Query 020687
Match_columns 322
No_of_seqs 166 out of 383
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 97.8 6.6E-05 2.3E-09 66.1 8.3 112 157-289 43-155 (174)
2 1xo8_A AT1G01470; structural g 97.0 0.00011 3.7E-09 63.1 -0.1 105 157-282 20-125 (151)
3 3but_A Uncharacterized protein 95.6 0.044 1.5E-06 46.1 8.2 65 188-253 17-82 (136)
4 2knc_B Integrin beta-3; transm 61.8 4.1 0.00014 31.0 2.2 22 132-153 13-34 (79)
5 2lot_A Apelin receptor; membra 58.2 0.67 2.3E-05 34.2 -2.7 24 132-155 30-55 (64)
6 2k9j_B Integrin beta-3; transm 53.9 7.5 0.00026 26.2 2.2 21 132-152 12-32 (43)
7 2k1a_A Integrin alpha-IIB; sin 44.7 12 0.00042 25.2 2.1 28 131-159 13-42 (42)
8 2l8s_A Integrin alpha-1; trans 43.9 10 0.00035 27.0 1.7 26 134-159 14-41 (54)
9 2knc_A Integrin alpha-IIB; tra 43.7 11 0.00036 26.9 1.8 27 132-159 16-44 (54)
10 3s8f_C Cytochrome C oxidase po 42.5 9 0.00031 24.8 1.1 17 137-153 9-25 (34)
11 2lk9_A Bone marrow stromal ant 41.7 14 0.00047 23.9 1.9 22 134-155 9-30 (35)
12 1nwd_B GAD, glutamate decarbox 29.0 10 0.00034 22.9 -0.3 9 2-10 3-11 (28)
13 2rdd_B UPF0092 membrane protei 27.1 5.9 0.0002 25.7 -1.7 11 148-158 15-25 (37)
14 2lx0_A Membrane fusion protein 25.5 35 0.0012 21.1 1.7 22 132-153 5-26 (32)
15 3d8m_A BPP, baseplate protein, 25.1 1E+02 0.0035 26.5 5.2 44 192-237 76-119 (165)
16 3kdp_B Sodium/potassium-transp 24.2 30 0.001 32.2 1.8 22 141-162 28-52 (286)
17 2ks1_B Epidermal growth factor 22.3 29 0.00098 23.6 1.0 18 140-157 21-38 (44)
18 2knc_B Integrin beta-3; transm 22.3 26 0.00089 26.5 0.8 24 132-155 10-33 (79)
19 2l2t_A Receptor tyrosine-prote 20.7 40 0.0014 22.9 1.4 26 132-157 12-37 (44)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=97.77 E-value=6.6e-05 Score=66.12 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=81.9
Q ss_pred CCCEEEEeeeEEEeEEeccCCCCCCccceeEEEEEEEEEEEecCCCeEEEEEcCceEEEEEcceeeecCCCCc-ccccCC
Q 020687 157 QKPKITMKSINFEHFKIQAGSDFSGVATDMITVNSTVKMIYRNTGTFFGVHVTSNPLDLSYSEITIASGAIRK-FYQSRK 235 (322)
Q Consensus 157 ~kP~fsV~s~~v~~fnv~~gsd~sgvpt~~Ls~n~tv~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~lasg~lp~-FYQ~~k 235 (322)
.+|+++|.++.+..+.... ..+.+++.+.|||.+ .|-+......+.-++..||+|..+. .--+++
T Consensus 43 ~~PeV~v~~v~~~~~~l~~-------------~~~~l~LrV~NPN~~-pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~ 108 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDG-------------VDYHAKVSVKNPYSQ-SIPICQISYILKSATRTIASGTIPDPGSLVGS 108 (174)
T ss_dssp CCCEEEEEEEEEEEECSSS-------------EEEEEEEEEEECSSS-CCBCCSEEEEEEESSSCEEEEEESCCCBCCSS
T ss_pred CCCEEEEEEeEEeccccce-------------EEEEEEEEEECCCCC-CccccceEEEEEECCEEEEEEecCCCceECCC
Confidence 8999999999999987753 445677888999996 9999999999999999999998866 677899
Q ss_pred CeEEEEEEEEeeeeeccCCcccccccccCCCCcccEeEEEEEEEEEEEEEeeeE
