Query 020688
Match_columns 322
No_of_seqs 235 out of 1559
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 7.2E-34 1.6E-38 280.5 21.4 234 49-295 299-536 (571)
2 KOG4441 Proteins containing BT 100.0 4.3E-34 9.3E-39 282.1 18.9 187 93-292 297-486 (571)
3 PHA02713 hypothetical protein; 100.0 1.2E-33 2.6E-38 279.4 21.1 239 54-302 275-537 (557)
4 PHA02713 hypothetical protein; 100.0 3.8E-32 8.2E-37 268.8 21.7 186 98-291 273-473 (557)
5 PHA03098 kelch-like protein; P 100.0 3E-30 6.4E-35 255.3 22.7 199 96-304 310-512 (534)
6 PHA02790 Kelch-like protein; P 100.0 2.7E-30 5.8E-35 251.9 19.0 167 98-291 288-456 (480)
7 PLN02153 epithiospecifier prot 100.0 6.1E-29 1.3E-33 232.7 23.0 193 95-291 48-261 (341)
8 PLN02153 epithiospecifier prot 100.0 3.3E-28 7.2E-33 227.7 24.3 182 104-291 4-203 (341)
9 TIGR03548 mutarot_permut cycli 100.0 1.2E-28 2.5E-33 229.1 17.7 186 98-292 89-314 (323)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 5.2E-28 1.1E-32 226.8 21.4 202 97-304 85-345 (346)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 4.1E-28 9E-33 227.5 20.5 187 99-291 31-267 (346)
12 TIGR03548 mutarot_permut cycli 100.0 1.3E-27 2.7E-32 222.2 21.7 171 107-291 51-233 (323)
13 PLN02193 nitrile-specifier pro 100.0 2.4E-27 5.2E-32 230.6 23.1 184 95-291 191-387 (470)
14 PLN02193 nitrile-specifier pro 100.0 5.2E-27 1.1E-31 228.3 22.6 186 106-302 150-350 (470)
15 KOG4693 Uncharacterized conser 100.0 1.2E-27 2.7E-32 206.6 14.0 199 87-291 95-312 (392)
16 PHA03098 kelch-like protein; P 99.9 6.1E-27 1.3E-31 231.7 19.7 177 102-291 269-447 (534)
17 PRK14131 N-acetylneuraminic ac 99.9 1.4E-26 3.1E-31 219.5 20.6 190 97-292 106-354 (376)
18 PHA02790 Kelch-like protein; P 99.9 8.3E-27 1.8E-31 227.4 17.6 205 31-265 270-476 (480)
19 PRK14131 N-acetylneuraminic ac 99.9 1.7E-25 3.7E-30 212.0 20.8 188 99-291 52-289 (376)
20 KOG4693 Uncharacterized conser 99.9 1.1E-24 2.5E-29 188.3 13.6 187 101-291 48-260 (392)
21 KOG0379 Kelch repeat-containin 99.9 2.8E-23 6.1E-28 202.1 18.5 185 98-292 89-286 (482)
22 KOG1230 Protein containing rep 99.9 2.9E-23 6.3E-28 188.8 15.2 214 95-312 96-349 (521)
23 KOG1230 Protein containing rep 99.9 1.7E-22 3.6E-27 183.9 15.9 192 92-291 38-252 (521)
24 KOG0379 Kelch repeat-containin 99.9 6.3E-22 1.4E-26 192.7 19.7 188 113-311 55-254 (482)
25 KOG4152 Host cell transcriptio 99.8 4.2E-19 9.2E-24 165.4 14.0 225 55-291 18-274 (830)
26 KOG4152 Host cell transcriptio 99.8 1.6E-18 3.5E-23 161.5 15.9 202 83-291 94-342 (830)
27 COG3055 Uncharacterized protei 99.5 4E-13 8.7E-18 121.4 13.9 130 106-236 69-236 (381)
28 KOG2437 Muskelin [Signal trans 99.4 6.1E-14 1.3E-18 131.0 4.7 192 105-302 237-470 (723)
29 COG3055 Uncharacterized protei 99.4 2.3E-12 4.9E-17 116.6 13.0 173 110-291 28-238 (381)
30 PF13964 Kelch_6: Kelch motif 99.3 2.6E-12 5.7E-17 85.8 6.3 50 168-219 1-50 (50)
31 PF13964 Kelch_6: Kelch motif 99.3 3.8E-12 8.1E-17 85.0 6.4 50 118-169 1-50 (50)
32 PF01344 Kelch_1: Kelch motif; 99.2 4.3E-11 9.3E-16 78.7 5.0 47 118-164 1-47 (47)
33 PF01344 Kelch_1: Kelch motif; 99.1 9.2E-11 2E-15 77.1 4.5 47 168-216 1-47 (47)
34 PF07646 Kelch_2: Kelch motif; 99.1 4.7E-10 1E-14 74.4 6.2 47 118-164 1-49 (49)
35 PF13418 Kelch_4: Galactose ox 99.0 3.1E-10 6.7E-15 75.3 4.4 47 118-164 1-48 (49)
36 PF13415 Kelch_3: Galactose ox 99.0 9.5E-10 2.1E-14 73.0 6.1 48 128-177 1-49 (49)
37 PF13415 Kelch_3: Galactose ox 99.0 1.6E-09 3.4E-14 71.9 5.6 49 178-227 1-49 (49)
38 PF07646 Kelch_2: Kelch motif; 98.9 2.2E-09 4.7E-14 71.2 6.1 49 168-216 1-49 (49)
39 KOG2437 Muskelin [Signal trans 98.9 1.5E-09 3.2E-14 102.1 4.5 134 153-295 237-399 (723)
40 PF13418 Kelch_4: Galactose ox 98.9 2.9E-09 6.2E-14 70.6 4.4 47 168-216 1-48 (49)
41 smart00612 Kelch Kelch domain. 98.9 4.3E-09 9.4E-14 68.6 5.1 47 180-229 1-47 (47)
42 smart00612 Kelch Kelch domain. 98.8 9.6E-09 2.1E-13 66.9 5.0 47 130-179 1-47 (47)
43 PLN02772 guanylate kinase 98.8 4.7E-08 1E-12 91.7 11.1 86 116-206 22-109 (398)
44 PLN02772 guanylate kinase 98.6 1.8E-07 4E-12 87.7 10.5 79 168-252 24-106 (398)
45 PF13854 Kelch_5: Kelch motif 98.6 8.2E-08 1.8E-12 61.4 5.4 40 115-154 1-41 (42)
46 PF13854 Kelch_5: Kelch motif 98.3 1.3E-06 2.7E-11 55.8 5.2 39 166-206 2-41 (42)
47 PF03089 RAG2: Recombination a 98.1 0.00065 1.4E-08 60.5 18.2 171 111-287 80-281 (337)
48 TIGR01640 F_box_assoc_1 F-box 98.1 0.00068 1.5E-08 59.8 18.6 179 98-289 15-215 (230)
49 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00012 2.5E-09 65.0 12.0 126 100-237 49-189 (243)
50 PF07250 Glyoxal_oxid_N: Glyox 97.7 0.001 2.2E-08 59.1 12.8 85 147-239 48-139 (243)
51 TIGR01640 F_box_assoc_1 F-box 97.3 0.027 5.8E-07 49.5 17.4 136 145-290 14-162 (230)
52 PF03089 RAG2: Recombination a 97.3 0.0071 1.5E-07 54.1 13.1 108 132-241 42-177 (337)
53 PF07893 DUF1668: Protein of u 96.8 0.12 2.5E-06 48.6 17.4 127 175-310 73-221 (342)
54 PF12768 Rax2: Cortical protei 96.4 0.074 1.6E-06 48.4 12.6 119 132-266 2-128 (281)
55 PF07893 DUF1668: Protein of u 96.3 0.094 2E-06 49.2 13.5 109 99-215 88-217 (342)
56 PF12768 Rax2: Cortical protei 95.5 0.34 7.4E-06 44.1 12.8 112 95-214 14-130 (281)
57 PRK11138 outer membrane biogen 95.5 1 2.3E-05 42.9 16.9 135 123-288 64-212 (394)
58 PRK00178 tolB translocation pr 95.1 2.5 5.5E-05 40.6 18.4 152 145-318 267-419 (430)
59 PF13360 PQQ_2: PQQ-like domai 95.1 2 4.4E-05 37.2 18.6 135 125-291 33-183 (238)
60 PRK11138 outer membrane biogen 94.6 2.6 5.6E-05 40.2 16.9 127 125-288 253-383 (394)
61 TIGR02800 propeller_TolB tol-p 94.5 4.3 9.2E-05 38.6 18.2 154 145-319 258-411 (417)
62 PRK04792 tolB translocation pr 94.1 4.7 0.0001 39.2 17.6 74 128-213 273-346 (448)
63 PRK04043 tolB translocation pr 93.4 7.9 0.00017 37.4 18.9 156 145-318 257-413 (419)
64 KOG0649 WD40 repeat protein [G 92.6 5.6 0.00012 35.3 13.5 158 106-296 98-272 (325)
65 TIGR03300 assembly_YfgL outer 92.5 6.6 0.00014 37.0 15.5 128 123-286 60-195 (377)
66 PF05096 Glu_cyclase_2: Glutam 92.5 1.4 3.1E-05 39.6 10.0 100 123-238 49-149 (264)
67 TIGR03300 assembly_YfgL outer 92.3 9.8 0.00021 35.8 16.4 132 126-288 143-286 (377)
68 PF13360 PQQ_2: PQQ-like domai 91.7 7.3 0.00016 33.6 13.9 120 99-237 48-182 (238)
69 smart00284 OLF Olfactomedin-li 91.1 3.5 7.6E-05 36.9 11.0 141 128-288 34-192 (255)
70 PRK04922 tolB translocation pr 91.0 15 0.00033 35.4 18.5 164 128-318 259-424 (433)
71 PF08268 FBA_3: F-box associat 90.6 2.8 6E-05 33.2 9.2 82 176-266 3-87 (129)
72 PF02191 OLF: Olfactomedin-lik 90.6 2.6 5.6E-05 37.8 9.8 142 128-291 30-190 (250)
73 PRK02889 tolB translocation pr 90.6 17 0.00037 35.1 18.3 154 145-320 264-418 (427)
74 TIGR02800 propeller_TolB tol-p 89.8 18 0.0004 34.2 16.5 63 145-215 214-276 (417)
75 PF08268 FBA_3: F-box associat 89.7 4.9 0.00011 31.7 9.9 83 126-212 3-87 (129)
76 PLN03215 ascorbic acid mannose 88.2 24 0.00052 33.5 16.6 150 154-322 189-365 (373)
77 KOG2055 WD40 repeat protein [G 87.4 8.2 0.00018 37.2 10.9 147 128-301 224-375 (514)
78 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.8 19 0.00041 35.9 14.0 96 123-234 64-171 (527)
79 PRK03629 tolB translocation pr 86.6 32 0.00069 33.2 17.0 60 146-213 268-327 (429)
80 TIGR03866 PQQ_ABC_repeats PQQ- 85.2 25 0.00054 30.9 13.0 64 130-211 2-67 (300)
81 cd00094 HX Hemopexin-like repe 84.9 23 0.0005 30.1 13.6 151 123-298 11-175 (194)
82 PRK04792 tolB translocation pr 83.6 45 0.00098 32.4 17.3 62 145-214 242-303 (448)
83 PF05096 Glu_cyclase_2: Glutam 83.2 20 0.00042 32.4 10.9 103 170-291 46-149 (264)
84 KOG2055 WD40 repeat protein [G 82.5 12 0.00027 36.0 9.7 122 98-236 281-406 (514)
85 PRK05137 tolB translocation pr 82.1 50 0.0011 31.8 17.7 104 99-214 228-331 (435)
86 PRK13684 Ycf48-like protein; P 79.9 45 0.00097 31.1 12.8 150 106-290 161-322 (334)
87 PF08450 SGL: SMP-30/Gluconola 79.4 33 0.00072 30.0 11.3 159 102-287 65-243 (246)
88 PF09910 DUF2139: Uncharacteri 79.3 52 0.0011 30.3 16.6 155 109-287 25-219 (339)
89 PRK00178 tolB translocation pr 78.6 64 0.0014 30.9 16.7 63 145-215 223-285 (430)
90 PF03178 CPSF_A: CPSF A subuni 78.3 50 0.0011 30.3 12.6 96 129-236 42-147 (321)
91 PF08450 SGL: SMP-30/Gluconola 76.9 45 0.00097 29.1 11.4 76 128-212 51-129 (246)
92 PRK13684 Ycf48-like protein; P 75.4 70 0.0015 29.8 15.0 113 106-237 118-234 (334)
93 PRK05137 tolB translocation pr 72.0 97 0.0021 29.8 17.1 64 145-216 226-289 (435)
94 PRK04922 tolB translocation pr 71.2 1E+02 0.0022 29.7 16.3 62 145-214 228-289 (433)
95 PF03178 CPSF_A: CPSF A subuni 70.1 22 0.00048 32.6 8.0 112 108-236 78-191 (321)
96 PF13859 BNR_3: BNR repeat-lik 69.4 96 0.0021 28.7 12.1 170 123-299 3-201 (310)
97 TIGR03074 PQQ_membr_DH membran 67.1 1.4E+02 0.003 31.4 13.6 32 123-161 189-222 (764)
98 KOG2048 WD40 repeat protein [G 66.7 92 0.002 31.7 11.5 88 111-213 420-513 (691)
99 smart00284 OLF Olfactomedin-li 66.4 99 0.0022 27.8 16.4 110 114-235 69-192 (255)
100 COG0823 TolB Periplasmic compo 65.4 1.4E+02 0.003 29.0 14.3 104 145-266 262-366 (425)
