Query 020687
Match_columns 322
No_of_seqs 166 out of 383
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 04:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 2.4E-29 5.3E-34 231.2 23.6 169 139-322 47-216 (219)
2 PF03168 LEA_2: Late embryogen 99.3 1.8E-12 3.8E-17 102.7 6.6 99 194-301 1-100 (101)
3 smart00769 WHy Water Stress an 97.3 0.0014 3.1E-08 52.9 8.5 60 186-246 12-72 (100)
4 PF07092 DUF1356: Protein of u 95.5 0.17 3.6E-06 47.8 11.1 110 186-301 121-234 (238)
5 COG5608 LEA14-like dessication 94.4 0.97 2.1E-05 40.1 11.9 59 189-248 50-109 (161)
6 PF12751 Vac7: Vacuolar segreg 93.7 0.24 5.2E-06 49.6 7.8 60 152-223 322-381 (387)
7 PLN03160 uncharacterized prote 92.9 3.1 6.6E-05 38.6 13.4 101 122-240 32-148 (219)
8 PF15145 DUF4577: Domain of un 87.0 0.68 1.5E-05 39.1 3.3 30 127-156 59-88 (128)
9 TIGR02588 conserved hypothetic 83.7 3.1 6.7E-05 35.6 5.8 36 135-170 8-45 (122)
10 PRK10893 lipopolysaccharide ex 74.4 16 0.00035 33.2 7.8 36 139-174 10-56 (192)
11 COG1580 FliL Flagellar basal b 73.9 13 0.00029 33.0 7.0 25 131-155 19-43 (159)
12 COG4736 CcoQ Cbb3-type cytochr 71.3 2.4 5.2E-05 32.0 1.4 22 137-158 13-34 (60)
13 PF05545 FixQ: Cbb3-type cytoc 68.5 3.1 6.7E-05 29.5 1.4 22 137-158 13-34 (49)
14 PHA02680 ORF090 IMV phosphoryl 65.3 4.5 9.8E-05 32.7 1.9 30 131-160 49-78 (91)
15 PHA03049 IMV membrane protein; 64.8 3.8 8.2E-05 31.5 1.3 22 136-157 5-26 (68)
16 PRK06531 yajC preprotein trans 64.3 3.1 6.7E-05 35.1 0.9 17 145-161 11-27 (113)
17 PF08113 CoxIIa: Cytochrome c 62.6 4.7 0.0001 27.0 1.3 15 138-152 10-24 (34)
18 PHA02898 virion envelope prote 58.4 6.2 0.00013 32.0 1.6 30 131-160 48-78 (92)
19 PF05961 Chordopox_A13L: Chord 58.3 5.5 0.00012 30.7 1.2 23 136-158 5-27 (68)
20 PF15012 DUF4519: Domain of un 57.4 9.9 0.00022 28.3 2.4 19 139-157 38-56 (56)
21 cd01324 cbb3_Oxidase_CcoQ Cyto 56.5 7.6 0.00016 27.8 1.6 24 135-158 12-35 (48)
22 PF09624 DUF2393: Protein of u 52.4 65 0.0014 27.5 7.1 72 145-233 32-105 (149)
23 KOG2952 Cell cycle control pro 52.0 39 0.00084 33.8 6.3 18 210-235 114-131 (351)
24 KOG3950 Gamma/delta sarcoglyca 52.0 16 0.00035 34.9 3.5 21 188-208 107-127 (292)
25 PF09911 DUF2140: Uncharacteri 51.1 19 0.00041 32.7 3.7 28 132-159 4-31 (187)
26 PF14155 DUF4307: Domain of un 50.2 72 0.0016 26.5 6.8 29 144-175 16-45 (112)
27 PRK14762 membrane protein; Pro 46.1 26 0.00056 22.1 2.6 18 133-150 10-27 (27)
28 PF04478 Mid2: Mid2 like cell 45.5 16 0.00034 32.5 2.2 22 140-161 61-82 (154)
29 PRK05529 cell division protein 45.1 34 0.00074 32.3 4.6 52 158-210 58-128 (255)
30 PF01102 Glycophorin_A: Glycop 44.2 11 0.00024 32.2 1.0 27 139-165 74-101 (122)
31 COG5353 Uncharacterized protei 44.1 15 0.00032 32.7 1.8 28 131-158 8-35 (161)
32 PHA03048 IMV membrane protein; 43.7 16 0.00034 29.8 1.8 31 128-158 43-75 (93)
33 PHA02902 putative IMV membrane 42.0 10 0.00022 29.1 0.4 19 139-157 9-27 (70)
34 KOG2927 Membrane component of 41.2 16 0.00034 36.6 1.7 17 102-118 158-174 (372)
35 PF09677 TrbI_Ftype: Type-F co 39.5 23 0.0005 29.6 2.3 34 128-162 1-34 (111)
36 PF12505 DUF3712: Protein of u 39.5 72 0.0016 26.5 5.3 25 189-214 100-124 (125)
37 PRK05886 yajC preprotein trans 39.5 12 0.00025 31.5 0.4 19 142-160 10-28 (109)
38 TIGR02744 TrbI_Ftype type-F co 38.7 35 0.00076 28.8 3.2 31 133-163 6-36 (112)
39 PF06092 DUF943: Enterobacteri 38.3 21 0.00046 31.8 1.9 18 141-158 13-30 (157)
40 KOG3927 Na+/K+ ATPase, beta su 38.2 16 0.00034 35.9 1.2 24 139-162 55-81 (300)
41 PF03100 CcmE: CcmE; InterPro 37.8 76 0.0016 26.9 5.2 20 210-235 81-100 (131)
42 PHA02681 ORF089 virion membran 37.3 13 0.00028 29.9 0.4 19 139-157 9-27 (92)
43 PF06716 DUF1201: Protein of u 36.2 21 0.00046 25.8 1.3 23 132-154 8-32 (54)
44 PF11395 DUF2873: Protein of u 34.5 25 0.00054 24.2 1.3 13 142-154 20-32 (43)
45 PTZ00200 cysteine proteinase; 34.5 35 0.00077 35.1 3.1 25 131-155 45-69 (448)
46 KOG0811 SNARE protein PEP12/VA 33.6 23 0.0005 34.2 1.5 22 134-155 247-268 (269)
47 PF06667 PspB: Phage shock pro 33.0 19 0.00041 28.3 0.7 21 135-155 5-25 (75)
48 PF06024 DUF912: Nucleopolyhed 32.9 57 0.0012 26.6 3.5 29 132-160 64-92 (101)
49 PRK13254 cytochrome c-type bio 32.7 1.5E+02 0.0033 26.0 6.4 18 136-153 13-30 (148)
50 PF05568 ASFV_J13L: African sw 32.6 14 0.0003 32.8 -0.2 34 140-173 40-73 (189)
51 PF04790 Sarcoglycan_1: Sarcog 32.3 28 0.0006 33.5 1.8 18 186-203 83-100 (264)
52 PF12321 DUF3634: Protein of u 32.1 25 0.00055 29.5 1.3 21 141-162 5-27 (108)
53 PF12606 RELT: Tumour necrosis 31.5 21 0.00046 25.9 0.7 25 134-158 4-28 (50)
54 COG4698 Uncharacterized protei 31.4 41 0.00088 30.9 2.6 36 133-168 13-48 (197)
55 PF14257 DUF4349: Domain of un 31.3 43 0.00092 31.4 2.9 17 139-155 246-262 (262)
56 PF07787 DUF1625: Protein of u 31.0 39 0.00086 31.6 2.6 12 145-156 237-248 (248)
57 COG1589 FtsQ Cell division sep 30.7 54 0.0012 31.1 3.5 79 139-218 38-135 (269)
58 PHA02831 EEV host range protei 30.0 53 0.0012 31.6 3.3 15 137-151 240-254 (268)
59 PF05767 Pox_A14: Poxvirus vir 29.6 29 0.00063 28.3 1.2 26 131-156 48-74 (92)
60 PF03908 Sec20: Sec20; InterP 29.5 45 0.00097 26.5 2.3 14 138-151 76-89 (92)
61 PF13473 Cupredoxin_1: Cupredo 29.2 33 0.00071 27.4 1.5 50 147-203 6-55 (104)
62 PF08114 PMP1_2: ATPase proteo 28.7 31 0.00067 24.2 1.0 19 133-151 12-30 (43)
63 PF09604 Potass_KdpF: F subuni 28.6 31 0.00068 21.6 1.0 21 138-158 4-24 (25)
64 PF14283 DUF4366: Domain of un 28.2 44 0.00096 31.2 2.4 24 138-161 167-190 (218)
65 PF10856 DUF2678: Protein of u 27.9 77 0.0017 27.0 3.5 30 128-157 28-58 (118)
66 PF14828 Amnionless: Amnionles 27.9 35 0.00077 35.0 1.8 30 132-161 340-369 (437)
67 PF11837 DUF3357: Domain of un 27.2 21 0.00045 29.5 0.0 19 131-149 30-48 (106)
68 PTZ00382 Variant-specific surf 27.0 43 0.00094 27.2 1.8 16 140-155 77-92 (96)
69 PF10907 DUF2749: Protein of u 26.7 64 0.0014 24.8 2.6 16 142-157 13-28 (66)
70 KOG1094 Discoidin domain recep 26.4 52 0.0011 35.6 2.7 26 127-152 389-414 (807)
71 PF13396 PLDc_N: Phospholipase 26.4 73 0.0016 21.7 2.7 19 139-157 28-46 (46)
72 TIGR00739 yajC preprotein tran 26.1 32 0.0007 27.3 0.9 16 145-160 12-27 (84)
73 PF12751 Vac7: Vacuolar segreg 25.4 74 0.0016 32.3 3.5 32 139-170 312-345 (387)
74 PHA02642 C-type lectin-like pr 25.1 55 0.0012 30.6 2.4 25 128-152 51-76 (216)
75 PF14812 PBP1_TM: Transmembran 23.7 8.3 0.00018 30.8 -2.8 6 131-136 67-72 (81)
76 PF02009 Rifin_STEVOR: Rifin/s 23.7 37 0.00081 33.2 1.0 18 139-156 264-281 (299)
77 PRK05696 fliL flagellar basal 23.1 63 0.0014 28.6 2.3 17 205-221 85-101 (170)
78 COG1862 YajC Preprotein transl 23.0 32 0.0007 28.3 0.4 15 146-160 19-33 (97)
79 TIGR02976 phageshock_pspB phag 22.7 37 0.0008 26.6 0.6 20 136-155 6-25 (75)
80 PF06072 Herpes_US9: Alphaherp 22.6 60 0.0013 24.5 1.7 7 146-152 53-59 (60)
81 PF14654 Epiglycanin_C: Mucin, 22.4 93 0.002 25.9 2.9 23 131-153 20-42 (106)
