||++|++.|+|+||+|||+||||+|||+||.+++|++++..
T Consensus 1 ~~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~---------- 70 (282)
T cd08605 1 AVIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEV---------- 70 (282)
T ss_pred CeEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCc----------
Confidence 3799999865 3 459999999999999999999999999999999999999999988520
Q ss_pred cccCCcccccceeeccCHHHHccCcccccccCCC----------cc---c--CCCccccCHHHHHHHHHhcCCcceEeee
Q 020686 114 CMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD----------QQ---Y--NGKFPIITFEEYISIALDAQRVVGIYPE 178 (322)
Q Consensus 114 ~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~----------~~---~--~~~~~iptL~e~l~~~~~~~~~~~l~iE 178 (322)
..| .|.++|++||++|+++.++.+.. +. + ..+.++|||+|+|+.+.. .+.++||
T Consensus 71 -------~~~-~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~---~~~l~IE 139 (282)
T cd08605 71 -------ESS-RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPP---SLGFNIE 139 (282)
T ss_pred -------Ccc-chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCC---CccEEEE
Confidence 013 69999999999999876542100 00 0 123689999999998842 4789999
Q ss_pred eCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCC-eEEEEeccCccCC
Q 020686 179 MKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-KIFLIDDVDILTE 257 (322)
Q Consensus 179 iK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~-~v~l~~~~~~~~~ 257 (322)
||.+...... ...-..+++.++++++++++.. +++|+|||+++|+++|++.|.. ..+|......
T Consensus 140 iK~~~~~~~~--~~~~~~~~~~v~~~i~~~~~~~----------~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~--- 204 (282)
T cd08605 140 LKFGDDNKTE--AEELVRELRAILAVCKQHAPGR----------RIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPY--- 204 (282)
T ss_pred EecCccccch--HHHHHHHHHHHHHHHHhcCCCC----------eEEEEeCCHHHHHHHHhcCccCCEEEEecCCCc---
Confidence 9975421100 0000124678899999988754 8999999999999999987754 4454432210
Q ss_pred CCcccccccccHHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeC--CCC
Q 020686 258 DTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNT--TTG 322 (322)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTv--n~~ 322 (322)
.+.... ...+.....++..++.. .+.+. ......++++|+.+|++|+.|++||| |+|
T Consensus 205 ----~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~~~l~~~~~~v~~~~~~Gl~v~vWTv~~n~~ 263 (282)
T cd08605 205 ----THNDPR-RNSIEAAIQVALEGGLQ--GIVSE-VKVLLRNPTAVSLVKASGLELGTYGKLNNDA 263 (282)
T ss_pred ----cccCch-hhhHHHHHHHHHHcCCc--eEEec-HHHhhcCcHHHHHHHHcCcEEEEeCCCCCCH
Confidence 000000 00111111222222221 22221 01123589999999999999999999 975
No 35
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=7.2e-40 Score=294.30 Aligned_cols=204 Identities=25% Similarity=0.275 Sum_probs=158.4
Q ss_pred eEEeeCCCCCC-CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686 45 YNLAHRGSNGE-FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (322)
Q Consensus 45 ~iiaHRG~~~~-~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (322)
+||||||+++. +||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. |
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~--------------------~ 60 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTNGK--------------------G 60 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccCCC--------------------C
Confidence 47999999998 99999999999999999999999999999999999999999999987 4
Q ss_pred ceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHH
Q 020686 124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD 203 (322)
Q Consensus 124 ~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~ 203 (322)
.+.++|++||++++.+.++ ..+.+ +++|||+|+|+.+++. +.++||+|.+ ..+.+++
T Consensus 61 -~v~~~t~~el~~l~~~~~~----~~~~~-~~iptL~evl~~~~~~---~~l~iEiK~~--------------~~~~~~~ 117 (240)
T cd08566 61 -KVSDLTLAEIRKLRLKDGD----GEVTD-EKVPTLEEALAWAKGK---ILLNLDLKDA--------------DLDEVIA 117 (240)
T ss_pred -chhhCcHHHHHhCCcCCCc----CCCCC-CCCCCHHHHHHhhhcC---cEEEEEECch--------------HHHHHHH
Confidence 7999999999999998764 23344 5999999999998752 7899999963 3578899
Q ss_pred HHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccC
Q 020686 204 TLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIG 283 (322)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 283 (322)
+++++++.+ +++|+||+.+.++.++++.|.....++..... +.... .......+.
T Consensus 118 ~~~~~~~~~----------~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~--------------~~~~~-~~~~~~~~~ 172 (240)
T cd08566 118 LVKKHGALD----------QVIFKSYSEEQAKELRALAPEVMLMPIVRDAE--------------DLDEE-EARAIDALN 172 (240)
T ss_pred HHHHcCCcc----------cEEEEECCHHHHHHHHHhCCCCEEEEEEccCc--------------chhHH-HHhcccccc
Confidence 999998754 89999999999999999977655544432210 00000 001111111
Q ss_pred CCcceeeecCCCCCC-CChHHHHHHHHc-CCeEEEEeCCC
Q 020686 284 PWKDTVVPVANNYSQ-TPTDLVARAHAL-DLQIHIGNTTT 321 (322)
Q Consensus 284 ~~~~~~~~~~~~~~~-~~~~~v~~ah~~-Gl~V~vWTvn~ 321 (322)
+ ..+.+ .+.. ..+..+..+|+. |++|++||||+
T Consensus 173 ~--~~~~~---~~~~~~~~~~~~~~~~~~Gl~v~~wTvn~ 207 (240)
T cd08566 173 L--LAFEI---TFDDLDLPPLFDELLRALGIRVWVNTLGD 207 (240)
T ss_pred e--EEEEE---eccccccHHHHHHHHHhCCCEEEEECCCc
Confidence 1 11222 2332 467888888887 99999999995
No 36
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=2.3e-38 Score=284.27 Aligned_cols=211 Identities=18% Similarity=0.174 Sum_probs=153.5
Q ss_pred EEeeCCC--CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686 46 NLAHRGS--NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (322)
Q Consensus 46 iiaHRG~--~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (322)
.|||||+ ++.+||||++||++|++.|+|+||+|||+||||++||+||.++.|+.+... ...+
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~----------------~~~~ 64 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGL----------------PTSK 64 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCC----------------cccc
Confidence 3899997 679999999999999999999999999999999999999999987532210 0002
Q ss_pred ceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHH
Q 020686 124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD 203 (322)
Q Consensus 124 ~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~ 203 (322)
.+.++|++|+++++.. .+ +++|||+|+|+.+++++ .+.++||+|.... . ....++..+++
T Consensus 65 -~i~~~t~~el~~~~~~----------~~-~~iptL~evl~~~~~~~-~~~l~iEiK~~~~-~------~~~~~~~~l~~ 124 (237)
T cd08583 65 -NTKPLSYEEFKSKKIY----------GK-YTPMDFKDVIDLLKKYP-DVYIVTDTKQDDD-N------DIKKLYEYIVK 124 (237)
T ss_pred -cccCCCHHHHhhcccc----------CC-CCCCCHHHHHHHHHhCC-CeEEEEEecCCCc-c------cHHHHHHHHHH
Confidence 5899999999997642 23 58999999999998542 4789999997532 0 11346778899
Q ss_pred HHHHcC--CCCccccccccCCCEEEeccChhHHHHHhhcCCCCe-EEEEeccCccCCCCcccccccccHHHHHHHHhhcc
Q 020686 204 TLKKYG--YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCV 280 (322)
Q Consensus 204 ~l~~~~--~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (322)
.+++++ +. +|++|+||++.+|+.+++..|... .++...... .......+.+..
T Consensus 125 ~~~~~~~~~~----------~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~~-----------~~~~~~~~~~~~--- 180 (237)
T cd08583 125 EAKEVDPDLL----------DRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDS-----------IRLDEIIAFCYE--- 180 (237)
T ss_pred HHHhhccccc----------ceeEEEecCHHHHHHHHHhCCCcceeeEeccccc-----------cchHHHHHHHHH---
Confidence 998863 43 489999999999999999977533 333221100 000111222221
Q ss_pred ccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 281 GIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 281 ~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++.. .+.+ ++...++++++.+|++|++|++||||+|
T Consensus 181 -~~~~--~~~~---~~~~~~~~~v~~~~~~Gl~v~vwTVn~~ 216 (237)
T cd08583 181 -NGIK--AVTI---SKNYVNDKLIEKLNKAGIYVYVYTINDL 216 (237)
T ss_pred -cCCc--EEEe---chhhcCHHHHHHHHHCCCEEEEEeCCCH
Confidence 2221 2222 3456799999999999999999999985
No 37
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=100.00 E-value=7.6e-38 Score=285.97 Aligned_cols=221 Identities=23% Similarity=0.298 Sum_probs=163.2
Q ss_pred CCCCCeEEeeCCCCCC----------------------CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCcc
Q 020686 40 QTSRPYNLAHRGSNGE----------------------FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDD 97 (322)
Q Consensus 40 ~~~~p~iiaHRG~~~~----------------------~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r 97 (322)
....|.+|||||++.. +||||++||++|++.|+|+||||||+||||++||+||.+|+|
T Consensus 20 ~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~R 99 (309)
T cd08613 20 PGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDC 99 (309)
T ss_pred CCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCcccc
Confidence 4678999999999664 399999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccccccCCcccccceeeccCHHHHccCcccccccCCC-c--ccC--CCccccCHHHHHHHHHhcCCc
Q 020686 98 TTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD-Q--QYN--GKFPIITFEEYISIALDAQRV 172 (322)
Q Consensus 98 ~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~-~--~~~--~~~~iptL~e~l~~~~~~~~~ 172 (322)
+|++. | .|.++|++||++|+++.++.... . .+. +..++|||+|+|+.+++
T Consensus 100 ~T~g~--------------------g-~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~~~~~~~IPTL~EvL~~~~~---- 154 (309)
T cd08613 100 RTDGS--------------------G-VTRDHTMAELKTLDIGYGYTADGGKTFPFRGKGVGMMPTLDEVFAAFPD---- 154 (309)
T ss_pred ccCCC--------------------C-chhhCCHHHHhhCCcCcccccccccccccccCCCCCCcCHHHHHHhcCC----
Confidence 99987 4 79999999999999987653210 1 111 22479999999998842
Q ss_pred ceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccC--hhHHHHHhhcCCCCeEEEEe
Q 020686 173 VGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFA--PTSLVYISNKTDSPKIFLID 250 (322)
Q Consensus 173 ~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~--~~~l~~~~~~~~~~~v~l~~ 250 (322)
.+++||||.+. ....+.+.+++++++.. ++.+.||+ +..+++++++.|...++--.
T Consensus 155 ~~l~IEiK~~~-----------~~~~~~v~~~i~~~~~~-----------r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~ 212 (309)
T cd08613 155 RRFLINFKSDD-----------AAEGELLAEKLATLPRK-----------RLQVLTVYGGDKPIAALRELTPDLRTLSKA 212 (309)
T ss_pred CcEEEEeCCCC-----------ccHHHHHHHHHHhcCcc-----------ceEEEEEECCHHHHHHHHHHCCCCceeccc
Confidence 67999999753 23568899999998864 57777777 77799999998766553111
Q ss_pred ccCccCCCCcccccccccHHHHHHHHhhccccCCCc---cee-eec-CCCCCCC-ChHHHHHHHHcCCeEEEE-------
Q 020686 251 DVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWK---DTV-VPV-ANNYSQT-PTDLVARAHALDLQIHIG------- 317 (322)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~---~~~-~~~-~~~~~~~-~~~~v~~ah~~Gl~V~vW------- 317 (322)
.. ..-.+.++.....+..|.. ..+ .|. ...+... ++.+++++|++|.+|++|
T Consensus 213 ~~---------------~~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~ 277 (309)
T cd08613 213 SM---------------KDCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGE 277 (309)
T ss_pred ch---------------HHHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCc
Confidence 10 0011222221122333332 222 233 1223455 899999999999999999
Q ss_pred ---eCCCC
Q 020686 318 ---NTTTG 322 (322)
Q Consensus 318 ---Tvn~~ 322 (322)
|||+|
T Consensus 278 ~~~~~d~~ 285 (309)
T cd08613 278 FSEGFDTP 285 (309)
T ss_pred ccCCCCCH
Confidence 99987
No 38
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=9.2e-37 Score=276.90 Aligned_cols=222 Identities=36% Similarity=0.483 Sum_probs=171.8
Q ss_pred CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (322)
Q Consensus 43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (322)
.|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++||+++.
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~~~-------------------- 64 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTNGL-------------------- 64 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhccCc--------------------
Confidence 689999999999999999999999999999999999999999999999999999999987
Q ss_pred cceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcch-HHHHH
Q 020686 123 GFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKK-FEDKF 201 (322)
Q Consensus 123 g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~-~~~~v 201 (322)
| .+.++|++|+++++.+.+. ...+ ...+|||+|+++.+ . ..+++++|+|.+..... .. .+..+
T Consensus 65 ~-~~~~~~~~~~~~~~~~~~~---~~~~--~~~ip~l~~~l~~~-~--~~~~l~ieiK~~~~~~~-------~~~~~~~~ 128 (257)
T COG0584 65 G-TVRDLTLAELKRLDAGSFR---IPTF--GEEIPTLEELLEAT-G--RKIGLYIEIKSPGFHPQ-------EGKILAAL 128 (257)
T ss_pred c-ccccCChhhhcCcccCccc---CCCC--CCccCCHHHHHHHh-c--ccCCeEEEecCCCcccc-------hhhhHHHH
Confidence 3 5779999999999955432 2333 35999999999988 3 34899999999764321 12 46677
Q ss_pred HHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCC-CCeEEEEeccCccCCCCcccccccccHHHHHHHHhhcc
Q 020686 202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD-SPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCV 280 (322)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (322)
++.+.+..... ..++++++||+...+.++++..| .+.++++..... |.....+..+..+..++.
T Consensus 129 ~~~~~~~~~~~-------~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~--------~~~~~~~~~l~~~~~~~~ 193 (257)
T COG0584 129 LALLKRYGGTA-------ADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQ--------YDWMELPRALKEVALYAD 193 (257)
T ss_pred HHHHHHhcccC-------CCCceEEEecCHHHHHHHHHhCcCCceEEEEcccch--------hhhhhccchhhHHHhhhc
Confidence 77777664311 12589999999999999999876 677777665310 222233345666777777
Q ss_pred ccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 281 GIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 281 ~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++++....+.+ ..+.+++.+|+.|+.|++||||++
T Consensus 194 ~~~~~~~~~~~-------~~~~~v~~~~~~gl~v~~~tv~~~ 228 (257)
T COG0584 194 GVGPDWAMLAE-------LLTELVDDAHAAGLKVHVWTVNEE 228 (257)
T ss_pred ccCcccceecc-------cccHHHHHHHhCCCeEEEEecCcH
Confidence 77664322211 147899999999999999999975
No 39
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=100.00 E-value=2.7e-36 Score=271.40 Aligned_cols=227 Identities=32% Similarity=0.412 Sum_probs=145.7
Q ss_pred eCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccceeec
Q 020686 49 HRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVD 128 (322)
Q Consensus 49 HRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~ 128 (322)
|||+++.+||||++||+.|++.|+++||+|||+||||+|||+||.++.|+|++. | .|.+
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~--------------------~-~i~~ 59 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTGGD--------------------G-PISD 59 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSSTE--------------------S-BGGG
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecCCC--------------------c-eecc
Confidence 999999999999999999999999999999999999999999999999999987 3 6999
Q ss_pred cCHHHHccCc-ccc--cccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686 129 FTLEELKTLR-AKQ--RYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (322)
Q Consensus 129 ~t~~el~~l~-~~~--~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (322)
+||+||++++ ++. ..+++.+.+....++|||+|+|+.+.+.+ ..+++++|........ ....+.+.++..+
T Consensus 60 ~t~~el~~l~~~~~~~~~~~~~~~~~~~~~i~tl~e~l~~~~~~~--~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~ 133 (256)
T PF03009_consen 60 LTYAELKKLRTLGSKNSPPFRGQRIPGKQKIPTLEEVLELCAKVK--LNLEIKIKSKDEIKDP----EFLKIVKDIVESV 133 (256)
T ss_dssp S-HHHHTTSBESSTTTTCGGTTTTSCTCB--EBHHHHHHHHHTTT--SEEEEEEEECTTSHHH----HHHHHHHHHHHHH
T ss_pred CCHHHHhhCcccccCCcccccccceecccccCcHHHHHHhhhhcc--ceeEEEEeecccccch----hhccccccccccc
Confidence 9999999999 433 34555665555578999999999955433 5666776643211100 0002344555555
Q ss_pred HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCC-CCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCC
Q 020686 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD-SPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGP 284 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 284 (322)
...... .+.+...+++++||++.+++.+++..| .+.+++....... +...........+... .