101 PLN03215 ascorbic acid mannose 65.1 1.3E+02 0.0028 28.7 13.1 100 107-216 190-305 (373)
102 PF02191 OLF: Olfactomedin-lik 63.6 1.1E+02 0.0024 27.3 14.3 155 114-288 64-237 (250)
103 KOG0310 Conserved WD40 repeat- 63.3 87 0.0019 30.5 10.3 98 126-239 77-176 (487)
104 COG4257 Vgb Streptogramin lyas 58.3 36 0.00077 31.0 6.4 59 146-213 255-313 (353)
105 PRK01742 tolB translocation pr 56.6 1.9E+02 0.0041 27.8 14.8 59 146-212 273-331 (429)
106 PF05262 Borrelia_P83: Borreli 55.2 1.4E+02 0.003 29.6 10.5 101 142-257 372-472 (489)
107 cd00216 PQQ_DH Dehydrogenases 55.2 2.2E+02 0.0047 28.0 14.8 123 146-287 312-454 (488)
108 KOG0310 Conserved WD40 repeat- 54.1 1.7E+02 0.0036 28.7 10.5 24 127-156 164-187 (487)
109 TIGR03075 PQQ_enz_alc_DH PQQ-d 54.1 1.7E+02 0.0037 29.2 11.3 102 99-211 81-197 (527)
110 COG1520 FOG: WD40-like repeat 53.7 1.9E+02 0.0042 27.0 11.6 92 175-287 65-159 (370)
111 cd00216 PQQ_DH Dehydrogenases 53.5 1.4E+02 0.003 29.4 10.6 92 174-286 57-161 (488)
112 PF12217 End_beta_propel: Cata 53.4 1.8E+02 0.0038 26.4 14.3 129 106-237 114-258 (367)
113 cd00094 HX Hemopexin-like repe 52.7 1.4E+02 0.0031 25.2 12.0 89 129-237 63-167 (194)
114 PF07734 FBA_1: F-box associat 52.7 1.1E+02 0.0023 25.1 8.3 84 175-266 2-90 (164)
115 PF13570 PQQ_3: PQQ-like domai 51.8 31 0.00067 20.9 3.7 26 172-206 15-40 (40)
116 PRK02889 tolB translocation pr 50.3 2.4E+02 0.0052 27.1 17.4 62 145-214 220-281 (427)
117 PF03597 CcoS: Cytochrome oxid 49.6 21 0.00046 22.8 2.7 23 18-40 5-27 (45)
118 PRK04043 tolB translocation pr 45.6 2.9E+02 0.0062 26.7 17.0 84 145-236 213-296 (419)
119 COG1520 FOG: WD40-like repeat 43.2 2.8E+02 0.0061 25.9 15.1 134 125-288 65-204 (370)
120 TIGR00847 ccoS cytochrome oxid 43.1 30 0.00065 22.8 2.7 22 18-39 6-27 (51)
121 PF08662 eIF2A: Eukaryotic tra 42.5 2.1E+02 0.0045 24.2 9.3 90 128-236 71-162 (194)
122 PRK11028 6-phosphogluconolacto 42.3 2.7E+02 0.0058 25.3 14.8 72 129-216 2-77 (330)
123 PF06433 Me-amine-dh_H: Methyl 42.0 79 0.0017 29.7 6.3 70 128-209 249-324 (342)
124 PF13623 SurA_N_2: SurA N-term 40.3 29 0.00064 28.2 2.9 27 11-39 4-31 (145)
125 TIGR02658 TTQ_MADH_Hv methylam 39.8 1.5E+02 0.0033 28.0 7.9 69 128-208 259-333 (352)
126 PF14870 PSII_BNR: Photosynthe 39.6 3.1E+02 0.0067 25.3 14.8 157 106-291 90-253 (302)
127 PF14870 PSII_BNR: Photosynthe 39.2 3.1E+02 0.0068 25.2 11.0 114 106-236 5-122 (302)
128 KOG2048 WD40 repeat protein [G 38.8 4.4E+02 0.0095 27.0 11.1 151 146-319 226-384 (691)
129 PRK03629 tolB translocation pr 38.2 3.7E+02 0.008 25.8 16.9 63 145-215 223-285 (429)
130 COG3197 FixS Uncharacterized p 37.3 40 0.00087 22.8 2.6 21 19-39 7-27 (58)
131 PF09910 DUF2139: Uncharacteri 35.9 3.6E+02 0.0078 25.0 10.6 94 128-234 117-219 (339)
132 TIGR02658 TTQ_MADH_Hv methylam 35.8 3.8E+02 0.0083 25.3 13.2 77 129-210 13-90 (352)
133 TIGR03866 PQQ_ABC_repeats PQQ- 35.0 3E+02 0.0065 23.8 10.7 64 129-208 43-106 (300)
134 PRK01742 tolB translocation pr 34.5 4.2E+02 0.0091 25.4 11.3 61 145-213 228-288 (429)
135 KOG0278 Serine/threonine kinas 33.8 1.6E+02 0.0035 26.5 6.6 65 128-206 235-300 (334)
136 KOG0286 G-protein beta subunit 33.2 3.9E+02 0.0086 24.6 13.4 70 128-211 108-180 (343)
137 PRK01029 tolB translocation pr 33.1 4.1E+02 0.0089 25.6 10.1 61 145-213 351-411 (428)
138 COG4257 Vgb Streptogramin lyas 33.0 3.9E+02 0.0085 24.6 11.6 119 126-273 197-318 (353)
139 PF12217 End_beta_propel: Cata 30.4 4.2E+02 0.0091 24.1 11.5 65 121-187 193-258 (367)
140 PLN00033 photosystem II stabil 28.6 5.4E+02 0.012 24.7 12.0 107 109-236 272-389 (398)
141 PF03022 MRJP: Major royal jel 27.6 4.7E+02 0.01 23.7 12.6 99 128-234 11-126 (287)
142 PF10282 Lactonase: Lactonase, 26.6 3.5E+02 0.0075 25.0 8.2 96 133-234 3-104 (345)
143 KOG0292 Vesicle coat complex C 26.5 6.4E+02 0.014 27.2 10.2 129 130-299 219-349 (1202)
144 PF07734 FBA_1: F-box associat 25.1 3.7E+02 0.0081 21.8 9.8 83 125-212 2-90 (164)
145 PF08950 DUF1861: Protein of u 24.7 5E+02 0.011 23.7 8.2 108 176-287 34-145 (298)
146 KOG0318 WD40 repeat stress pro 24.1 2.9E+02 0.0063 27.5 7.0 93 128-237 454-550 (603)
147 KOG1332 Vesicle coat complex C 23.7 3.2E+02 0.007 24.6 6.7 71 168-266 222-294 (299)
148 PF10282 Lactonase: Lactonase, 23.6 5.9E+02 0.013 23.5 10.2 75 128-216 203-288 (345)
149 COG4880 Secreted protein conta 23.4 7.1E+02 0.015 24.4 10.7 76 122-206 380-458 (603)
150 KOG2321 WD40 repeat protein [G 23.3 2.2E+02 0.0047 28.7 6.0 74 117-208 132-208 (703)
151 KOG1332 Vesicle coat complex C 22.9 5.7E+02 0.012 23.1 8.5 53 151-214 241-296 (299)
152 PF13088 BNR_2: BNR repeat-lik 21.8 5.3E+02 0.011 22.5 8.1 125 103-233 141-275 (275)
153 KOG0316 Conserved WD40 repeat- 20.5 6.3E+02 0.014 22.7 8.5 83 145-239 81-165 (307)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.2e-34 Score=280.52 Aligned_cols=234 Identities=17% Similarity=0.242 Sum_probs=188.4
Q ss_pred cccccccceeccCceeecCCcccchhhhhhhhhhhh--cccCCChhhhhhhhhhccCCCCCCEEEcCCCCCCcccceEEE
Q 020688 49 HLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVI--DKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQ 126 (322)
Q Consensus 49 ~~~~~s~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~ 126 (322)
.......+++.++.|..+..+...+....-.....+ ...+.+.+....+.++.||+.+++|..+++|+.+|..+++++
T Consensus 299 ~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 299 SLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 345666778878878877666422221111111111 123333133344556788888999999999999999999999
Q ss_pred ECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCC
Q 020688 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (322)
Q Consensus 127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t 206 (322)
++++||++||+++... ++++++|||.+++|+.+++|+. +|+.+++++++++||++||.++... .++++++|||.+
T Consensus 379 l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~~~~--~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDGSSN--CLNSVECYDPET 453 (571)
T ss_pred ECCEEEEEeccccccc-cccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEEcCcCCCcc--ccceEEEEcCCC
Confidence 9999999999997766 7789999999999999999998 8999999999999999999988772 289999999999
Q ss_pred CcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCC--CCCcceEEEEeCCEE
Q 020688 207 RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI--PRGGPHRFAGFPHVI 284 (322)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~--pr~~~~~~~v~~~~i 284 (322)
++|+.+++|+.+|.++++++.+++||++||+++..... .+++|||. +++|+...++ +|.. +++++++++|
T Consensus 454 ~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~-----~VE~ydp~--~~~W~~v~~m~~~rs~-~g~~~~~~~l 525 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALS-----SVERYDPE--TNQWTMVAPMTSPRSA-VGVVVLGGKL 525 (571)
T ss_pred CceeecCCcccccccceEEEECCEEEEECCccCCCccc-----eEEEEcCC--CCceeEcccCcccccc-ccEEEECCEE
Confidence 99999999999999999999999999999998732222 48999987 9999987544 6888 7999999999
Q ss_pred EEEccccCCCC
Q 020688 285 YLSLVSSVEDL 295 (322)
Q Consensus 285 yi~GG~~~e~~ 295 (322)
|++||.+...+
T Consensus 526 y~vGG~~~~~~ 536 (571)
T KOG4441|consen 526 YAVGGFDGNNN 536 (571)
T ss_pred EEEecccCccc
Confidence 99999775444
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.3e-34 Score=282.11 Aligned_cols=187 Identities=22% Similarity=0.349 Sum_probs=168.0
Q ss_pred hhhhhhhhccCCCCCCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceee
Q 020688 93 RFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL 172 (322)
Q Consensus 93 ~~~~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~ 172 (322)
......+..||+.+++|..+++||.+|..+++++++++||++||++.....++++|+||+.+++|+.+++|+. +|..+
T Consensus 297 ~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~R~~~ 374 (571)
T KOG4441|consen 297 GQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--KRSDF 374 (571)
T ss_pred CcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--ccccc
Confidence 3445567788898999999999999999999999999999999998433347889999999999999999999 99999
Q ss_pred EEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCC-CCCCcceeEe
Q 020688 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSI 251 (322)
Q Consensus 173 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~-~~~~~~~~~i 251 (322)
++++++|+||++||.++... .+++|+|||.+++|+.+++|+.+|+++++++++++||++||.++.. ..+ ++
T Consensus 375 ~v~~l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~-----sv 446 (571)
T KOG4441|consen 375 GVAVLDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN-----SV 446 (571)
T ss_pred eeEEECCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccc-----eE
Confidence 99999999999999998776 7899999999999999999999999999999999999999987665 333 67
Q ss_pred EEecccccccccccccCC--CCCcceEEEEeCCEEEEEccccC
Q 020688 252 AVKDGKALEKAWRTEIPI--PRGGPHRFAGFPHVIYLSLVSSV 292 (322)
Q Consensus 252 ~~yd~~~~~~~W~~~~p~--pr~~~~~~~v~~~~iyi~GG~~~ 292 (322)
++|||. +++|+..+|+ +|.+ +++++++++||++||.+.