82 PF14927 Neurensin: Neurensin 22.4 1.1E+02 0.0025 26.7 3.7 28 134-162 47-75 (140)
83 PF06835 LptC: Lipopolysacchar 22.3 2.5E+02 0.0055 23.5 5.9 7 197-203 61-67 (176)
84 PF11770 GAPT: GRB2-binding ad 22.3 96 0.0021 27.7 3.2 25 139-163 19-43 (158)
85 TIGR02115 potass_kdpF K+-trans 22.2 25 0.00055 22.2 -0.3 21 138-158 3-23 (26)
86 PRK12785 fliL flagellar basal 22.0 3.7E+02 0.008 23.7 7.0 15 206-220 86-100 (166)
87 PF11337 DUF3139: Protein of u 21.8 71 0.0015 25.0 2.1 18 139-156 13-30 (85)
88 PRK14094 psbM photosystem II r 21.8 1.1E+02 0.0023 22.2 2.7 18 139-156 14-31 (50)
89 PRK14759 potassium-transportin 21.4 59 0.0013 21.2 1.2 22 137-158 7-28 (29)
90 PRK09458 pspB phage shock prot 21.3 43 0.00093 26.4 0.7 21 135-155 5-25 (75)
91 PF08135 EPV_E5: Major transfo 21.3 58 0.0013 22.9 1.3 23 131-153 8-30 (44)
92 PRK05585 yajC preprotein trans 21.2 39 0.00084 28.0 0.5 16 145-160 27-42 (106)
93 PF15102 TMEM154: TMEM154 prot 21.1 1E+02 0.0022 27.3 3.1 24 136-159 66-89 (146)
94 COG1463 Ttg2C ABC-type transpo 21.0 75 0.0016 31.4 2.6 27 132-158 8-34 (359)
95 PHA02844 putative transmembran 20.9 88 0.0019 24.6 2.4 13 140-152 57-69 (75)
96 PRK13836 conjugal transfer pro 20.8 98 0.0021 28.5 3.2 29 131-159 32-61 (220)
97 PF08693 SKG6: Transmembrane a 20.7 32 0.00069 23.9 -0.1 14 143-156 25-38 (40)
98 PF00672 HAMP: HAMP domain; I 20.5 81 0.0018 22.6 2.1 16 141-156 11-26 (70)
99 PF10694 DUF2500: Protein of u 20.4 81 0.0018 25.9 2.3 33 138-170 7-44 (110)
100 PRK11486 flagellar biosynthesi 20.1 52 0.0011 28.3 1.1 24 132-155 18-41 (124)
101 PF14030 DUF4245: Protein of u 20.1 72 0.0016 28.4 2.0 19 135-153 9-27 (169)
102 KOG3385 V-SNARE [Intracellular 20.0 1E+02 0.0022 26.3 2.7 14 139-152 104-117 (118)
103 COG4743 Predicted membrane pro 20.0 3.6E+02 0.0078 26.2 6.7 52 133-192 173-225 (316)
104 PF05283 MGC-24: Multi-glycosy 20.0 61 0.0013 29.7 1.6 21 132-152 160-180 (186)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=231.24 Aligned_cols=169 Identities=10% Similarity=0.182 Sum_probs=136.8
Q ss_pred HHHHHHHHHhheeeeeeCCCCEEEEeeeEEEeEEeccCCCCCCccceeEEEEEEEEEEEecCCCeEEEEEcCceEEEEEc
Q 020687 139 FFLLFSLFSLILWGASKSQKPKITMKSINFEHFKIQAGSDFSGVATDMITVNSTVKMIYRNTGTFFGVHVTSNPLDLSYS 218 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP~kP~fsV~s~~v~~fnv~~gsd~sgvpt~~Ls~n~tv~v~~rNPN~~~GI~Y~~~~v~l~Y~ 218 (322)
+++|+++++.++|+++|||.|+|+|.+++|++|++..+. .+...++++++++|+++|||. +||+|+..++.++|+
T Consensus 47 ~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~----~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v~Y~ 121 (219)
T PLN03160 47 LLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNT----TLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTIYYG 121 (219)
T ss_pred HHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCC----CCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEEEEC
Confidence 455577777889999999999999999999999997521 123356667788889999999 899999999999999
Q ss_pred ceeeecCCCCcccccCCCeEEEEEEEEeeeeeccCCcccccccccCCCCcccEeEEEEEEEEEEEEEeeeEEcceeeEEE
Q 020687 219 EITIASGAIRKFYQSRKSQKTVSVAVMGNKIPLYGSGAGLSINSTTGSTSHPVPLNLNFVVRSRAYVLGKLVKPKFYKNI 298 (322)
Q Consensus 219 ~~~lasg~lp~FYQ~~kstt~v~~~l~G~~vpL~gag~~L~~~~~~~~~~g~VpL~L~~~vrvR~~vlG~lv~~k~~~~V 298 (322)
|..+|.+.+|+|||++++++.+.+.+.....-+.. +..|.. |...|.|||+++.+++.|+++ |++.++++..++
T Consensus 122 g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~-~~~L~~----D~~~G~v~l~~~~~v~gkVkv-~~i~k~~v~~~v 195 (219)
T PLN03160 122 GTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS-VPGLLT----DISSGLLNMNSYTRIGGKVKI-LKIIKKHVVVKM 195 (219)
T ss_pred CEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc-chhHHH----HhhCCeEEEEEEEEEEEEEEE-EEEEEEEEEEEE
Confidence 99999999999999999999999886543321222 344544 256889999999999999884 678899999999
Q ss_pred EEEEEecCCCCCCCccc-cCCceeC
Q 020687 299 ACSITFDPKKLNVPVSL-KNSCTYD 322 (322)
Q Consensus 299 ~C~l~v~~~~~~~pi~l-~~sC~~~ 322 (322)
+|++.|+... ..+ ...|+++
T Consensus 196 ~C~v~V~~~~----~~i~~~~C~~~ 216 (219)
T PLN03160 196 NCTMTVNITS----QAIQGQKCKRH 216 (219)
T ss_pred EeEEEEECCC----CEEeccEeccc
Confidence 9999998532 355 6789764
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.35 E-value=1.8e-12 Score=102.65 Aligned_cols=99 Identities=23% Similarity=0.346 Sum_probs=73.5
Q ss_pred EEEEecCCCeEEEEEcCceEEEEEcceeee-cCCCCcccccCCCeEEEEEEEEeeeeeccCCcccccccccCCCCcccEe
Q 020687 194 KMIYRNTGTFFGVHVTSNPLDLSYSEITIA-SGAIRKFYQSRKSQKTVSVAVMGNKIPLYGSGAGLSINSTTGSTSHPVP 272 (322)
Q Consensus 194 ~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~la-sg~lp~FYQ~~kstt~v~~~l~G~~vpL~gag~~L~~~~~~~~~~g~Vp 272 (322)
+|.++|||. |+|+|++.++.++|++..|| .+.+++|+|++++++++.+.+..+...| ...+.+ . . .+.++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~--~--~-~~~~~ 71 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKD--L--L-AGRVP 71 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHH--H--H-HTTSC
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHh--h--h-ccccc
Confidence 478999999 99999999999999999999 7788999999999999999887776555 333333 1 2 34677
Q ss_pred EEEEEEEEEEEEEeeeEEcceeeEEEEEE
Q 020687 273 LNLNFVVRSRAYVLGKLVKPKFYKNIACS 301 (322)
Q Consensus 273 L~L~~~vrvR~~vlG~lv~~k~~~~V~C~ 301 (322)
+++.++++.++++++.....++++.++|.
T Consensus 72 ~~v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 72 FDVTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred eEEEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 88888888888865544445555666653
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=97.32 E-value=0.0014 Score=52.89 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=53.4
Q ss_pred eEEEEEEEEEEEecCCCeEEEEEcCceEEEEEcceeeecCCCC-cccccCCCeEEEEEEEEe
Q 020687 186 MITVNSTVKMIYRNTGTFFGVHVTSNPLDLSYSEITIASGAIR-KFYQSRKSQKTVSVAVMG 246 (322)
Q Consensus 186 ~Ls~n~tv~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~lasg~lp-~FYQ~~kstt~v~~~l~G 246 (322)
.+...+.+++.+.|||.+ .+.|+.....++|++..||.|..+ ..-.+.++++.+.+.+.-
T Consensus 12 ~~~~~~~l~l~v~NPN~~-~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~ 72 (100)
T smart00769 12 GLEIEIVLKVKVQNPNPF-PIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTV 72 (100)
T ss_pred ceEEEEEEEEEEECCCCC-ccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEe
Confidence 356778888999999995 999999999999999999999985 799999999999888776
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=95.52 E-value=0.17 Score=47.78 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=63.6
Q ss_pred eEEEEEEEEEEEecCCCeEEEEEcCceEEEEEcceeeecCCCCcc-cccCCCeEEEEEEEEeeeeeccCC-ccccccccc
Q 020687 186 MITVNSTVKMIYRNTGTFFGVHVTSNPLDLSYSEITIASGAIRKF-YQSRKSQKTVSVAVMGNKIPLYGS-GAGLSINST 263 (322)
Q Consensus 186 ~Ls~n~tv~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~lasg~lp~F-YQ~~kstt~v~~~l~G~~vpL~ga-g~~L~~~~~ 263 (322)
.+.+|++-.+.+.|||= +-|.+....+++.|....+|.+.+... .-+.++.+.+...+.. .+..-.. ...+=. .