T Consensus 134 ~~~~~~----~~~~~~~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~--~--- 197 (256)
T PF03009_consen 134 SDILKN----SKQALSRRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEA-------PADISLFELYKFVKCP--G--- 197 (256)
T ss_dssp HHCHHH----HHHHHCTSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHH-------HHH-CCHHHHHHHTTT--E---
T ss_pred cccccc----cccccccccccccCcHHHHHHHHhcCCCceEEEEeccCccc-------cccchhhHHHHhhccc--c---
Confidence 544300 000112489999999999999999987 5666665432110 0000000111222111 1
Q ss_pred CcceeeecCCCCCC--CChHHHHHHHHcCCeEEEEeCCCC
Q 020686 285 WKDTVVPVANNYSQ--TPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 285 ~~~~~~~~~~~~~~--~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
+......+.. .++++|+.+|++|+.|++||||++
T Consensus 198 ----~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtvn~~ 233 (256)
T PF03009_consen 198 ----FLASVWNYADRLGNPRLVQEAHKAGLKVYVWTVNDP 233 (256)
T ss_dssp ----EEEEHGGGGHHCEBHHHHHHHHHTT-EEEEBSB-SH
T ss_pred ----ccccccccccccccHHHHHHHHHCCCEEEEEecCCc
Confidence 1110001111 267899999999999999999985
No 40
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=100.00 E-value=4.1e-33 Score=240.76 Aligned_cols=171 Identities=31% Similarity=0.401 Sum_probs=134.1
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
+|||||+++.+||||++||++|++.|+++||+||++||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd--------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD--------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC---------------------------------
Confidence 58999999999999999999999999999999999999999999999
Q ss_pred eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (322)
+|||+|+|+.+++ .+.+++|+|.+.. ...+++.+++++
T Consensus 48 ------------------------------i~tL~e~l~~~~~---~~~i~leiK~~~~---------~~~~~~~l~~~i 85 (189)
T cd08556 48 ------------------------------IPTLEEVLELVKG---GVGLNIELKEPTR---------YPGLEAKVAELL 85 (189)
T ss_pred ------------------------------CCCHHHHHHhccc---CcEEEEEECCCCC---------chhHHHHHHHHH
Confidence 6699999999965 4889999998642 246899999999
Q ss_pred HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCCC
Q 020686 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW 285 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 285 (322)
++++..+ +++++||++..+.++++..|...+.++....... + .. ........+.++.+
T Consensus 86 ~~~~~~~----------~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~------~----~~-~~~~~~~~~~~v~~- 143 (189)
T cd08556 86 REYGLEE----------RVVVSSFDHEALRALKELDPEVPTGLLVDKPPLD------P----LL-AELARALGADAVNP- 143 (189)
T ss_pred HHcCCcC----------CEEEEeCCHHHHHHHHHhCCCCcEEEEeecCccc------c----hh-hhHHHhcCCeEEcc-
Confidence 9998654 8999999999999999987765444433321100 0 00 00011112222222
Q ss_pred cceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 286 KDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++...++.+++.+|++|++|++||||++
T Consensus 144 ---------~~~~~~~~~i~~~~~~g~~v~~wtvn~~ 171 (189)
T cd08556 144 ---------HYKLLTPELVRAAHAAGLKVYVWTVNDP 171 (189)
T ss_pred ---------ChhhCCHHHHHHHHHcCCEEEEEcCCCH
Confidence 3455789999999999999999999974
No 41
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=99.97 E-value=2.9e-31 Score=228.29 Aligned_cols=155 Identities=28% Similarity=0.335 Sum_probs=121.9
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
+|||||+++.+||||++||+.|++.|+++||+||++|+||+|||+||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~------------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA------------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC-------------------------
Confidence 5899999999999999999999999999999999999999999999999988741
Q ss_pred eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhc----CCcceEeeeeCCcccccccccccCcchHHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDA----QRVVGIYPEMKNPVFINQHVKWADGKKFEDKF 201 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~----~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v 201 (322)
+.++|||+|+|+.++++ +..+.++||+|.+.. ....+++++
T Consensus 56 ---------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~--------~~~~~~~~~ 100 (179)
T cd08555 56 ---------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP--------EYDEFLAKV 100 (179)
T ss_pred ---------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC--------cchHHHHHH
Confidence 14799999999999863 134889999997642 234678899
Q ss_pred HHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccc
Q 020686 202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVG 281 (322)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (322)
++.+++++... ..++++++|| .. +... +. . .
T Consensus 101 ~~~~~~~~~~~-------~~~~v~i~sf----------------~~-~~~~----------~~--------~----~--- 131 (179)
T cd08555 101 LKELRVYFDYD-------LRGKVVLSSF----------------NA-LGVD----------YY--------N----F--- 131 (179)
T ss_pred HHHHHHcCCcc-------cCCCEEEEee----------------cc-cCCC----------hh--------c----c---
Confidence 99999987310 0148999999 00 0000 00 0 0
Q ss_pred cCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686 282 IGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTT 321 (322)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~ 321 (322)
. .....++++|+.+|++|++|++||||+
T Consensus 132 -~-----------~~~~~~~~~v~~~~~~g~~v~~wtvn~ 159 (179)
T cd08555 132 -S-----------SKLIKDTELIASANKLGLLSRIWTVND 159 (179)
T ss_pred -c-----------chhhcCHHHHHHHHHCCCEEEEEeeCC
Confidence 0 023458999999999999999999998
No 42
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=99.95 E-value=1.2e-26 Score=213.00 Aligned_cols=229 Identities=12% Similarity=0.115 Sum_probs=158.4
Q ss_pred HHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccceeeccCHHHHccCcc
Q 020686 60 TAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRA 139 (322)
Q Consensus 60 T~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~ 139 (322)
...+|..|.++|+|+||+|||+||||+|||+||.++.++ ++. + +|.++|++||++++.
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~~~--------------------~-~V~dlTleqL~~l~~ 74 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-GIK--------------------L-LVSDLTAEQLESILD 74 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-CCc--------------------E-EeecCcHHHHhccCC
Confidence 466999999999999999999999999999999999775 443 3 799999999999998
Q ss_pred cccccCCC--------cccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccc------cccCcchHHHHHHHHH
Q 020686 140 KQRYSFRD--------QQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV------KWADGKKFEDKFVDTL 205 (322)
Q Consensus 140 ~~~~~~r~--------~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~------~~~~~~~~~~~v~~~l 205 (322)
+.++.... ..+. +.++|||+|+|+.+. ..++++||||.|....... ...+-+.+++.+++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~~~~pTL~evL~~lp---~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~V 150 (300)
T cd08578 75 YSLDDLNSEISDMVDLKRLL-SSRVVSLETLLELLP---PSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVV 150 (300)
T ss_pred cccccccccccccchhhhhc-CCcCCCHHHHHHhhc---cCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHH
Confidence 76432100 0122 358999999999984 3599999999998653211 0112357899999999
Q ss_pred HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCC-CCeEEEEeccCccC----------------CCCccccccccc
Q 020686 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD-SPKIFLIDDVDILT----------------EDTNQSYSEITS 268 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~-~~~v~l~~~~~~~~----------------~~~~~~~~~~~~ 268 (322)
-++.....- +.-..++|+|+||||++|..++-+.| +|..++........ ......|.+...
T Consensus 151 f~har~~~~--~~~~~R~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~ 228 (300)
T cd08578 151 FDHARYLRH--TPGSTRSIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRS 228 (300)
T ss_pred HHHhhhhcc--cCCCCCceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchh
Confidence 877421000 00012589999999999999996654 67766655442110 011113444333
Q ss_pred HHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCC
Q 020686 269 DAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTT 320 (322)
Q Consensus 269 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn 320 (322)
. .++++..+|...+..+.... .+-+...|.+|+.+|++|+-+.+|+-+
T Consensus 229 ~-Si~~Av~fA~~~nL~Giv~~---~~~L~~~P~lV~~ik~~GL~lv~~g~~ 276 (300)
T cd08578 229 R-SIKEAVRFAKNNNLLGLILP---YSLLNIVPQLVESIKSRGLLLIASGEP 276 (300)
T ss_pred h-hHHHHHHHHHHcCCcEEEec---HHHHhhChHHHHHHHHcCCEEEEECCC
Confidence 2 45666667765554322221 133567899999999999999999864
No 43
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.92 E-value=2.3e-25 Score=208.71 Aligned_cols=221 Identities=26% Similarity=0.350 Sum_probs=161.5
Q ss_pred CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (322)
Q Consensus 43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (322)
...+|+|||+++.+||||++||++|++.|+|.|||||++|+||++|++||.+..|++++..
T Consensus 68 ~~~i~~~rga~g~~penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~------------------- 128 (341)
T KOG2258|consen 68 GWLIIAHRGASGDAPENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTGVPE------------------- 128 (341)
T ss_pred CceeEeccCCCCCCCcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeeccee-------------------
Confidence 6899999999999999999999999999999999999999999999999999999999873
Q ss_pred cceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHH
Q 020686 123 GFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFV 202 (322)
Q Consensus 123 g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~ 202 (322)
.+.++||.|++++.....+++.... -...++|+|+|....+... ++.+.-|.| ..+.+.++
T Consensus 129 --~~~~lt~~e~~~l~~~~~~~~~~~~-~~~~~~~~l~e~v~~~~~~--n~~~l~d~~--------------~~~~~~vl 189 (341)
T KOG2258|consen 129 --IVFDLTWMELRKLGPKIENPFAGPI-ITLEKLLTLAEAVASVVGN--NVAMLNDVK--------------LLVVDKVL 189 (341)
T ss_pred --eeccCCHHHHhccCccccCcccccc-cchhhhccHHHHHHHHHcC--Chhhhhhhh--------------hhhHHHHH
Confidence 4899999999999988765431111 1235899999999888754 244555555 14678888
Q ss_pred HHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhcccc
Q 020686 203 DTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGI 282 (322)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 282 (322)
+.+++.+....+ .+++++|||++.++.++++..+. +++++. +. ++. ....+.++.++.++
T Consensus 190 ~~l~~~~~~~~~------~~kv~v~s~~~~~l~~~~~~~~~---~~i~~~-~~-------~~~---ls~~~dik~~~~~~ 249 (341)
T KOG2258|consen 190 EALKNATSDFSL------YDKVLVQSFNPIVLYRLKKLDPF---ILIGDT-WR-------FTF---LSGIEDIKKRAFAV 249 (341)
T ss_pred HHHHHHhcCCCc------cceEEEEecCcHHHHHhccCCce---EEecce-ec-------chh---hccchhhhccccee
Confidence 888887665431 35899999999999999998766 222221 10 000 01123455556666
Q ss_pred CCCcceeeecCCCCCC-CChHHHHHHHHcCCeEEEEeCCC
Q 020686 283 GPWKDTVVPVANNYSQ-TPTDLVARAHALDLQIHIGNTTT 321 (322)
Q Consensus 283 ~~~~~~~~~~~~~~~~-~~~~~v~~ah~~Gl~V~vWTvn~ 321 (322)
..+...+.+....... ....++...++.++.|+++..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~ 289 (341)
T KOG2258|consen 250 VSSKLAIFPVSDSLVLAITKNVVAPLQKLNLVVYVEVFNN 289 (341)
T ss_pred eechHHHHHHHHHHhhhhhcceeeehhcCCcEEEEEEeec
Confidence 6666555554222222 23467888888888888887764
No 44
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.88 E-value=1.4e-21 Score=166.96 Aligned_cols=154 Identities=21% Similarity=0.260 Sum_probs=112.0
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (322)
+||||| ||+.||++|++. |+||+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~----------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK----------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC-----------------------------
Confidence 589999 999999999998 9999999999 9999999999883
Q ss_pred eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (322)
Q Consensus 126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (322)
++|||+|+|+.+.+ ..+++|||.+ .+++++.+++
T Consensus 42 -----------------------------~~PtLeEvL~~~~~----~~l~inIK~~-------------~l~~~l~~li 75 (192)
T cd08584 42 -----------------------------NGELLEDWLKEYNH----GTLILNIKAE-------------GLELRLKKLL 75 (192)
T ss_pred -----------------------------CCCCHHHHHHhccc----ccEEEEECch-------------hHHHHHHHHH
Confidence 35899999998853 3588999952 4789999999
Q ss_pred HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCCC
Q 020686 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW 285 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 285 (322)
+++++.+ +++|+||++..+.+++.--+...+-..+.. .. ..++.-+...-+.|
T Consensus 76 ~~~~~~~----------~vi~ssf~~~~l~~~~~~~~~i~tr~Se~E-------------~~----~~~~~~~~~~~~VW 128 (192)
T cd08584 76 AEYGITN----------YFFLDMSVPDIIKYLENGEKRTATRVSEYE-------------PI----PTALSLYEKADWVW 128 (192)
T ss_pred HhcCCcc----------eEEEEcCCHHHHHHHhcCCCeeEEeecccc-------------cc----hHHHHhhccccEEE
Confidence 9999864 899999999999999874321111111100 00 01111111111233
Q ss_pred cceeeecCCCCCCCChHHHHHHHHcCCeEEE
Q 020686 286 KDTVVPVANNYSQTPTDLVARAHALDLQIHI 316 (322)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~v 316 (322)
.+.+ ...-++.+.++...++|.+|..
T Consensus 129 ~D~f-----~~~~~~~~~~~~~~~~~~~~c~ 154 (192)
T cd08584 129 IDSF-----TSLWLDNDLILKLLKAGKKICL 154 (192)
T ss_pred Eecc-----cccCCCHHHHHHHHHCCcEEEE
Confidence 3332 3455688999999999998864
No 45
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.27 E-value=2.1e-11 Score=108.43 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=71.3
Q ss_pred HHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccceeeccCHHHHccCcccccc
Q 020686 64 YMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRY 143 (322)
Q Consensus 64 f~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~ 143 (322)
|..|++.||++||.||+++ ||+++|.||..+-+. +. -+.++++++|.++.....
T Consensus 15 l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~-~~-----------------------tl~~Lyl~pL~~~l~~~n- 68 (228)
T cd08577 15 LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSP-AR-----------------------TLESLYLDPLLEILDQNN- 68 (228)
T ss_pred hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCc-cC-----------------------CHHHHhHHHHHHHHHHcC-
Confidence 6779999999999999999 999999999988766 21 388999999988654321
Q ss_pred cCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCC
Q 020686 144 SFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKG 212 (322)
Q Consensus 144 ~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 212 (322)
+ ... ......+.++||+|.... ..-.++..+++.+++.++..
T Consensus 69 --------~--~~~---------~~~~~~l~LlIDiKt~g~--------~t~~~l~~~L~~~~~~~~~~ 110 (228)
T cd08577 69 --------G--QAY---------NDPEQPLQLLIDIKTDGE--------STYPALEEVLKPYIDIGYLS 110 (228)
T ss_pred --------C--CCC---------CCCCCceEEEEEECCCCh--------HHHHHHHHHHHHHHhcCcee
Confidence 1 111 222345899999998652 12356778888888887753
No 46
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.67 E-value=1e-07 Score=83.92 Aligned_cols=43 Identities=30% Similarity=0.356 Sum_probs=40.3
Q ss_pred CCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686 54 GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD 96 (322)
Q Consensus 54 ~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~ 96 (322)
-..+|||+.||++|++.|+++||+||+-++||+|||+||.++.
T Consensus 25 Ql~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 25 QLSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred ccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 4778999999999999999999999999999999999998773
No 47
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=98.60 E-value=4.1e-07 Score=81.99 Aligned_cols=43 Identities=28% Similarity=0.316 Sum_probs=36.4
Q ss_pred EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeE-EEEeCCCC
Q 020686 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVL-ICHHDVFL 95 (322)
Q Consensus 46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~-Vv~HD~~l 95 (322)
+|||| =||+..+..++..||..||+||...++|.+ ..+||.-.
T Consensus 2 ~iaHm-------Vn~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pc 45 (265)
T cd08576 2 AIAHM-------VNDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPC 45 (265)
T ss_pred cchhh-------hccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCcc
Confidence 46776 489999999999999999999999999887 56777544
No 48
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.57 E-value=2.5e-07 Score=81.25 Aligned_cols=42 Identities=29% Similarity=0.348 Sum_probs=39.9
Q ss_pred CCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 54 GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 54 ~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
-..+|||+.+|.+|++.|++.||+||+-++||+|||+|+.++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tl 66 (229)
T cd08627 25 QFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTL 66 (229)
T ss_pred ccCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcC
Confidence 467899999999999999999999999999999999999887
No 49
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=98.05 E-value=4.8e-07 Score=87.30 Aligned_cols=61 Identities=30% Similarity=0.363 Sum_probs=52.7
Q ss_pred CCCCCeEEeeCCCCC-------CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccC
Q 020686 40 QTSRPYNLAHRGSNG-------EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100 (322)
Q Consensus 40 ~~~~p~iiaHRG~~~-------~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~ 100 (322)
+...-+.++|||... ...|||+..+..+++.|+|++|+|||+|+|.++|++||..+...-.
T Consensus 321 ~~~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad~ve~dvqlt~D~~~vvyh~f~~~~~~~ 388 (417)
T KOG2421|consen 321 KNGLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGADLVEMDVQLTKDLVPVVYHDFVLLVSVI 388 (417)
T ss_pred ccchhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhhHHHhhcccccCCceeeeccceeEEeec
Confidence 345567799999843 4789999999999999999999999999999999999988866533
No 50
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=97.94 E-value=7.4e-05 Score=61.15 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=39.9
Q ss_pred CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 53 NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 53 ~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
...+.+|+..+|..+++.|++++|+||+.++||+++++|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 4577899999999999999999999999999999999999765
No 51
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=97.87 E-value=1.5e-05 Score=71.74 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=38.0
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD 96 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~ 96 (322)
..-+-|+.+|.+|++.|+++||+||+-++||+|||+|+.++-
T Consensus 26 l~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tlt 67 (260)
T cd08597 26 LRGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTLT 67 (260)
T ss_pred ecCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCccc
Confidence 445668899999999999999999999999999999998763
No 52
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=97.39 E-value=0.00092 Score=58.96 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=37.1
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
..-+.|..+|.+|+..|++.||+|++=-.||+|||.|..++
T Consensus 26 l~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 26 LLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 45577889999999999999999999999999999997765
No 53
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=97.29 E-value=0.0013 Score=58.91 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=41.6
Q ss_pred CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
.++.+..||. ...+-|..+|..|+..|++.||+|++=-.||+|||.|..++
T Consensus 16 SHNTYL~g~Q----l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 16 SHNTYLSGDQ----LMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred CccccccCCc----cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 3444555443 44566789999999999999999999999999999998776
No 54
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=97.26 E-value=0.0015 Score=58.71 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=36.9
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
..-+-|..+|.+|+..|+..||+|++=-.||+|||.|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 26 LKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 34467799999999999999999999999999999998766
No 55
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=97.25 E-value=0.0015 Score=58.82 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=36.7
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
..-+-|..+|.+|+..|++.||+|++--.||+|||.|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 26 LRGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 34466899999999999999999999999999999998766
No 56
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=97.22 E-value=0.0017 Score=58.13 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=40.6
Q ss_pred CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
.++.+..||. ..-+-|..+|.+|+..|++.||+|++--.||+|||.|-.++
T Consensus 16 SHNTYL~g~Q----l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 16 SHNTYLTGDQ----LLSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred CCCccccCCc----ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 3444444443 33456789999999999999999999999999999997665
No 57
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=97.20 E-value=0.0019 Score=58.14 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=41.6
Q ss_pred CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
.++.+..+|. ..-+-+..+|.+|+..|++.||+|++--.||+|||.|-.++
T Consensus 16 SHNTYL~g~Q----l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 16 SHNTYLVSDQ----LVGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred cccccccCCc----ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence 3444444443 44578899999999999999999999999999999997766
No 58
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=97.13 E-value=0.0023 Score=57.75 Aligned_cols=41 Identities=29% Similarity=0.380 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
..-+-|..+|.+|+..|++.||+|++--.||+|||.|-.++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 26 LKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 44567899999999999999999999999999999997665
No 59
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=97.09 E-value=0.0026 Score=57.22 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=36.0
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcC--CCeEEEEeCCCC
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFL 95 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTk--Dg~~Vv~HD~~l 95 (322)
..-+-|..+|.+|+..|++.||+||+=-. ||+|||.|-.++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 26 FGGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred ccCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence 44567899999999999999999999865 899999998776
No 60
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=96.80 E-value=0.066 Score=48.06 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeeEcC------CCeEEEEeCCCC
Q 020686 58 EETAAAYMRAIEEGADFIETDILASK------DGVLICHHDVFL 95 (322)
Q Consensus 58 ENT~~Af~~A~~~G~d~iE~DV~lTk------Dg~~Vv~HD~~l 95 (322)
-|+.+.+..|+...+.+||.||.+-+ +++||..|.+..