T Consensus 447 e~YDP~--t~~W~~~~~M~~~R~~-~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 447 ECYDPE--TNTWTLIAPMNTRRSG-FGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred EEEcCC--CCceeecCCccccccc-ceEEEECCEEEEECCccC
Confidence 899987 9999987655 6888 799999999999999773
No 3
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=279.40 Aligned_cols=239 Identities=15% Similarity=0.213 Sum_probs=181.6
Q ss_pred ccceeccCceeecCCcccchhhhhhhhhhhh--cccCCChhhhhhhhhhccCCCCCCEEEcCCCCCCcccceEEEECCEE
Q 020688 54 SNWALEKSGVVVIPHVNATKIDRQRESVAVI--DKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLF 131 (322)
Q Consensus 54 s~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~l 131 (322)
.++++.++.|..++++..............+ ...+..........++.||+.+++|..+++||.+|..+++++++++|
T Consensus 275 ~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~I 354 (557)
T PHA02713 275 LVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTI 354 (557)
T ss_pred EEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEE
Confidence 4567777778777665322111111111111 11221111112344667888899999999999999999999999999
Q ss_pred EEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCC---------------CCCC
Q 020688 132 YVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQC---------------RGPT 196 (322)
Q Consensus 132 yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~---------------~~~~ 196 (322)
|++||.++... .+++++|||.+++|+.+++||. +|..+++++++++|||+||.++... ....
T Consensus 355 YviGG~~~~~~-~~sve~Ydp~~~~W~~~~~mp~--~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (557)
T PHA02713 355 YAIGGQNGTNV-ERTIECYTMGDDKWKMLPDMPI--ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS 431 (557)
T ss_pred EEECCcCCCCC-CceEEEEECCCCeEEECCCCCc--ccccccEEEECCEEEEEeCCCccccccccccccccccccccccc
Confidence 99999875543 6789999999999999999998 8999999999999999999864321 0115
Q ss_pred ceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccc-cccccccCC--CCCc
Q 020688 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE-KAWRTEIPI--PRGG 273 (322)
Q Consensus 197 ~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~-~~W~~~~p~--pr~~ 273 (322)
+++++|||++++|+.+++|+.+|..+++++++|+||++||.++.... .-.+++|||. + ++|+..+++ +|..
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~----~~~ve~Ydp~--~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNV----KTCIFRYNTN--TYNGWELITTTESRLSA 505 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCcc----ceeEEEecCC--CCCCeeEccccCccccc
Confidence 78999999999999999999999999999999999999998643211 1247899986 8 799976555 5788
Q ss_pred ceEEEEeCCEEEEEcccc----CCCCceEEeec
Q 020688 274 PHRFAGFPHVIYLSLVSS----VEDLNFYVIQV 302 (322)
Q Consensus 274 ~~~~~v~~~~iyi~GG~~----~e~~~~~~~q~ 302 (322)
+++++++|+||++||.+ +|+||....|+
T Consensus 506 -~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 506 -LHTILHDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred -ceeEEECCEEEEEeeecceeehhhcCcccccc
Confidence 79999999999999943 67888777665
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.8e-32 Score=268.79 Aligned_cols=186 Identities=16% Similarity=0.176 Sum_probs=160.1
Q ss_pred hhhccCCCCCCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEe
Q 020688 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.+..||+.+++|..+++||.+|..+++++++++|||+||.+......+++++|||.+++|..+++|+. +|..++++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeEEEE
Confidence 35678898999999999999999999999999999999986444446889999999999999999998 8999999999
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCC-------------C
Q 020688 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT-------------P 244 (322)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~-------------~ 244 (322)
+++||++||.++... .+++++|||.+++|+.+++||.+|.++++++++|+||++||.++.... +
T Consensus 351 ~g~IYviGG~~~~~~---~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNV---ERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCC---CceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 999999999876554 678999999999999999999999999999999999999998642100 0
Q ss_pred CcceeEeEEecccccccccccccCC--CCCcceEEEEeCCEEEEEcccc
Q 020688 245 GLEHWSIAVKDGKALEKAWRTEIPI--PRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 245 ~~~~~~i~~yd~~~~~~~W~~~~p~--pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
....-.+++|||. +++|+..+|+ +|.. +++++++|+||++||.+
T Consensus 428 ~~~~~~ve~YDP~--td~W~~v~~m~~~r~~-~~~~~~~~~IYv~GG~~ 473 (557)
T PHA02713 428 THSSNKVIRYDTV--NNIWETLPNFWTGTIR-PGVVSHKDDIYVVCDIK 473 (557)
T ss_pred ccccceEEEECCC--CCeEeecCCCCccccc-CcEEEECCEEEEEeCCC
Confidence 0112368899987 9999987666 6777 79999999999999965
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=3e-30 Score=255.30 Aligned_cols=199 Identities=18% Similarity=0.236 Sum_probs=164.3
Q ss_pred hhhhhccCCCCCCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEE
Q 020688 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (322)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~ 175 (322)
...++.||+.+++|.++++||.||..|++++++++||++||.+... ..+++++||+.+++|+.+++||. +|..++++
T Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~lp~--~r~~~~~~ 386 (534)
T PHA03098 310 VNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEPPLIF--PRYNPCVV 386 (534)
T ss_pred eccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCCCcCc--CCccceEE
Confidence 3456778899999999999999999999999999999999987443 46789999999999999999988 89999999
Q ss_pred EeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEec
Q 020688 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD 255 (322)
Q Consensus 176 ~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd 255 (322)
+++++|||+||....... .+++++||+.+++|+.++++|.+|.++++++.+++||++||.+....... .-.+++||
T Consensus 387 ~~~~~iYv~GG~~~~~~~--~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~v~~yd 462 (534)
T PHA03098 387 NVNNLIYVIGGISKNDEL--LKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKV--YNIVESYN 462 (534)
T ss_pred EECCEEEEECCcCCCCcc--cceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcc--cceEEEec
Confidence 999999999997544321 68899999999999999999999999999999999999999764321111 12478999
Q ss_pred cccccccccccc--CCCCCcceEEEEeCCEEEEEccccCCC--CceEEeeccc
Q 020688 256 GKALEKAWRTEI--PIPRGGPHRFAGFPHVIYLSLVSSVED--LNFYVIQVPW 304 (322)
Q Consensus 256 ~~~~~~~W~~~~--p~pr~~~~~~~v~~~~iyi~GG~~~e~--~~~~~~q~~~ 304 (322)
+. +++|+... +.||.+ +++++++++||++||...+. .+++.+...-
T Consensus 463 ~~--~~~W~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 463 PV--TNKWTELSSLNFPRIN-ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CC--CCceeeCCCCCccccc-ceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 87 99999865 446888 68899999999999976433 3444444433
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=251.91 Aligned_cols=167 Identities=19% Similarity=0.301 Sum_probs=149.0
Q ss_pred hhhccCCCCCCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEe
Q 020688 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
.+..||+.+++|..+++|+.+|..+++++++++||++||.+.. +++++|||.+++|+.+++|+. +|..++++++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~--~r~~~~~~~~ 361 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLK--PRCNPAVASI 361 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCC--CCcccEEEEE
Confidence 4557888899999999999999999999999999999997532 459999999999999999998 8999999999
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEeccc
Q 020688 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK 257 (322)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~ 257 (322)
+|+|||+||.++. .+.+++|||.+++|+.+++|+.+|..+++++++|+||++||. .++|||.
T Consensus 362 ~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~-------------~e~ydp~ 423 (480)
T PHA02790 362 NNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN-------------AEFYCES 423 (480)
T ss_pred CCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc-------------eEEecCC
Confidence 9999999997532 357899999999999999999999999999999999999983 4689986
Q ss_pred ccccccccccC--CCCCcceEEEEeCCEEEEEcccc
Q 020688 258 ALEKAWRTEIP--IPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 258 ~~~~~W~~~~p--~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
+++|+..++ .||.. +++++++|+||++||.+
T Consensus 424 --~~~W~~~~~m~~~r~~-~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 424 --SNTWTLIDDPIYPRDN-PELIIVDNKLLLIGGFY 456 (480)
T ss_pred --CCcEeEcCCCCCCccc-cEEEEECCEEEEECCcC
Confidence 999997654 46888 69999999999999965
No 7
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=6.1e-29 Score=232.74 Aligned_cols=193 Identities=16% Similarity=0.218 Sum_probs=152.4
Q ss_pred hhhhhhccCCCCCCEEEcCCCC-CCcc---cceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCC---CC
Q 020688 95 LSATFADLPAPDLEWEQMPSAP-VPRL---DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DM 167 (322)
Q Consensus 95 ~~~~~~~~~~~~~~W~~~~~~p-~~R~---~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~---p~ 167 (322)
....++.||+.+++|+++++++ .||. +|++++++++||||||.+.... ++++++||+.+++|+.+++|+. |.
T Consensus 48 ~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~ 126 (341)
T PLN02153 48 IDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPE 126 (341)
T ss_pred eeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCC
Confidence 3445778889899999998764 4543 6888999999999999876554 6789999999999999887732 44
Q ss_pred CceeeEEEEeCCEEEEEecccCCCCC---CCCceEEEEECCCCcEEecCCCC---CCCCCCeEEEECCEEEEEccCCCCC
Q 020688 168 AHSHLGVVSDGRYIYIVSGQYGPQCR---GPTSRTFVLDSETRKWDSIPPLP---SPRYSPATQLWRGRLHVMGGSKENR 241 (322)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~~~~~yD~~t~~W~~~~~~p---~~r~~~~~~~~~~~Lyi~GG~~~~~ 241 (322)
+|..|++++++++|||+||.+..... ...+++++||+++++|+.++++. .+|.++++++++++|||+||.....
T Consensus 127 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 206 (341)
T PLN02153 127 ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSI 206 (341)
T ss_pred CceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccccc
Confidence 89999999999999999998643211 12468999999999999998653 7899999999999999999975321
Q ss_pred C---CCCcceeEeEEecccccccccccc-----cCCCCCcceEEEEeCCEEEEEcccc
Q 020688 242 H---TPGLEHWSIAVKDGKALEKAWRTE-----IPIPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 242 ~---~~~~~~~~i~~yd~~~~~~~W~~~-----~p~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
. ......-++++||+. +++|+.. +|.+|.. |++++++++|||+||..
T Consensus 207 ~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~-~~~~~~~~~iyv~GG~~ 261 (341)
T PLN02153 207 LPGGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSV-FAHAVVGKYIIIFGGEV 261 (341)
T ss_pred ccCCccceecCceEEEEcC--CCcEEeccccCCCCCCcce-eeeEEECCEEEEECccc
Confidence 0 011112357889986 9999975 3667888 89999999999999963
No 8
>PLN02153 epithiospecifier protein
Probab=99.96 E-value=3.3e-28 Score=227.73 Aligned_cols=182 Identities=18% Similarity=0.265 Sum_probs=147.4
Q ss_pred CCCCCEEEcCC----CCCCcccceEEEECCEEEEEeecCCC-CCccceEEEEECCCCceeeCCCCCC-CC-CceeeEEEE
Q 020688 104 APDLEWEQMPS----APVPRLDGAAIQIKNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMPK-DM-AHSHLGVVS 176 (322)
Q Consensus 104 ~~~~~W~~~~~----~p~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~~~-p~-~r~~~~~~~ 176 (322)
+...+|.++.. +|.||..|++++++++|||+||.... ....+++++||+.+++|+.+++++. |. .+..+++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35678999966 78999999999999999999998542 3345789999999999999887753 22 234788999
Q ss_pred eCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCC-----CCCCCCCeEEEECCEEEEEccCCCCCCCCC-cceeE
Q 020688 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-----PSPRYSPATQLWRGRLHVMGGSKENRHTPG-LEHWS 250 (322)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~-----p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~-~~~~~ 250 (322)
++++|||+||.+.... .+++++||+++++|+.++++ |.+|..|++++.+++|||+||.+....... ...-+
T Consensus 84 ~~~~iyv~GG~~~~~~---~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 84 VGTKLYIFGGRDEKRE---FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred ECCEEEEECCCCCCCc---cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 9999999999876554 67999999999999999877 889999999999999999999864322211 11236
Q ss_pred eEEecccccccccccccC-----CCCCcceEEEEeCCEEEEEcccc
Q 020688 251 IAVKDGKALEKAWRTEIP-----IPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 251 i~~yd~~~~~~~W~~~~p-----~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
+++||++ +++|+...+ .+|.+ |++++++++||++||.+
T Consensus 161 v~~yd~~--~~~W~~l~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~ 203 (341)
T PLN02153 161 IEAYNIA--DGKWVQLPDPGENFEKRGG-AGFAVVQGKIWVVYGFA 203 (341)
T ss_pred EEEEECC--CCeEeeCCCCCCCCCCCCc-ceEEEECCeEEEEeccc
Confidence 7889987 999997532 56888 78999999999999854
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.96 E-value=1.2e-28 Score=229.14 Aligned_cols=186 Identities=13% Similarity=0.207 Sum_probs=145.4
Q ss_pred hhhccCCCCCCE----EEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeE
Q 020688 98 TFADLPAPDLEW----EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173 (322)
Q Consensus 98 ~~~~~~~~~~~W----~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~ 173 (322)
.++.||..+++| +.+++||.+|..|++++++++|||+||..... ..+++++||+.+++|+.+++||.+ +|..++
T Consensus 89 ~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~ 166 (323)
T TIGR03548 89 SVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGE-PRVQPV 166 (323)
T ss_pred eEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCC-CCCcce
Confidence 455667767776 78899999999999999999999999975433 368899999999999999988753 689999
Q ss_pred EEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCC---CCC--CCCeE-EEECCEEEEEccCCCCCCCCCc-
Q 020688 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP---SPR--YSPAT-QLWRGRLHVMGGSKENRHTPGL- 246 (322)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p---~~r--~~~~~-~~~~~~Lyi~GG~~~~~~~~~~- 246 (322)
+++++++|||+||.++.. ..++++||+++++|+.+++|+ .|+ .+++. ++.+++|||+||.+.....+..