Q 020687 236 SQKTVSVAVMGNKIPLYGSGAGLSINSTTGSTSHPVPLNLNFVVRSRAYVLGKL 289 (322)
Q Consensus 236 stt~v~~~l~G~~vpL~gag~~L~~~~~~~~~~g~VpL~L~~~vrvR~~vlG~l 289 (322)
.++++.+.+.-.-..|. ..+.+ . .....+|.+|++.+.+..-++|.+
T Consensus 109 g~~~v~Vpv~v~~~~l~---~~~~~--l--~~~~~i~Y~L~g~L~id~pv~G~~ 155 (174)
T 1yyc_A 109 GTTVLDVPVKVAYSIAV---SLMKD--M--CTDWDIDYQLDIGLTFDIPVVGDI 155 (174)
T ss_dssp EEEEEEEEEEESHHHHH---HTCCC--C--CSSEEECEEEEEEEEEECTTSSEE
T ss_pred CcEEEEEEEEEEHHHHH---HHHHh--c--CCCCccceEEEEEEEeccCCcCCE
Confidence 99999988765432221 11211 1 234578888887665443224543
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=96.98 E-value=0.00011 Score=63.08 Aligned_cols=105 Identities=11% Similarity=0.130 Sum_probs=75.2
Q ss_pred CCCEEEEeeeEEEeEEeccCCCCCCccceeEEEEEEEEEEEecCCCeEEEEEcCceEEEEEcceeeecCCCCc-ccccCC
Q 020687 157 QKPKITMKSINFEHFKIQAGSDFSGVATDMITVNSTVKMIYRNTGTFFGVHVTSNPLDLSYSEITIASGAIRK-FYQSRK 235 (322)
Q Consensus 157 ~kP~fsV~s~~v~~fnv~~gsd~sgvpt~~Ls~n~tv~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~lasg~lp~-FYQ~~k 235 (322)
++|+++|.++.+..+.... ..+.+++.+.|||.+ .|.+...+..+.-++..||+|..+. .--+++
T Consensus 20 ~~P~v~v~~v~~~~~~~~~-------------~~~~~~l~V~NPN~~-~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~ 85 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRDS-------------VEYLAKVSVTNPYSH-SIPICEISFTFHSAGREIGKGKIPDPGSLKAK 85 (151)
T ss_dssp CSCCCBCSEEEECCCTTTE-------------ECEEEEEEEECSSSS-CCCCEEEEEEEESSSSCEEEEEEEECCCCSSS
T ss_pred CCCEEEEEEeEEeccCcce-------------eEEEEEEEEECCCCC-CcccccEEEEEEECCEEEEEEecCCCcEECCC
Confidence 7899999999888765542 356677889999996 9999988888888899999998855 667899
Q ss_pred CeEEEEEEEEeeeeeccCCcccccccccCCCCcccEeEEEEEEEEEE
Q 020687 236 SQKTVSVAVMGNKIPLYGSGAGLSINSTTGSTSHPVPLNLNFVVRSR 282 (322)
Q Consensus 236 stt~v~~~l~G~~vpL~gag~~L~~~~~~~~~~g~VpL~L~~~vrvR 282 (322)
.++++.+.+...-..+.. .+.+ . .....+|.+|++.+.+.
T Consensus 86 g~~~v~vpv~v~~~~l~~---~~~~--l--~~~~~i~Y~l~g~l~i~ 125 (151)
T 1xo8_A 86 DMTALDIPVVVPYSILFN---LARD--V--GVDWDIDYELQIGLTID 125 (151)
T ss_dssp SEEEEEECCCEEHHHHHH---HHHH--H--HHHSEEEEEEEEEEEEC
T ss_pred CcEEEEEEEEEEHHHHHH---HHHh--c--ccCCcccEEEEEEEEEc
Confidence 999998776544211111 1111 1 12357888888777544
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=95.59 E-value=0.044 Score=46.12 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=54.0
Q ss_pred EEEEEEEEEEecCCCeEEEEEcCceEEEEEcceeeecCC-CCcccccCCCeEEEEEEEEeeeeeccC
Q 020687 188 TVNSTVKMIYRNTGTFFGVHVTSNPLDLSYSEITIASGA-IRKFYQSRKSQKTVSVAVMGNKIPLYG 253 (322)
Q Consensus 188 s~n~tv~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~lasg~-lp~FYQ~~kstt~v~~~l~G~~vpL~g 253 (322)
...+.+++.+.|||.+ .|-++.....+..+++.||.|. ...+--++.+++++.+.+.-+.-.+..