T Consensus 11 vNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~~ 54 (244)
T PF10223_consen 11 VNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPAT 54 (244)
T ss_pred cCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCCC
Confidence 48899999999988999999999984 788999887543
No 61
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=96.66 E-value=0.0024 Score=57.48 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=37.6
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD 96 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~ 96 (322)
..-+-|..+|.+|+..|++.||+|++--.||+|||.|-.++-
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlt 67 (258)
T cd08630 26 IGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTLT 67 (258)
T ss_pred ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCccc
Confidence 344578999999999999999999999999999999998764
No 62
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=96.64 E-value=0.003 Score=55.83 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
...+-|..+|.+|++.|++.||+|++=-.||+|||.|-.++
T Consensus 26 l~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 26 LTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 45667899999999999999999999999999999998766
No 63
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=96.62 E-value=0.0033 Score=55.73 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
..-+-|..+|..|++.|+..||+||+=..||+|+|.|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 26 LSSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred cCCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 34466788999999999999999999999999999998764
No 64
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=96.60 E-value=0.0025 Score=57.24 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
..-+-|..+|..|+..|++.||+|++=-.||+|||.|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 26 LRSESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred eecCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence 34466789999999999999999999999999999998776
No 65
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=96.59 E-value=0.003 Score=56.81 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=37.5
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD 96 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~ 96 (322)
..-+-|..+|.+|+..|++.||+|++--.||+|||.|-.++-
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlt 67 (258)
T cd08629 26 LTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFT 67 (258)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCCc
Confidence 445668999999999999999999999999999999998763
No 66
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=96.47 E-value=0.0042 Score=55.12 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=37.2
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD 96 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~ 96 (322)
..-+-|..+|.+|+..|+..||+|++=-.||+|||.|-.++.
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~t 67 (231)
T cd08598 26 LAGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTLT 67 (231)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCCc
Confidence 345678999999999999999999999989999999987763
No 67
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.33 E-value=0.0051 Score=55.42 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=41.0
Q ss_pred CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcC--CCeEEEEeCCCCc
Q 020686 41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFLD 96 (322)
Q Consensus 41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTk--Dg~~Vv~HD~~l~ 96 (322)
.++.+..||. ..-+-|.++|.+|+..|+..||+|++=-. ||+|||.|..++-
T Consensus 16 SHNTYL~g~Q----l~g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tlt 69 (258)
T cd08623 16 SHNTYLTAGQ----LAGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTMT 69 (258)
T ss_pred CccccccCCc----cCCccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCcc
Confidence 4444555443 33456789999999999999999999876 6899999998774
No 68
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.30 E-value=0.0051 Score=55.49 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=36.5
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcC--CCeEEEEeCCCCc
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFLD 96 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTk--Dg~~Vv~HD~~l~ 96 (322)
..-+-|..+|.+|+..|+..||+|++=-. ||+|||.|..++-
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tlt 69 (261)
T cd08624 26 FSGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMT 69 (261)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCcc
Confidence 44566899999999999999999999764 7899999998873
No 69
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=96.13 E-value=0.0074 Score=54.31 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=37.2
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCC--CeEEEEeCCCCc
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKD--GVLICHHDVFLD 96 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkD--g~~Vv~HD~~l~ 96 (322)
..-+-|.++|.+|+..|++.||+|++=-.| |+|||.|-.++-
T Consensus 26 l~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tlt 69 (257)
T cd08591 26 FGGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTMC 69 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCCc
Confidence 445678899999999999999999999885 999999998774
No 70
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=95.99 E-value=0.0089 Score=54.01 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcC--CCeEEEEeCCCCc
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFLD 96 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTk--Dg~~Vv~HD~~l~ 96 (322)
..-+-|.++|..|+..|+..||+|++=-. |++|||.|..++-
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~t 69 (258)
T cd08625 26 LTGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTMT 69 (258)
T ss_pred cCCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCccc
Confidence 44567799999999999999999999763 6899999998874
No 71
>PLN02230 phosphoinositide phospholipase C 4
Probab=95.70 E-value=0.041 Score=55.44 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=41.1
Q ss_pred EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 47 iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
-+|.-. .-..-+.|.++|.+|+..|+..||+|++--.+|.|||.|-.++
T Consensus 128 sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~ 179 (598)
T PLN02230 128 TGHNSYLTGNQLSSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTL 179 (598)
T ss_pred cccCccccCCcccCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCC
Confidence 477743 2355667899999999999999999999888899999998776
No 72
>PLN02952 phosphoinositide phospholipase C
Probab=94.78 E-value=0.12 Score=52.11 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=39.6
Q ss_pred EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCC-eEEEEeCCCC
Q 020686 47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDG-VLICHHDVFL 95 (322)
Q Consensus 47 iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg-~~Vv~HD~~l 95 (322)
-+|.-. .-...+-|..+|.+|+..|+..||+|++--.|| .|||+|-.++
T Consensus 136 SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ 188 (599)
T PLN02952 136 TGHNSYLTGNQLSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTL 188 (599)
T ss_pred ccccccccCCccCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCcc
Confidence 477743 235567889999999999999999999977765 4899998766
No 73
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.64 E-value=0.028 Score=57.47 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=56.5
Q ss_pred HHHHHHHhhcCCCCCCCCCCCcccCcCCCC-CCCCeE-----EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeE
Q 020686 11 LLFLSLIAGCAARPLYPLPSKLDIHKQPLQ-TSRPYN-----LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILA 81 (322)
Q Consensus 11 ~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~-~~~p~i-----iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~l 81 (322)
=++.+|+|-=.+-.... ....... +++|+. -.|.-. .-..-|.|++||.+|+++|+..||+|.+=
T Consensus 286 EFv~fLFSreNslWd~k------~d~V~~d~Mn~PLShYWIsSSHNTYLTGDQlrSESSleaYar~LrMGCRCIELDCWd 359 (1267)
T KOG1264|consen 286 EFVTFLFSRENSLWDSK------YDAVDMDDMNNPLSHYWISSSHNTYLTGDQLRSESSLEAYARCLRMGCRCIELDCWD 359 (1267)
T ss_pred HHHHHHhhccccccccc------ccccchhhhcCcchhheeeccCcceecccccccccCHHHHHHHHHhCCeEEEeeccc
Confidence 35566666544433221 1122333 666643 356543 23678999999999999999999999999
Q ss_pred cCCCeEEEEeCCCC
Q 020686 82 SKDGVLICHHDVFL 95 (322)
Q Consensus 82 TkDg~~Vv~HD~~l 95 (322)
-.||.||++|-.|+
T Consensus 360 Gpd~~pvIyHG~T~ 373 (1267)
T KOG1264|consen 360 GPDGKPVIYHGHTR 373 (1267)
T ss_pred CCCCCceEEeccce
Confidence 99999999999876
No 74
>PLN02222 phosphoinositide phospholipase C 2
Probab=94.00 E-value=0.21 Score=50.38 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=38.1
Q ss_pred EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCe-EEEEeCCCC
Q 020686 47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGV-LICHHDVFL 95 (322)
Q Consensus 47 iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~-~Vv~HD~~l 95 (322)
-+|.-. .-..-+-|..+|.+|+..|+..||+|++=-.||. |+|.|-.++
T Consensus 116 SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tl 168 (581)
T PLN02222 116 TGHNSYLTGNQLSSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTL 168 (581)
T ss_pred cccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCcc
Confidence 467743 2345677889999999999999999999766665 578897665
No 75
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=93.63 E-value=0.062 Score=54.72 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=47.2
Q ss_pred CCCCCCCeE-----EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686 38 PLQTSRPYN-----LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD 96 (322)
Q Consensus 38 ~~~~~~p~i-----iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~ 96 (322)
...++.|+. -+|.-. .-..-+.|+.+|..|++.|+..||+|++--.+|.|||.|-.|+-
T Consensus 288 ~qDM~qPLsHYFI~SSHNTYLtg~Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~TlT 354 (746)
T KOG0169|consen 288 HQDMDQPLSHYFISSSHNTYLTGDQLGGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTLT 354 (746)
T ss_pred hhcccCcchhheEeccccceecccccCCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCcccc
Confidence 344566643 366654 22556889999999999999999999999999999999999874
No 76
>PLN02228 Phosphoinositide phospholipase C
Probab=93.16 E-value=0.11 Score=52.22 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=40.2
Q ss_pred EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCe-EEEEeCCCCc
Q 020686 47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGV-LICHHDVFLD 96 (322)
Q Consensus 47 iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~-~Vv~HD~~l~ 96 (322)
-.|.-. .-..-+-|..+|.+|+..|+..||+|++=-.||. |||.|-.++-
T Consensus 119 SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~t 172 (567)
T PLN02228 119 TGHNSYLTGNQVNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTLT 172 (567)
T ss_pred cccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCccc
Confidence 367644 2355677899999999999999999999766665 8999998774
No 77
>PLN02223 phosphoinositide phospholipase C
Probab=90.98 E-value=0.28 Score=48.81 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=38.2
Q ss_pred EeeCCC-CC--CCch-hHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686 47 LAHRGS-NG--EFPE-ETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD 96 (322)
Q Consensus 47 iaHRG~-~~--~~pE-NT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~ 96 (322)
-+|.-. .| ..-+ .|..+|.+|+..|+..||+|++-..++.++|.|-.++-
T Consensus 119 SSHNTYL~g~Ql~~~~ss~e~y~~aL~~GcRcvElD~W~~~~~~~~v~hG~tlt 172 (537)
T PLN02223 119 TSLKSYFTGNNVFGKLYSIEPIIDALEQGVRVVELDLLPDGKDGICVRPKWNFE 172 (537)
T ss_pred ccccccccCCcccCCcccHHHHHHHHHcCCcEEEEEecCCCCCCCeEeeCCcee
Confidence 366644 11 2333 88999999999999999999996566667899988763
No 78
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=90.19 E-value=0.47 Score=43.53 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 56 ~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
+-.+...+|..+++.|++++|+||+-.+|+.|+|+|-.++
T Consensus 32 ~~~tq~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~ 71 (274)
T cd00137 32 WGLTQTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTF 71 (274)
T ss_pred cCcCcHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCcc
Confidence 3578899999999999999999999999999999998654
No 79
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=89.05 E-value=0.23 Score=28.04 Aligned_cols=21 Identities=33% Similarity=0.736 Sum_probs=17.0
Q ss_pred CccchhHHHHHHHHHHhhcCC
Q 020686 2 GISSTCFIPLLFLSLIAGCAA 22 (322)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~c~~ 22 (322)
.|..-+++++++++.++||++
T Consensus 5 ~mmKkil~~l~a~~~LagCss 25 (25)
T PF08139_consen 5 SMMKKILFPLLALFMLAGCSS 25 (25)
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 355667888999999999985
No 80
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=87.26 E-value=1.1 Score=36.81 Aligned_cols=40 Identities=15% Similarity=0.377 Sum_probs=31.7
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 56 ~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
+..+...++...++.|+.++|+||+...++.++++|....
T Consensus 24 ~~~~Q~~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~ 63 (146)
T PF00388_consen 24 WSKTQSWSIREQLESGIRYLDLRVWDGNDGELVVYHGITS 63 (146)
T ss_dssp HC-B-SHHHHHHHHTT--EEEEEEEEETTSSEEEEETTSE
T ss_pred ccCcchHhHHHHHhccCceEEEEEEcCCCCceEEEeCCEe
Confidence 3567788999999999999999999999999999996544
No 81
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=82.03 E-value=3.4 Score=38.73 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=32.6
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeeEcCC--------------------CeEEEEeCCCCc
Q 020686 56 FPEETAAAYMRAIEEGADFIETDILASKD--------------------GVLICHHDVFLD 96 (322)
Q Consensus 56 ~pENT~~Af~~A~~~G~d~iE~DV~lTkD--------------------g~~Vv~HD~~l~ 96 (322)
..+|+-..+..+++.|+..+|+||+-..+ +.+-|+|-.+++
T Consensus 42 ~~~~s~~~i~~QLd~GvR~LELDv~~d~~gg~~a~P~~~~~~~~~~~~~~g~~V~H~~~~d 102 (324)
T cd08589 42 GLDYSHPPLADQLDSGVRQLELDVWADPEGGRYAHPLGLAPDDAAVMKKPGWKVSHIPDLD 102 (324)
T ss_pred cccCCCccHHHHHhhCcceEEEEEeecCCcccccccccccccccccccCCCeEEEcCCCcC
Confidence 34577889999999999999999998654 456777776663
No 82
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=70.12 E-value=2.2 Score=41.60 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=42.7
Q ss_pred eEEeeCCCCC-----------CCchhHHHH-HHHHHHcCCCEEEeeeeEc-CCCe-EEEEeCCC
Q 020686 45 YNLAHRGSNG-----------EFPEETAAA-YMRAIEEGADFIETDILAS-KDGV-LICHHDVF 94 (322)
Q Consensus 45 ~iiaHRG~~~-----------~~pENT~~A-f~~A~~~G~d~iE~DV~lT-kDg~-~Vv~HD~~ 94 (322)
.+++|||-.. ..-+|+..+ |..|...+.+.+|+|++.+ +|++ +|+.|++-
T Consensus 43 ~~~~~~~v~~n~~~~~~~~~~~vg~~~~lg~f~~~~~~pls~~~~~~~~~~~~~~~~v~~~~~~ 106 (417)
T KOG2421|consen 43 PVIGHFGVGKNQLLYPDEYVAVVGENSALGNFNSAAALPLSFIEFDVQRTNRDWVAPVIIPRNI 106 (417)
T ss_pred eeecccccceecccCCcceeEeecccccccccchhhhcCccccchheeeeeccccceeEecccc
Confidence 4799999732 345899999 9999999999999999999 9999 88888853
No 83
>PRK11372 lysozyme inhibitor; Provisional
Probab=67.22 E-value=6.7 Score=30.73 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=14.9
Q ss_pred CCccchhHHHHHHHHHHhhcCCCCC
Q 020686 1 MGISSTCFIPLLFLSLIAGCAARPL 25 (322)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~c~~~~~ 25 (322)
|+|.. +++++++++|+||++...
T Consensus 1 ~~mk~--ll~~~~~~lL~gCs~~~~ 23 (109)
T PRK11372 1 MSMKK--LLIICLPVLLTGCSAYNQ 23 (109)
T ss_pred CchHH--HHHHHHHHHHHHhcCCcc
Confidence 56666 334555666899998543
No 84
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=61.86 E-value=7.1 Score=36.48 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=16.5
Q ss_pred hHHHHHHHHcCCeEEEEe
Q 020686 301 TDLVARAHALDLQIHIGN 318 (322)
Q Consensus 301 ~~~v~~ah~~Gl~V~vWT 318 (322)
..+|+++|++|++||+|.
T Consensus 73 ~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 73 EFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 478899999999999997
No 85
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=61.37 E-value=9.1 Score=22.60 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHcCCCEEEee
Q 020686 59 ETAAAYMRAIEEGADFIETD 78 (322)
Q Consensus 59 NT~~Af~~A~~~G~d~iE~D 78 (322)
|+.++++.++++|+|+|=.|
T Consensus 8 d~~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 8 DKPASWRELLDLGVDGIMTD 27 (30)
T ss_dssp -SHHHHHHHHHHT-SEEEES
T ss_pred CCHHHHHHHHHcCCCEeeCC
Confidence 55788999999999999766
No 86
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=59.66 E-value=49 Score=28.04 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=22.7
Q ss_pred CCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686 296 YSQTPTDLVARAHALDLQIHIGNTTT 321 (322)
Q Consensus 296 ~~~~~~~~v~~ah~~Gl~V~vWTvn~ 321 (322)
+...++..++.+++.|+.+..|+++.
T Consensus 105 ~G~~~~~~~~~l~~~G~~~v~w~~~~ 130 (191)
T TIGR02764 105 SGAFNKAVLKAAESLGYTVVHWSVDS 130 (191)
T ss_pred CcCCCHHHHHHHHHcCCeEEEecCCC
Confidence 44568899999999999999999975
No 87
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=58.47 E-value=13 Score=20.81 Aligned_cols=17 Identities=18% Similarity=0.514 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhcCCCC
Q 020686 8 FIPLLFLSLIAGCAARP 24 (322)
Q Consensus 8 ~~~~~~~~l~~~c~~~~ 24 (322)
++++..++.++||+..-
T Consensus 3 ~~~~~~~~~LsgCG~KG 19 (24)
T PF13627_consen 3 LLLLALALALSGCGQKG 19 (24)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 45666678889999853
No 88
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=57.61 E-value=18 Score=38.16 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=39.3
Q ss_pred CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEc--CCCeEEEEeCCCC
Q 020686 41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILAS--KDGVLICHHDVFL 95 (322)
Q Consensus 41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lT--kDg~~Vv~HD~~l 95 (322)
.++.+..||.=+. --+.+=|+.++-.|+..||+|.+=- +|++||+-|-.+.