T Consensus 121 ~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t-~i~~~~~yv~~~Ct--~ 196 (238)
T PF07092_consen 121 TVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKT-TIGDENSYVYKYCT--W 196 (238)
T ss_pred EEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeE-EecCcchhHhHhhc--C
Confidence 57889998999999995 699999999999999999998866433 3344455444443332 1110000 011111 0
Q ss_pred CCCCcccEeEEEEEEEEEEEEEeeeE--EcceeeEEEEEE
Q 020687 264 TGSTSHPVPLNLNFVVRSRAYVLGKL--VKPKFYKNIACS 301 (322)
Q Consensus 264 ~~~~~g~VpL~L~~~vrvR~~vlG~l--v~~k~~~~V~C~ 301 (322)
....-..+-|.+++++..- | +|-- ..-.-+..|+|.
T Consensus 197 ~~ikvH~i~l~~Q~Tvt~s-Y-L~H~eQ~s~e~y~yVDC~ 234 (238)
T PF07092_consen 197 PKIKVHNIVLHMQGTVTVS-Y-LSHSEQLSLETYQYVDCG 234 (238)
T ss_pred ccceEEEEEEEEEEEEEEE-E-EecccccceeeEEEEEec
Confidence 0012235667776666663 3 4421 122345678884
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=94.37 E-value=0.97 Score=40.13 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=49.4
Q ss_pred EEEEEEEEEecCCCeEEEEEcCceEEEEEcceeeecCCC-CcccccCCCeEEEEEEEEeee
Q 020687 189 VNSTVKMIYRNTGTFFGVHVTSNPLDLSYSEITIASGAI-RKFYQSRKSQKTVSVAVMGNK 248 (322)
Q Consensus 189 ~n~tv~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~lasg~l-p~FYQ~~kstt~v~~~l~G~~ 248 (322)
..+-.++.++|||.+ -|-+......++-+|+.+|.|.. ..|.-+.++..++.+.+.-+.
T Consensus 50 ~EiV~t~KiyNPN~f-PipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~ 109 (161)
T COG5608 50 TEIVGTLKIYNPNPF-PIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDN 109 (161)
T ss_pred eEEEEEEEecCCCCc-ceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEeh
Confidence 345567788999995 89999999899999999999965 669999999999998876554
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=93.72 E-value=0.24 Score=49.65 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=40.2
Q ss_pred eeeeCCCCEEEEeeeEEEeEEeccCCCCCCccceeEEEEEEEEEEEecCCCeEEEEEcCceEEEEEcceeee
Q 020687 152 GASKSQKPKITMKSINFEHFKIQAGSDFSGVATDMITVNSTVKMIYRNTGTFFGVHVTSNPLDLSYSEITIA 223 (322)
Q Consensus 152 lv~RP~kP~fsV~s~~v~~fnv~~gsd~sgvpt~~Ls~n~tv~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~la 223 (322)
+++=-.||--.|+=+.|+|.-.++- -|-+ .|.|.+.|||- |.|.++..++.||=+..-++
T Consensus 322 Fv~AttKpL~~v~v~~I~NVlaS~q---------ELmf--dl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 322 FVFATTKPLTDVQVVSIQNVLASEQ---------ELMF--DLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred hhhhcCcccccceEEEeeeeeeccc---------eEEE--eeEEEEECCCe-EEEEeccceeeeEecCCccC
Confidence 3334456666777777777665441 2334 45677999997 59999999999985544343
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=92.92 E-value=3.1 Score=38.62 Aligned_cols=101 Identities=12% Similarity=0.164 Sum_probs=69.1
Q ss_pred cCCCCceee-hhHHHHHHHHHHHHHHHhheeeeeeC--CCCEEEEeeeEEEe-------EEeccCCCCCCccceeEEEEE
Q 020687 122 RRSGLPRRC-YFLAFVLGFFLLFSLFSLILWGASKS--QKPKITMKSINFEH-------FKIQAGSDFSGVATDMITVNS 191 (322)
Q Consensus 122 ~~~~~~r~c-~~~~~ll~~vlL~gl~~LIlWlv~RP--~kP~fsV~s~~v~~-------fnv~~gsd~sgvpt~~Ls~n~ 191 (322)
.++.+.+|| |++++++.++++++++++.++=.-+| +--.++|+++.+.. +|+ .|.+++
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~------------tl~~~v 99 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNI------------TLIADV 99 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEE------------EEEEEE
Confidence 344577777 88888888888888888877777899 56678888887753 232 232322
Q ss_pred E------EEEEEecCCCeEEEEEcCceEEEEEcceeeecCCCCcccccCCCeEEE
Q 020687 192 T------VKMIYRNTGTFFGVHVTSNPLDLSYSEITIASGAIRKFYQSRKSQKTV 240 (322)
Q Consensus 192 t------v~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~lasg~lp~FYQ~~kstt~v 240 (322)
+ +.+.+. +....++|+...+ +...+..|..+++.+.+.+.+..
T Consensus 100 ~v~NPN~~~~~Y~--~~~~~v~Y~g~~v----G~a~~p~g~~~ar~T~~l~~tv~ 148 (219)
T PLN03160 100 SVKNPNVASFKYS--NTTTTIYYGGTVV----GEARTPPGKAKARRTMRMNVTVD 148 (219)
T ss_pred EEECCCceeEEEc--CeEEEEEECCEEE----EEEEcCCcccCCCCeEEEEEEEE
Confidence 2 234453 4457889988655 34567778888888888888854
No 8
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=86.99 E-value=0.68 Score=39.07 Aligned_cols=30 Identities=13% Similarity=0.467 Sum_probs=25.3
Q ss_pred ceeehhHHHHHHHHHHHHHHHhheeeeeeC
Q 020687 127 PRRCYFLAFVLGFFLLFSLFSLILWGASKS 156 (322)
Q Consensus 127 ~r~c~~~~~ll~~vlL~gl~~LIlWlv~RP 156 (322)
.|+.+|+++++++++-++++.++++|+++-
T Consensus 59 ~~~lffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 59 SRSLFFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHheeec
Confidence 355589999999999999999999998764
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=83.66 E-value=3.1 Score=35.60 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhe--eeeeeCCCCEEEEeeeEEEe
Q 020687 135 FVLGFFLLFSLFSLIL--WGASKSQKPKITMKSINFEH 170 (322)
Q Consensus 135 ~ll~~vlL~gl~~LIl--Wlv~RP~kP~fsV~s~~v~~ 170 (322)
|.+++++|++++.||+ |+.-+++.|.+.+.-.....
T Consensus 8 ~~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r 45 (122)
T TIGR02588 8 FGISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER 45 (122)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE
Confidence 3445666777777766 56667789999876655443
No 10
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=74.35 E-value=16 Score=33.23 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=26.1
Q ss_pred HHHHHHHHHhheeee-----------eeCCCCEEEEeeeEEEeEEec
Q 020687 139 FFLLFSLFSLILWGA-----------SKSQKPKITMKSINFEHFKIQ 174 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv-----------~RP~kP~fsV~s~~v~~fnv~ 174 (322)
+||.+++.+|+.|.. ..++.|.|.+++++...|+.+
T Consensus 10 ~il~~~~l~l~~W~l~~~~~~~~~~~~~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 10 ILLALIALVLIGWNLADKDEDTAPVVVNNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred HHHHHHHHHHHHhhccCCccccccccCCCCCCCEEEeccEEEEECCC
Confidence 444445556666643 357889999999999999875
No 11
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=73.93 E-value=13 Score=33.00 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHhheeeeee
Q 020687 131 YFLAFVLGFFLLFSLFSLILWGASK 155 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LIlWlv~R 155 (322)
+++.+++.+++++++++.++|+..+
T Consensus 19 ~I~liv~ivl~~~a~~~~~~~~~~~ 43 (159)
T COG1580 19 WILLIVLIVLLALAGAGYFFWFGSK 43 (159)
T ss_pred ehHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5566666566677777788888864
No 12
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=71.29 E-value=2.4 Score=31.95 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhheeeeeeCCC
Q 020687 137 LGFFLLFSLFSLILWGASKSQK 158 (322)
Q Consensus 137 l~~vlL~gl~~LIlWlv~RP~k 158 (322)
+++++++.+++.++|.++||++
T Consensus 13 ~~t~~~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 13 WGTIAFTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3456666677889999999975
No 13
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=68.52 E-value=3.1 Score=29.50 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhheeeeeeCCC
Q 020687 137 LGFFLLFSLFSLILWGASKSQK 158 (322)
Q Consensus 137 l~~vlL~gl~~LIlWlv~RP~k 158 (322)
+.+++++++++.|+|.+++|++
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 3466677777788888888873
No 14
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=65.26 E-value=4.5 Score=32.72 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHhheeeeeeCCCCE
Q 020687 131 YFLAFVLGFFLLFSLFSLILWGASKSQKPK 160 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LIlWlv~RP~kP~ 160 (322)
.+.+|+++.++++|++.+-.|.-.+|.+|.
T Consensus 49 Sii~FIlG~vl~lGilifs~y~~C~~~~~~ 78 (91)
T PHA02680 49 SVTCFIVGAVLLLGLFVFSMYRKCSGSMPY 78 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcee
Confidence 678999999999999999999988887775
No 15
>PHA03049 IMV membrane protein; Provisional
Probab=64.80 E-value=3.8 Score=31.49 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhheeeeeeCC
Q 020687 136 VLGFFLLFSLFSLILWGASKSQ 157 (322)
Q Consensus 136 ll~~vlL~gl~~LIlWlv~RP~ 157 (322)
++.+++.+++++||+|++++-+
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4457888899999999998754
No 16
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=64.28 E-value=3.1 Score=35.08 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=10.9
Q ss_pred HHHhheeeeeeCCCCEE
Q 020687 145 LFSLILWGASKSQKPKI 161 (322)
Q Consensus 145 l~~LIlWlv~RP~kP~f 161 (322)
+++.++|+.+||++=+.