T Consensus 17 ~t~~~~~l~V~NPN~~-~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~ 82 (136)
T 3but_A 17 QTEIVALAKVRNEDVV-PIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE 82 (136)
T ss_dssp EEEEEEEEEEECCSSS-CEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT
T ss_pred EEEEEEEEEEeCCCCc-ceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH
Confidence 3567788999999985 9999999999999999999997 567888889999999988777544443
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=61.82 E-value=4.1 Score=31.01 Aligned_cols=22 Identities=36% Similarity=0.686 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHhheeee
Q 020687 132 FLAFVLGFFLLFSLFSLILWGA 153 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWlv 153 (322)
+++.+++.++|+|+++|++|-+
T Consensus 13 Iv~gvi~gilliGllllliwk~ 34 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556788889988888853
No 5
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=58.23 E-value=0.67 Score=34.17 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHH--Hhheeeeee
Q 020687 132 FLAFVLGFFLLFSLF--SLILWGASK 155 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~--~LIlWlv~R 155 (322)
++.++.++++++|++ +|++|.+.+
T Consensus 30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~ 55 (64)
T 2lot_A 30 LIPAIYMLVFLLGTTGNGLVLWTVFR 55 (64)
T ss_dssp SSHHHHHHTTTTTTTSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhheeeeeE
Confidence 344455566666766 467776654
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=53.92 E-value=7.5 Score=26.23 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHhheee
Q 020687 132 FLAFVLGFFLLFSLFSLILWG 152 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWl 152 (322)
+...+++.++++|+++|++|=
T Consensus 12 Iv~gvi~~ivliGl~lLliwk 32 (43)
T 2k9j_B 12 VLLSVMGAILLIGLAALLIWK 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334455668889999998884
No 7
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=44.71 E-value=12 Score=25.20 Aligned_cols=28 Identities=29% Similarity=0.708 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHhhee--eeeeCCCC
Q 020687 131 YFLAFVLGFFLLFSLFSLILW--GASKSQKP 159 (322)
Q Consensus 131 ~~~~~ll~~vlL~gl~~LIlW--lv~RP~kP 159 (322)
++++++ +-+++++++.+++| +.++-++|
T Consensus 13 Ii~s~l-~GLllL~li~~~LwK~GFFkR~~~ 42 (42)
T 2k1a_A 13 VLVGVL-GGLLLLTILVLAMWKVGFFKRNRP 42 (42)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTTTTCCCCC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHcCcccCCCC
Confidence 344444 45566677778888 55555543
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=43.88 E-value=10 Score=27.00 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhee--eeeeCCCC
Q 020687 134 AFVLGFFLLFSLFSLILW--GASKSQKP 159 (322)
Q Consensus 134 ~~ll~~vlL~gl~~LIlW--lv~RP~kP 159 (322)
..+++-+++++++++++| +.++-++|
T Consensus 14 ~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 333445666777888888 66766655
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.75 E-value=11 Score=26.91 Aligned_cols=27 Identities=30% Similarity=0.748 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHhhee--eeeeCCCC
Q 020687 132 FLAFVLGFFLLFSLFSLILW--GASKSQKP 159 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlW--lv~RP~kP 159 (322)
+++++ +-+++++++.+++| +.++-++|
T Consensus 16 i~svl-~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 16 LVGVL-GGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCcccCCCC
Confidence 34444 45666777788888 66666554
No 10
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=42.48 E-value=9 Score=24.80 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhheeee
Q 020687 137 LGFFLLFSLFSLILWGA 153 (322)
Q Consensus 137 l~~vlL~gl~~LIlWlv 153 (322)
++.++++|++++|.|+.
T Consensus 9 l~~V~ilg~~I~i~W~~ 25 (34)
T 3s8f_C 9 LAVILVLTLTILVFWLG 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 34666777777877753
No 11
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=41.73 E-value=14 Score=23.91 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhheeeeee
Q 020687 134 AFVLGFFLLFSLFSLILWGASK 155 (322)
Q Consensus 134 ~~ll~~vlL~gl~~LIlWlv~R 155 (322)
..++.+++++++.++.++.+.|
T Consensus 9 ~Gvl~LLviV~LgV~LI~f~~k 30 (35)
T 2lk9_A 9 IGILVLLIIVILGVPLIIFTIK 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHhcchheEEeee
Confidence 3344455555555555544444
No 12
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=29.03 E-value=10 Score=22.92 Aligned_cols=9 Identities=78% Similarity=0.933 Sum_probs=6.9
Q ss_pred CCCCccccc
Q 020687 2 HAKTDSEVT 10 (322)
Q Consensus 2 ~ak~ds~~t 10 (322)
|.||||||.