T Consensus 328 SHNTYlTg~Ql~g----~sSvEmYRQvLLsGcRCVELDcWdgk~~d~EPvITHG~tm 380 (1189)
T KOG1265|consen 328 SHNTYLTGGQLGG----KSSVEMYRQVLLSGCRCVELDCWDGKGEDEEPVITHGFTM 380 (1189)
T ss_pred cccceeecccccC----cchHHHHHHHHHhcCceEEeeeecCCCCCCCceeecccch
Confidence 4555555554221 2289999999999999999999964 5889999998876
No 89
>PRK11443 lipoprotein; Provisional
Probab=55.21 E-value=11 Score=30.28 Aligned_cols=18 Identities=39% Similarity=0.763 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhhcCCCC
Q 020686 7 CFIPLLFLSLIAGCAARP 24 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~~ 24 (322)
.+++++++++|+||++.+
T Consensus 3 ~~~~~~~~~lLsgCa~~~ 20 (124)
T PRK11443 3 KFIAPLLALLLSGCQIDP 20 (124)
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 456667777999999965
No 90
>PRK15396 murein lipoprotein; Provisional
Probab=51.42 E-value=13 Score=27.30 Aligned_cols=17 Identities=29% Similarity=0.422 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHhhcCCC
Q 020686 7 CFIPLLFLSLIAGCAAR 23 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~ 23 (322)
+..+++.++||+||++.
T Consensus 8 l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 8 LGAVILGSTLLAGCSSN 24 (78)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 33444556789999984
No 91
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=51.28 E-value=12 Score=29.46 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=15.6
Q ss_pred CCccchhHHHHHHHHHHhhcCC
Q 020686 1 MGISSTCFIPLLFLSLIAGCAA 22 (322)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~c~~ 22 (322)
|.+.....++++++++++||++
T Consensus 1 m~~~~~~~~~~~~~~~LsgCs~ 22 (113)
T PRK11548 1 MRCKTLTAAAAVLLMLTAGCST 22 (113)
T ss_pred CcchHHHHHHHHHHHHHcccCC
Confidence 5566555656666788899976
No 92
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=50.43 E-value=29 Score=32.96 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=40.8
Q ss_pred CHHHHHHHHHhc-CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHH
Q 020686 158 TFEEYISIALDA-QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVY 236 (322)
Q Consensus 158 tL~e~l~~~~~~-~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~ 236 (322)
.|+++++.++++ .....+.+|... ..+.+..+++++++|+... .+=+|||+..+|+.
T Consensus 74 ~l~~ll~~i~~~~~~~~eitiE~nP-------------~~lt~e~l~~lk~~G~nri---------siGvQS~~d~vL~~ 131 (353)
T PRK05904 74 LLDILLSTIKPYVDNNCEFTIECNP-------------ELITQSQINLLKKNKVNRI---------SLGVQSMNNNILKQ 131 (353)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecc-------------CcCCHHHHHHHHHcCCCEE---------EEecccCCHHHHHH
Confidence 356677766543 223456666532 3455788999999997642 35699999999988
Q ss_pred Hhh
Q 020686 237 ISN 239 (322)
Q Consensus 237 ~~~ 239 (322)
+.+
T Consensus 132 l~R 134 (353)
T PRK05904 132 LNR 134 (353)
T ss_pred cCC
Confidence 876
No 93
>PRK09810 entericidin A; Provisional
Probab=50.07 E-value=12 Score=23.82 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=13.6
Q ss_pred chhHHHHHHHHHHhhcCCCCC
Q 020686 5 STCFIPLLFLSLIAGCAARPL 25 (322)
Q Consensus 5 ~~~~~~~~~~~l~~~c~~~~~ 25 (322)
..+.++++.+++++||+--..
T Consensus 4 k~~~l~~~~~~~L~aCNTv~G 24 (41)
T PRK09810 4 RLIVLVLLASTLLTGCNTARG 24 (41)
T ss_pred HHHHHHHHHHHHHhhhhhccc
Confidence 344455566678999987443
No 94
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=49.41 E-value=30 Score=32.75 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=41.0
Q ss_pred HHHHHHHHHhc-CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHH
Q 020686 159 FEEYISIALDA-QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYI 237 (322)
Q Consensus 159 L~e~l~~~~~~-~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~ 237 (322)
|+++++.+.+. .....+.+|.- +..+.+..++.++++|+.+. .+=||||++..++.+
T Consensus 70 l~~ll~~i~~~~~~~~eitiE~n-------------P~~~~~e~l~~l~~~GvnRi---------SiGvQS~~~~~L~~l 127 (350)
T PRK08446 70 YEPIFEIISPYLSKDCEITTEAN-------------PNSATKAWLKGMKNLGVNRI---------SFGVQSFNEDKLKFL 127 (350)
T ss_pred HHHHHHHHHHhcCCCceEEEEeC-------------CCCCCHHHHHHHHHcCCCEE---------EEecccCCHHHHHHc
Confidence 67888777653 22345666653 23455677999999998642 456999999999888
Q ss_pred hh
Q 020686 238 SN 239 (322)
Q Consensus 238 ~~ 239 (322)
.+
T Consensus 128 gR 129 (350)
T PRK08446 128 GR 129 (350)
T ss_pred CC
Confidence 65
No 95
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=49.40 E-value=65 Score=31.04 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=21.4
Q ss_pred CChHHHHHHHHcCCeEEEEeCCCC
Q 020686 299 TPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 299 ~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
.+.++++++.++|++..+.|||.|
T Consensus 136 ~~~~li~RA~~aG~~alvlTVD~p 159 (381)
T PRK11197 136 FMRNALERAKAAGCSTLVFTVDMP 159 (381)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCC
Confidence 367899999999999999999987
No 96
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=49.16 E-value=60 Score=31.04 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHH
Q 020686 197 FEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIK 276 (322)
Q Consensus 197 ~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 276 (322)
-+..+.+.-.+.|. ..++|+++...+..+.+..+.+. ++- -|
T Consensus 82 gE~a~AraA~~~g~------------~~~lSt~ss~siEeva~a~~~~~-wfQ------------LY------------- 123 (361)
T cd04736 82 GDLALARAAAKAGI------------PFVLSTASNMSIEDVARQADGDL-WFQ------------LY------------- 123 (361)
T ss_pred HHHHHHHHHHHcCC------------cEEeeCCCCCCHHHHHhhcCCCe-EEE------------EE-------------
Confidence 34566666677765 58889999888888887643222 110 00
Q ss_pred hhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 277 EYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 277 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++ . ..++.++++++.++|++..+-|||.|
T Consensus 124 -------------~~---~-r~~~~~ll~RA~~aG~~alvlTvD~p 152 (361)
T cd04736 124 -------------VV---H-RELAELLVKRALAAGYTTLVLTTDVA 152 (361)
T ss_pred -------------ec---C-HHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 00 1 22367899999999999999999987
No 97
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=48.35 E-value=15 Score=26.53 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=15.9
Q ss_pred cchhHHHHHHHHHHhhcCC
Q 020686 4 SSTCFIPLLFLSLIAGCAA 22 (322)
Q Consensus 4 ~~~~~~~~~~~~l~~~c~~ 22 (322)
..+++...+..++++||++
T Consensus 5 ~m~l~Avvlg~lllAGc~s 23 (78)
T COG4238 5 KMTLGAVVLGSLLLAGCSS 23 (78)
T ss_pred hhhHHHHHHHHHHHHhcch
Confidence 4567788888899999998
No 98
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=48.35 E-value=36 Score=33.19 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCC
Q 020686 195 KKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD 242 (322)
Q Consensus 195 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~ 242 (322)
..+...-++.+++.|..+. .+=||||++++++.+.+..+
T Consensus 133 ~~~~~e~~~~l~~~GvNRi---------SlGVQsf~~~~lk~lgR~h~ 171 (416)
T COG0635 133 GTVEAEKFKALKEAGVNRI---------SLGVQSFNDEVLKALGRIHD 171 (416)
T ss_pred CCCCHHHHHHHHHcCCCEE---------EeccccCCHHHHHHhcCCCC
Confidence 3566777999999998742 46699999999999987643
No 99
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=47.66 E-value=1e+02 Score=28.03 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=22.4
Q ss_pred CCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686 296 YSQTPTDLVARAHALDLQIHIGNTTT 321 (322)
Q Consensus 296 ~~~~~~~~v~~ah~~Gl~V~vWTvn~ 321 (322)
+-..+...++.+++.|+++..||+++
T Consensus 184 ~G~~n~~~~~~l~~~G~~~v~Wsvd~ 209 (268)
T TIGR02873 184 SGSFNDNVVQIAADLQMGTIMWTVDT 209 (268)
T ss_pred CCCCCHHHHHHHHHCCCeEEEeccCC
Confidence 34557899999999999999999975
No 100
>COG5510 Predicted small secreted protein [Function unknown]
Probab=46.86 E-value=15 Score=23.54 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHhhcCC
Q 020686 6 TCFIPLLFLSLIAGCAA 22 (322)
Q Consensus 6 ~~~~~~~~~~l~~~c~~ 22 (322)
.++++++.++++++|+-
T Consensus 8 ~i~~vll~s~llaaCNT 24 (44)
T COG5510 8 LIALVLLASTLLAACNT 24 (44)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 56667777799999965
No 101
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=46.83 E-value=32 Score=27.19 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhcCCCCCCC
Q 020686 9 IPLLFLSLIAGCAARPLYP 27 (322)
Q Consensus 9 ~~~~~~~l~~~c~~~~~~~ 27 (322)
++.+.++++.||++....+
T Consensus 6 ~~~l~~~lLvGCsS~~~i~ 24 (123)
T COG5633 6 LLSLALLLLVGCSSHQEIL 24 (123)
T ss_pred HHHHHHHHhhccCCCCCcc
Confidence 3778889999999966543
No 102
>COG5461 Type IV pili component [Cell motility and secretion]
Probab=46.16 E-value=35 Score=29.57 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCcccCcCCCCCCCCeEEe
Q 020686 8 FIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLA 48 (322)
Q Consensus 8 ~~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~p~iia 48 (322)
.++...++||+||++..+...+. .......+.|++|.
T Consensus 11 VL~~a~~allagCAs~d~~~~~a----ipddyrt~hpI~i~ 47 (224)
T COG5461 11 VLLVAATALLAGCASRDPSTTGA----IPDDYRTRHPIVIR 47 (224)
T ss_pred HHHHHHHHHhhhcccCCccccCC----ccccccCCCCeEee
Confidence 44556678999999877653321 13356677777765
No 103
>PRK11627 hypothetical protein; Provisional
Probab=46.16 E-value=17 Score=31.50 Aligned_cols=19 Identities=37% Similarity=0.753 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHhhcCCCC
Q 020686 6 TCFIPLLFLSLIAGCAARP 24 (322)
Q Consensus 6 ~~~~~~~~~~l~~~c~~~~ 24 (322)
-+++.++.+++|+||++.+
T Consensus 4 klll~l~a~~~L~gCA~~p 22 (192)
T PRK11627 4 KILFPLVALFMLAGCATPS 22 (192)
T ss_pred HHHHHHHHHHHHHhhcCCC
Confidence 4555566678899999974
No 104
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=45.88 E-value=24 Score=32.19 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=28.6
Q ss_pred chhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCC
Q 020686 57 PEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVF 94 (322)
Q Consensus 57 pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~ 94 (322)
..|-..++...++.|++++|+||+... +.+.++|-..
T Consensus 40 ~~nQ~~sI~~QL~~GvR~LdLdv~~~~-~~l~v~Hg~~ 76 (267)
T cd08590 40 DPNQELSITDQLDLGARFLELDVHWTT-GDLRLCHGGD 76 (267)
T ss_pred ccccCcCHHHHHhhCCcEEEEeeeeCC-CCEEEEccCc
Confidence 345666889999999999999999865 5566667543
No 105
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=45.72 E-value=37 Score=32.57 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhc---CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHH
Q 020686 158 TFEEYISIALDA---QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSL 234 (322)
Q Consensus 158 tL~e~l~~~~~~---~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l 234 (322)
.|+++++.+.+. .....+.+|.-. ..+....++.++++|..+. .+=+|||++++|
T Consensus 73 ~L~~ll~~i~~~f~~~~~~eit~E~~P-------------~~i~~e~L~~l~~~Gvnri---------slGvQS~~d~vL 130 (380)
T PRK09057 73 TVAALLDAIARLWPVADDIEITLEANP-------------TSVEAGRFRGYRAAGVNRV---------SLGVQALNDADL 130 (380)
T ss_pred HHHHHHHHHHHhCCCCCCccEEEEECc-------------CcCCHHHHHHHHHcCCCEE---------EEecccCCHHHH
Confidence 567777777642 222346666632 2345577899999998642 456999999999
Q ss_pred HHHhhc
Q 020686 235 VYISNK 240 (322)
Q Consensus 235 ~~~~~~ 240 (322)
+.+.+.
T Consensus 131 ~~l~R~ 136 (380)
T PRK09057 131 RFLGRL 136 (380)
T ss_pred HHcCCC
Confidence 888764
No 106
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=45.47 E-value=36 Score=32.54 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=41.9
Q ss_pred ccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHH
Q 020686 156 IITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLV 235 (322)
Q Consensus 156 iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~ 235 (322)
...|+++++.+... ....+.+|.-. ..+.+..++.+++.|..+. .+=+|||+.+.++
T Consensus 74 ~~~l~~ll~~i~~~-~~~eit~E~~P-------------~~~~~~~l~~l~~~G~nri---------slGvQS~~~~~L~ 130 (370)
T PRK06294 74 PALIQDILKTLEAP-HATEITLEANP-------------ENLSESYIRALALTGINRI---------SIGVQTFDDPLLK 130 (370)
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEeCC-------------CCCCHHHHHHHHHCCCCEE---------EEccccCCHHHHH
Confidence 33567777776543 23456667642 2345677999999998642 4569999999998
Q ss_pred HHhh
Q 020686 236 YISN 239 (322)
Q Consensus 236 ~~~~ 239 (322)
.+.+
T Consensus 131 ~l~R 134 (370)
T PRK06294 131 LLGR 134 (370)
T ss_pred HcCC
Confidence 8765
No 107
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=45.25 E-value=23 Score=30.28 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHhhcCCCCCCC
Q 020686 6 TCFIPLLFLSLIAGCAARPLYP 27 (322)
Q Consensus 6 ~~~~~~~~~~l~~~c~~~~~~~ 27 (322)
-+|+++..+++|+||+..+...
T Consensus 17 k~L~~laa~~lLagC~a~~~tl 38 (204)
T COG3056 17 KILFPLAAIFLLAGCAAPPTTL 38 (204)
T ss_pred HHHHHHHHHHHHHhcCCCCcee
Confidence 3577888889999999965543
No 108
>PLN02535 glycolate oxidase
Probab=44.95 E-value=76 Score=30.38 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.5
Q ss_pred CChHHHHHHHHcCCeEEEEeCCCC
Q 020686 299 TPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 299 ~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++.+++++++++|++..+.|||.|
T Consensus 138 ~~~~ll~RA~~aG~~alvlTvD~p 161 (364)
T PLN02535 138 IAAQLVQRAEKNGYKAIVLTADVP 161 (364)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCC
Confidence 367899999999999999999986
No 109
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=44.73 E-value=23 Score=30.70 Aligned_cols=18 Identities=39% Similarity=0.491 Sum_probs=12.7
Q ss_pred chhHHHHHHHHHHhhcCC
Q 020686 5 STCFIPLLFLSLIAGCAA 22 (322)
Q Consensus 5 ~~~~~~~~~~~l~~~c~~ 22 (322)
..++++++++++|+||+.
T Consensus 3 ~~~~~~~~~~llL~gCa~ 20 (202)
T PRK00022 3 RLLRLLLLAALLLAGCAV 20 (202)
T ss_pred hhHHHHHHHHHHHHhCCC
Confidence 345566666788999984
No 110
>PF10210 MRP-S32: Mitochondrial 28S ribosomal protein S32; InterPro: IPR019346 This entry represents a family of short proteins; each approximately 100 amino acid residues in length. They are identified as the mitochondrial 28S ribosomal proteins S32.
Probab=44.47 E-value=17 Score=27.81 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=13.8
Q ss_pred eeeeEcCCC-eEEEEeCC
Q 020686 77 TDILASKDG-VLICHHDV 93 (322)
Q Consensus 77 ~DV~lTkDg-~~Vv~HD~ 93 (322)
..|.+|.|| ++||+|-.
T Consensus 4 ~~iavT~dG~tIVcwHP~ 21 (96)
T PF10210_consen 4 VEIAVTSDGRTIVCWHPE 21 (96)
T ss_pred eeEEEecCCCEEEEeCCC
Confidence 457899999 89999954
No 111
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=43.43 E-value=30 Score=31.02 Aligned_cols=38 Identities=18% Similarity=0.428 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeeEcC-CCeEEEEeCCCC
Q 020686 58 EETAAAYMRAIEEGADFIETDILASK-DGVLICHHDVFL 95 (322)
Q Consensus 58 ENT~~Af~~A~~~G~d~iE~DV~lTk-Dg~~Vv~HD~~l 95 (322)
.|--..+...++.|++++|+||+... ++.+.++|....