T Consensus 11 v~~~i~yf~iRPQkKr~ 27 (113)
T PRK06531 11 VMLGLIFFMQRQQKKQA 27 (113)
T ss_pred HHHHHHHheechHHHHH
Confidence 33444577899987653
No 17
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=62.60 E-value=4.7 Score=26.96 Aligned_cols=15 Identities=27% Similarity=0.844 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhheee
Q 020687 138 GFFLLFSLFSLILWG 152 (322)
Q Consensus 138 ~~vlL~gl~~LIlWl 152 (322)
+.+.++++++||+|+
T Consensus 10 ~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 10 GVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHH
Confidence 466677788888886
No 18
>PHA02898 virion envelope protein; Provisional
Probab=58.36 E-value=6.2 Score=32.00 Aligned_cols=30 Identities=10% Similarity=0.316 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHhheee-eeeCCCCE
Q 020687 131 YFLAFVLGFFLLFSLFSLILWG-ASKSQKPK 160 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LIlWl-v~RP~kP~ 160 (322)
.+.+|+++.++++|++.+-.|. -..|.+|.
T Consensus 48 Sii~FIlgivl~lG~~ifs~y~r~C~~~~~~ 78 (92)
T PHA02898 48 SIISFILAIILILGIIFFKGYNMFCGGNTTD 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 6899999999999999999998 77787765
No 19
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=58.31 E-value=5.5 Score=30.68 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhheeeeeeCCC
Q 020687 136 VLGFFLLFSLFSLILWGASKSQK 158 (322)
Q Consensus 136 ll~~vlL~gl~~LIlWlv~RP~k 158 (322)
++.+++.+++++||+|++++-++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 33477888999999999987554
No 20
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=57.38 E-value=9.9 Score=28.30 Aligned_cols=19 Identities=5% Similarity=0.303 Sum_probs=13.8
Q ss_pred HHHHHHHHHhheeeeeeCC
Q 020687 139 FFLLFSLFSLILWGASKSQ 157 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP~ 157 (322)
+++++.++++++|+..||+
T Consensus 38 l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 38 LAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHHhheeEEeccCC
Confidence 3444556678999999995
No 21
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=56.55 E-value=7.6 Score=27.79 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhheeeeeeCCC
Q 020687 135 FVLGFFLLFSLFSLILWGASKSQK 158 (322)
Q Consensus 135 ~ll~~vlL~gl~~LIlWlv~RP~k 158 (322)
=..++++++++++.|+|.+++|+.
T Consensus 12 ~~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 12 DSWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 334566677778888888888853
No 22
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=52.37 E-value=65 Score=27.49 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=38.8
Q ss_pred HHHhheeeeeeC--CCCEEEEeeeEEEeEEeccCCCCCCccceeEEEEEEEEEEEecCCCeEEEEEcCceEEEEEcceee
Q 020687 145 LFSLILWGASKS--QKPKITMKSINFEHFKIQAGSDFSGVATDMITVNSTVKMIYRNTGTFFGVHVTSNPLDLSYSEITI 222 (322)
Q Consensus 145 l~~LIlWlv~RP--~kP~fsV~s~~v~~fnv~~gsd~sgvpt~~Ls~n~tv~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~l 222 (322)
++.+++|.++.. ++++.++.+..- +..++ ...+..+++|-+++ -|..=...+.+...+...
T Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~--l~~~~--------------~~~v~g~V~N~g~~-~i~~c~i~~~l~~~~~~~ 94 (149)
T PF09624_consen 32 LIPFFGYYWLDKYLKKIELTLTSQKR--LQYSE--------------SFYVDGTVTNTGKF-TIKKCKITVKLYNDKQVS 94 (149)
T ss_pred HHHHHHHHHHhhhcCCceEEEeeeee--eeecc--------------EEEEEEEEEECCCC-EeeEEEEEEEEEeCCCcc
Confidence 344555555555 666666544433 33322 23345677888776 565555666666655555
Q ss_pred ecCCCCccccc
Q 020687 223 ASGAIRKFYQS 233 (322)
Q Consensus 223 asg~lp~FYQ~ 233 (322)
.+....-+||.
T Consensus 95 ~n~~~~~~~~~ 105 (149)
T PF09624_consen 95 GNKFKEIFYQQ 105 (149)
T ss_pred Cchhhhhhccc
Confidence 55444444443
No 23
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=52.04 E-value=39 Score=33.81 Aligned_cols=18 Identities=33% Similarity=0.779 Sum_probs=14.0
Q ss_pred CceEEEEEcceeeecCCCCcccccCC
Q 020687 210 SNPLDLSYSEITIASGAIRKFYQSRK 235 (322)
Q Consensus 210 ~~~v~l~Y~~~~lasg~lp~FYQ~~k 235 (322)
..+|+++| +|..|||-|+
T Consensus 114 k~pVy~YY--------~L~nfyQNhR 131 (351)
T KOG2952|consen 114 KGPVYLYY--------ELTNFYQNHR 131 (351)
T ss_pred CCCEEEEE--------ehhHHHHHHH
Confidence 56788988 5888998664
No 24
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=52.00 E-value=16 Score=34.95 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=15.1
Q ss_pred EEEEEEEEEEecCCCeEEEEE
Q 020687 188 TVNSTVKMIYRNTGTFFGVHV 208 (322)
Q Consensus 188 s~n~tv~v~~rNPN~~~GI~Y 208 (322)
...=+|++++||||..+.=+.
T Consensus 107 ~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 107 QSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred EeccCeeEEccCCCCceeeeE
Confidence 333458889999998876554
No 25
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=51.11 E-value=19 Score=32.70 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHhheeeeeeCCCC
Q 020687 132 FLAFVLGFFLLFSLFSLILWGASKSQKP 159 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWlv~RP~kP 159 (322)
-++|++.+.+++++++.++..+++|..|
T Consensus 4 K~aF~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 4 KWAFLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHHHHhheeeEEEccCCC
Confidence 4667666777888888899999999976
No 26
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=50.17 E-value=72 Score=26.51 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=15.4
Q ss_pred HHHHhheeeeee-CCCCEEEEeeeEEEeEEecc
Q 020687 144 SLFSLILWGASK-SQKPKITMKSINFEHFKIQA 175 (322)
Q Consensus 144 gl~~LIlWlv~R-P~kP~fsV~s~~v~~fnv~~ 175 (322)
.+++++.|+.++ -..|.++ .....|.+.+
T Consensus 16 v~~~~~~w~~~~~~~~~~v~---~~~~gf~vv~ 45 (112)
T PF14155_consen 16 VAGAVVAWFGYSQFGSPPVS---AEVIGFEVVD 45 (112)
T ss_pred HHHHHHhHhhhhhccCCCce---EEEEEEEECC
Confidence 334455566665 4555554 4445566654
No 27
>PRK14762 membrane protein; Provisional
Probab=46.13 E-value=26 Score=22.08 Aligned_cols=18 Identities=22% Similarity=0.809 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhe
Q 020687 133 LAFVLGFFLLFSLFSLIL 150 (322)
Q Consensus 133 ~~~ll~~vlL~gl~~LIl 150 (322)
++|++++++++|++-+|+
T Consensus 10 iifligllvvtgvfklif 27 (27)
T PRK14762 10 IIFLIGLLVVTGVFKMIF 27 (27)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 455556666667666553
No 28
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=45.46 E-value=16 Score=32.52 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=17.1
Q ss_pred HHHHHHHHhheeeeeeCCCCEE
Q 020687 140 FLLFSLFSLILWGASKSQKPKI 161 (322)
Q Consensus 140 vlL~gl~~LIlWlv~RP~kP~f 161 (322)
.||+++++||+|+..|+++=.|
T Consensus 61 ~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHHhheeEEEecccCcc
Confidence 4456778889999999998554
No 29
>PRK05529 cell division protein FtsQ; Provisional
Probab=45.11 E-value=34 Score=32.31 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=30.0
Q ss_pred CCEEEEeeeEEEeEEeccCCC---CCC--ccceeEEEEE--------------EEEEEEecCCCeEEEEEcC
Q 020687 158 KPKITMKSINFEHFKIQAGSD---FSG--VATDMITVNS--------------TVKMIYRNTGTFFGVHVTS 210 (322)
Q Consensus 158 kP~fsV~s~~v~~fnv~~gsd---~sg--vpt~~Ls~n~--------------tv~v~~rNPN~~~GI~Y~~ 210 (322)
.|.|.|+.+.|++-......+ ..+ ..++++.++. ++++.-..||+. -|++.+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~tl-~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGTI-VVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCEE-EEEEEE
Confidence 699999999998643210000 000 0122333332 467778899984 788865
No 30
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.19 E-value=11 Score=32.22 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=11.9
Q ss_pred HHHHHHHHHhheeeeeeC-CCCEEEEee
Q 020687 139 FFLLFSLFSLILWGASKS-QKPKITMKS 165 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP-~kP~fsV~s 165 (322)
.+-++|+++||+|++.|= +|+...++.
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 333566777788888755 666666655
No 31
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.06 E-value=15 Score=32.70 Aligned_cols=28 Identities=14% Similarity=0.408 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHhheeeeeeCCC
Q 020687 131 YFLAFVLGFFLLFSLFSLILWGASKSQK 158 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LIlWlv~RP~k 158 (322)
++.++++.|+++.+.+++++|.+..|..
T Consensus 8 ~i~ii~viflai~~s~~~~~~~s~~P~~ 35 (161)
T COG5353 8 IIIIILVIFLAIILSIALFFWKSMKPYH 35 (161)
T ss_pred eehhHHHHHHHHHHHHHHHHhHhcCccc
Confidence 4555556677788889999999999864
No 32
>PHA03048 IMV membrane protein; Provisional
Probab=43.69 E-value=16 Score=29.76 Aligned_cols=31 Identities=29% Similarity=0.574 Sum_probs=25.4
Q ss_pred eee-hhHHHHHHHHHHHHHHHhheee-eeeCCC
Q 020687 128 RRC-YFLAFVLGFFLLFSLFSLILWG-ASKSQK 158 (322)
Q Consensus 128 r~c-~~~~~ll~~vlL~gl~~LIlWl-v~RP~k 158 (322)
||. ++.+|+++.++++|++++-.|. -..|++
T Consensus 43 wRalsii~FIlgivl~lG~~ifsmy~r~C~~~~ 75 (93)
T PHA03048 43 WRALSGIAFVLGIVMTIGMLIYSMWGRYCTPSK 75 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 444 7899999999999999999999 556653
No 33
>PHA02902 putative IMV membrane protein; Provisional
Probab=42.01 E-value=10 Score=29.08 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=15.7
Q ss_pred HHHHHHHHHhheeeeeeCC
Q 020687 139 FFLLFSLFSLILWGASKSQ 157 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP~ 157 (322)
+++++.++||++|.++|-.