T Consensus 167 ~~~~~~~iYv~GG~~~~~----~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 242 (323)
T TIGR03548 167 CVKLQNELYVFGGGSNIA----YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVI 242 (323)
T ss_pred EEEECCEEEEEcCCCCcc----ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHh
Confidence 999999999999986543 357899999999999998763 233 34443 4457999999998643211000
Q ss_pred --------------------------ceeEeEEecccccccccccccCC---CCCcceEEEEeCCEEEEEccccC
Q 020688 247 --------------------------EHWSIAVKDGKALEKAWRTEIPI---PRGGPHRFAGFPHVIYLSLVSSV 292 (322)
Q Consensus 247 --------------------------~~~~i~~yd~~~~~~~W~~~~p~---pr~~~~~~~v~~~~iyi~GG~~~ 292 (322)
..-++++||+. +++|+...++ +|.+ +++++++++||++||...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~~r~~-~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 243 DLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVR--TGKWKSIGNSPFFARCG-AALLLTGNNIFSINGELK 314 (323)
T ss_pred hhhhccchhhhhhHHHHhCCCccccCcCceEEEEECC--CCeeeEcccccccccCc-hheEEECCEEEEEecccc
Confidence 01258899987 9999976544 6888 689999999999999643
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=5.2e-28 Score=226.82 Aligned_cols=202 Identities=17% Similarity=0.277 Sum_probs=149.5
Q ss_pred hhhhccCCCCCCEEEcC-CCCCCcccceEE-EECCEEEEEeecCCCC---------------------------------
Q 020688 97 ATFADLPAPDLEWEQMP-SAPVPRLDGAAI-QIKNLFYVFAGYGSLD--------------------------------- 141 (322)
Q Consensus 97 ~~~~~~~~~~~~W~~~~-~~p~~R~~~~~~-~~~~~lyv~GG~~~~~--------------------------------- 141 (322)
..++.||+.+++|++++ ++|.+|..++++ +++++||++||.+...
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDY 164 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHc
Confidence 34667889899999997 456777777776 6899999999985321
Q ss_pred CccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEE--CCCCcEEecCCCCCCC
Q 020688 142 YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD--SETRKWDSIPPLPSPR 219 (322)
Q Consensus 142 ~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD--~~t~~W~~~~~~p~~r 219 (322)
...+++++|||.+++|+.+++||.+ +|..+++++++++|||+||....... ..+++.|| +.+++|+.+++||.+|
T Consensus 165 ~~~~~v~~YDp~t~~W~~~~~~p~~-~r~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~y~~~~~~~~W~~~~~m~~~r 241 (346)
T TIGR03547 165 FWNKNVLSYDPSTNQWRNLGENPFL-GTAGSAIVHKGNKLLLINGEIKPGLR--TAEVKQYLFTGGKLEWNKLPPLPPPK 241 (346)
T ss_pred CccceEEEEECCCCceeECccCCCC-cCCCceEEEECCEEEEEeeeeCCCcc--chheEEEEecCCCceeeecCCCCCCC
Confidence 0136899999999999999999852 68899999999999999998654421 34566665 5778999999998876
Q ss_pred C-------CCeEEEECCEEEEEccCCCCC----------CC--CCcceeEeEEecccccccccccccCC--CCCcceEEE
Q 020688 220 Y-------SPATQLWRGRLHVMGGSKENR----------HT--PGLEHWSIAVKDGKALEKAWRTEIPI--PRGGPHRFA 278 (322)
Q Consensus 220 ~-------~~~~~~~~~~Lyi~GG~~~~~----------~~--~~~~~~~i~~yd~~~~~~~W~~~~p~--pr~~~~~~~ 278 (322)
. ++.+++++++|||+||.+... +. .......+++||+. +++|+...++ +|.. ++++
T Consensus 242 ~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~lp~~~~~-~~~~ 318 (346)
T TIGR03547 242 SSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD--NGKWSKVGKLPQGLAY-GVSV 318 (346)
T ss_pred CCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec--CCcccccCCCCCCcee-eEEE
Confidence 3 444678999999999975321 00 01123568899986 8999987555 5666 6777
Q ss_pred EeCCEEEEEccccCCCCce-EEeeccc
Q 020688 279 GFPHVIYLSLVSSVEDLNF-YVIQVPW 304 (322)
Q Consensus 279 v~~~~iyi~GG~~~e~~~~-~~~q~~~ 304 (322)
+++++||++||.+...... .++|++|
T Consensus 319 ~~~~~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 319 SWNNGVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred EcCCEEEEEeccCCCCCEeeeEEEEEe
Confidence 8999999999976543322 3345554
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=4.1e-28 Score=227.49 Aligned_cols=187 Identities=17% Similarity=0.219 Sum_probs=141.5
Q ss_pred hhccC--CCCCCEEEcCCCC-CCcccceEEEECCEEEEEeecCCCC-----CccceEEEEECCCCceeeCCCCCCCCCce
Q 020688 99 FADLP--APDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170 (322)
Q Consensus 99 ~~~~~--~~~~~W~~~~~~p-~~R~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~~~p~~r~ 170 (322)
++.+| +.+++|.++++|| .+|..+++++++++|||+||.+... ..++++|+||+.+++|+.+++ +.|.+|.
T Consensus 31 ~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~ 109 (346)
T TIGR03547 31 WYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLL 109 (346)
T ss_pred eEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCccc
Confidence 34444 3578999999999 5899999999999999999985322 246789999999999999873 2233677
Q ss_pred eeEEE-EeCCEEEEEecccCCCC-------------------------------CCCCceEEEEECCCCcEEecCCCCC-
Q 020688 171 HLGVV-SDGRYIYIVSGQYGPQC-------------------------------RGPTSRTFVLDSETRKWDSIPPLPS- 217 (322)
Q Consensus 171 ~~~~~-~~~~~iyv~GG~~~~~~-------------------------------~~~~~~~~~yD~~t~~W~~~~~~p~- 217 (322)
.++++ +++++||++||.+.... ....+++++|||.+++|+.+++||.
T Consensus 110 ~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~ 189 (346)
T TIGR03547 110 GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL 189 (346)
T ss_pred ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCC
Confidence 77766 78999999999763210 0013689999999999999999986
Q ss_pred CCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCC--CCC-------cceEEEEeCCEEEEEc
Q 020688 218 PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI--PRG-------GPHRFAGFPHVIYLSL 288 (322)
Q Consensus 218 ~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~--pr~-------~~~~~~v~~~~iyi~G 288 (322)
+|.++++++++++|||+||..... .... ++.+||+++++++|+...++ ||. + |.+++++++||++|
T Consensus 190 ~r~~~~~~~~~~~iyv~GG~~~~~-~~~~---~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~-~~a~~~~~~Iyv~G 264 (346)
T TIGR03547 190 GTAGSAIVHKGNKLLLINGEIKPG-LRTA---EVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAG-AFAGISNGVLLVAG 264 (346)
T ss_pred cCCCceEEEECCEEEEEeeeeCCC-ccch---heEEEEecCCCceeeecCCCCCCCCCccccccE-EeeeEECCEEEEee
Confidence 688999999999999999975332 1222 23345554458899987655 442 3 45778999999999
Q ss_pred ccc
Q 020688 289 VSS 291 (322)
Q Consensus 289 G~~ 291 (322)
|.+
T Consensus 265 G~~ 267 (346)
T TIGR03547 265 GAN 267 (346)
T ss_pred cCC
Confidence 964
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.96 E-value=1.3e-27 Score=222.20 Aligned_cols=171 Identities=18% Similarity=0.277 Sum_probs=141.6
Q ss_pred CCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCce----eeCCCCCCCCCceeeEEEEeCCEEE
Q 020688 107 LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW----VDRFDMPKDMAHSHLGVVSDGRYIY 182 (322)
Q Consensus 107 ~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W----~~~~~~~~p~~r~~~~~~~~~~~iy 182 (322)
.+|..+++||.||..+++++++++||++||.+.... ++++++||+.+++| +.+++||. +|..+++++++++||
T Consensus 51 ~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~--~~~~~~~~~~~~~iY 127 (323)
T TIGR03548 51 LKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIGNLPF--TFENGSACYKDGTLY 127 (323)
T ss_pred eeEEEcccCCccccceEEEEECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCc--CccCceEEEECCEEE
Confidence 479999999999998888999999999999876554 67899999999998 67888887 889999999999999
Q ss_pred EEecccCCCCCCCCceEEEEECCCCcEEecCCCCC-CCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEeccccccc
Q 020688 183 IVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK 261 (322)
Q Consensus 183 v~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~-~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~ 261 (322)
|+||...... .+++++||+.+++|++++++|. +|..+++++++++|||+||.+.... -++++||+. ++
T Consensus 128 v~GG~~~~~~---~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~------~~~~~yd~~--~~ 196 (323)
T TIGR03548 128 VGGGNRNGKP---SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAY------TDGYKYSPK--KN 196 (323)
T ss_pred EEeCcCCCcc---CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccc------cceEEEecC--CC
Confidence 9999754443 6899999999999999999884 8888988999999999999754321 145789987 99
Q ss_pred ccccccC-----CCCC--cceEEEEeCCEEEEEcccc
Q 020688 262 AWRTEIP-----IPRG--GPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 262 ~W~~~~p-----~pr~--~~~~~~v~~~~iyi~GG~~ 291 (322)
+|+...+ .|+. ...++++.+++||++||.+
T Consensus 197 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 197 QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 9998654 3433 3234455689999999976
No 13
>PLN02193 nitrile-specifier protein
Probab=99.96 E-value=2.4e-27 Score=230.61 Aligned_cols=184 Identities=16% Similarity=0.183 Sum_probs=152.9
Q ss_pred hhhhhhccCCCCCCEEEcCCC---CCC-cccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCC-CCCc
Q 020688 95 LSATFADLPAPDLEWEQMPSA---PVP-RLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAH 169 (322)
Q Consensus 95 ~~~~~~~~~~~~~~W~~~~~~---p~~-R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-p~~r 169 (322)
....++.||+.+++|+.++++ |.+ |..|++++++++||||||.+... .++++++||+.+++|+++++++. |.+|
T Consensus 191 ~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R 269 (470)
T PLN02193 191 IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPR 269 (470)
T ss_pred eeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCc
Confidence 334577888989999988643 332 56888999999999999987654 36889999999999999988833 4489
Q ss_pred eeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCC---CCCCCCCCeEEEECCEEEEEccCCCCCCCCCc
Q 020688 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGL 246 (322)
Q Consensus 170 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~---~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~ 246 (322)
..|++++++++|||+||.+.... .+++++||+.+++|+++++ +|.+|.++++++++++||++||.++.. .
T Consensus 270 ~~h~~~~~~~~iYv~GG~~~~~~---~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~--- 342 (470)
T PLN02193 270 SFHSMAADEENVYVFGGVSATAR---LKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-V--- 342 (470)
T ss_pred cceEEEEECCEEEEECCCCCCCC---cceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-c---
Confidence 99999999999999999876554 6889999999999999864 678899999999999999999976432 1
Q ss_pred ceeEeEEeccccccccccccc-----CCCCCcceEEEEeCCEEEEEcccc
Q 020688 247 EHWSIAVKDGKALEKAWRTEI-----PIPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 247 ~~~~i~~yd~~~~~~~W~~~~-----p~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
-++.+||+. +++|+... |.||.. |++++++++|||+||..