T Consensus 37 ~~Q~~~i~~QL~~GiR~~dlr~~~~~~~~~~~~~H~~~~ 75 (271)
T cd08557 37 KTQDLSITDQLDAGVRYLDLRVAYDPDDGDLYVCHGLFL 75 (271)
T ss_pred hccCCCHHHHHhcCceEEEEEeeeecCCCcEEEEccccc
Confidence 44456788899999999999999987 688888886544
No 112
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=42.53 E-value=85 Score=30.12 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=21.3
Q ss_pred CChHHHHHHHHcCCeEEEEeCCCC
Q 020686 299 TPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 299 ~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++.+++++++++|++..+-|||.|
T Consensus 136 ~~~~li~RA~~aG~~alvlTvD~p 159 (367)
T PLN02493 136 VVEQLVRRAERAGFKAIALTVDTP 159 (367)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCC
Confidence 367899999999999999999987
No 113
>COG3009 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.19 E-value=18 Score=30.93 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCcccCcCCCCCCCCe-EEeeCCCCCCCchh-HHHHHHHHHHcCCCEEEeeeeEcCCCe
Q 020686 9 IPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPY-NLAHRGSNGEFPEE-TAAAYMRAIEEGADFIETDILASKDGV 86 (322)
Q Consensus 9 ~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~p~-iiaHRG~~~~~pEN-T~~Af~~A~~~G~d~iE~DV~lTkDg~ 86 (322)
.+++.+++++||++..+. . +...+....+. +++-+|+....-|- .++.|- ..++| |..|.|.+
T Consensus 5 l~~~aal~L~~Cas~~p~----~---~~yqLp~~~~~~~~a~~g~r~l~v~~V~ladyL-----~~~gi---Vyrtsd~q 69 (190)
T COG3009 5 LMIIAALLLAGCASGEPS----K---QYYQLPVAASAPVPASQGGRLLWVEPVRLADYL-----KRNGI---VYRTSDVQ 69 (190)
T ss_pred HHHHHHHHHHhcCCCCCC----c---eEEEccccccCCcccccccceEEEeeechhhhh-----cCCce---EEEcCChh
Confidence 677888999999994322 1 13344445555 58889987654432 222222 22222 78899999
Q ss_pred EEEEeCCCC
Q 020686 87 LICHHDVFL 95 (322)
Q Consensus 87 ~Vv~HD~~l 95 (322)
+++..+..-
T Consensus 70 ~~~a~nn~W 78 (190)
T COG3009 70 LVIANNNRW 78 (190)
T ss_pred eeehhhccc
Confidence 998887644
No 114
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=41.65 E-value=23 Score=26.34 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHhhcCCC
Q 020686 7 CFIPLLFLSLIAGCAAR 23 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~ 23 (322)
+..+++.++||+||++.
T Consensus 7 l~aviLs~~LLaGCAs~ 23 (85)
T PRK09973 7 VGAVVLATCLLSGCVNE 23 (85)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 33445556789999994
No 115
>PF12912 N_NLPC_P60: NLPC_P60 stabilising domain, N term; PDB: 3M1U_B.
Probab=40.82 E-value=9.1 Score=30.49 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCCC
Q 020686 8 FIPLLFLSLIAGCAARPLY 26 (322)
Q Consensus 8 ~~~~~~~~l~~~c~~~~~~ 26 (322)
++++++++|++||+...+.
T Consensus 2 ~~~~l~~lll~gCs~k~~~ 20 (124)
T PF12912_consen 2 IILLLALLLLAGCSSKTPP 20 (124)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHhCCCCCC
Confidence 5677888889999997664
No 116
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=40.55 E-value=50 Score=31.87 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhc---CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHH
Q 020686 158 TFEEYISIALDA---QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSL 234 (322)
Q Consensus 158 tL~e~l~~~~~~---~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l 234 (322)
.|+++++.+.+. +....+.+|.-. ..+-...++.++++|+.+. .+=+|||+.++|
T Consensus 80 ~l~~ll~~i~~~~~~~~~~eitiE~nP-------------~~~~~e~l~~l~~~GvnRi---------SiGvQS~~d~~L 137 (390)
T PRK06582 80 IVEGIINKISNLAIIDNQTEITLETNP-------------TSFETEKFKAFKLAGINRV---------SIGVQSLKEDDL 137 (390)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCC-------------CcCCHHHHHHHHHCCCCEE---------EEECCcCCHHHH
Confidence 346666666542 223456676632 2344677899999998642 356999999999
Q ss_pred HHHhhc
Q 020686 235 VYISNK 240 (322)
Q Consensus 235 ~~~~~~ 240 (322)
+.+.+.
T Consensus 138 ~~lgR~ 143 (390)
T PRK06582 138 KKLGRT 143 (390)
T ss_pred HHcCCC
Confidence 887764
No 117
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=40.35 E-value=25 Score=31.90 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=17.4
Q ss_pred ccchhHHHHHHHHHHhhcCCCCCC
Q 020686 3 ISSTCFIPLLFLSLIAGCAARPLY 26 (322)
Q Consensus 3 ~~~~~~~~~~~~~l~~~c~~~~~~ 26 (322)
+...++++++.+++++||+++...
T Consensus 5 ~~~~i~~lll~lllva~C~~s~~~ 28 (310)
T COG4594 5 KTAIILTLLLLLLLVAACSSSDNN 28 (310)
T ss_pred hhHHHHHHHHHHHHHHHhcCcCcc
Confidence 345566777777899999997543
No 118
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=39.60 E-value=43 Score=32.91 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=41.6
Q ss_pred ccCHHHHHHHHHhc-C--CcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChh
Q 020686 156 IITFEEYISIALDA-Q--RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPT 232 (322)
Q Consensus 156 iptL~e~l~~~~~~-~--~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~ 232 (322)
..-|+++++.+++. + ....+.+|+- +..+-+..++.++++|+... .+=+|||++.
T Consensus 119 ~~~l~~ll~~i~~~~~~~~~~e~tie~~-------------p~~lt~e~l~~L~~~G~~rv---------siGvQS~~~~ 176 (453)
T PRK13347 119 PDQFERLMAALRDAFDFAPEAEIAVEID-------------PRTVTAEMLQALAALGFNRA---------SFGVQDFDPQ 176 (453)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEEec-------------cccCCHHHHHHHHHcCCCEE---------EECCCCCCHH
Confidence 34467777777653 1 1234555542 23456788999999997642 3558999999
Q ss_pred HHHHHhhc
Q 020686 233 SLVYISNK 240 (322)
Q Consensus 233 ~l~~~~~~ 240 (322)
+++.+++.
T Consensus 177 vl~~l~R~ 184 (453)
T PRK13347 177 VQKAINRI 184 (453)
T ss_pred HHHHhCCC
Confidence 99888763
No 119
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=39.35 E-value=2.8e+02 Score=27.11 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=42.6
Q ss_pred ccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHH
Q 020686 156 IITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLV 235 (322)
Q Consensus 156 iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~ 235 (322)
=.++..+|+.+.... +|+... +.. |.++++-+.+++++......-.. -+.=.||-|.++|+
T Consensus 309 Gl~Fa~LLd~vs~~~------PemR~R-FTS-----PHPKDfpdevl~li~~rdnickq-------ihlPAqSgds~vLE 369 (552)
T KOG2492|consen 309 GLRFAHLLDQVSRAD------PEMRIR-FTS-----PHPKDFPDEVLELIRDRDNICKQ-------IHLPAQSGDSRVLE 369 (552)
T ss_pred CccHHHHHHHHhhhC------cceEEE-ecC-----CCCCCChHHHHHHHHhCcchhhe-------eeccccCCchHHHH
Confidence 356778888775433 444321 111 25678999999999886543210 14458999999999
Q ss_pred HHhhc
Q 020686 236 YISNK 240 (322)
Q Consensus 236 ~~~~~ 240 (322)
..++-
T Consensus 370 ~mrRg 374 (552)
T KOG2492|consen 370 IMRRG 374 (552)
T ss_pred HHHcc
Confidence 88864
No 120
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=38.92 E-value=57 Score=31.08 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=40.8
Q ss_pred cCHHHHHHHHHhc-C--CcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhH
Q 020686 157 ITFEEYISIALDA-Q--RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTS 233 (322)
Q Consensus 157 ptL~e~l~~~~~~-~--~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~ 233 (322)
..|+++++.+.+. + ....+.+|.- +..+.+..++.+++.|+... .+=+|||++++
T Consensus 76 ~~l~~ll~~i~~~~~~~~~~e~t~e~~-------------p~~i~~e~l~~l~~~G~~rv---------slGvQS~~~~~ 133 (375)
T PRK05628 76 EGLARVLDAVRDTFGLAPGAEVTTEAN-------------PESTSPEFFAALRAAGFTRV---------SLGMQSAAPHV 133 (375)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEeC-------------CCCCCHHHHHHHHHcCCCEE---------EEecccCCHHH
Confidence 4667777777642 1 1233445543 23456778899999998642 46699999999
Q ss_pred HHHHhh
Q 020686 234 LVYISN 239 (322)
Q Consensus 234 l~~~~~ 239 (322)
++.+.+
T Consensus 134 L~~l~R 139 (375)
T PRK05628 134 LAVLDR 139 (375)
T ss_pred HHHcCC
Confidence 988865
No 121
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=38.42 E-value=1e+02 Score=29.75 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.0
Q ss_pred CChHHHHHHHHcCCeEEEEeCCCC
Q 020686 299 TPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 299 ~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
.+.++++++.++|++..+.|||.|
T Consensus 152 ~~~~ll~RA~~aG~~alvlTVD~p 175 (383)
T cd03332 152 LTESLLRRAEKAGYRVLVVTLDTW 175 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCC
Confidence 366889999999999999999987
No 122
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=38.03 E-value=61 Score=30.90 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=41.1
Q ss_pred ccCHHHHHHHHHhc-C--CcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChh
Q 020686 156 IITFEEYISIALDA-Q--RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPT 232 (322)
Q Consensus 156 iptL~e~l~~~~~~-~--~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~ 232 (322)
...|+++++.+.+. + ....+.+|.- ...+.+..++.++++|.... .+=++||+++
T Consensus 67 ~~~l~~ll~~i~~~~~~~~~~eit~e~~-------------p~~l~~e~l~~l~~~G~~rv---------siGvqS~~~~ 124 (377)
T PRK08599 67 AEQLERLLTAIHRNLPLSGLEEFTFEAN-------------PGDLTKEKLQVLKDSGVNRI---------SLGVQTFNDE 124 (377)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEeC-------------CCCCCHHHHHHHHHcCCCEE---------EEecccCCHH
Confidence 34567777776653 1 1124555543 23455788999999997642 4669999999
Q ss_pred HHHHHhh
Q 020686 233 SLVYISN 239 (322)
Q Consensus 233 ~l~~~~~ 239 (322)
.++.+++
T Consensus 125 ~l~~l~r 131 (377)
T PRK08599 125 LLKKIGR 131 (377)
T ss_pred HHHHcCC
Confidence 9988876
No 123
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=37.54 E-value=2.1e+02 Score=26.43 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.6
Q ss_pred CCCChHHHHHHHHcCCeEE
Q 020686 297 SQTPTDLVARAHALDLQIH 315 (322)
Q Consensus 297 ~~~~~~~v~~ah~~Gl~V~ 315 (322)
..++.++|+.+|+.|..|=
T Consensus 115 i~~tkevv~~ah~~gvsVE 133 (286)
T COG0191 115 IAITKEVVEFAHAYGVSVE 133 (286)
T ss_pred HHHHHHHHHHHHHcCCcEE
Confidence 3468999999999998763
No 124
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=36.93 E-value=66 Score=30.47 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=39.6
Q ss_pred cCHHHHHHHHHhc---CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhH
Q 020686 157 ITFEEYISIALDA---QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTS 233 (322)
Q Consensus 157 ptL~e~l~~~~~~---~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~ 233 (322)
..|+++++.+.++ .....+.+|.-. ..+-+..++.++++|.... .+=+|||++++
T Consensus 68 ~~l~~ll~~i~~~~~~~~~~eitie~np-------------~~lt~e~l~~l~~~Gv~ri---------siGvqS~~~~~ 125 (360)
T TIGR00539 68 EAFERLFESIYQHASLSDDCEITTEANP-------------ELITAEWCKGLKGAGINRL---------SLGVQSFRDDK 125 (360)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEeCC-------------CCCCHHHHHHHHHcCCCEE---------EEecccCChHH
Confidence 3455566665432 123455666532 3345677899999997642 45699999999
Q ss_pred HHHHhh
Q 020686 234 LVYISN 239 (322)
Q Consensus 234 l~~~~~ 239 (322)
++.+.+
T Consensus 126 l~~lgR 131 (360)
T TIGR00539 126 LLFLGR 131 (360)
T ss_pred HHHhCC
Confidence 988854
No 125
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=36.92 E-value=65 Score=31.11 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=40.4
Q ss_pred cCHHHHHHHHHhcC---CcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhH
Q 020686 157 ITFEEYISIALDAQ---RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTS 233 (322)
Q Consensus 157 ptL~e~l~~~~~~~---~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~ 233 (322)
..|+++++.+.+.- ....+.+|.- +..+.+..++.++++|+... .+=+||||+.+
T Consensus 83 ~~l~~ll~~i~~~~~~~~~~eit~E~~-------------P~~lt~e~l~~l~~~Gvnri---------slGvQS~~d~~ 140 (400)
T PRK07379 83 EQLERILTTLDQRFGIAPDAEISLEID-------------PGTFDLEQLQGYRSLGVNRV---------SLGVQAFQDEL 140 (400)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEeC-------------CCcCCHHHHHHHHHCCCCEE---------EEEcccCCHHH
Confidence 45677777765421 1134455542 23355677899999998642 45699999999
Q ss_pred HHHHhhc
Q 020686 234 LVYISNK 240 (322)
Q Consensus 234 l~~~~~~ 240 (322)
|+.+.+.
T Consensus 141 L~~l~R~ 147 (400)
T PRK07379 141 LALCGRS 147 (400)
T ss_pred HHHhCCC
Confidence 9888763
No 126
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=36.61 E-value=24 Score=22.72 Aligned_cols=17 Identities=29% Similarity=0.424 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhcCCCCC
Q 020686 9 IPLLFLSLIAGCAARPL 25 (322)
Q Consensus 9 ~~~~~~~l~~~c~~~~~ 25 (322)
++.+.+++++||..+..
T Consensus 8 ~i~~~~~~L~aCQaN~i 24 (46)
T PF02402_consen 8 GIFLLTMLLAACQANYI 24 (46)
T ss_pred HHHHHHHHHHHhhhcce
Confidence 33344488999998643
No 127
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=36.34 E-value=31 Score=28.63 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhhcCC
Q 020686 7 CFIPLLFLSLIAGCAA 22 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~ 22 (322)
++++++++++|+||++
T Consensus 4 ~l~~~~l~l~LaGCAt 19 (151)
T PRK13883 4 IVLLALLALALGGCAT 19 (151)
T ss_pred HHHHHHHHHHHhcccC
Confidence 4556666778899996
No 128
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=36.30 E-value=66 Score=30.13 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=34.8
Q ss_pred eeCCCCC----CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEE
Q 020686 48 AHRGSNG----EFPEETAAAYMRAIEEGADFIETDILASKDGVLICH 90 (322)
Q Consensus 48 aHRG~~~----~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~ 90 (322)
-|||+.+ .-+|=-.-|.+.|-.+|..++=+||-.++||..|+=
T Consensus 238 ~a~Gg~~e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~E 284 (318)
T COG0189 238 LARGGRAEPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTE 284 (318)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEE
Confidence 4677754 455666778888888999999999999999998863
No 129
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=36.07 E-value=12 Score=29.38 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=1.1
Q ss_pred chhHHHHHHHHHHhhcC
Q 020686 5 STCFIPLLFLSLIAGCA 21 (322)
Q Consensus 5 ~~~~~~~~~~~l~~~c~ 21 (322)
.++|+++++++|+.||=
T Consensus 29 IGiL~VILgiLLliGCW 45 (118)
T PF14991_consen 29 IGILIVILGILLLIGCW 45 (118)
T ss_dssp SS---------------
T ss_pred ceeHHHHHHHHHHHhhe
Confidence 46788888888888874
No 130
>TIGR02722 lp_ uncharacterized proteobacterial lipoprotein. Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby.
Probab=35.81 E-value=36 Score=29.30 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHhhcCCC
Q 020686 7 CFIPLLFLSLIAGCAAR 23 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~ 23 (322)
++++++++++++||++.
T Consensus 5 ~~~~~~~al~l~gC~~~ 21 (189)
T TIGR02722 5 IIFVALLALLLSGCVSQ 21 (189)
T ss_pred HHHHHHHHHHHccCCCC
Confidence 45667778899999885
No 131
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=35.72 E-value=41 Score=31.37 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=23.8
Q ss_pred CCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686 297 SQTPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 297 ~~~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
..++..+|+++.++|++..+=||++|
T Consensus 133 r~It~~Lv~raEk~GfkAlvlTvDtP 158 (363)
T KOG0538|consen 133 RDITEQLVKRAEKAGFKALVLTVDTP 158 (363)
T ss_pred hHHHHHHHHHHHHcCceEEEEEeccc
Confidence 45688999999999999999999998
No 132
>COG5645 Predicted periplasmic lipoprotein [General function prediction only]
Probab=35.72 E-value=22 Score=25.86 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=8.6
Q ss_pred HHHHHhhcCCC
Q 020686 13 FLSLIAGCAAR 23 (322)
Q Consensus 13 ~~~l~~~c~~~ 23 (322)
+.++++||++-
T Consensus 10 v~lllSGC~SV 20 (80)
T COG5645 10 VLLLLSGCGSV 20 (80)
T ss_pred HHHHhCcccee
Confidence 33789999994
No 133
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=35.63 E-value=64 Score=26.20 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhhcCCCCC
Q 020686 7 CFIPLLFLSLIAGCAARPL 25 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~~~ 25 (322)
.|.+++++++|+||+....
T Consensus 3 ~l~~~LL~L~LsGCS~l~~ 21 (133)
T PRK10781 3 ALPICLLALMLTGCSMLSR 21 (133)
T ss_pred hHHHHHHHHHHhhccccCc
Confidence 4677788899999997544
No 134
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=35.34 E-value=39 Score=27.80 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHhhcCCCC
Q 020686 6 TCFIPLLFLSLIAGCAARP 24 (322)
Q Consensus 6 ~~~~~~~~~~l~~~c~~~~ 24 (322)
-++++++++++++||.+..