T Consensus 9 ~~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 9 LAVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5667788999999999865
No 34
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.20 E-value=16 Score=36.63 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=9.9
Q ss_pred Ccccccccccccccccc
Q 020687 102 KRWNKECDVIEEEGLLE 118 (322)
Q Consensus 102 ~~w~~~~~~~~~~~~~~ 118 (322)
+.|+-+|.+.+++...|
T Consensus 158 kkk~~~l~i~~dQ~F~d 174 (372)
T KOG2927|consen 158 KKKKFELEIHDDQAFQD 174 (372)
T ss_pred ccCccceeeccchhhcc
Confidence 55665566655555554
No 35
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=39.54 E-value=23 Score=29.63 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=18.7
Q ss_pred eeehhHHHHHHHHHHHHHHHhheeeeeeCCCCEEE
Q 020687 128 RRCYFLAFVLGFFLLFSLFSLILWGASKSQKPKIT 162 (322)
Q Consensus 128 r~c~~~~~ll~~vlL~gl~~LIlWlv~RP~kP~fs 162 (322)
|+|+...+++ ++.++.+-+.|.|++.++..|.+.
T Consensus 1 ~~~~l~~~~~-~~~~~~~~~~vt~~l~~~~~p~iV 34 (111)
T PF09677_consen 1 RRRWLVIVLL-AVAALLLSAWVTWLLASQPQPRIV 34 (111)
T ss_pred CchHHHHHHH-HHHHHHHHHHHHHHHHhcCCCceE
Confidence 4564444443 333444445666777777777543
No 36
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=39.53 E-value=72 Score=26.52 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=16.8
Q ss_pred EEEEEEEEEecCCCeEEEEEcCceEE
Q 020687 189 VNSTVKMIYRNTGTFFGVHVTSNPLD 214 (322)
Q Consensus 189 ~n~tv~v~~rNPN~~~GI~Y~~~~v~ 214 (322)
.|+..++++.||.. ++|......++
T Consensus 100 ~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 100 INLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 45666677899988 47766555443
No 37
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=39.50 E-value=12 Score=31.50 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=11.6
Q ss_pred HHHHHHhheeeeeeCCCCE
Q 020687 142 LFSLFSLILWGASKSQKPK 160 (322)
Q Consensus 142 L~gl~~LIlWlv~RP~kP~ 160 (322)
++.++++++|+.+||++=+
T Consensus 10 lv~i~~i~yF~~iRPQkKr 28 (109)
T PRK05886 10 FLLIMGGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHHHHHHccHHHHH
Confidence 3334445566778997654
No 38
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=38.74 E-value=35 Score=28.83 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhheeeeeeCCCCEEEE
Q 020687 133 LAFVLGFFLLFSLFSLILWGASKSQKPKITM 163 (322)
Q Consensus 133 ~~~ll~~vlL~gl~~LIlWlv~RP~kP~fsV 163 (322)
+..+.+++.++.+.+++.|++.|=..|.+.+
T Consensus 6 l~~~~~~~~~~~l~~~~s~~v~~~~~P~iV~ 36 (112)
T TIGR02744 6 LWMIPGCLAMVVLSALVSYGIVRLNSPVTVA 36 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCeEEE
Confidence 3444445666667788999999977776553
No 39
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=38.27 E-value=21 Score=31.81 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=12.0
Q ss_pred HHHHHHHhheeeeeeCCC
Q 020687 141 LLFSLFSLILWGASKSQK 158 (322)
Q Consensus 141 lL~gl~~LIlWlv~RP~k 158 (322)
+|+++++.++|+.+||-+
T Consensus 13 ~l~~~~~y~~W~~~rpV~ 30 (157)
T PF06092_consen 13 FLLACILYFLWLTLRPVE 30 (157)
T ss_pred HHHHHHHHhhhhccCCeE
Confidence 334444488999999943
No 40
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=38.19 E-value=16 Score=35.88 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=16.9
Q ss_pred HHHHHHHHHhheeee---eeCCCCEEE
Q 020687 139 FFLLFSLFSLILWGA---SKSQKPKIT 162 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv---~RP~kP~fs 162 (322)
.++|++++++.+|.. +-|++|++.
T Consensus 55 Y~~la~lf~~~~~~~~~tidp~~P~~~ 81 (300)
T KOG3927|consen 55 YGVLAALFAGCMWFMLQTIDPKVPKYK 81 (300)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 445666666666665 469999998
No 41
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=37.81 E-value=76 Score=26.95 Aligned_cols=20 Identities=5% Similarity=0.355 Sum_probs=9.1
Q ss_pred CceEEEEEcceeeecCCCCcccccCC
Q 020687 210 SNPLDLSYSEITIASGAIRKFYQSRK 235 (322)
Q Consensus 210 ~~~v~l~Y~~~~lasg~lp~FYQ~~k 235 (322)
..++.|.|.+. +|..|+...
T Consensus 81 ~~~i~V~Y~G~------~Pd~F~eg~ 100 (131)
T PF03100_consen 81 GKEIPVVYTGP------LPDLFREGQ 100 (131)
T ss_dssp S-EEEEEEES--------CTT--TTS
T ss_pred CcEEEEEECCC------CCccccCCC
Confidence 35567777654 666665533
No 42
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=37.29 E-value=13 Score=29.93 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=15.5
Q ss_pred HHHHHHHHHhheeeeeeCC
Q 020687 139 FFLLFSLFSLILWGASKSQ 157 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP~ 157 (322)
+++++.|+|||+|.+||-.
T Consensus 9 ~~V~V~IVclliya~YRR~ 27 (92)
T PHA02681 9 TVIVISIVCYIVIMMYRRS 27 (92)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3677789999999999854
No 43
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=36.22 E-value=21 Score=25.77 Aligned_cols=23 Identities=30% Similarity=0.801 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHhhe--eeee
Q 020687 132 FLAFVLGFFLLFSLFSLIL--WGAS 154 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIl--Wlv~ 154 (322)
++.+.++|++.+.++++++ |.++
T Consensus 8 ~L~~~F~~lIC~Fl~~~~~F~~F~~ 32 (54)
T PF06716_consen 8 YLLLAFGFLICLFLFCLVVFIWFVY 32 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777654 5444
No 44
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=34.52 E-value=25 Score=24.24 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=6.6
Q ss_pred HHHHHHhheeeee
Q 020687 142 LFSLFSLILWGAS 154 (322)
Q Consensus 142 L~gl~~LIlWlv~ 154 (322)
++-+...|+|.++
T Consensus 20 lv~imliif~f~l 32 (43)
T PF11395_consen 20 LVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3334445667653
No 45
>PTZ00200 cysteine proteinase; Provisional
Probab=34.47 E-value=35 Score=35.13 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHhheeeeee
Q 020687 131 YFLAFVLGFFLLFSLFSLILWGASK 155 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LIlWlv~R 155 (322)
.++++++.++|++++.+++.+++.|
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (448)
T PTZ00200 45 IIISFLVFLFLAIGGSIVSYVLVSK 69 (448)
T ss_pred ehHHHHHHHHHHHHhheEEEEEEEe
Confidence 4455554455555666688888888
No 46
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.57 E-value=23 Score=34.20 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhheeeeee
Q 020687 134 AFVLGFFLLFSLFSLILWGASK 155 (322)
Q Consensus 134 ~~ll~~vlL~gl~~LIlWlv~R 155 (322)
++++.++++..++++|+|++.+
T Consensus 247 ~ll~v~~~v~lii~l~i~~~~~ 268 (269)
T KOG0811|consen 247 ILLLVGGPVGLIIGLIIAGIAA 268 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHhhc
Confidence 3333344445566778888765
No 47
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.03 E-value=19 Score=28.30 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhheeeeee
Q 020687 135 FVLGFFLLFSLFSLILWGASK 155 (322)
Q Consensus 135 ~ll~~vlL~gl~~LIlWlv~R 155 (322)
|++..+++|.+|+..+||++.
T Consensus 5 fl~~plivf~ifVap~WL~lH 25 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPIWLILH 25 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666677777653
No 48
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=32.89 E-value=57 Score=26.64 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHhheeeeeeCCCCE
Q 020687 132 FLAFVLGFFLLFSLFSLILWGASKSQKPK 160 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWlv~RP~kP~ 160 (322)
++..+++|+.++-++.+|.|.+.-=.+++
T Consensus 64 ili~lls~v~IlVily~IyYFVILRer~~ 92 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFVILRERQK 92 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEEEEecccc
Confidence 34444455555555556666665444433
No 49
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.73 E-value=1.5e+02 Score=26.00 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhheeee
Q 020687 136 VLGFFLLFSLFSLILWGA 153 (322)
Q Consensus 136 ll~~vlL~gl~~LIlWlv 153 (322)
+++++++.+++.|++|..
T Consensus 13 ~~~~~~~~~~~~L~~~a~ 30 (148)
T PRK13254 13 LGALAALGLAVALVLYAL 30 (148)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333555555666666644
No 50
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=32.59 E-value=14 Score=32.84 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=24.7
Q ss_pred HHHHHHHHhheeeeeeCCCCEEEEeeeEEEeEEe
Q 020687 140 FLLFSLFSLILWGASKSQKPKITMKSINFEHFKI 173 (322)
Q Consensus 140 vlL~gl~~LIlWlv~RP~kP~fsV~s~~v~~fnv 173 (322)
|+++.+++||.|...|=+|--.-++...++=.|.