T Consensus 343 --~dv~~yD~~--t~~W~~~~~~g~~P~~R~~-~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 343 --DDVHYYDPV--QDKWTQVETFGVRPSERSV-FASAAVGKHIVIFGGEI 387 (470)
T ss_pred --CceEEEECC--CCEEEEeccCCCCCCCcce-eEEEEECCEEEEECCcc
Confidence 256788886 99999753 568888 79999999999999964
No 14
>PLN02193 nitrile-specifier protein
Probab=99.95 E-value=5.2e-27 Score=228.26 Aligned_cols=186 Identities=17% Similarity=0.252 Sum_probs=149.9
Q ss_pred CCCEEEcCC---CCCCcccceEEEECCEEEEEeecCC-CCCccceEEEEECCCCceeeCCCCC-CCC-CceeeEEEEeCC
Q 020688 106 DLEWEQMPS---APVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDNKWVDRFDMP-KDM-AHSHLGVVSDGR 179 (322)
Q Consensus 106 ~~~W~~~~~---~p~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~~W~~~~~~~-~p~-~r~~~~~~~~~~ 179 (322)
.++|.++.+ +|.||..|++++++++|||+||... .....+++++||+.+++|+.++++. .|. +|..++++++++
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~ 229 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS 229 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC
Confidence 379999876 5889999999999999999999753 3334567999999999999877653 222 357889999999
Q ss_pred EEEEEecccCCCCCCCCceEEEEECCCCcEEecCCC---CCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecc
Q 020688 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL---PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDG 256 (322)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~---p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~ 256 (322)
+|||+||.+.... .+++++||+.+++|++++++ |.+|..|++++.+++|||+||.+.....+ ++.+||+
T Consensus 230 ~lYvfGG~~~~~~---~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~-----~~~~yd~ 301 (470)
T PLN02193 230 TLYVFGGRDASRQ---YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLK-----TLDSYNI 301 (470)
T ss_pred EEEEECCCCCCCC---CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcc-----eEEEEEC
Confidence 9999999876554 78999999999999999887 88999999999999999999987644333 5668887
Q ss_pred ccccccccccc-----CCCCCcceEEEEeCCEEEEEccccC-CCCceEEeec
Q 020688 257 KALEKAWRTEI-----PIPRGGPHRFAGFPHVIYLSLVSSV-EDLNFYVIQV 302 (322)
Q Consensus 257 ~~~~~~W~~~~-----p~pr~~~~~~~v~~~~iyi~GG~~~-e~~~~~~~q~ 302 (322)
. +++|+... +.+|.+ |++++++++||++||.+. ...+++.+.+
T Consensus 302 ~--t~~W~~~~~~~~~~~~R~~-~~~~~~~gkiyviGG~~g~~~~dv~~yD~ 350 (470)
T PLN02193 302 V--DKKWFHCSTPGDSFSIRGG-AGLEVVQGKVWVVYGFNGCEVDDVHYYDP 350 (470)
T ss_pred C--CCEEEeCCCCCCCCCCCCC-cEEEEECCcEEEEECCCCCccCceEEEEC
Confidence 6 99999753 356888 799999999999999642 2244555443
No 15
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=206.57 Aligned_cols=199 Identities=18% Similarity=0.249 Sum_probs=161.5
Q ss_pred cCCChhhhhhhhhhccCCCCCCEEEc---CCCCCCcccceEEEECCEEEEEeecCC-CCCccceEEEEECCCCceeeCCC
Q 020688 87 KGQDAERFLSATFADLPAPDLEWEQM---PSAPVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDNKWVDRFD 162 (322)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~W~~~---~~~p~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~~W~~~~~ 162 (322)
.+.+.....+..++.||+++++|.+. .-.|.+|.+|++|++++.+|||||+.+ ..++.++++++|..|.+|+.+..
T Consensus 95 GGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~T 174 (392)
T KOG4693|consen 95 GGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHT 174 (392)
T ss_pred cCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhc
Confidence 34455455677788999999999876 456888999999999999999999854 45678899999999999999765
Q ss_pred CCC-CCCceeeEEEEeCCEEEEEecccCCCCCC------CCceEEEEECCCCcEEecCC---CCCCCCCCeEEEECCEEE
Q 020688 163 MPK-DMAHSHLGVVSDGRYIYIVSGQYGPQCRG------PTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLH 232 (322)
Q Consensus 163 ~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~------~~~~~~~yD~~t~~W~~~~~---~p~~r~~~~~~~~~~~Ly 232 (322)
... |.-|..|+++++++.+|||||+....... ..+.+.++|.+|..|.+.++ .|..|..|++.+.+++||
T Consensus 175 kg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y 254 (392)
T KOG4693|consen 175 KGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMY 254 (392)
T ss_pred cCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEE
Confidence 544 34689999999999999999985432211 14678899999999999863 578999999999999999
Q ss_pred EEccCCCCCCCCCcceeEeEEecccccccccccc-----cCCCCCcceEEEEeCCEEEEEcccc
Q 020688 233 VMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE-----IPIPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 233 i~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~-----~p~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
+|||+++.-.. +--++.+|||+ +..|..+ .|.+|.. +++++.+++||+|||.+
T Consensus 255 ~FGGYng~ln~---HfndLy~FdP~--t~~W~~I~~~Gk~P~aRRR-qC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 255 MFGGYNGTLNV---HFNDLYCFDPK--TSMWSVISVRGKYPSARRR-QCSVVSGGKVYLFGGTS 312 (392)
T ss_pred Eecccchhhhh---hhcceeecccc--cchheeeeccCCCCCcccc-eeEEEECCEEEEecCCC
Confidence 99999874322 22245588987 9999974 5778888 79999999999999965
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.95 E-value=6.1e-27 Score=231.70 Aligned_cols=177 Identities=19% Similarity=0.257 Sum_probs=148.9
Q ss_pred cCCCCCCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEE
Q 020688 102 LPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYI 181 (322)
Q Consensus 102 ~~~~~~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~i 181 (322)
|+..+.+|..++++|. +..+++++++++||++||.+......+++++||+.+++|..+++|+. +|..+++++++++|
T Consensus 269 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~R~~~~~~~~~~~l 345 (534)
T PHA03098 269 NYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY--PRKNPGVTVFNNRI 345 (534)
T ss_pred cchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc--ccccceEEEECCEE
Confidence 4455778888876653 44568889999999999997666556789999999999999999987 89999999999999
Q ss_pred EEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEeccccccc
Q 020688 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK 261 (322)
Q Consensus 182 yv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~ 261 (322)
|++||.++... .+++++||+.+++|+.++++|.+|.++++++++++||++||....... .-++++||+. ++
T Consensus 346 yv~GG~~~~~~---~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~----~~~v~~yd~~--t~ 416 (534)
T PHA03098 346 YVIGGIYNSIS---LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL----LKTVECFSLN--TN 416 (534)
T ss_pred EEEeCCCCCEe---cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcc----cceEEEEeCC--CC
Confidence 99999875443 688999999999999999999999999999999999999996432211 2257889986 99
Q ss_pred ccccccC--CCCCcceEEEEeCCEEEEEcccc
Q 020688 262 AWRTEIP--IPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 262 ~W~~~~p--~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
+|+...+ .+|.+ |++++.+++||++||.+
T Consensus 417 ~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 417 KWSKGSPLPISHYG-GCAIYHDGKIYVIGGIS 447 (534)
T ss_pred eeeecCCCCccccC-ceEEEECCEEEEECCcc
Confidence 9998654 46777 78999999999999965
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=1.4e-26 Score=219.47 Aligned_cols=190 Identities=17% Similarity=0.254 Sum_probs=145.1
Q ss_pred hhhhccCCCCCCEEEcCC-CCCCcccceEEE-ECCEEEEEeecCCCC---------------------------------
Q 020688 97 ATFADLPAPDLEWEQMPS-APVPRLDGAAIQ-IKNLFYVFAGYGSLD--------------------------------- 141 (322)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~-~p~~R~~~~~~~-~~~~lyv~GG~~~~~--------------------------------- 141 (322)
..++.||+.+++|+.+++ +|.+|.+|++++ .+++|||+||.+...
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY 185 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence 456778898999999985 466777788777 799999999975310
Q ss_pred CccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceE--EEEECCCCcEEecCCCCCCC
Q 020688 142 YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT--FVLDSETRKWDSIPPLPSPR 219 (322)
Q Consensus 142 ~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~--~~yD~~t~~W~~~~~~p~~r 219 (322)
...+++++||+.+++|+.++++|.+ +|.++++++++++|||+||....... ..++ ..||+++++|+.+++||.+|
T Consensus 186 ~~~~~v~~YD~~t~~W~~~~~~p~~-~~~~~a~v~~~~~iYv~GG~~~~~~~--~~~~~~~~~~~~~~~W~~~~~~p~~~ 262 (376)
T PRK14131 186 FFNKEVLSYDPSTNQWKNAGESPFL-GTAGSAVVIKGNKLWLINGEIKPGLR--TDAVKQGKFTGNNLKWQKLPDLPPAP 262 (376)
T ss_pred CcCceEEEEECCCCeeeECCcCCCC-CCCcceEEEECCEEEEEeeeECCCcC--ChhheEEEecCCCcceeecCCCCCCC
Confidence 1246799999999999999988853 68888999999999999998654422 3334 35678999999999998877
Q ss_pred CC--------CeEEEECCEEEEEccCCCCC----------CC--CCcceeEeEEeccccccccccccc--CCCCCcceEE
Q 020688 220 YS--------PATQLWRGRLHVMGGSKENR----------HT--PGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRF 277 (322)
Q Consensus 220 ~~--------~~~~~~~~~Lyi~GG~~~~~----------~~--~~~~~~~i~~yd~~~~~~~W~~~~--p~pr~~~~~~ 277 (322)
.+ +.+++.+++|||+||.+... +. .....+.+++||+. +++|+... |.||.+ +++
T Consensus 263 ~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~lp~~r~~-~~a 339 (376)
T PRK14131 263 GGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV--NGKWQKVGELPQGLAY-GVS 339 (376)
T ss_pred cCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec--CCcccccCcCCCCccc-eEE
Confidence 43 22567899999999975321 00 11234678899986 89999764 456887 688
Q ss_pred EEeCCEEEEEccccC
Q 020688 278 AGFPHVIYLSLVSSV 292 (322)
Q Consensus 278 ~v~~~~iyi~GG~~~ 292 (322)
++++++||++||...
T Consensus 340 v~~~~~iyv~GG~~~ 354 (376)
T PRK14131 340 VSWNNGVLLIGGETA 354 (376)
T ss_pred EEeCCEEEEEcCCCC
Confidence 889999999999653
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=8.3e-27 Score=227.41 Aligned_cols=205 Identities=17% Similarity=0.216 Sum_probs=156.5
Q ss_pred HHHHHhhccCCCCCCCcccccccccceeccCceeecCCcccchhhhhhhhhhhhcc--cCCChhhhhhhhhhccCCCCCC
Q 020688 31 IADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDK--KGQDAERFLSATFADLPAPDLE 108 (322)
Q Consensus 31 ~~~~~~~~s~~~~~~~s~~~~~~s~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 108 (322)
+.++++..++.... ...+...++++.++.|..+|++...+..........++. .+.. .. ..+..||+.+++
T Consensus 270 ~~~~lyviGG~~~~---~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~---~~-~sve~ydp~~n~ 342 (480)
T PHA02790 270 VGEVVYLIGGWMNN---EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLP---NP-TSVERWFHGDAA 342 (480)
T ss_pred ECCEEEEEcCCCCC---CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcC---CC-CceEEEECCCCe
Confidence 45666666654221 233456678888888999988743222211111111111 1111 11 235567788999
Q ss_pred EEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEeccc
Q 020688 109 WEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188 (322)
Q Consensus 109 W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 188 (322)
|..+++||.+|..+++++++++|||+||.++. .+.+++|||.+++|+.+++|+. +|..+++++++++|||+||.
T Consensus 343 W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~--~r~~~~~~~~~~~IYv~GG~- 416 (480)
T PHA02790 343 WVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYY--PHYKSCALVFGRRLFLVGRN- 416 (480)
T ss_pred EEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCC--ccccceEEEECCEEEEECCc-
Confidence 99999999999999999999999999998543 2569999999999999999998 89999999999999999972
Q ss_pred CCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEeccccccccccc
Q 020688 189 GPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT 265 (322)
Q Consensus 189 ~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~ 265 (322)
+++|||++++|+.+++||.+|..+++++++|+||++||.++..+. -.+++|||. +++|+.
T Consensus 417 ----------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~-----~~ve~Yd~~--~~~W~~ 476 (480)
T PHA02790 417 ----------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYI-----DTIEVYNNR--TYSWNI 476 (480)
T ss_pred ----------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCccc-----ceEEEEECC--CCeEEe
Confidence 588999999999999999999999999999999999998643322 268899987 999974
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.94 E-value=1.7e-25 Score=212.05 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=140.5
Q ss_pred hhccCCC--CCCEEEcCCCC-CCcccceEEEECCEEEEEeecCC-C----CCccceEEEEECCCCceeeCCCCCCCCCce
Q 020688 99 FADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGS-L----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170 (322)
Q Consensus 99 ~~~~~~~--~~~W~~~~~~p-~~R~~~~~~~~~~~lyv~GG~~~-~----~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~ 170 (322)
++.+|.. +++|.+++++| .+|..+++++++++|||+||... . ...++++++||+.+++|+.++++ .|.++.
T Consensus 52 ~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~ 130 (376)
T PRK14131 52 WYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLA 130 (376)
T ss_pred EEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCccc
Confidence 3344443 57999999998 58999999999999999999864 1 12467899999999999998863 233677
Q ss_pred eeEEEE-eCCEEEEEecccCCCC-------------------------------CCCCceEEEEECCCCcEEecCCCCC-
Q 020688 171 HLGVVS-DGRYIYIVSGQYGPQC-------------------------------RGPTSRTFVLDSETRKWDSIPPLPS- 217 (322)
Q Consensus 171 ~~~~~~-~~~~iyv~GG~~~~~~-------------------------------~~~~~~~~~yD~~t~~W~~~~~~p~- 217 (322)
.|++++ .+++|||+||...... ....+++++||+.+++|+.++++|.