T Consensus 3 k~~~~~~~al~LaGCaT~~ 21 (145)
T PRK13835 3 RLLAACILALLLSGCQTLA 21 (145)
T ss_pred hHHHHHHHHHHHhcccccC
Confidence 3566777788999999953
No 135
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=35.05 E-value=62 Score=31.84 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=39.1
Q ss_pred CHHHHHHHHHhc---CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHH
Q 020686 158 TFEEYISIALDA---QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSL 234 (322)
Q Consensus 158 tL~e~l~~~~~~---~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l 234 (322)
.|+++++.+++. .....+.+|.-. ..+-+..++++++.|..+. .+=|||||..++
T Consensus 132 ~l~~ll~~i~~~~~l~~~~eitiE~~p-------------~~~t~e~l~~l~~aGvnRi---------SiGVQSf~d~vL 189 (449)
T PRK09058 132 DLARLITALREYLPLAPDCEITLEGRI-------------NGFDDEKADAALDAGANRF---------SIGVQSFNTQVR 189 (449)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCc-------------CcCCHHHHHHHHHcCCCEE---------EecCCcCCHHHH
Confidence 456666666542 122345555432 2345677899999998642 345999999999
Q ss_pred HHHhh
Q 020686 235 VYISN 239 (322)
Q Consensus 235 ~~~~~ 239 (322)
+.+.+
T Consensus 190 k~lgR 194 (449)
T PRK09058 190 RRAGR 194 (449)
T ss_pred HHhCC
Confidence 98865
No 136
>PRK10175 lipoprotein; Provisional
Probab=34.91 E-value=24 Score=25.58 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHhhcCCCCC
Q 020686 7 CFIPLLFLSLIAGCAARPL 25 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~~~ 25 (322)
++++.+.+++++||++.-.
T Consensus 3 ~~~~~~~~~~lsGCgSi~s 21 (75)
T PRK10175 3 LIVVSIMVTLLSGCGSIIS 21 (75)
T ss_pred eHHHHHHHHHhccchhhhh
Confidence 4566677789999999443
No 137
>TIGR00548 lolB outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM.
Probab=34.84 E-value=32 Score=29.89 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHhhcCCCC
Q 020686 7 CFIPLLFLSLIAGCAARP 24 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~~ 24 (322)
++++++++++|+||++..
T Consensus 4 ~~~~l~~~llLsgCa~~~ 21 (202)
T TIGR00548 4 LFLALSALALLTACAGLT 21 (202)
T ss_pred eHHHHHHHHHHhhccCCC
Confidence 344445667889998643
No 138
>PF06474 MLTD_N: MltD lipid attachment motif; InterPro: IPR010511 This entry represents the MltD lipid attachment domain. It is a short N-terminal domain found in membrane-bound lytic murein transglycosylase D (Mltd).
Probab=34.70 E-value=34 Score=20.78 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhcCC
Q 020686 9 IPLLFLSLIAGCAA 22 (322)
Q Consensus 9 ~~~~~~~l~~~c~~ 22 (322)
..+.+..+++||.+
T Consensus 21 ~~l~l~a~l~GCQS 34 (34)
T PF06474_consen 21 SVLALGALLVGCQS 34 (34)
T ss_pred HHHHHHHHHccccC
Confidence 34445578899975
No 139
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=34.39 E-value=64 Score=31.70 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=40.7
Q ss_pred ccCHHHHHHHHHhc---CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChh
Q 020686 156 IITFEEYISIALDA---QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPT 232 (322)
Q Consensus 156 iptL~e~l~~~~~~---~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~ 232 (322)
...+.++++.+++. .....+.+|.- +..+.+..++.++++|+... .+=++||+++
T Consensus 118 ~~~l~~ll~~i~~~~~~~~~~eitie~n-------------p~~l~~e~l~~lk~~G~~ri---------siGvqS~~~~ 175 (455)
T TIGR00538 118 PEQISRLMKLIRENFPFNADAEISIEID-------------PRYITKDVIDALRDEGFNRL---------SFGVQDFNKE 175 (455)
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEec-------------cCcCCHHHHHHHHHcCCCEE---------EEcCCCCCHH
Confidence 45567777776642 11234555542 23455788999999997642 3458999999
Q ss_pred HHHHHhh
Q 020686 233 SLVYISN 239 (322)
Q Consensus 233 ~l~~~~~ 239 (322)
+++.+++
T Consensus 176 ~l~~l~r 182 (455)
T TIGR00538 176 VQQAVNR 182 (455)
T ss_pred HHHHhCC
Confidence 9988876
No 140
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=34.30 E-value=39 Score=27.83 Aligned_cols=15 Identities=33% Similarity=0.591 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhcCCC
Q 020686 9 IPLLFLSLIAGCAAR 23 (322)
Q Consensus 9 ~~~~~~~l~~~c~~~ 23 (322)
+++.++++++||++.
T Consensus 5 ~~l~~~llL~gC~s~ 19 (146)
T TIGR03352 5 VLLAACLLLAGCSSA 19 (146)
T ss_pred HHHHHHHHHhhccCC
Confidence 344455689999974
No 141
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=34.29 E-value=1.4e+02 Score=28.73 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.2
Q ss_pred CChHHHHHHHHcCCeEEEEeCCCC
Q 020686 299 TPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 299 ~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++.+++++++++|++..+-|||.|
T Consensus 147 ~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 147 INRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCC
Confidence 367899999999999999999976
No 142
>cd08588 PI-PLCc_At5g67130_like Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. This subfamily corresponds to the catalytic domain present in Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. Members in this family show high sequence similarity to bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participates in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG).
Probab=34.22 E-value=38 Score=30.96 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=29.6
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeC
Q 020686 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHD 92 (322)
Q Consensus 56 ~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD 92 (322)
...|--.++...++.|++++|+||+.. ++.+.++|.
T Consensus 33 ~~~nQ~~si~~QL~~GiR~l~ld~~~~-~~~~~lcH~ 68 (270)
T cd08588 33 LAPNQEDDITKQLDDGVRGLMLDIHDA-NGGLRLCHS 68 (270)
T ss_pred cccccCCCHHHHHHhCcceEeeeEEec-CCCEEEECC
Confidence 445666788999999999999999996 666778885
No 143
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=34.08 E-value=63 Score=31.76 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=41.1
Q ss_pred ccCHHHHHHHHHhcC---CcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChh
Q 020686 156 IITFEEYISIALDAQ---RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPT 232 (322)
Q Consensus 156 iptL~e~l~~~~~~~---~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~ 232 (322)
...|+++++.+.+.- ....+.+|.- +..+.+..+++++++|+... .+=++||+.+
T Consensus 118 ~~~l~~ll~~l~~~~~~~~~~e~tie~n-------------p~~lt~e~l~~l~~aG~~ri---------siGvqS~~~~ 175 (453)
T PRK09249 118 PEQLRRLMALLREHFNFAPDAEISIEID-------------PRELDLEMLDALRELGFNRL---------SLGVQDFDPE 175 (453)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEec-------------CCcCCHHHHHHHHHcCCCEE---------EECCCCCCHH
Confidence 345677777765431 1234555542 23456788999999998642 3558999999
Q ss_pred HHHHHhhc
Q 020686 233 SLVYISNK 240 (322)
Q Consensus 233 ~l~~~~~~ 240 (322)
+++.+++.
T Consensus 176 ~L~~l~r~ 183 (453)
T PRK09249 176 VQKAVNRI 183 (453)
T ss_pred HHHHhCCC
Confidence 99887764
No 144
>PLN02979 glycolate oxidase
Probab=33.74 E-value=1.4e+02 Score=28.58 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.9
Q ss_pred CChHHHHHHHHcCCeEEEEeCCCC
Q 020686 299 TPTDLVARAHALDLQIHIGNTTTG 322 (322)
Q Consensus 299 ~~~~~v~~ah~~Gl~V~vWTvn~~ 322 (322)
++.+++++++++|++..+-|||.|
T Consensus 135 ~~~~ll~RA~~aG~~AlvlTVD~p 158 (366)
T PLN02979 135 VVEQLVRRAERAGFKAIALTVDTP 158 (366)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCC
Confidence 366889999999999999999986
No 145
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.39 E-value=29 Score=33.79 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=16.4
Q ss_pred hHHHHHHHHcCCeEEEEe
Q 020686 301 TDLVARAHALDLQIHIGN 318 (322)
Q Consensus 301 ~~~v~~ah~~Gl~V~vWT 318 (322)
..+|.++|++||.||+|-
T Consensus 118 a~~I~~AHkr~l~v~aWf 135 (418)
T COG1649 118 AFVIAEAHKRGLEVHAWF 135 (418)
T ss_pred HHHHHHHHhcCCeeeech
Confidence 578999999999999994
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=33.36 E-value=42 Score=30.02 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=14.0
Q ss_pred CCccchhHHHHHHHHHHhhcCC
Q 020686 1 MGISSTCFIPLLFLSLIAGCAA 22 (322)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~c~~ 22 (322)
|....-++++++++++++||++
T Consensus 1 ~~~~~~~~~~~~~~~~lsgCs~ 22 (243)
T PRK10866 1 MTRMKYLVAAATLSLFLAGCSG 22 (243)
T ss_pred CchHHHHHHHHHHHHHHhhcCC
Confidence 3334444555556788999975
No 147
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=33.33 E-value=24 Score=30.27 Aligned_cols=13 Identities=23% Similarity=0.260 Sum_probs=10.3
Q ss_pred HHHHHHHHhhcCC
Q 020686 10 PLLFLSLIAGCAA 22 (322)
Q Consensus 10 ~~~~~~l~~~c~~ 22 (322)
+++++++|+||++
T Consensus 8 l~~~~l~LsgCas 20 (182)
T TIGR00752 8 FTALCFGLTGCIA 20 (182)
T ss_pred HHHHHHHHhcccC
Confidence 4556788999998
No 148
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=32.89 E-value=1.4e+02 Score=28.51 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=12.8
Q ss_pred chhHHHHHHHHHHhhcCCCC
Q 020686 5 STCFIPLLFLSLIAGCAARP 24 (322)
Q Consensus 5 ~~~~~~~~~~~l~~~c~~~~ 24 (322)
..++++.+++++|+||++..
T Consensus 5 ~~~~~~~~~~~~l~gCg~~~ 24 (437)
T TIGR03850 5 ALALALAMAASSLAGCGSGT 24 (437)
T ss_pred HHHHHHHHHHHHHhhccCCC
Confidence 34445555556789998754
No 149
>PRK05660 HemN family oxidoreductase; Provisional
Probab=32.66 E-value=79 Score=30.27 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=39.2
Q ss_pred HHHHHHHHHhc-C--CcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHH
Q 020686 159 FEEYISIALDA-Q--RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLV 235 (322)
Q Consensus 159 L~e~l~~~~~~-~--~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~ 235 (322)
|+++++.++++ + ....+.+|.- +..+....++.++++|+.+. .+=+|||++++++
T Consensus 77 l~~ll~~l~~~~~~~~~~eit~e~n-------------p~~l~~e~l~~Lk~~Gv~ri---------siGvqS~~~~~L~ 134 (378)
T PRK05660 77 IQRLLDGVRARLPFAPDAEITMEAN-------------PGTVEADRFVGYQRAGVNRI---------SIGVQSFSEEKLK 134 (378)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEeC-------------cCcCCHHHHHHHHHcCCCEE---------EeccCcCCHHHHH
Confidence 56666666542 1 2245666653 23455677999999998642 4569999999998
Q ss_pred HHhh
Q 020686 236 YISN 239 (322)
Q Consensus 236 ~~~~ 239 (322)
.+.+
T Consensus 135 ~l~r 138 (378)
T PRK05660 135 RLGR 138 (378)
T ss_pred HhCC
Confidence 8765
No 150
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=32.59 E-value=41 Score=28.84 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.9
Q ss_pred CCchhHHHHHHHHHHcCCCEEEee
Q 020686 55 EFPEETAAAYMRAIEEGADFIETD 78 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~D 78 (322)
.-++++....+.+.+.|+|.||+|
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~ 31 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVD 31 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc
Confidence 346899999999999999999998
No 151
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=32.53 E-value=28 Score=22.95 Aligned_cols=16 Identities=19% Similarity=0.563 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHhhcCC
Q 020686 7 CFIPLLFLSLIAGCAA 22 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~ 22 (322)
++.+++.+++++||+.
T Consensus 9 i~~~l~~~~~l~~CnT 24 (48)
T PRK10081 9 IFSVLVLSTVLTACNT 24 (48)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3455556677999976
No 152
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=32.36 E-value=2.9e+02 Score=25.49 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=14.3
Q ss_pred CCChHHHHHHHHcCCeE
Q 020686 298 QTPTDLVARAHALDLQI 314 (322)
Q Consensus 298 ~~~~~~v~~ah~~Gl~V 314 (322)
..+.++++.+|+.|+.|
T Consensus 115 ~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 115 AFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 45889999999999876
No 153
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.33 E-value=37 Score=28.42 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHHhhcCCCCC
Q 020686 5 STCFIPLLFLSLIAGCAARPL 25 (322)
Q Consensus 5 ~~~~~~~~~~~l~~~c~~~~~ 25 (322)
...+.+++++++++||+++.+
T Consensus 5 ~~a~~~l~al~~~sgCsss~~ 25 (159)
T COG3521 5 RKAVLALFALLVLSGCSSSKP 25 (159)
T ss_pred HHHHHHHHHHHHhhhhccCCC
Confidence 445566666677789966443
No 154
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=32.09 E-value=3.5e+02 Score=23.65 Aligned_cols=26 Identities=8% Similarity=-0.100 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686 296 YSQTPTDLVARAHALDLQIHIGNTTT 321 (322)
Q Consensus 296 ~~~~~~~~v~~ah~~Gl~V~vWTvn~ 321 (322)
+-..++..++.+++.|+++..|+++.
T Consensus 137 ~G~~~~~~~~~l~~~Gy~~v~w~v~~ 162 (224)
T TIGR02884 137 RGVFSERTLAYTKELGYYTVFWSLAF 162 (224)
T ss_pred CCCcCHHHHHHHHHcCCcEEeccccC
Confidence 34457889999999999999999873
No 155
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=32.05 E-value=3.8e+02 Score=24.08 Aligned_cols=138 Identities=19% Similarity=0.188 Sum_probs=76.1
Q ss_pred CCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccceeecc
Q 020686 50 RGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDF 129 (322)
Q Consensus 50 RG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~ 129 (322)
|.+++..-.+=+.+-..|.+.|||+|=+ ++-.|-- -|.+-
T Consensus 16 RnaR~~~~Pd~v~aA~~a~~aGAdgITv--HlReDrR--------------------------------------HI~d~ 55 (239)
T PRK05265 16 RNARGTNYPDPVRAALIAEQAGADGITV--HLREDRR--------------------------------------HIRDR 55 (239)
T ss_pred cccCCCCCCCHHHHHHHHHHcCCCEEEe--cCCCCcc--------------------------------------cCCHH
Confidence 4555444445566777888999998753 3333321 35555
Q ss_pred CHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhc-CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHc
Q 020686 130 TLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDA-QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKY 208 (322)
Q Consensus 130 t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~-~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 208 (322)
....|+++... .++ .-...-+|+++++.+. +..+.+.+|-+..-..+-..+........+.+++.|++.
T Consensus 56 Dv~~L~~~~~~-~lN---------lE~a~~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~ 125 (239)
T PRK05265 56 DVRLLRETLKT-ELN---------LEMAATEEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDA 125 (239)
T ss_pred HHHHHHHhcCC-CEE---------eccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHC
Confidence 55555554321 111 1233447898887765 456777777665332222222222345677788888888
Q ss_pred CCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEE
Q 020686 209 GYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLI 249 (322)
Q Consensus 209 ~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~ 249 (322)
|+.- .+|.=-+++.++.-++. ....+=|.
T Consensus 126 gIrV-----------SLFidP~~~qi~~A~~~-GAd~VELh 154 (239)
T PRK05265 126 GIRV-----------SLFIDPDPEQIEAAAEV-GADRIELH 154 (239)
T ss_pred CCEE-----------EEEeCCCHHHHHHHHHh-CcCEEEEe
Confidence 8632 35555666677666665 23444443
No 156
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=31.64 E-value=48 Score=27.70 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhcCCCCCC
Q 020686 8 FIPLLFLSLIAGCAARPLY 26 (322)
Q Consensus 8 ~~~~~~~~l~~~c~~~~~~ 26 (322)
++++++.++|+||++....
T Consensus 2 ~~~l~~~~llagCss~~~~ 20 (158)
T PF13798_consen 2 IPLLSLSLLLAGCSSDEDS 20 (158)
T ss_pred hHHHHHHHHHHHcCCCCcc
Confidence 5667778999999996554
No 157
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=31.54 E-value=48 Score=26.77 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=16.4
Q ss_pred hHHHHHHHHcCCeEEEEe
Q 020686 301 TDLVARAHALDLQIHIGN 318 (322)
Q Consensus 301 ~~~v~~ah~~Gl~V~vWT 318 (322)
.++|+.+|++|++|.++.
T Consensus 47 ge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHHHHCCCEEEEEE
Confidence 689999999999999875
No 158
>TIGR02747 TraV type IV conjugative transfer system lipoprotein TraV. The TraV protein is a component of conjugative type IV secretion systems. TraV is an outer membrane lipoprotein and is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.
Probab=31.47 E-value=31 Score=28.40 Aligned_cols=17 Identities=18% Similarity=0.632 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHhhcCC
Q 020686 6 TCFIPLLFLSLIAGCAA 22 (322)
Q Consensus 6 ~~~~~~~~~~l~~~c~~ 22 (322)
.+|+++.+++||+||++
T Consensus 4 ~~l~~~~~~alLtGCsa 20 (144)
T TIGR02747 4 RFLLLIACVAFLTGCSA 20 (144)
T ss_pred eehhHHHHHHHhhcccC
Confidence 34555545545999977
No 159
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=31.41 E-value=34 Score=28.64 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcC
Q 020686 195 KKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKT 241 (322)
Q Consensus 195 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~ 241 (322)
.++...+.+.+++..-. -+-++-|-|++...++++..