T Consensus 40 Vliiiiivli~lcssRKkKaaAAi~eediQfinp 73 (189)
T PF05568_consen 40 VLIIIIIVLIYLCSSRKKKAAAAIEEEDIQFINP 73 (189)
T ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhhhcccccCc
Confidence 3445567889999999988877777666665555
No 51
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=32.25 E-value=28 Score=33.47 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=12.5
Q ss_pred eEEEEEEEEEEEecCCCe
Q 020687 186 MITVNSTVKMIYRNTGTF 203 (322)
Q Consensus 186 ~Ls~n~tv~v~~rNPN~~ 203 (322)
.++.+-.|.+.++|.|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 344455677888998876
No 52
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=32.15 E-value=25 Score=29.50 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=11.5
Q ss_pred HHHHHHHhheeeeeeCCC--CEEE
Q 020687 141 LLFSLFSLILWGASKSQK--PKIT 162 (322)
Q Consensus 141 lL~gl~~LIlWlv~RP~k--P~fs 162 (322)
|+++++ ||+||++-=++ |-|.
T Consensus 5 ilia~~-li~~Lv~~~r~~~~vf~ 27 (108)
T PF12321_consen 5 ILIAAA-LIFWLVFVDRRGLPVFE 27 (108)
T ss_pred HHHHHH-HHHHHHHccccCceEEE
Confidence 334444 77787754443 5554
No 53
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=31.46 E-value=21 Score=25.93 Aligned_cols=25 Identities=16% Similarity=0.386 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhheeeeeeCCC
Q 020687 134 AFVLGFFLLFSLFSLILWGASKSQK 158 (322)
Q Consensus 134 ~~ll~~vlL~gl~~LIlWlv~RP~k 158 (322)
.+++.+++++|+..+.+|-++|-+-
T Consensus 4 ~~iV~i~iv~~lLg~~I~~~~K~yg 28 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSICTTLKAYG 28 (50)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444566677777777777766543
No 54
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.39 E-value=41 Score=30.88 Aligned_cols=36 Identities=14% Similarity=0.016 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhheeeeeeCCCCEEEEeeeEE
Q 020687 133 LAFVLGFFLLFSLFSLILWGASKSQKPKITMKSINF 168 (322)
Q Consensus 133 ~~~ll~~vlL~gl~~LIlWlv~RP~kP~fsV~s~~v 168 (322)
|+|++.+.+++.++++|.-.++.|+.|...+.+.+=
T Consensus 13 w~f~iLLAln~l~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 13 WLFFILLALNTLLAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHHHHhheeeccCCCCCchhhccCc
Confidence 333333444555557788888999998777766644
No 55
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.31 E-value=43 Score=31.39 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=8.4
Q ss_pred HHHHHHHHHhheeeeee
Q 020687 139 FFLLFSLFSLILWGASK 155 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~R 155 (322)
++++++++++++|++.|
T Consensus 246 ~~~~~~~~~~~~~~~~R 262 (262)
T PF14257_consen 246 WLPLILIIGLLVRFVRR 262 (262)
T ss_pred HHHHHHHHHHHHheEeC
Confidence 33444455555555544
No 56
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=31.02 E-value=39 Score=31.57 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=7.7
Q ss_pred HHHhheeeeeeC
Q 020687 145 LFSLILWGASKS 156 (322)
Q Consensus 145 l~~LIlWlv~RP 156 (322)
+++.+.|+.+||
T Consensus 237 ~~Ia~aW~~yRP 248 (248)
T PF07787_consen 237 LTIALAWLFYRP 248 (248)
T ss_pred HHHHHhheeeCc
Confidence 334466888877
No 57
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=30.73 E-value=54 Score=31.07 Aligned_cols=79 Identities=14% Similarity=0.259 Sum_probs=47.8
Q ss_pred HHHHHHHHHhheeeeeeCCCCEEEEeeeEEEeEEeccCCC---CCCc--cceeEEEEE--------------EEEEEEec
Q 020687 139 FFLLFSLFSLILWGASKSQKPKITMKSINFEHFKIQAGSD---FSGV--ATDMITVNS--------------TVKMIYRN 199 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP~kP~fsV~s~~v~~fnv~~gsd---~sgv--pt~~Ls~n~--------------tv~v~~rN 199 (322)
+++++++.++++|...-+..|-|.++.+.|++=+....-+ ..|. .+.+++.+. ++.++-.=
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn~~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~~ 117 (269)
T COG1589 38 YLVLLLLVLVVLWVLILLSLPYFPIRKVSVSGNNQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQF 117 (269)
T ss_pred HHHHHHHHHHHHheehhhhcCCccceEEEEecCcccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEEeC
Confidence 4455666778899999999999999999998743322000 0011 123344332 34555566
Q ss_pred CCCeEEEEEcCceEEEEEc
Q 020687 200 TGTFFGVHVTSNPLDLSYS 218 (322)
Q Consensus 200 PN~~~GI~Y~~~~v~l~Y~ 218 (322)
||+. -|++.+=..-+++.
T Consensus 118 Pntv-~I~v~Er~piA~w~ 135 (269)
T COG1589 118 PNTL-EIEVVEREPIAYWQ 135 (269)
T ss_pred CCcE-EEEEEEeeeEEEEe
Confidence 8884 77777655444443
No 58
>PHA02831 EEV host range protein; Provisional
Probab=29.99 E-value=53 Score=31.65 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhee
Q 020687 137 LGFFLLFSLFSLILW 151 (322)
Q Consensus 137 l~~vlL~gl~~LIlW 151 (322)
+.||+++|+++|++=
T Consensus 240 ~~~~~~~~~~~~~~~ 254 (268)
T PHA02831 240 ICFIFVLGLIALFLS 254 (268)
T ss_pred HHHHHHHHHHHHhhc
Confidence 346777777776653
No 59
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=29.60 E-value=29 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.590 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHhheee-eeeC
Q 020687 131 YFLAFVLGFFLLFSLFSLILWG-ASKS 156 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LIlWl-v~RP 156 (322)
.+++|++++++++|+++.=.|. -.+|
T Consensus 48 Sii~FI~giil~lG~~i~s~ygr~C~~ 74 (92)
T PF05767_consen 48 SIICFILGIILTLGIVIFSMYGRYCRP 74 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 6899999999999999999994 3455
No 60
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=29.50 E-value=45 Score=26.46 Aligned_cols=14 Identities=29% Similarity=0.842 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhee
Q 020687 138 GFFLLFSLFSLILW 151 (322)
Q Consensus 138 ~~vlL~gl~~LIlW 151 (322)
+|++++++++.|+|
T Consensus 76 ~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 76 AFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHHHhh
Confidence 34445555555555
No 61
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=29.24 E-value=33 Score=27.41 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=12.0
Q ss_pred HhheeeeeeCCCCEEEEeeeEEEeEEeccCCCCCCccceeEEEEEEEEEEEecCCCe
Q 020687 147 SLILWGASKSQKPKITMKSINFEHFKIQAGSDFSGVATDMITVNSTVKMIYRNTGTF 203 (322)
Q Consensus 147 ~LIlWlv~RP~kP~fsV~s~~v~~fnv~~gsd~sgvpt~~Ls~n~tv~v~~rNPN~~ 203 (322)
++++|+........-..-.+++.++.++.. +-.+..+-.++++++|.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~v~I~~~~~~f~P~-------~i~v~~G~~v~l~~~N~~~~ 55 (104)
T PF13473_consen 6 AAALALSSSASAAAAQTVTITVTDFGFSPS-------TITVKAGQPVTLTFTNNDSR 55 (104)
T ss_dssp ------------------------EEEES--------EEEEETTCEEEEEEEE-SSS
T ss_pred cccccccccccccccccccccccCCeEecC-------EEEEcCCCeEEEEEEECCCC
Confidence 344455555555555555666666666532 11222222466777787654
No 62
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=28.70 E-value=31 Score=24.23 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhee
Q 020687 133 LAFVLGFFLLFSLFSLILW 151 (322)
Q Consensus 133 ~~~ll~~vlL~gl~~LIlW 151 (322)
+-|++.+++..|++++++|
T Consensus 12 lVF~lVglv~i~iva~~iY 30 (43)
T PF08114_consen 12 LVFCLVGLVGIGIVALFIY 30 (43)
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 3344445555666666664
No 63
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=28.57 E-value=31 Score=21.59 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhheeeeeeCCC
Q 020687 138 GFFLLFSLFSLILWGASKSQK 158 (322)
Q Consensus 138 ~~vlL~gl~~LIlWlv~RP~k 158 (322)
+.++.+++++-.+|..+||.|
T Consensus 4 ~~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 4 GGIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHHhCccc
Confidence 355556666667777778865
No 64
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=28.23 E-value=44 Score=31.22 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhheeeeeeCCCCEE
Q 020687 138 GFFLLFSLFSLILWGASKSQKPKI 161 (322)
Q Consensus 138 ~~vlL~gl~~LIlWlv~RP~kP~f 161 (322)
++|+|+|..+..+|-++||++...
T Consensus 167 llv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 167 LLVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHHhhcceEEEEEEeccccccc
Confidence 345555556667777889987655
No 65
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=27.88 E-value=77 Score=27.04 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=20.3
Q ss_pred eee-hhHHHHHHHHHHHHHHHhheeeeeeCC
Q 020687 128 RRC-YFLAFVLGFFLLFSLFSLILWGASKSQ 157 (322)
Q Consensus 128 r~c-~~~~~ll~~vlL~gl~~LIlWlv~RP~ 157 (322)
|.. ++++.+..++++++++..+++....|+
T Consensus 28 riinliiG~vT~l~VLvtii~afvf~~~~p~ 58 (118)
T PF10856_consen 28 RIINLIIGAVTSLFVLVTIISAFVFPQDPPK 58 (118)
T ss_pred EEEEeehHHHHHHHHHHHHhheEEecCCCCC
Confidence 444 778888778888877766666655444
No 66
>PF14828 Amnionless: Amnionless
Probab=27.87 E-value=35 Score=35.01 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHhheeeeeeCCCCEE
Q 020687 132 FLAFVLGFFLLFSLFSLILWGASKSQKPKI 161 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWlv~RP~kP~f 161 (322)
+++++++.+++++++++++|+.+.|..|.+
T Consensus 340 v~~~vl~~Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 340 VVGIVLGCLLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred eeeehHHHHHHHHHHHHhheEEeccccccc
Confidence 345555566677777777777766666654
No 67
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=27.22 E-value=21 Score=29.51 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 020687 131 YFLAFVLGFFLLFSLFSLI 149 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LI 149 (322)
+++++++++++|+.+++||
T Consensus 30 ~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 30 CLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp -------------------
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455555677777777777
No 68
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=27.01 E-value=43 Score=27.20 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=7.6
Q ss_pred HHHHHHHHhheeeeee
Q 020687 140 FLLFSLFSLILWGASK 155 (322)
Q Consensus 140 vlL~gl~~LIlWlv~R 155 (322)
+++.+|+++++|+.++
T Consensus 77 ~~v~~lv~~l~w~f~~ 92 (96)
T PTZ00382 77 AVVGGLVGFLCWWFVC 92 (96)
T ss_pred hHHHHHHHHHhheeEE
Confidence 3344455455555443
No 69
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=26.70 E-value=64 Score=24.79 Aligned_cols=16 Identities=6% Similarity=0.142 Sum_probs=12.6
Q ss_pred HHHHHHhheeeeeeCC
Q 020687 142 LFSLFSLILWGASKSQ 157 (322)
Q Consensus 142 L~gl~~LIlWlv~RP~ 157 (322)
+.+.+..+.|++.+|.