T Consensus 131 ~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~ 210 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL 210 (376)
T ss_pred ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCC
Confidence 777776 8999999999753100 0014689999999999999999996
Q ss_pred CCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCC--CCCc------c-eEEEEeCCEEEEEc
Q 020688 218 PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI--PRGG------P-HRFAGFPHVIYLSL 288 (322)
Q Consensus 218 ~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~--pr~~------~-~~~~v~~~~iyi~G 288 (322)
+|.++++++++++|||+||..... ....+.|.. .||++ +++|....++ ||.+ + +.+++++++||++|
T Consensus 211 ~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~~-~~~~~--~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~G 286 (376)
T PRK14131 211 GTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQG-KFTGN--NLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAG 286 (376)
T ss_pred CCCcceEEEECCEEEEEeeeECCC-cCChhheEE-EecCC--CcceeecCCCCCCCcCCcCCccceEeceeECCEEEEee
Confidence 788889999999999999964322 233444443 45664 8999986554 4432 1 23567899999999
Q ss_pred ccc
Q 020688 289 VSS 291 (322)
Q Consensus 289 G~~ 291 (322)
|.+
T Consensus 287 G~~ 289 (376)
T PRK14131 287 GAN 289 (376)
T ss_pred ccC
Confidence 964
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=188.26 Aligned_cols=187 Identities=20% Similarity=0.233 Sum_probs=146.1
Q ss_pred ccCCCCCCEEEcCC-------------CCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCC-C
Q 020688 101 DLPAPDLEWEQMPS-------------APVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-D 166 (322)
Q Consensus 101 ~~~~~~~~W~~~~~-------------~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-p 166 (322)
.++..+-+|.++++ .|-.|++|+++.+++++||.||+++..-..+.+++|||++++|.+..--.. |
T Consensus 48 ~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vP 127 (392)
T KOG4693|consen 48 VLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVP 127 (392)
T ss_pred EeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecC
Confidence 34555778998865 133499999999999999999998866667889999999999987432211 4
Q ss_pred CCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecC---CCCCCCCCCeEEEECCEEEEEccCCCCC--
Q 020688 167 MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR-- 241 (322)
Q Consensus 167 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~---~~p~~r~~~~~~~~~~~Lyi~GG~~~~~-- 241 (322)
.+|.+|++|++++.+|||||+..+.... ++++.++|..|.+|..+. .-|.=|..|++.++++.+|||||...+.
T Consensus 128 gaRDGHsAcV~gn~MyiFGGye~~a~~F-S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gp 206 (392)
T KOG4693|consen 128 GARDGHSACVWGNQMYIFGGYEEDAQRF-SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGP 206 (392)
T ss_pred CccCCceeeEECcEEEEecChHHHHHhh-hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCC
Confidence 4999999999999999999987654433 689999999999999984 3345577899999999999999986432
Q ss_pred CCCC--cceeEeEEeccccccccccccc-----CCCCCcceEEEEeCCEEEEEcccc
Q 020688 242 HTPG--LEHWSIAVKDGKALEKAWRTEI-----PIPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 242 ~~~~--~~~~~i~~yd~~~~~~~W~~~~-----p~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
+... ..+-.+..+|.+ ++.|...+ |-.|.. |++.+.+++||+|||+.
T Consensus 207 fHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~GRRS-HS~fvYng~~Y~FGGYn 260 (392)
T KOG4693|consen 207 FHSIHEQYCDTIMALDLA--TGAWTRTPENTMKPGGRRS-HSTFVYNGKMYMFGGYN 260 (392)
T ss_pred ccchhhhhcceeEEEecc--ccccccCCCCCcCCCcccc-cceEEEcceEEEecccc
Confidence 2222 222346667765 99999653 345777 89999999999999976
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.91 E-value=2.8e-23 Score=202.08 Aligned_cols=185 Identities=18% Similarity=0.291 Sum_probs=156.3
Q ss_pred hhhccCCCCCCEEEc---CCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCC-CCCceeeE
Q 020688 98 TFADLPAPDLEWEQM---PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLG 173 (322)
Q Consensus 98 ~~~~~~~~~~~W~~~---~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-p~~r~~~~ 173 (322)
.++.+|..+..|... ...|.+|++|.++.++++||+|||.+......++++.||+.|++|+.+.+... |.+|.+|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 467778878889765 45678899999999999999999997544447889999999999999877665 67999999
Q ss_pred EEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecC---CCCCCCCCCeEEEECCEEEEEccCC-CCCCCCCccee
Q 020688 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSK-ENRHTPGLEHW 249 (322)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~---~~p~~r~~~~~~~~~~~Lyi~GG~~-~~~~~~~~~~~ 249 (322)
+++++++|||+||.+.... ..+++++||+++.+|.++. ..|.||++|++++++++++++||.. +..+.++++..
T Consensus 169 ~~~~g~~l~vfGG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~l 246 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGD--SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHIL 246 (482)
T ss_pred EEEECCEEEEECCccCccc--ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEee
Confidence 9999999999999987763 2799999999999999983 6788999999999999999999987 66666765555
Q ss_pred EeEEecccccccccccc-----cCCCCCcceEEEEeCCEEEEEccccC
Q 020688 250 SIAVKDGKALEKAWRTE-----IPIPRGGPHRFAGFPHVIYLSLVSSV 292 (322)
Q Consensus 250 ~i~~yd~~~~~~~W~~~-----~p~pr~~~~~~~v~~~~iyi~GG~~~ 292 (322)
++. +.+|... .|.||++ |.+++.+.+++|+||...
T Consensus 247 dl~-------~~~W~~~~~~g~~p~~R~~-h~~~~~~~~~~l~gG~~~ 286 (482)
T KOG0379|consen 247 DLS-------TWEWKLLPTGGDLPSPRSG-HSLTVSGDHLLLFGGGTD 286 (482)
T ss_pred ecc-------cceeeeccccCCCCCCcce-eeeEEECCEEEEEcCCcc
Confidence 443 7889843 5678999 788899999999999665
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=2.9e-23 Score=188.82 Aligned_cols=214 Identities=19% Similarity=0.251 Sum_probs=161.7
Q ss_pred hhhhhhccCCCCCCEEEc--CCCCCCcccceEEEEC-CEEEEEeecC-----CCCCccceEEEEECCCCceeeCCCCCCC
Q 020688 95 LSATFADLPAPDLEWEQM--PSAPVPRLDGAAIQIK-NLFYVFAGYG-----SLDYVHSHVDVYNFTDNKWVDRFDMPKD 166 (322)
Q Consensus 95 ~~~~~~~~~~~~~~W~~~--~~~p~~R~~~~~~~~~-~~lyv~GG~~-----~~~~~~~~v~~yd~~t~~W~~~~~~~~p 166 (322)
+...++.|+..+++|+++ ++.|.||..|+++++. +.+|+|||.- ...+-..++|+||..+++|+++.....|
T Consensus 96 vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 96 VYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred EeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 445567888999999998 5568899999999884 8999999962 1223457899999999999999877778
Q ss_pred CCceeeEEEEeCCEEEEEecccCCC-CCCCCceEEEEECCCCcEEecCC---CCCCCCCCeEEEE-CCEEEEEccCCCCC
Q 020688 167 MAHSHLGVVSDGRYIYIVSGQYGPQ-CRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLW-RGRLHVMGGSKENR 241 (322)
Q Consensus 167 ~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~yD~~t~~W~~~~~---~p~~r~~~~~~~~-~~~Lyi~GG~~~~~ 241 (322)
.||++|-|++...+|++|||+.... .....+++++||+.|=+|+++.+ .|.||+++++.+- +|.|||+||++...
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR 255 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh
Confidence 8999999999999999999985432 22237899999999999999943 4889999999988 99999999986432
Q ss_pred C-------CCCcceeEeEEecccc---ccccccc-----ccCCCCCcceEEEEe-CCEEEEEcc-ccCC----------C
Q 020688 242 H-------TPGLEHWSIAVKDGKA---LEKAWRT-----EIPIPRGGPHRFAGF-PHVIYLSLV-SSVE----------D 294 (322)
Q Consensus 242 ~-------~~~~~~~~i~~yd~~~---~~~~W~~-----~~p~pr~~~~~~~v~-~~~iyi~GG-~~~e----------~ 294 (322)
. .-..+.|. .+|.. +.-+|+. ..|.||+++ ++++. +++-|+||| .+++ .
T Consensus 256 ~kK~~dKG~~hsDmf~---L~p~~~~~dKw~W~kvkp~g~kPspRsgf-sv~va~n~kal~FGGV~D~eeeeEsl~g~F~ 331 (521)
T KOG1230|consen 256 VKKDVDKGTRHSDMFL---LKPEDGREDKWVWTKVKPSGVKPSPRSGF-SVAVAKNHKALFFGGVCDLEEEEESLSGEFF 331 (521)
T ss_pred hhhhhhcCceeeeeee---ecCCcCCCcceeEeeccCCCCCCCCCCce-eEEEecCCceEEecceecccccchhhhhhhh
Confidence 1 11223443 34431 1235655 367899995 66666 669999999 4422 3
Q ss_pred CceEEeeccccccceeEE
Q 020688 295 LNFYVIQVPWEYNFKFRI 312 (322)
Q Consensus 295 ~~~~~~q~~~~~~~~~~~ 312 (322)
.|+|.+|+...-||.--|
T Consensus 332 NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 332 NDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred hhhhheecccchhhHhhh
Confidence 478889987776665433
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=183.92 Aligned_cols=192 Identities=21% Similarity=0.301 Sum_probs=147.0
Q ss_pred hhhhhhhhhccCCCCC--CEEEcCCCCCCcccceEEEE--CCEEEEEeec--CC-CCCccceEEEEECCCCceeeCCCCC
Q 020688 92 ERFLSATFADLPAPDL--EWEQMPSAPVPRLDGAAIQI--KNLFYVFAGY--GS-LDYVHSHVDVYNFTDNKWVDRFDMP 164 (322)
Q Consensus 92 ~~~~~~~~~~~~~~~~--~W~~~~~~p~~R~~~~~~~~--~~~lyv~GG~--~~-~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (322)
+..+...+..++.... .=+..-+.|.||.+.++++. .+.|++|||. ++ ...+.++++.||..+++|+.+.+.+
T Consensus 38 e~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn 117 (521)
T KOG1230|consen 38 EADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPN 117 (521)
T ss_pred hHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCC
Confidence 3344445555555332 12233466889999998876 5689999995 33 3357899999999999999988777
Q ss_pred CCCCceeeEEEEeC-CEEEEEecccCCCCC---CCCceEEEEECCCCcEEec--CCCCCCCCCCeEEEECCEEEEEccCC
Q 020688 165 KDMAHSHLGVVSDG-RYIYIVSGQYGPQCR---GPTSRTFVLDSETRKWDSI--PPLPSPRYSPATQLWRGRLHVMGGSK 238 (322)
Q Consensus 165 ~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~---~~~~~~~~yD~~t~~W~~~--~~~p~~r~~~~~~~~~~~Lyi~GG~~ 238 (322)
.|.||+.|.++++. +.+|++||......+ -+..++|.||..+++|+++ +.-|.||++|.++++..+|+||||+.
T Consensus 118 ~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFh 197 (521)
T KOG1230|consen 118 APPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFH 197 (521)
T ss_pred CcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEccee
Confidence 77799999999985 899999997543221 1357999999999999999 46799999999999999999999985
Q ss_pred CC----CCCCCcceeEeEEecccccccccccc-----cCCCCCcceEEEEe-CCEEEEEcccc
Q 020688 239 EN----RHTPGLEHWSIAVKDGKALEKAWRTE-----IPIPRGGPHRFAGF-PHVIYLSLVSS 291 (322)
Q Consensus 239 ~~----~~~~~~~~~~i~~yd~~~~~~~W~~~-----~p~pr~~~~~~~v~-~~~iyi~GG~~ 291 (322)
.. .|.|+++ +||.. +-+|... .|.||++| ++.+. .|.||+.||++
T Consensus 198 d~nr~y~YyNDvy-----~FdLd--tykW~Klepsga~PtpRSGc-q~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 198 DSNRDYIYYNDVY-----AFDLD--TYKWSKLEPSGAGPTPRSGC-QFSVTPQGGIVVYGGYS 252 (521)
T ss_pred cCCCceEEeeeeE-----EEecc--ceeeeeccCCCCCCCCCCcc-eEEecCCCcEEEEcchh
Confidence 43 3445444 44443 8899863 47899995 88888 99999999987
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.89 E-value=6.3e-22 Score=192.69 Aligned_cols=188 Identities=21% Similarity=0.331 Sum_probs=148.2
Q ss_pred CCCCCCcccceEEEECCEEEEEeecCCCCCccc-eEEEEECCCCceeeCCCCCC-CCCceeeEEEEeCCEEEEEecccCC
Q 020688 113 PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVSDGRYIYIVSGQYGP 190 (322)
Q Consensus 113 ~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~t~~W~~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~ 190 (322)
...|.+|..|+++.+++++|||||........+ +++++|..+..|.....-.. |.+|.+|++++++++||++||.+..