T Consensus 3 hkktdsevq 11 (28)
T 1nwd_B 3 HKKTDSEVQ 11 (28)
T ss_dssp SSCCHHHHH
T ss_pred CccchHHHH
Confidence 778888874
No 13
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=27.14 E-value=5.9 Score=25.74 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=6.7
Q ss_pred hheeeeeeCCC
Q 020687 148 LILWGASKSQK 158 (322)
Q Consensus 148 LIlWlv~RP~k 158 (322)
...|+..||++
T Consensus 15 ifYFl~iRPQ~ 25 (37)
T 2rdd_B 15 IFYFMILRPQQ 25 (37)
T ss_dssp HHHHHTHHHHH
T ss_pred HHHHHHhhhHH
Confidence 34566778853
No 14
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=25.49 E-value=35 Score=21.14 Aligned_cols=22 Identities=14% Similarity=0.446 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHhheeee
Q 020687 132 FLAFVLGFFLLFSLFSLILWGA 153 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWlv 153 (322)
+|-.+.+++.|+.+.++-+||.
T Consensus 5 iweviaglvalltflafgfwlf 26 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAFGFWLF 26 (32)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777764
No 15
>3d8m_A BPP, baseplate protein, receptor binding protein; lactococcal phage P2, lactococcal phage TP901-1, receptor BI protein; 3.35A {Lactococcus phage tp901-1}
Probab=25.11 E-value=1e+02 Score=26.54 Aligned_cols=44 Identities=7% Similarity=0.078 Sum_probs=33.3
Q ss_pred EEEEEEecCCCeEEEEEcCceEEEEEcceeeecCCCCcccccCCCe
Q 020687 192 TVKMIYRNTGTFFGVHVTSNPLDLSYSEITIASGAIRKFYQSRKSQ 237 (322)
Q Consensus 192 tv~v~~rNPN~~~GI~Y~~~~v~l~Y~~~~lasg~lp~FYQ~~kst 237 (322)
+++++-+| |..+-|++...- ...|.+..++.+.+|.=|+|.+.+
T Consensus 76 tl~ltkk~-~d~V~v~~~G~v-t~i~sg~~~~g~wvp~~f~P~~~~ 119 (165)
T 3d8m_A 76 QLQLTKKN-NDLVIVRFFGSV-SNIQKGWNMSGTWVDRPFRPAAVQ 119 (165)
T ss_dssp EEEEEEET-TTEEEEEEEEEE-CSBCTTCBCCSCCCCGGGCCSSCE
T ss_pred EEEEEEcc-CCEEEEEEeeEE-EeEEccceeecceecCCcccccee
Confidence 56788888 887777765433 666788889888999888887763
No 16
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=24.21 E-value=30 Score=32.24 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=16.2
Q ss_pred HHHHHHHhheeee---eeCCCCEEE
Q 020687 141 LLFSLFSLILWGA---SKSQKPKIT 162 (322)
Q Consensus 141 lL~gl~~LIlWlv---~RP~kP~fs 162 (322)
+|+|+|++-+|.. +-|+.|++.
T Consensus 28 ~La~lFa~~m~v~l~TLd~~~Pkyq 52 (286)
T 3kdp_B 28 CLAGIFIGTIQVMLLTISEFKPTYQ 52 (286)
T ss_dssp HHHHHHHHHHHGGGSCSCSSSCSCC
T ss_pred HHHHHHHHHHHHHHHhCcccCCccc
Confidence 3666776655555 789999998
No 17
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.34 E-value=29 Score=23.55 Aligned_cols=18 Identities=17% Similarity=0.133 Sum_probs=9.0
Q ss_pred HHHHHHHHhheeeeeeCC
Q 020687 140 FLLFSLFSLILWGASKSQ 157 (322)
Q Consensus 140 vlL~gl~~LIlWlv~RP~ 157 (322)
++++.++++++|+..|=+
T Consensus 21 v~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333444556666555543
No 18
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.32 E-value=26 Score=26.48 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHhheeeeee
Q 020687 132 FLAFVLGFFLLFSLFSLILWGASK 155 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWlv~R 155 (322)
+++++++++..+.++.|+++++.|
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666777766543
No 19
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.69 E-value=40 Score=22.90 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHhheeeeeeCC
Q 020687 132 FLAFVLGFFLLFSLFSLILWGASKSQ 157 (322)
Q Consensus 132 ~~~~ll~~vlL~gl~~LIlWlv~RP~ 157 (322)
+.+.+++=++++.++++.+|+..|=+
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 33334333344445556666665544
Done!