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4455677899999998
No 70
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=26.42 E-value=52 Score=35.62 Aligned_cols=26 Identities=27% Similarity=0.657 Sum_probs=19.7
Q ss_pred ceeehhHHHHHHHHHHHHHHHhheee
Q 020687 127 PRRCYFLAFVLGFFLLFSLFSLILWG 152 (322)
Q Consensus 127 ~r~c~~~~~ll~~vlL~gl~~LIlWl 152 (322)
+.+.+|.+|++.|++++.+++++||=
T Consensus 389 ~t~~~~~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 389 PTAILIIIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777788888899997
No 71
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=26.39 E-value=73 Score=21.74 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=14.1
Q ss_pred HHHHHHHHHhheeeeeeCC
Q 020687 139 FFLLFSLFSLILWGASKSQ 157 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP~ 157 (322)
+++++-++..++|++++++
T Consensus 28 ~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 28 VILFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHHHhheEEEeCC
Confidence 4455778888999988764
No 72
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=26.13 E-value=32 Score=27.28 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=9.4
Q ss_pred HHHhheeeeeeCCCCE
Q 020687 145 LFSLILWGASKSQKPK 160 (322)
Q Consensus 145 l~~LIlWlv~RP~kP~ 160 (322)
++++..|+..||++=+
T Consensus 12 ~~~i~yf~~~rpqkK~ 27 (84)
T TIGR00739 12 IFLIFYFLIIRPQRKR 27 (84)
T ss_pred HHHHHHHheechHHHH
Confidence 3444455777896544
No 73
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=25.40 E-value=74 Score=32.32 Aligned_cols=32 Identities=6% Similarity=0.266 Sum_probs=21.4
Q ss_pred HHHHHHHHHhheeeeeeC-CCCEE-EEeeeEEEe
Q 020687 139 FFLLFSLFSLILWGASKS-QKPKI-TMKSINFEH 170 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP-~kP~f-sV~s~~v~~ 170 (322)
+||++|.++..+....|| .--++ .|+++-.+.
T Consensus 312 ~lL~ig~~~gFv~AttKpL~~v~v~~I~NVlaS~ 345 (387)
T PF12751_consen 312 LLLVIGFAIGFVFATTKPLTDVQVVSIQNVLASE 345 (387)
T ss_pred HHHHHHHHHHhhhhcCcccccceEEEeeeeeecc
Confidence 345556666667777888 55665 777777665
No 74
>PHA02642 C-type lectin-like protein; Provisional
Probab=25.10 E-value=55 Score=30.62 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=11.6
Q ss_pred eeehhHHHHH-HHHHHHHHHHhheee
Q 020687 128 RRCYFLAFVL-GFFLLFSLFSLILWG 152 (322)
Q Consensus 128 r~c~~~~~ll-~~vlL~gl~~LIlWl 152 (322)
-||++++++| +..++..++.|++|-
T Consensus 51 ~~c~~~i~~l~~~~~~~l~~~~~~~~ 76 (216)
T PHA02642 51 YCCIITICILITINLVPIIILMAFKS 76 (216)
T ss_pred eeeeehHHHHHHHHHHHHHHHHHhcc
Confidence 4676655544 333333333445554
No 75
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=23.70 E-value=8.3 Score=30.78 Aligned_cols=6 Identities=0% Similarity=0.517 Sum_probs=0.8
Q ss_pred hhHHHH
Q 020687 131 YFLAFV 136 (322)
Q Consensus 131 ~~~~~l 136 (322)
+|++||
T Consensus 67 wlwLli 72 (81)
T PF14812_consen 67 WLWLLI 72 (81)
T ss_dssp ----TT
T ss_pred hHHHHH
Confidence 444443
No 76
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.67 E-value=37 Score=33.20 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=12.2
Q ss_pred HHHHHHHHHhheeeeeeC
Q 020687 139 FFLLFSLFSLILWGASKS 156 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP 156 (322)
.||++.++.+|+||++|=
T Consensus 264 aIliIVLIMvIIYLILRY 281 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILRY 281 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455677888888873
No 77
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=23.15 E-value=63 Score=28.60 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=10.8
Q ss_pred EEEEcCceEEEEEccee
Q 020687 205 GVHVTSNPLDLSYSEIT 221 (322)
Q Consensus 205 GI~Y~~~~v~l~Y~~~~ 221 (322)
+.+|=...+.+.+.+..
T Consensus 85 ~~ryLkv~i~l~~~d~~ 101 (170)
T PRK05696 85 RDRLVQIKVQLMVRGSD 101 (170)
T ss_pred CceEEEEEEEEEECCHH
Confidence 45676777777666543
No 78
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=23.04 E-value=32 Score=28.26 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=9.1
Q ss_pred HHhheeeeeeCCCCE
Q 020687 146 FSLILWGASKSQKPK 160 (322)
Q Consensus 146 ~~LIlWlv~RP~kP~ 160 (322)
+++..++++||++=+
T Consensus 19 ~~ifyFli~RPQrKr 33 (97)
T COG1862 19 FAIFYFLIIRPQRKR 33 (97)
T ss_pred HHHHHHhhcCHHHHH
Confidence 333444589997654
No 79
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.67 E-value=37 Score=26.64 Aligned_cols=20 Identities=20% Similarity=0.374 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhheeeeee
Q 020687 136 VLGFFLLFSLFSLILWGASK 155 (322)
Q Consensus 136 ll~~vlL~gl~~LIlWlv~R 155 (322)
+++-+++|.+|+..+|++++
T Consensus 6 l~~Pliif~ifVap~wl~lH 25 (75)
T TIGR02976 6 LAIPLIIFVIFVAPLWLILH 25 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555666667777653
No 80
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=22.60 E-value=60 Score=24.50 Aligned_cols=7 Identities=29% Similarity=0.695 Sum_probs=3.1
Q ss_pred HHhheee
Q 020687 146 FSLILWG 152 (322)
Q Consensus 146 ~~LIlWl 152 (322)
.+|+.|+
T Consensus 53 G~~~~~~ 59 (60)
T PF06072_consen 53 GALVAWH 59 (60)
T ss_pred HHHhhcc
Confidence 3444454
No 81
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=22.43 E-value=93 Score=25.85 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHhheeee
Q 020687 131 YFLAFVLGFFLLFSLFSLILWGA 153 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LIlWlv 153 (322)
+||+-+.+.++.+|+++.+++.+
T Consensus 20 IfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 20 IFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777778888888888877766
No 82
>PF14927 Neurensin: Neurensin
Probab=22.35 E-value=1.1e+02 Score=26.70 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=15.1
Q ss_pred HHHHHHHH-HHHHHHhheeeeeeCCCCEEE
Q 020687 134 AFVLGFFL-LFSLFSLILWGASKSQKPKIT 162 (322)
Q Consensus 134 ~~ll~~vl-L~gl~~LIlWlv~RP~kP~fs 162 (322)
+|++++++ ++|+++|++ +-.=|++++..
T Consensus 47 ~~i~g~l~Ll~Gi~~l~v-gY~vP~~~e~~ 75 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTV-GYLVPPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHh-hcccCCcceec
Confidence 55555554 555655543 22347666655
No 83
>PF06835 LptC: Lipopolysaccharide-assembly, LptC-related; InterPro: IPR010664 This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [].; PDB: 3MY2_A.
Probab=22.33 E-value=2.5e+02 Score=23.52 Aligned_cols=7 Identities=0% Similarity=-0.282 Sum_probs=3.4
Q ss_pred EecCCCe
Q 020687 197 YRNTGTF 203 (322)
Q Consensus 197 ~rNPN~~ 203 (322)
.++++..
T Consensus 61 ~~~~~~~ 67 (176)
T PF06835_consen 61 EHYPNSD 67 (176)
T ss_dssp EEETTTT
T ss_pred EEecCCC
Confidence 3455544
No 84
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=22.32 E-value=96 Score=27.66 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=14.7
Q ss_pred HHHHHHHHHhheeeeeeCCCCEEEE
Q 020687 139 FFLLFSLFSLILWGASKSQKPKITM 163 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP~kP~fsV 163 (322)
|+||+..++..+|-.-+...-+|++
T Consensus 19 l~lLl~cgiGcvwhwkhr~~~~ftL 43 (158)
T PF11770_consen 19 LLLLLLCGIGCVWHWKHRDSTRFTL 43 (158)
T ss_pred HHHHHHHhcceEEEeeccCccccch
Confidence 4455555556777766655555554
No 85
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=22.22 E-value=25 Score=22.24 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhheeeeeeCCC
Q 020687 138 GFFLLFSLFSLILWGASKSQK 158 (322)
Q Consensus 138 ~~vlL~gl~~LIlWlv~RP~k 158 (322)
++++.+++++-.+|..+||.+
T Consensus 3 ~~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 3 LLVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHHHhCHHh
Confidence 345556666666777778764
No 86
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.05 E-value=3.7e+02 Score=23.72 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=9.0
Q ss_pred EEEcCceEEEEEcce
Q 020687 206 VHVTSNPLDLSYSEI 220 (322)
Q Consensus 206 I~Y~~~~v~l~Y~~~ 220 (322)
.+|=...+.+.+.+.