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 346788999999999999999999865554233 59999999999987543322 5699999999999999999999863
Q ss_pred CCCCCCceEEEEECCCCcEEecC---CCCCCCCCCeEEEECCEEEEEccCCCCC-CCCCcceeEeEEecccccccccccc
Q 020688 191 QCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTE 266 (322)
Q Consensus 191 ~~~~~~~~~~~yD~~t~~W~~~~---~~p~~r~~~~~~~~~~~Lyi~GG~~~~~-~~~~~~~~~i~~yd~~~~~~~W~~~ 266 (322)
.. ..++++.||+.|++|..+. ..|.+|.+|++++.+++||||||..... ..+ ++.+||.. +.+|.+.
T Consensus 135 ~~--~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~n-----dl~i~d~~--~~~W~~~ 205 (482)
T KOG0379|consen 135 YR--NLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLN-----DLHIYDLE--TSTWSEL 205 (482)
T ss_pred CC--ChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccccee-----eeeeeccc--cccceec
Confidence 22 2789999999999999984 4688999999999999999999987654 334 45567765 8889973
Q ss_pred -----cCCCCCcceEEEEeCCEEEEEcccc-CCCCceEEeeccccccceeE
Q 020688 267 -----IPIPRGGPHRFAGFPHVIYLSLVSS-VEDLNFYVIQVPWEYNFKFR 311 (322)
Q Consensus 267 -----~p~pr~~~~~~~v~~~~iyi~GG~~-~e~~~~~~~q~~~~~~~~~~ 311 (322)
.|.||.+ |++++++++++++||.. .+.|--.++.+... .+.|.
T Consensus 206 ~~~g~~P~pR~g-H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~-~~~W~ 254 (482)
T KOG0379|consen 206 DTQGEAPSPRYG-HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLS-TWEWK 254 (482)
T ss_pred ccCCCCCCCCCC-ceEEEECCeEEEEeccccCCceecceEeeecc-cceee
Confidence 6779999 99999999999999977 55453333444333 14444
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=4.2e-19 Score=165.40 Aligned_cols=225 Identities=16% Similarity=0.207 Sum_probs=161.9
Q ss_pred cceeccCceeecCCcccchhhhhhhhhhhhcccCCChhhhhhhhhhccCCCCCCEEEc---CCCCCCcccceEEEECCEE
Q 020688 55 NWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQM---PSAPVPRLDGAAIQIKNLF 131 (322)
Q Consensus 55 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~---~~~p~~R~~~~~~~~~~~l 131 (322)
+|..-...+-++|... .-++....++..+--+...+..... +-.|+..+++|..- .+.|.+-..|+.+..+.+|
T Consensus 18 rWrrV~~~tGPvPrpR--HGHRAVaikELiviFGGGNEGiiDE-LHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtri 94 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPR--HGHRAVAIKELIVIFGGGNEGIIDE-LHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRI 94 (830)
T ss_pred ceEEEecccCCCCCcc--ccchheeeeeeEEEecCCcccchhh-hhhhccccceeecchhcCCCCCchhhcceEecCceE
Confidence 5644334444455431 1224333344333333344444444 44567779999654 6778888889999999999
Q ss_pred EEEeecCCCCCccceEEEEECCCCceeeCCCCC-----CCCCceeeEEEEeCCEEEEEecccCCCC------CCCCceEE
Q 020688 132 YVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-----KDMAHSHLGVVSDGRYIYIVSGQYGPQC------RGPTSRTF 200 (322)
Q Consensus 132 yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~-----~p~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~~~ 200 (322)
|+|||..+-+.+.+++|.+....-+|+++.+.+ .|.||-+|+.+++++|-|+|||...+.. .-.+++++
T Consensus 95 lvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY 174 (830)
T KOG4152|consen 95 LVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLY 174 (830)
T ss_pred EEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceE
Confidence 999999887777888888877778888875532 2779999999999999999999753321 11267888
Q ss_pred EEECCCC----cEEec---CCCCCCCCCCeEEEE------CCEEEEEccCCCCCCCCCcceeEeEEecccccccccccc-
Q 020688 201 VLDSETR----KWDSI---PPLPSPRYSPATQLW------RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE- 266 (322)
Q Consensus 201 ~yD~~t~----~W~~~---~~~p~~r~~~~~~~~------~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~- 266 (322)
.+++.-. .|+.. ..+|.+|..|.++++ ..++||+||.++-+ .. |.|.+ |. ++..|.++
T Consensus 175 ~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-Lg--DLW~L---dl--~Tl~W~kp~ 246 (830)
T KOG4152|consen 175 ILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-LG--DLWTL---DL--DTLTWNKPS 246 (830)
T ss_pred EEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-cc--ceeEE---ec--ceeeccccc
Confidence 8887744 48876 478999999999987 35899999998765 23 34533 22 38899974
Q ss_pred ----cCCCCCcceEEEEeCCEEEEEcccc
Q 020688 267 ----IPIPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 267 ----~p~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
.|+||+- |++.+++++||+|||.-
T Consensus 247 ~~G~~PlPRSL-Hsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 247 LSGVAPLPRSL-HSATTIGNKMYVFGGWV 274 (830)
T ss_pred ccCCCCCCccc-ccceeecceeEEeccee
Confidence 7999999 99999999999999954
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=1.6e-18 Score=161.52 Aligned_cols=202 Identities=20% Similarity=0.297 Sum_probs=147.5
Q ss_pred hhcccCCChhhhhhhhhhccCCCCCCEEEcC-------CCCCCcccceEEEECCEEEEEeecCC--------CCCccceE
Q 020688 83 VIDKKGQDAERFLSATFADLPAPDLEWEQMP-------SAPVPRLDGAAIQIKNLFYVFAGYGS--------LDYVHSHV 147 (322)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-------~~p~~R~~~~~~~~~~~lyv~GG~~~--------~~~~~~~v 147 (322)
.....+.......+..++..-...-+|+++. ++|.||.+|+...+++|.|+|||... --++++|+
T Consensus 94 ilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDl 173 (830)
T KOG4152|consen 94 ILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDL 173 (830)
T ss_pred EEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcce
Confidence 3344555555556666767666566788873 35788999999999999999999621 12478899
Q ss_pred EEEECCCCc----eeeCC-CCCCCCCceeeEEEEe------CCEEEEEecccCCCCCCCCceEEEEECCCCcEEecC---
Q 020688 148 DVYNFTDNK----WVDRF-DMPKDMAHSHLGVVSD------GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP--- 213 (322)
Q Consensus 148 ~~yd~~t~~----W~~~~-~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~--- 213 (322)
|+++..-.. |...- .-..|.+|..|.++++ ..++||+||-.+.. +.++|.+|.+|-+|.+..
T Consensus 174 Y~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~~G 249 (830)
T KOG4152|consen 174 YILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSLSG 249 (830)
T ss_pred EEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeecccccccC
Confidence 998876433 87632 2223559999999998 35899999988765 789999999999999873
Q ss_pred CCCCCCCCCeEEEECCEEEEEccCCCC-----CCCCCccee----EeEEecccccccccccc---------cCCCCCcce
Q 020688 214 PLPSPRYSPATQLWRGRLHVMGGSKEN-----RHTPGLEHW----SIAVKDGKALEKAWRTE---------IPIPRGGPH 275 (322)
Q Consensus 214 ~~p~~r~~~~~~~~~~~Lyi~GG~~~~-----~~~~~~~~~----~i~~yd~~~~~~~W~~~---------~p~pr~~~~ 275 (322)
-.|.||+-|++.++++++|||||.--. ........| ++.|.+.+ +..|+.. .|-+|++ |
T Consensus 250 ~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld--t~~W~tl~~d~~ed~tiPR~RAG-H 326 (830)
T KOG4152|consen 250 VAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD--TMAWETLLMDTLEDNTIPRARAG-H 326 (830)
T ss_pred CCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeec--chheeeeeecccccccccccccc-c
Confidence 457789999999999999999996210 001111112 23445543 8899852 3456888 9
Q ss_pred EEEEeCCEEEEEcccc
Q 020688 276 RFAGFPHVIYLSLVSS 291 (322)
Q Consensus 276 ~~~v~~~~iyi~GG~~ 291 (322)
+++.++.+|||-.|+|
T Consensus 327 CAvAigtRlYiWSGRD 342 (830)
T KOG4152|consen 327 CAVAIGTRLYIWSGRD 342 (830)
T ss_pred eeEEeccEEEEEeccc
Confidence 9999999999999977
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.50 E-value=4e-13 Score=121.40 Aligned_cols=130 Identities=20% Similarity=0.287 Sum_probs=97.5
Q ss_pred CCCEEEcCCCC-CCcccceEEEECCEEEEEeecCCC----CCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCC-
Q 020688 106 DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSL----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR- 179 (322)
Q Consensus 106 ~~~W~~~~~~p-~~R~~~~~~~~~~~lyv~GG~~~~----~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~- 179 (322)
...|++++.+| .+|-...+++++++||||||.... -...+++|+|||.+++|.++.... |..-..++++.+++
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~~~~~~~ 147 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGASTFSLNGT 147 (381)
T ss_pred CCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccccceeEecCCc
Confidence 57899999998 458888889999999999997432 236789999999999999876543 33456777777877
Q ss_pred EEEEEecccCCCC-------------------------------CCCCceEEEEECCCCcEEecCCCCC-CCCCCeEEEE
Q 020688 180 YIYIVSGQYGPQC-------------------------------RGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLW 227 (322)
Q Consensus 180 ~iyv~GG~~~~~~-------------------------------~~~~~~~~~yD~~t~~W~~~~~~p~-~r~~~~~~~~ 227 (322)
+||++||.+.... ..-...+..|||++++|+.+...|- ++++.+.+.-
T Consensus 148 ~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~ 227 (381)
T COG3055 148 KIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIK 227 (381)
T ss_pred eEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeec
Confidence 9999999753210 0114578899999999999976654 6666555555
Q ss_pred CCEEEEEcc
Q 020688 228 RGRLHVMGG 236 (322)
Q Consensus 228 ~~~Lyi~GG 236 (322)
+++|.++-|
T Consensus 228 ~n~~~lInG 236 (381)
T COG3055 228 GNKLTLING 236 (381)
T ss_pred CCeEEEEcc
Confidence 666777666
No 28
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.44 E-value=6.1e-14 Score=131.01 Aligned_cols=192 Identities=16% Similarity=0.206 Sum_probs=135.9
Q ss_pred CCCCEEEcCCC----------CCCcccceEEEECC--EEEEEeecCCCCCccceEEEEECCCCceeeCCCCC-CCCCcee
Q 020688 105 PDLEWEQMPSA----------PVPRLDGAAIQIKN--LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSH 171 (322)
Q Consensus 105 ~~~~W~~~~~~----------p~~R~~~~~~~~~~--~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~-~p~~r~~ 171 (322)
.+.+|.+.+.. |..|.+|.++...+ -||+.||+++... +.+.|.|+...+.|+.+.--. .|.+|++
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 36789877432 45689999997754 8999999999887 677999999999999875443 3559999
Q ss_pred eEEEEeCC--EEEEEecccCCCCC---CCCceEEEEECCCCcEEecC------CCCCCCCCCeEEEECCE--EEEEccCC
Q 020688 172 LGVVSDGR--YIYIVSGQYGPQCR---GPTSRTFVLDSETRKWDSIP------PLPSPRYSPATQLWRGR--LHVMGGSK 238 (322)
Q Consensus 172 ~~~~~~~~--~iyv~GG~~~~~~~---~~~~~~~~yD~~t~~W~~~~------~~p~~r~~~~~~~~~~~--Lyi~GG~~ 238 (322)
|-++.... |||++|-+-+.... .-.+++|+||..++.|.-+. .-|...+.|.+++.+++ |||+||+.