T Consensus 97 ~~iK~~Va~~Vk~~dp~----------~~~VyVsaDpd~~~Ri~~~~ 133 (158)
T TIGR02898 97 DELKEKVAETVKSTDNR----------IANVYVSADPDTVERIRRYG 133 (158)
T ss_pred HHHHHHHHHHHHhhCCC----------cceEEEEcCHHHHHHHHHHH
Confidence 45666777777772211 13344567889999998864
No 160
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=31.32 E-value=61 Score=31.67 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=31.1
Q ss_pred CCCCCeEE--eeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCC
Q 020686 40 QTSRPYNL--AHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDV 93 (322)
Q Consensus 40 ~~~~p~ii--aHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~ 93 (322)
..++|+|+ |.|-. +.++|.|=..|+..|.. .. -|+.||||+.
T Consensus 177 ~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~~A~~-~~-----------~gV~Vvf~g~ 223 (419)
T PRK04183 177 KTPVPIVFVGAQRSSDRPSSDAAMNLICAVLAATS-DI-----------AEVVVVMHGT 223 (419)
T ss_pred CCCCCEEEeCCCCCCCCCCchHHHHHHHHHHHHhC-CC-----------CcEEEEECCc
Confidence 34566665 66655 56899999999998873 11 1899999996
No 161
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=31.21 E-value=38 Score=26.53 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=13.6
Q ss_pred chhHHHHHHHHHHhhcCC
Q 020686 5 STCFIPLLFLSLIAGCAA 22 (322)
Q Consensus 5 ~~~~~~~~~~~l~~~c~~ 22 (322)
..++++++++++++||++
T Consensus 3 ~~~~~~~~~~l~lagCS~ 20 (109)
T PRK11251 3 AGILSAAAVLTMLAGCTA 20 (109)
T ss_pred hHHHHHHHHHHHHhhCcc
Confidence 346667777788999976
No 162
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=30.69 E-value=43 Score=29.20 Aligned_cols=22 Identities=14% Similarity=0.171 Sum_probs=16.5
Q ss_pred ccchhHHHHHHHHHHhhcCCCC
Q 020686 3 ISSTCFIPLLFLSLIAGCAARP 24 (322)
Q Consensus 3 ~~~~~~~~~~~~~l~~~c~~~~ 24 (322)
.....+++.++++||+||....
T Consensus 5 ~~~~~~l~~~As~LL~aC~~~~ 26 (206)
T COG3017 5 KRLLFLLLALASLLLTACTLTA 26 (206)
T ss_pred HHHHHHHHHHHHHHHHhccCcC
Confidence 3456778888889999996543
No 163
>PRK13792 lysozyme inhibitor; Provisional
Probab=30.32 E-value=39 Score=27.23 Aligned_cols=21 Identities=5% Similarity=0.075 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHhhcCCCCCC
Q 020686 6 TCFIPLLFLSLIAGCAARPLY 26 (322)
Q Consensus 6 ~~~~~~~~~~l~~~c~~~~~~ 26 (322)
.+++++.++++|+||++....
T Consensus 5 l~~ll~~~~~lLsaCs~~~~~ 25 (127)
T PRK13792 5 LWLLLAAVPVVLVACGGSDDD 25 (127)
T ss_pred HHHHHHHHHhheecccCCCCC
Confidence 456666667889999997553
No 164
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=30.28 E-value=55 Score=30.80 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=15.5
Q ss_pred chhHHHHHHHHHHhhcCCCCC
Q 020686 5 STCFIPLLFLSLIAGCAARPL 25 (322)
Q Consensus 5 ~~~~~~~~~~~l~~~c~~~~~ 25 (322)
...++..++.+++|||++.+.
T Consensus 5 ~~~v~~al~v~~LaaCSs~~~ 25 (342)
T COG3317 5 AKLVLGALLVLLLAACSSDSE 25 (342)
T ss_pred HHHHHHHHHHHHHhhccCCcc
Confidence 345667777789999997544
No 165
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=29.74 E-value=37 Score=26.00 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCcccCcCCCCCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCC-EEEeeeeEc
Q 020686 8 FIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGAD-FIETDILAS 82 (322)
Q Consensus 8 ~~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d-~iE~DV~lT 82 (322)
++...++++++||++..-...+.+.. ........++..+ +|..+++.+.+-+-+- |++ +.-+..|.|
T Consensus 5 ll~~~lallLtgCatqt~~~~~~~~~-~~~~~~~~~~ffi-----~Gl~q~~~vdaa~vCg--g~~~v~kvetq~T 72 (97)
T PF06291_consen 5 LLAAALALLLTGCATQTFTVGNQPTA-VTPKKTVSHHFFI-----SGLGQSKEVDAAQVCG--GAEKVAKVETQQT 72 (97)
T ss_pred HHHHHHHHHHcccceeEEEeCCCCcc-cccceeeecceEE-----EecCCcccccHHHhcC--CCccEEEEEEeee
Confidence 33445567899999875543322110 0001111233333 4667777776644443 233 334555554
No 166
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=29.46 E-value=55 Score=27.27 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=17.7
Q ss_pred ccchhHHHHHHHHHHhhcCCCCC
Q 020686 3 ISSTCFIPLLFLSLIAGCAARPL 25 (322)
Q Consensus 3 ~~~~~~~~~~~~~l~~~c~~~~~ 25 (322)
|..++|..+.+++|++||....-
T Consensus 1 mkr~Lla~la~~~llAgC~~~ed 23 (176)
T COG4314 1 MKRTLLAILAVTALLAGCRQAED 23 (176)
T ss_pred CchhHHHHHHHHHHHHhcchhhc
Confidence 35677788888899999998443
No 167
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=29.25 E-value=91 Score=30.56 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=36.7
Q ss_pred cCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHH
Q 020686 157 ITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVY 236 (322)
Q Consensus 157 ptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~ 236 (322)
..|+++++.+++.-....+.+|.-. ..+.+..++.+++. ..+. .+=|||||+.+|+.
T Consensus 117 ~~L~~ll~~i~~~f~i~eis~E~~P-------------~~lt~e~L~~l~~~-vnrl---------siGVQS~~d~vLk~ 173 (433)
T PRK08629 117 DELAKTLELAKKLFSIKEVSCESDP-------------NHLDPPKLKQLKGL-IDRL---------SIGVQSFNDDILKM 173 (433)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCc-------------ccCCHHHHHHHHHh-CCeE---------EEecCcCCHHHHHH
Confidence 3456667666543221245555532 23445667788876 5431 46699999999988
Q ss_pred Hhh
Q 020686 237 ISN 239 (322)
Q Consensus 237 ~~~ 239 (322)
+.+
T Consensus 174 ~gR 176 (433)
T PRK08629 174 VDR 176 (433)
T ss_pred cCC
Confidence 754
No 168
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=28.86 E-value=60 Score=23.30 Aligned_cols=21 Identities=14% Similarity=0.030 Sum_probs=16.0
Q ss_pred CCChHHHHHHHHcCCeEEEEe
Q 020686 298 QTPTDLVARAHALDLQIHIGN 318 (322)
Q Consensus 298 ~~~~~~v~~ah~~Gl~V~vWT 318 (322)
..+++.|+.+|+.|..|++|-
T Consensus 36 ~~~~~~I~~L~~~G~~vicY~ 56 (74)
T PF03537_consen 36 DFSKEEIARLKAQGKKVICYF 56 (74)
T ss_dssp S--HHHHHHHHHTT-EEEEEE
T ss_pred cCCHHHHHHHHHCCCEEEEEE
Confidence 358899999999999999873
No 169
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.40 E-value=4.1e+02 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=14.3
Q ss_pred CCCChHHHHHHHHcCCeE
Q 020686 297 SQTPTDLVARAHALDLQI 314 (322)
Q Consensus 297 ~~~~~~~v~~ah~~Gl~V 314 (322)
...+.++++.+|+.|..|
T Consensus 114 i~~T~~vv~~Ah~~gv~V 131 (284)
T PRK09195 114 ISLVKEVVDFCHRFDVSV 131 (284)
T ss_pred HHHHHHHHHHHHHcCCEE
Confidence 345888999999988766
No 170
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=28.20 E-value=1.1e+02 Score=29.87 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCC----cceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHH
Q 020686 159 FEEYISIALDAQR----VVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSL 234 (322)
Q Consensus 159 L~e~l~~~~~~~~----~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l 234 (322)
|+++++.+.+.-. ...+.+|.- +..+.+..++.+++.|+... .+=+|||+...+
T Consensus 110 l~~Ll~~i~~~~~~~~~~~eitiE~~-------------P~~lt~e~l~~l~~~G~~rv---------slGvQS~~~~~L 167 (430)
T PRK08208 110 LEKLFDSVERVLGVDLGNIPKSVETS-------------PATTTAEKLALLAARGVNRL---------SIGVQSFHDSEL 167 (430)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEeC-------------cCcCCHHHHHHHHHcCCCEE---------EEecccCCHHHH
Confidence 4788887764321 123455543 23456788999999988642 466999999888
Q ss_pred HHHhh
Q 020686 235 VYISN 239 (322)
Q Consensus 235 ~~~~~ 239 (322)
+.+.+
T Consensus 168 ~~l~R 172 (430)
T PRK08208 168 HALHR 172 (430)
T ss_pred HHhCC
Confidence 77765
No 171
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=28.16 E-value=38 Score=28.65 Aligned_cols=17 Identities=47% Similarity=0.788 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHhhcCCC
Q 020686 7 CFIPLLFLSLIAGCAAR 23 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~ 23 (322)
+++++..++||+||+..
T Consensus 6 ~li~l~~~LlL~GCAg~ 22 (171)
T PRK13733 6 LLIPLLGTLLLSGCAGT 22 (171)
T ss_pred HHHHHHHHHHhccccCC
Confidence 44555666889999983
No 172
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=27.68 E-value=61 Score=31.50 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCCeEE--eeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCC
Q 020686 42 SRPYNL--AHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDV 93 (322)
Q Consensus 42 ~~p~ii--aHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~ 93 (322)
++|+|+ |.|-. +.++|.|=..|+..|.. .. -|+.||||+.
T Consensus 167 ~kPVVlTGAqrp~~~~~sDa~~NL~~Av~~A~~-~~-----------~gV~V~f~g~ 211 (404)
T TIGR02153 167 PVPVVLVGAQRSSDRPSSDAALNLICAVRAATS-PI-----------AEVTVVMHGE 211 (404)
T ss_pred CCCEEEECCCCCCCCCCchHHHHHHHHHHHHhC-CC-----------CcEEEEECCc
Confidence 567766 67765 46899999999998864 21 1899999996
No 173
>PHA00407 phage lambda Rz1-like protein
Probab=27.67 E-value=66 Score=23.35 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhhcCCCCCC
Q 020686 7 CFIPLLFLSLIAGCAARPLY 26 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~~~~ 26 (322)
+-.++++.+.++||++.+-.
T Consensus 36 IGlllicv~tISGCaSes~l 55 (84)
T PHA00407 36 IGLLLICVATISGCASESNL 55 (84)
T ss_pred HHHHHHHHHHHhhhhhcccC
Confidence 34456666889999996543
No 174
>PRK11616 hypothetical protein; Provisional
Probab=26.90 E-value=42 Score=26.18 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhhcCC
Q 020686 7 CFIPLLFLSLIAGCAA 22 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~ 22 (322)
.+++...+++++||++
T Consensus 7 ~~~~~~~~llLsGCgS 22 (109)
T PRK11616 7 AFMICSGMLLLSGCSS 22 (109)
T ss_pred HHHHHHHHHHhcccHh
Confidence 3445666799999999
No 175
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=26.89 E-value=1.2e+02 Score=29.08 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=38.8
Q ss_pred CHHHHHHHHHhc-C--CcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHH
Q 020686 158 TFEEYISIALDA-Q--RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSL 234 (322)
Q Consensus 158 tL~e~l~~~~~~-~--~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l 234 (322)
.|+++++.++++ + ....+.+|.-. ..+....++.++++|+... -+=+||||+++|
T Consensus 91 ~L~~ll~~i~~~~~~~~~~eit~E~~p-------------~~~~~e~L~~l~~~Gvnri---------siGvQS~~~~~L 148 (394)
T PRK08898 91 GLDRLLSDVRALLPLDPDAEITLEANP-------------GTFEAEKFAQFRASGVNRL---------SIGIQSFNDAHL 148 (394)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEECC-------------CCCCHHHHHHHHHcCCCeE---------EEecccCCHHHH
Confidence 346666666543 1 12356666632 2334566899999998742 356999999999
Q ss_pred HHHhh
Q 020686 235 VYISN 239 (322)
Q Consensus 235 ~~~~~ 239 (322)
+.+.+
T Consensus 149 ~~l~R 153 (394)
T PRK08898 149 KALGR 153 (394)
T ss_pred HHhCC
Confidence 87755
No 176
>PRK10449 heat-inducible protein; Provisional
Probab=26.57 E-value=65 Score=26.20 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHhhcCCCC
Q 020686 7 CFIPLLFLSLIAGCAARP 24 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~~ 24 (322)
++++++++++++||++..
T Consensus 4 ~~~~~~~~~~l~~C~~~~ 21 (140)
T PRK10449 4 VVALVALSLLMAGCVSSG 21 (140)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 456677778889999944
No 177
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=26.32 E-value=4.1e+02 Score=24.82 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHHcCCeE
Q 020686 297 SQTPTDLVARAHALDLQI 314 (322)
Q Consensus 297 ~~~~~~~v~~ah~~Gl~V 314 (322)
...+.++++.+|+.|..|
T Consensus 114 i~~T~~vve~Ah~~gv~V 131 (307)
T PRK05835 114 LELTSKVVKMAHNAGVSV 131 (307)
T ss_pred HHHHHHHHHHHHHcCCEE
Confidence 345789999999998876
No 178
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=26.23 E-value=69 Score=25.73 Aligned_cols=23 Identities=17% Similarity=0.233 Sum_probs=17.8
Q ss_pred cchhHHHHHHHHHHhhcCCCCCC
Q 020686 4 SSTCFIPLLFLSLIAGCAARPLY 26 (322)
Q Consensus 4 ~~~~~~~~~~~~l~~~c~~~~~~ 26 (322)
..++..+++.++||.+|+.+.-.
T Consensus 3 k~g~~~~~~~~~LL~aCg~sd~s 25 (147)
T COG4939 3 KYGLVGMIVALSLLTACGKSDFS 25 (147)
T ss_pred eehhhHHHHHHHHHHHhcccccc
Confidence 35667788888999999997543
No 179
>PF12957 DUF3846: Domain of unknown function (DUF3846); InterPro: IPR024559 A family of uncharacterised proteins found by clustering human gut metagenomic sequences []. In a few cases it is found fused to the C terminus of ArdA (Pfam:PF07275). ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification [].
Probab=26.10 E-value=1.2e+02 Score=22.73 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCC
Q 020686 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVF 94 (322)
Q Consensus 55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~ 94 (322)
...+||+.++++++ ...||+ |.+ .|++.++.+|.-
T Consensus 14 ~~i~~~l~~lq~~V---gG~ie~-v~l-~~~~~l~~neeG 48 (95)
T PF12957_consen 14 IEIDNSLEALQKLV---GGYIEV-VYL-DDGVVLYCNEEG 48 (95)
T ss_pred EecCCCHHHHHHHH---CCeEEE-Eec-CCCEEEEEeCcc
Confidence 34678899999999 446777 666 667777777754
No 180
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.90 E-value=3.4e+02 Score=25.84 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.3
Q ss_pred CCCChHHHHHHHHcCCeE
Q 020686 297 SQTPTDLVARAHALDLQI 314 (322)
Q Consensus 297 ~~~~~~~v~~ah~~Gl~V 314 (322)
...+.++|+.||+.|..|
T Consensus 122 I~~Tkevve~Ah~~Gv~V 139 (347)
T PRK09196 122 VDVTRKVVEMAHACGVSV 139 (347)
T ss_pred HHHHHHHHHHHHHcCCeE
Confidence 346899999999999876
No 181
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=25.69 E-value=52 Score=29.39 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHcCCCEEEeeeeE
Q 020686 57 PEETAAAYMRAIEEGADFIETDILA 81 (322)
Q Consensus 57 pENT~~Af~~A~~~G~d~iE~DV~l 81 (322)
+|++....+...+.|+|.+|+|+-.
T Consensus 13 ~~~~~~~~~~l~~~Gad~iel~iPf 37 (242)
T cd04724 13 LETTLEILKALVEAGADIIELGIPF 37 (242)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4688888888888899999999744
No 182
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=25.24 E-value=4.6e+02 Score=24.99 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.6
Q ss_pred CCCChHHHHHHHHcCCeEE
Q 020686 297 SQTPTDLVARAHALDLQIH 315 (322)
Q Consensus 297 ~~~~~~~v~~ah~~Gl~V~ 315 (322)
...+.++|+.+|+.|..|=
T Consensus 122 I~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 122 VDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred HHHHHHHHHHHHHcCCeEE
Confidence 3468999999999998773
No 183
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=24.85 E-value=97 Score=22.52 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=27.4
Q ss_pred eeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccceeeccCHHHHccCcccccccCCCcccCCCccccC
Q 020686 79 ILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIIT 158 (322)
Q Consensus 79 V~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~ipt 158 (322)
+-++.||++.++|-.-=.. .+ -+....+.+..|.-.+..+|.-| .+|-+
T Consensus 13 fGi~~dG~LslF~G~P~~~--~v----------------I~sFfqIdv~~Les~~~~~L~~G-------------IrV~~ 61 (75)
T PF08955_consen 13 FGISEDGVLSLFEGPPGEE--KV----------------IQSFFQIDVEKLESSDHDQLKRG-------------IRVRS 61 (75)
T ss_dssp EEEETTTEEEEBSSS-STT---B----------------S-------TTTS-HHHHHHHHH---------------S---
T ss_pred EEEcCCCcEEEEecCCCCC--ch----------------heeeeecCHHHcCHhHHHHHhCC-------------CeeCC
Confidence 3578999999998632110 00 00001124556666666666544 46778
Q ss_pred HHHHHHHHH
Q 020686 159 FEEYISIAL 167 (322)
Q Consensus 159 L~e~l~~~~ 167 (322)
.+|+...+.