T Consensus 86 ~ryLkv~i~L~~~~~ 100 (166)
T PRK12785 86 VQYLKLKVVLEVKDE 100 (166)
T ss_pred ceEEEEEEEEEECCH
Confidence 356666666666543
No 87
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.82 E-value=71 Score=25.00 Aligned_cols=18 Identities=0% Similarity=0.163 Sum_probs=9.2
Q ss_pred HHHHHHHHHhheeeeeeC
Q 020687 139 FFLLFSLFSLILWGASKS 156 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP 156 (322)
+++++.+++.++|....|
T Consensus 13 li~i~li~~~~~~~~~~~ 30 (85)
T PF11337_consen 13 LIVISLIIGIYYFFNGNP 30 (85)
T ss_pred HHHHHHHHHHHHhhcCch
Confidence 333334445566666655
No 88
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=21.75 E-value=1.1e+02 Score=22.24 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=12.6
Q ss_pred HHHHHHHHHhheeeeeeC
Q 020687 139 FFLLFSLFSLILWGASKS 156 (322)
Q Consensus 139 ~vlL~gl~~LIlWlv~RP 156 (322)
||++=.+|.||+|.-...
T Consensus 14 Fi~iPT~FLlilYVkT~s 31 (50)
T PRK14094 14 FVGVPTIFLIGLFISTQD 31 (50)
T ss_pred HHHHHHHHhhheeEEecc
Confidence 666777888888875433
No 89
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=21.43 E-value=59 Score=21.16 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhheeeeeeCCC
Q 020687 137 LGFFLLFSLFSLILWGASKSQK 158 (322)
Q Consensus 137 l~~vlL~gl~~LIlWlv~RP~k 158 (322)
++.++.+|+++-.++..+||.+
T Consensus 7 l~~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 7 LAGAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 3445555666666677778864
No 90
>PRK09458 pspB phage shock protein B; Provisional
Probab=21.27 E-value=43 Score=26.40 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhheeeeee
Q 020687 135 FVLGFFLLFSLFSLILWGASK 155 (322)
Q Consensus 135 ~ll~~vlL~gl~~LIlWlv~R 155 (322)
|++.-+++|.+|++-+||+++
T Consensus 5 fl~~PliiF~ifVaPiWL~LH 25 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLH 25 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHh
Confidence 444455667777777888754
No 91
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=21.26 E-value=58 Score=22.92 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHhheeee
Q 020687 131 YFLAFVLGFFLLFSLFSLILWGA 153 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LIlWlv 153 (322)
++++.++++=+++-++.|++++|
T Consensus 8 lflgl~~~lQL~LL~FlL~fFLV 30 (44)
T PF08135_consen 8 LFLGLTFALQLLLLVFLLFFFLV 30 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454444444444555555544
No 92
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.25 E-value=39 Score=28.04 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=9.2
Q ss_pred HHHhheeeeeeCCCCE
Q 020687 145 LFSLILWGASKSQKPK 160 (322)
Q Consensus 145 l~~LIlWlv~RP~kP~ 160 (322)
++++..|+.+||++=+
T Consensus 27 i~~i~yf~~~RpqkK~ 42 (106)
T PRK05585 27 FFAIFYFLIIRPQQKR 42 (106)
T ss_pred HHHHHHHHhccHHHHH
Confidence 3334445677996543
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=21.11 E-value=1e+02 Score=27.25 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhheeeeeeCCCC
Q 020687 136 VLGFFLLFSLFSLILWGASKSQKP 159 (322)
Q Consensus 136 ll~~vlL~gl~~LIlWlv~RP~kP 159 (322)
+++.+||+.++|||++.--|..|.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCC
Confidence 443455555677777775555443
No 94
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.03 E-value=75 Score=31.38 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHhheeeeeeCCC
Q 020687 132 FLAFVLGFFLLFSLFSLILWGASKSQK 158 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWlv~RP~k 158 (322)
++..+|+++++++++++++|++.-+..
T Consensus 8 ~~v~~f~~~~l~~~~~~~~~~~~~~~~ 34 (359)
T COG1463 8 VLVGLFLLLGLLAVLLFVLWLATLPGL 34 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 455566677777777778887765554
No 95
>PHA02844 putative transmembrane protein; Provisional
Probab=20.86 E-value=88 Score=24.63 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=5.5
Q ss_pred HHHHHHHHhheee
Q 020687 140 FLLFSLFSLILWG 152 (322)
Q Consensus 140 vlL~gl~~LIlWl 152 (322)
++++.++.+++||
T Consensus 57 ~v~~~~~~~flYL 69 (75)
T PHA02844 57 FVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444554
No 96
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=20.81 E-value=98 Score=28.45 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHhheeeeeeCC-CC
Q 020687 131 YFLAFVLGFFLLFSLFSLILWGASKSQ-KP 159 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LIlWlv~RP~-kP 159 (322)
|.+++++++++.++.++.++|+..+.+ .|
T Consensus 32 W~~~a~~~l~~a~~~v~~~~~l~~~~~i~P 61 (220)
T PRK13836 32 WRIVGILGLTMAVIGFGYALYQSTQVKLVP 61 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCeEEe
Confidence 445555445554444555668877654 44
No 97
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.69 E-value=32 Score=23.93 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=6.7
Q ss_pred HHHHHhheeeeeeC
Q 020687 143 FSLFSLILWGASKS 156 (322)
Q Consensus 143 ~gl~~LIlWlv~RP 156 (322)
+.+++++||+.+|-
T Consensus 25 ~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 25 IIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHhheEEec
Confidence 33344455555553
No 98
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=20.49 E-value=81 Score=22.58 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=6.0
Q ss_pred HHHHHHHhheeeeeeC
Q 020687 141 LLFSLFSLILWGASKS 156 (322)
Q Consensus 141 lL~gl~~LIlWlv~RP 156 (322)
+.+.++.++.+-+.||
T Consensus 11 ~~~~~~~~~~~~i~~p 26 (70)
T PF00672_consen 11 LSLLLAWLLARRITRP 26 (70)
T ss_dssp HHHHHHHH--HTTCCC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444454
No 99
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=20.39 E-value=81 Score=25.91 Aligned_cols=33 Identities=9% Similarity=0.306 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhheee-----eeeCCCCEEEEeeeEEEe
Q 020687 138 GFFLLFSLFSLILWG-----ASKSQKPKITMKSINFEH 170 (322)
Q Consensus 138 ~~vlL~gl~~LIlWl-----v~RP~kP~fsV~s~~v~~ 170 (322)
.++++++++++++|- +.-=..|..+++-..+..
T Consensus 7 ~~~iii~~~~~~~~~~~~~~~~n~~aP~~sv~a~Vv~K 44 (110)
T PF10694_consen 7 VFIIIIGIIIFVFIRQIRQWAKNNNAPVRSVPATVVDK 44 (110)
T ss_dssp ---------------------------EEEEEEEEEEE
T ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEe
Confidence 344455555554442 112244666655444443
No 100
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=20.14 E-value=52 Score=28.25 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHhheeeeee
Q 020687 132 FLAFVLGFFLLFSLFSLILWGASK 155 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWlv~R 155 (322)
++-++.+++++++++.++.||+-|
T Consensus 18 l~qv~~~L~lVl~lI~~~aWLlkR 41 (124)
T PRK11486 18 LLQVSGALIGIIALILAAAWLVKR 41 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777888888899865
No 101
>PF14030 DUF4245: Protein of unknown function (DUF4245)
Probab=20.07 E-value=72 Score=28.42 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhheeee
Q 020687 135 FVLGFFLLFSLFSLILWGA 153 (322)
Q Consensus 135 ~ll~~vlL~gl~~LIlWlv 153 (322)
+++.+++|++++++|++++
T Consensus 9 MilSL~vl~~~~~~i~~~~ 27 (169)
T PF14030_consen 9 MILSLAVLVAIVALIVAGV 27 (169)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444455555555554444
No 102
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.04 E-value=1e+02 Score=26.33 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=7.8
Q ss_pred HHHHHHHHHhheee
Q 020687 139 FFLLFSLFSLILWG 152 (322)
Q Consensus 139 ~vlL~gl~~LIlWl 152 (322)
++++++++++++|+
T Consensus 104 ~f~lV~~fi~~~~l 117 (118)
T KOG3385|consen 104 VFSLVAFFILWVWL 117 (118)
T ss_pred HHHHHHHHHhheee
Confidence 44455566666664
No 103
>COG4743 Predicted membrane protein [Function unknown]
Probab=20.03 E-value=3.6e+02 Score=26.17 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhheeeeeeCCCCEEEEeeeEEEeEEe-ccCCCCCCccceeEEEEEE
Q 020687 133 LAFVLGFFLLFSLFSLILWGASKSQKPKITMKSINFEHFKI-QAGSDFSGVATDMITVNST 192 (322)
Q Consensus 133 ~~~ll~~vlL~gl~~LIlWlv~RP~kP~fsV~s~~v~~fnv-~~gsd~sgvpt~~Ls~n~t 192 (322)
+.+++ .+++++.++-..|++..|+. +=+|+.|++ +.+.-..+.||+ ++++=+
T Consensus 173 lsviL-ii~ivaslgvl~Yvi~nP~p------gE~FTEFYILGP~GkA~~YPtn-~t~ge~ 225 (316)
T COG4743 173 LSVIL-IIAIVASLGVLAYVITNPKP------GEAFTEFYILGPGGKAYDYPTN-LTVGER 225 (316)
T ss_pred eeehh-HHHHHHHhhheEEEecCCCC------ccceeEEEEecCCccccCCCcc-eecCCc
Confidence 34443 44455556667899999975 446788887 445456677886 344433
No 104
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=20.03 E-value=61 Score=29.70 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHhheee
Q 020687 132 FLAFVLGFFLLFSLFSLILWG 152 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWl 152 (322)
...||.++||.+|+.+.|+++
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~ 180 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFL 180 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 367888888888877665544
Done!