T Consensus 62 ~~ey~~vLe 70 (75)
T PF08955_consen 62 KEEYNSVLE 70 (75)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 184
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=24.82 E-value=5.2e+02 Score=23.80 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=13.6
Q ss_pred CCChHHHHHHHHcCCeE
Q 020686 298 QTPTDLVARAHALDLQI 314 (322)
Q Consensus 298 ~~~~~~v~~ah~~Gl~V 314 (322)
..+.++++.+|+.|..|
T Consensus 115 ~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12737 115 AIVKEVVEFCHRYDASV 131 (284)
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 45788888899888876
No 185
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=24.82 E-value=5.5e+02 Score=23.61 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=13.7
Q ss_pred CCChHHHHHHHHcCCeE
Q 020686 298 QTPTDLVARAHALDLQI 314 (322)
Q Consensus 298 ~~~~~~v~~ah~~Gl~V 314 (322)
..+.++++.+|+.|..|
T Consensus 113 ~~T~~vv~~Ah~~gv~V 129 (282)
T TIGR01858 113 KLVKEVVDFCHRQDCSV 129 (282)
T ss_pred HHHHHHHHHHHHcCCeE
Confidence 45788889999888776
No 186
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=24.44 E-value=98 Score=22.45 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=27.6
Q ss_pred CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEE
Q 020686 41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLIC 89 (322)
Q Consensus 41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv 89 (322)
.+...+|.--|. ....=++..|++.|-+.|.|-||+. ..+.-|||
T Consensus 12 ~~~VrlI~~~g~-~lGv~~~~eAl~~A~~~~lDLV~v~---~~~~PPVc 56 (76)
T PF05198_consen 12 APEVRLIDEDGE-QLGVMSLREALRLAKEKGLDLVEVS---PNADPPVC 56 (76)
T ss_dssp -SEEEEE-TTS--EEEEEEHHHHHHHHHHTT-EEEEEE---TTSSS-EE
T ss_pred CCEEEEECCCCc-EeceEEHHHHHHHHHHcCCcEEEEc---CCCCCCeE
Confidence 445556654443 2335578999999999999999988 33334554
No 187
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=24.12 E-value=90 Score=28.38 Aligned_cols=42 Identities=26% Similarity=0.097 Sum_probs=32.5
Q ss_pred CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEc
Q 020686 41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILAS 82 (322)
Q Consensus 41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lT 82 (322)
.+++..|+|==++.--+|.|+...+...+.|+|+||+-+=.+
T Consensus 7 ~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfS 48 (259)
T PF00290_consen 7 EGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFS 48 (259)
T ss_dssp TTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 456677777665556679999999999999999999988664
No 188
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=23.97 E-value=72 Score=27.51 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHhhcCCCC
Q 020686 7 CFIPLLFLSLIAGCAARP 24 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~~ 24 (322)
=++++...++|+||+..+
T Consensus 5 r~~ll~~~l~LsGC~~~s 22 (191)
T PRK10718 5 RLLLLALPLLLTGCSTLS 22 (191)
T ss_pred hhHHHHHHHHHhhccCCC
Confidence 356777889999999743
No 189
>PF07107 WI12: Wound-induced protein WI12; InterPro: IPR009798 This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (Q9XES3 from SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [].
Probab=23.80 E-value=46 Score=25.99 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=8.6
Q ss_pred CeEEEEeCCCC
Q 020686 312 LQIHIGNTTTG 322 (322)
Q Consensus 312 l~V~vWTvn~~ 322 (322)
+=||+|||.|+
T Consensus 40 yWVHaWTV~dG 50 (109)
T PF07107_consen 40 YWVHAWTVKDG 50 (109)
T ss_pred EEEEEEEecCC
Confidence 55899999864
No 190
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=23.72 E-value=5.4e+02 Score=24.52 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCCChHHHHHHHHcCCeE
Q 020686 297 SQTPTDLVARAHALDLQI 314 (322)
Q Consensus 297 ~~~~~~~v~~ah~~Gl~V 314 (322)
...+.++|+.||+.|..|
T Consensus 120 I~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 120 VRVTAEVVAFAHAVGASV 137 (347)
T ss_pred HHHHHHHHHHHHHcCCeE
Confidence 346899999999999876
No 191
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=23.63 E-value=2e+02 Score=25.74 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=18.1
Q ss_pred CCEEEeeeeEcCCCeEEEEeCCCCcc
Q 020686 72 ADFIETDILASKDGVLICHHDVFLDD 97 (322)
Q Consensus 72 ~d~iE~DV~lTkDg~~Vv~HD~~l~r 97 (322)
+.+||.-+.|.+||.. .++...+.+
T Consensus 54 C~GI~ttLtL~~DgTY-~L~~~Ylg~ 78 (234)
T PRK10523 54 CEGIETSLFLEKDGTW-VMNERYLGA 78 (234)
T ss_pred CCCceEEEEEcCCCCE-EEEEEEcCC
Confidence 5679999999999965 445555544
No 192
>PRK10722 hypothetical protein; Provisional
Probab=23.37 E-value=96 Score=27.83 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHhhcCCCCCC
Q 020686 7 CFIPLLFLSLIAGCAARPLY 26 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~~~~~ 26 (322)
.++.++..++|+||+...+.
T Consensus 17 ~~~~~l~~llL~gC~~~~~~ 36 (247)
T PRK10722 17 LWLSGLPCLLLAGCVQNANK 36 (247)
T ss_pred HHHHHHHHHHHHHccCCCCC
Confidence 44456777999999996553
No 193
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=22.95 E-value=93 Score=26.32 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=33.1
Q ss_pred cCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChh
Q 020686 157 ITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPT 232 (322)
Q Consensus 157 ptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~ 232 (322)
..|+++.+.+.+++ ...+.||==.+..-.....+.-+..=++.|.+.|.+.|+.. +|+.+.||-.+
T Consensus 86 ~~L~~~a~~L~~~p-~~~v~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gv~~---------~ri~~~g~Ge~ 151 (173)
T PRK10802 86 QMLDAHANFLRSNP-SYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSA---------DQISIVSYGKE 151 (173)
T ss_pred HHHHHHHHHHHhCC-CceEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHcCCCH---------HHeEEEEecCC
Confidence 35677777776654 23444442111110000001111234667788888888764 47777776543
No 194
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=22.79 E-value=73 Score=27.73 Aligned_cols=46 Identities=30% Similarity=0.366 Sum_probs=33.6
Q ss_pred CCCCCCCchhHHHHHH-HHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686 50 RGSNGEFPEETAAAYM-RAIEEGADFIETDILASKDGVLICHHDVFL 95 (322)
Q Consensus 50 RG~~~~~pENT~~Af~-~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l 95 (322)
.|..|.+.=|-++.-. -|...|+--+|.-|++-||.+.|-.||..+
T Consensus 255 kgsdgharfnelatkaqiaqsfgavnletrvwmpkdevavynhdeyv 301 (347)
T PF06673_consen 255 KGSDGHARFNELATKAQIAQSFGAVNLETRVWMPKDEVAVYNHDEYV 301 (347)
T ss_pred cCCcchhHHHHHHHHHHHHHhcCccceeeeeeccccceeeecccceE
Confidence 3555555556555432 344568888999999999999999999765
No 195
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=22.67 E-value=77 Score=27.69 Aligned_cols=19 Identities=37% Similarity=0.751 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhcCCCCCC
Q 020686 8 FIPLLFLSLIAGCAARPLY 26 (322)
Q Consensus 8 ~~~~~~~~l~~~c~~~~~~ 26 (322)
+++++++++++||+.....
T Consensus 4 i~~l~l~lll~~C~~~~~~ 22 (216)
T PF11153_consen 4 ILLLLLLLLLTGCSTNPNE 22 (216)
T ss_pred HHHHHHHHHHHhhcCCCcc
Confidence 3444577899999996654
No 196
>cd08586 PI-PLCc_BcPLC_like Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which
Probab=22.63 E-value=99 Score=28.34 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCC
Q 020686 57 PEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVF 94 (322)
Q Consensus 57 pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~ 94 (322)
-.|--.++..-++.|+++++++++...++.+.++|...
T Consensus 32 ~~~Q~~~i~~QL~~GiR~lDiR~~~~~~~~l~~~Hg~~ 69 (279)
T cd08586 32 VQCQDWSIAEQLNAGIRFLDIRLRLIDNNDLAIHHGPF 69 (279)
T ss_pred eecCCCCHHHHHhcCCeEEEEEeeecCCCeEEEEccCc
Confidence 45556777888899999999999998878999999754
No 197
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=22.54 E-value=1.3e+02 Score=30.33 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=35.0
Q ss_pred CcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhh
Q 020686 171 RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISN 239 (322)
Q Consensus 171 ~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~ 239 (322)
+.+++.+|...+ .+-+..++.++++|.... .+=+|||+.++|+.+.+
T Consensus 191 ~~vgitiEtRPD-------------~i~~e~L~~L~~~G~~rV---------slGVQS~~d~VL~~inR 237 (522)
T TIGR01211 191 RCVGLTIETRPD-------------YCREEHIDRMLKLGATRV---------ELGVQTIYNDILERTKR 237 (522)
T ss_pred CeEEEEEEEcCC-------------cCCHHHHHHHHHcCCCEE---------EEECccCCHHHHHHhCC
Confidence 357888888542 244677899999998631 45699999999988865
No 198
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=22.53 E-value=6.2e+02 Score=23.36 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=14.7
Q ss_pred CCCChHHHHHHHHcCCeE
Q 020686 297 SQTPTDLVARAHALDLQI 314 (322)
Q Consensus 297 ~~~~~~~v~~ah~~Gl~V 314 (322)
...+.++|+.+|+.|..|
T Consensus 114 i~~T~evv~~Ah~~gv~V 131 (286)
T PRK12738 114 VKLVKSVVDFCHSQDCSV 131 (286)
T ss_pred HHHHHHHHHHHHHcCCeE
Confidence 346889999999998876
No 199
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=22.27 E-value=75 Score=24.25 Aligned_cols=14 Identities=43% Similarity=0.672 Sum_probs=9.5
Q ss_pred HHHHHHHhhcCCCC
Q 020686 11 LLFLSLIAGCAARP 24 (322)
Q Consensus 11 ~~~~~l~~~c~~~~ 24 (322)
...++|++||++.+
T Consensus 10 ~~~~~L~~GCAsts 23 (96)
T PF11839_consen 10 ALAALLLAGCASTS 23 (96)
T ss_pred HHHHHHHhHccCCc
Confidence 33457888999833
No 200
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=21.91 E-value=90 Score=27.53 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhcCCCC
Q 020686 9 IPLLFLSLIAGCAARP 24 (322)
Q Consensus 9 ~~~~~~~l~~~c~~~~ 24 (322)
+.+..+++|+||+...
T Consensus 6 ~~l~~~l~LsgCa~~~ 21 (215)
T PF05643_consen 6 LGLAAALLLSGCATTK 21 (215)
T ss_pred HHHHHHHHHhhccCCC
Confidence 3344567899998643
No 201
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.75 E-value=3.4e+02 Score=20.41 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=46.5
Q ss_pred CCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccCh
Q 020686 152 GKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAP 231 (322)
Q Consensus 152 ~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~ 231 (322)
+...+|--.|+++.+++.+..+.+.= | .+....+.+.+-|++.|+.-. ..-++.|-..
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~lT--------N------ns~~s~~~~~~~L~~~Gi~~~--------~~~i~ts~~~ 69 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFLT--------N------NSSRSREEYAKKLKKLGIPVD--------EDEIITSGMA 69 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEEE--------S-------SSS-HHHHHHHHHHTTTT----------GGGEEEHHHH
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEEe--------C------CCCCCHHHHHHHHHhcCcCCC--------cCEEEChHHH
Confidence 44689999999999988764332221 1 223445777888899998642 1234444443
Q ss_pred hHHHHHhhcCCCCeEEEEecc
Q 020686 232 TSLVYISNKTDSPKIFLIDDV 252 (322)
Q Consensus 232 ~~l~~~~~~~~~~~v~l~~~~ 252 (322)
...++++..+..++++++..
T Consensus 70 -~~~~l~~~~~~~~v~vlG~~ 89 (101)
T PF13344_consen 70 -AAEYLKEHKGGKKVYVLGSD 89 (101)
T ss_dssp -HHHHHHHHTTSSEEEEES-H
T ss_pred -HHHHHHhcCCCCEEEEEcCH
Confidence 35567766677888887654
No 202
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.24 E-value=6.3e+02 Score=23.22 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=13.6
Q ss_pred CCChHHHHHHHHcCCeE
Q 020686 298 QTPTDLVARAHALDLQI 314 (322)
Q Consensus 298 ~~~~~~v~~ah~~Gl~V 314 (322)
..+.++++.+|..|..|
T Consensus 115 ~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12857 115 ALTKKVVEIAHAVGVSV 131 (284)
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 45788888898888766
No 203
>TIGR00724 urea_amlyse_rel biotin-dependent carboxylase uncharacterized domain. Urea amidolyase of Saccharomyces cerevisiae is a 1835 amino acid protein with an amidase domain, a biotin/lipoyl cofactor attachment domain, a carbamoyl-phosphate synthase L chain-like domain, and uncharacterized regions. It has both urea carboxylase and allophanate hydrolase activities. This alignment models a domain that represents uncharacterized prokaryotic proteins of about 300 amino acids, regions of prokaryotic urea carboxylase and of the urea carboxylase region of yeast urea amidolyase, and regions of other biotin-containing proteins.
Probab=21.19 E-value=1.6e+02 Score=27.61 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=39.2
Q ss_pred eeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccceeeccCHHHHccCcccccccCCCcccCCCcccc
Q 020686 78 DILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPII 157 (322)
Q Consensus 78 DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~ip 157 (322)
-||++.||+|||+.-+ .-||++- | +-| .|....+..|-+++.+.... ++..
T Consensus 237 aIQvp~~G~PIILl~D--~qTtGGY-----P------------ki~-~V~~~Dl~~LaQ~~pG~~vr---------F~~v 287 (314)
T TIGR00724 237 SIQVPPNGQPIILMAD--AQTTGGY-----P------------KIA-VVIEADLWKVAQVRPGQSIK---------FVPL 287 (314)
T ss_pred eEEECcCCceEEEcCC--CCCCCCc-----c------------eeE-EEehhhhhHHhccCCCCeEE---------EEEC
Confidence 4799999999988743 1234432 1 113 47777777778887775443 4566
Q ss_pred CHHHHHHHHH
Q 020686 158 TFEEYISIAL 167 (322)
Q Consensus 158 tL~e~l~~~~ 167 (322)
+++|..+..+
T Consensus 288 ~~~eA~~~~~ 297 (314)
T TIGR00724 288 SLEEALKLRE 297 (314)
T ss_pred CHHHHHHHHH
Confidence 7888877554
No 204
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=20.63 E-value=1.8e+02 Score=26.77 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=38.8
Q ss_pred eeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccceeeccCHHHHccCcccccccCCCcccCCCccc
Q 020686 77 TDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPI 156 (322)
Q Consensus 77 ~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~i 156 (322)
--||++.||+|||+--+ .-||++- | +-| .|....+..|-+++.+.... ++.
T Consensus 215 G~IQvp~~G~PIILl~D--~qTtGGY-----P------------kI~-~V~~~dl~~LaQ~~pG~~vr---------F~~ 265 (280)
T smart00797 215 GAIQVPPDGQPIILLAD--RQTTGGY-----P------------KIA-TVISADLWKLAQLRPGDKVR---------FVP 265 (280)
T ss_pred ceEEeCCCCceEEEeCC--CCCCCCc-----c------------ceE-EEehhhhhHHhccCCCCeEE---------EEE
Confidence 35899999999887542 1233432 1 113 46777777777777765432 466
Q ss_pred cCHHHHHHHHH
Q 020686 157 ITFEEYISIAL 167 (322)
Q Consensus 157 ptL~e~l~~~~ 167 (322)
.+++|..+..+
T Consensus 266 v~~~ea~~~~~ 276 (280)
T smart00797 266 VSLEEAQALLR 276 (280)
T ss_pred CCHHHHHHHHH
Confidence 78888876543
No 205
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.32 E-value=1.9e+02 Score=23.96 Aligned_cols=35 Identities=26% Similarity=0.143 Sum_probs=28.3
Q ss_pred CCeEEeeCCCCCC--CchhHHHHHHHHHHcCCCEEEe
Q 020686 43 RPYNLAHRGSNGE--FPEETAAAYMRAIEEGADFIET 77 (322)
Q Consensus 43 ~p~iiaHRG~~~~--~pENT~~Af~~A~~~G~d~iE~ 77 (322)
+..++++-|+... ..+.++...+.|.+.|+|++.+
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 5667788777553 3789999999999999999987
No 206
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=20.10 E-value=92 Score=25.06 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhcCCCC
Q 020686 9 IPLLFLSLIAGCAARP 24 (322)
Q Consensus 9 ~~~~~~~l~~~c~~~~ 24 (322)
++.+++++|+||..+.
T Consensus 10 ~~~l~~~~L~GCQq~~ 25 (128)
T TIGR01004 10 AFGLCCVSLSGCQQNP 25 (128)
T ss_pred HHHHHHHHHHHccCCC
Confidence 4444445599999855
No 207
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=20.09 E-value=82 Score=21.76 Aligned_cols=16 Identities=19% Similarity=0.494 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhhcCC
Q 020686 7 CFIPLLFLSLIAGCAA 22 (322)
Q Consensus 7 ~~~~~~~~~l~~~c~~ 22 (322)
++++++.+++++||..
T Consensus 3 l~~~~~~~~~l~gCtP 18 (59)
T PF13617_consen 3 LLLLLALALALTGCTP 18 (59)
T ss_pred hHHHHHHHHHHccCCC
Confidence 5667777788899985
No 208
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.01 E-value=86 Score=26.80 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=12.3
Q ss_pred HHHHHHHHhhcCCCCCC
Q 020686 10 PLLFLSLIAGCAARPLY 26 (322)
Q Consensus 10 ~~~~~~l~~~c~~~~~~ 26 (322)
+..++++||||.+.+..
T Consensus 13 ~~~laflLsgC~tiPk~ 29 (191)
T COG3065 13 IGTLAFLLSGCVTIPKA 29 (191)
T ss_pred HHHHHHHHhhcccCChh
Confidence 34556889999996654
Done!