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 99998755 99999976443221 12579999999999999884 34777889999999888 99999985
Q ss_pred CCCCCCCcceeEeEEecccccccccccc------------cCCCCCcceEEEE--eCCEEEEEcccc--CCCCceEEeec
Q 020688 239 ENRHTPGLEHWSIAVKDGKALEKAWRTE------------IPIPRGGPHRFAG--FPHVIYLSLVSS--VEDLNFYVIQV 302 (322)
Q Consensus 239 ~~~~~~~~~~~~i~~yd~~~~~~~W~~~------------~p~pr~~~~~~~v--~~~~iyi~GG~~--~e~~~~~~~q~ 302 (322)
-+...+.-. -+..||.+ ...|..- --..|.+ |.|-. -++++|++||.. .|..-++-+|+
T Consensus 396 ~~~~e~~f~--GLYaf~~~--~~~w~~l~e~~~~~~~vvE~~~sR~g-hcmE~~~~n~~ly~fggq~s~~El~L~f~y~I 470 (723)
T KOG2437|consen 396 LTCNEPQFS--GLYAFNCQ--CQTWKLLREDSCNAGPVVEDIQSRIG-HCMEFHSKNRCLYVFGGQRSKTELNLFFSYDI 470 (723)
T ss_pred ccCCCcccc--ceEEEecC--CccHHHHHHHHhhcCcchhHHHHHHH-HHHHhcCCCCeEEeccCcccceEEeehhccee
Confidence 433211111 23455654 7788741 1123666 54444 488899999944 44333334544
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.42 E-value=2.3e-12 Score=116.58 Aligned_cols=173 Identities=18% Similarity=0.253 Sum_probs=127.5
Q ss_pred EEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECC--CCceeeCCCCCCCCCceeeEEEEeCCEEEEEecc
Q 020688 110 EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187 (322)
Q Consensus 110 ~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 187 (322)
+++|++|++--+.+.+.+++.+||-=|..+. +.+..|.+ ...|++++..|.+ +|....+++++++|||+||.
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~ 101 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGY 101 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeecc
Confidence 3568888888777888889999997664332 34555554 4679999999876 89999999999999999997
Q ss_pred cCCCC--CCCCceEEEEECCCCcEEecCC-CCCCCCCCeEEEECC-EEEEEccCCCCCC---------------------
Q 020688 188 YGPQC--RGPTSRTFVLDSETRKWDSIPP-LPSPRYSPATQLWRG-RLHVMGGSKENRH--------------------- 242 (322)
Q Consensus 188 ~~~~~--~~~~~~~~~yD~~t~~W~~~~~-~p~~r~~~~~~~~~~-~Lyi~GG~~~~~~--------------------- 242 (322)
..... ....+++++|||.+++|+++.. .|....++.++..++ +||++||++...+
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 54432 2236899999999999999964 466677888888888 9999999864210
Q ss_pred ------CCCccee--EeEEecccccccccccccC---CCCCcceEEEEeCCEEEEEcccc
Q 020688 243 ------TPGLEHW--SIAVKDGKALEKAWRTEIP---IPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 243 ------~~~~~~~--~i~~yd~~~~~~~W~~~~p---~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
.+....| ++..|||. +++|+...- .|+++ ++.+.-++++.++-|.-
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~--~n~W~~~G~~pf~~~aG-sa~~~~~n~~~lInGEi 238 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPS--TNQWRNLGENPFYGNAG-SAVVIKGNKLTLINGEI 238 (381)
T ss_pred HHHhCCCHHHhcccccccccccc--cchhhhcCcCcccCccC-cceeecCCeEEEEccee
Confidence 1111222 34578876 999997654 35777 45555688899998843
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.34 E-value=2.6e-12 Score=85.75 Aligned_cols=50 Identities=28% Similarity=0.519 Sum_probs=44.9
Q ss_pred CceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCC
Q 020688 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR 219 (322)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r 219 (322)
||.+|++++++++|||+||...... ..+++++||++|++|+++++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~--~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGK--YSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCC--ccccEEEEcCCCCcEEECCCCCCCC
Confidence 5899999999999999999988422 2789999999999999999999987
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.33 E-value=3.8e-12 Score=85.00 Aligned_cols=50 Identities=28% Similarity=0.540 Sum_probs=45.4
Q ss_pred CcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCc
Q 020688 118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAH 169 (322)
Q Consensus 118 ~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r 169 (322)
||.+|++++++++|||+||........+++++||+++++|+++++||. ||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~--pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT--PR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC--CC
Confidence 689999999999999999997755568899999999999999999998 55
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.17 E-value=4.3e-11 Score=78.65 Aligned_cols=47 Identities=34% Similarity=0.592 Sum_probs=42.8
Q ss_pred CcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCC
Q 020688 118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (322)
Q Consensus 118 ~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (322)
||..|++++++++|||+||.+......+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999999999999886667899999999999999999886
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.11 E-value=9.2e-11 Score=77.06 Aligned_cols=47 Identities=36% Similarity=0.685 Sum_probs=41.3
Q ss_pred CceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCC
Q 020688 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (322)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p 216 (322)
||.++++++++++|||+||.++... .++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~--~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQ--PTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSS--BEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCc--eeeeEEEEeCCCCEEEEcCCCC
Confidence 5899999999999999999998332 2899999999999999999886
No 34
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.06 E-value=4.7e-10 Score=74.45 Aligned_cols=47 Identities=28% Similarity=0.515 Sum_probs=41.9
Q ss_pred CcccceEEEECCEEEEEeec--CCCCCccceEEEEECCCCceeeCCCCC
Q 020688 118 PRLDGAAIQIKNLFYVFAGY--GSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (322)
Q Consensus 118 ~R~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (322)
||..|++++++++|||+||+ +......+++++||+++++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 455566889999999999999998875
No 35
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.03 E-value=3.1e-10 Score=75.29 Aligned_cols=47 Identities=30% Similarity=0.544 Sum_probs=32.1
Q ss_pred CcccceEEEE-CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCC
Q 020688 118 PRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (322)
Q Consensus 118 ~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (322)
||.+|+++.+ +++||||||.+.....++++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6999999998 5899999999887667899999999999999998776
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.01 E-value=9.5e-10 Score=72.97 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=42.2
Q ss_pred CCEEEEEeecC-CCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEe
Q 020688 128 KNLFYVFAGYG-SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (322)
Q Consensus 128 ~~~lyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~ 177 (322)
+++||||||.+ .....++++|+||+.+++|+++.++|. +|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEEC
Confidence 58999999998 456678999999999999999988776 9999999874
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.95 E-value=1.6e-09 Score=71.88 Aligned_cols=49 Identities=24% Similarity=0.488 Sum_probs=41.5
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEE
Q 020688 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227 (322)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~ 227 (322)
+++|||+||.+... ....+++++||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 58999999998321 12279999999999999999999999999998864
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.95 E-value=2.2e-09 Score=71.22 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=40.0
Q ss_pred CceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCC
Q 020688 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (322)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p 216 (322)
||.+|++++++++|||+||..........+++++||+++++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 5899999999999999999921111123789999999999999998775
No 39
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.88 E-value=1.5e-09 Score=102.07 Aligned_cols=134 Identities=15% Similarity=0.189 Sum_probs=102.0
Q ss_pred CCCceeeCCCCC--------CCCCceeeEEEEeCC--EEEEEecccCCCCCCCCceEEEEECCCCcEEecC---CCCCCC
Q 020688 153 TDNKWVDRFDMP--------KDMAHSHLGVVSDGR--YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPR 219 (322)
Q Consensus 153 ~t~~W~~~~~~~--------~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~---~~p~~r 219 (322)
-+..|+++++.. .|..|.+|.++...+ +||+.||.++-.. ..++|.|....++|+.+. ..|..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~---l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD---LADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh---HHHHHhhcCCcceeEEeecCCCCCcch
Confidence 456798865432 366899999999865 9999999999887 899999999999999984 478999
Q ss_pred CCCeEEEECC--EEEEEccCCCC----CCCCCcceeEeEEeccccccccccccc--------CCCCCcceEEEEeCCE--
Q 020688 220 YSPATQLWRG--RLHVMGGSKEN----RHTPGLEHWSIAVKDGKALEKAWRTEI--------PIPRGGPHRFAGFPHV-- 283 (322)
Q Consensus 220 ~~~~~~~~~~--~Lyi~GG~~~~----~~~~~~~~~~i~~yd~~~~~~~W~~~~--------p~pr~~~~~~~v~~~~-- 283 (322)
.+|.++.... +||++|-+-+. ......+.| +||.. ++.|.... |-.-.. |.|+|.+.+
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW---~FDi~--~~~W~~ls~dt~~dGGP~~vfD-HqM~Vd~~k~~ 387 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFW---RFDID--TNTWMLLSEDTAADGGPKLVFD-HQMCVDSEKHM 387 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceE---EEecC--CceeEEecccccccCCcceeec-ceeeEecCcce
Confidence 9999997655 99999976332 223344555 66765 89998631 222333 899999888
Q ss_pred EEEEccccCCCC
Q 020688 284 IYLSLVSSVEDL 295 (322)
Q Consensus 284 iyi~GG~~~e~~ 295 (322)
||++||...+..
T Consensus 388 iyVfGGr~~~~~ 399 (723)
T KOG2437|consen 388 IYVFGGRILTCN 399 (723)
T ss_pred EEEecCeeccCC
Confidence 999999775544
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.87 E-value=2.9e-09 Score=70.58 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=31.0
Q ss_pred CceeeEEEEe-CCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCC
Q 020688 168 AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (322)
Q Consensus 168 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p 216 (322)
||..|+++.+ +++|||+||.+.... ..+++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~--~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGS--PLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TE--E---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCc--ccCCEEEEECCCCEEEECCCCC
Confidence 5899999998 589999999988742 2799999999999999998877
No 41
>smart00612 Kelch Kelch domain.
Probab=98.86 E-value=4.3e-09 Score=68.56 Aligned_cols=47 Identities=36% Similarity=0.641 Sum_probs=41.1
Q ss_pred EEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECC
Q 020688 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG 229 (322)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~ 229 (322)
+|||+||..+... .+++++||+.+++|+.+++||.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~---~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQR---LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCce---eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4899999876333 7899999999999999999999999999888764
No 42
>smart00612 Kelch Kelch domain.
Probab=98.80 E-value=9.6e-09 Score=66.89 Aligned_cols=47 Identities=30% Similarity=0.426 Sum_probs=40.6
Q ss_pred EEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCC
Q 020688 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR 179 (322)
Q Consensus 130 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~ 179 (322)
+||++||.+.. ...+++++||+.+++|+.+++|+. +|..++++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT--PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC--ccccceEEEeCC
Confidence 48999998653 347789999999999999999998 899999988764
No 43
>PLN02772 guanylate kinase
Probab=98.78 E-value=4.7e-08 Score=91.68 Aligned_cols=86 Identities=16% Similarity=0.262 Sum_probs=68.3
Q ss_pred CCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCC-CCCceeeEEEEe-CCEEEEEecccCCCCC
Q 020688 116 PVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVSD-GRYIYIVSGQYGPQCR 193 (322)
Q Consensus 116 p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 193 (322)
..|+..++++++++++||+||.++.....+.+++||+.+++|....-+.. |.+|.+|+++++ +++|+|+++.....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 34788999999999999999987765457889999999999997554433 669999999998 68999998654332
Q ss_pred CCCceEEEEECCC
Q 020688 194 GPTSRTFVLDSET 206 (322)
Q Consensus 194 ~~~~~~~~yD~~t 206 (322)
.++|-+...|
T Consensus 100 ---~~~w~l~~~t 109 (398)
T PLN02772 100 ---DSIWFLEVDT 109 (398)
T ss_pred ---cceEEEEcCC
Confidence 4677776655
No 44
>PLN02772 guanylate kinase
Probab=98.65 E-value=1.8e-07 Score=87.73 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=65.5
Q ss_pred CceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecC---CCCCCCCCCeEEEE-CCEEEEEccCCCCCCC
Q 020688 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLW-RGRLHVMGGSKENRHT 243 (322)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~---~~p~~r~~~~~~~~-~~~Lyi~GG~~~~~~~ 243 (322)
++.+++++++++++||+||.+..... .+.+++||+.|.+|.... ..|.||.+|++|++ +++|+|+++...
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~~--~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~---- 97 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNTL--SIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA---- 97 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCccc--cceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC----
Confidence 78899999999999999998775422 689999999999999874 67899999999988 689999987543
Q ss_pred CCcceeEeE
Q 020688 244 PGLEHWSIA 252 (322)
Q Consensus 244 ~~~~~~~i~ 252 (322)
++.+.|-++
T Consensus 98 ~~~~~w~l~ 106 (398)
T PLN02772 98 PDDSIWFLE 106 (398)
T ss_pred CccceEEEE
Confidence 235667665
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.63 E-value=8.2e-08 Score=61.39 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=35.6
Q ss_pred CCCCcccceEEEECCEEEEEeecCC-CCCccceEEEEECCC
Q 020688 115 APVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTD 154 (322)
Q Consensus 115 ~p~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t 154 (322)
+|.||..|++++++++|||+||.+. .....+++|+||..+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999984 666789999999875
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.33 E-value=1.3e-06 Score=55.84 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=32.7
Q ss_pred CCCceeeEEEEeCCEEEEEecccC-CCCCCCCceEEEEECCC
Q 020688 166 DMAHSHLGVVSDGRYIYIVSGQYG-PQCRGPTSRTFVLDSET 206 (322)
Q Consensus 166 p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~~yD~~t 206 (322)
|.+|..|++++++++|||+||.++ ... ..+++++||+.+
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~--~~~d~~~l~l~s 41 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNS--YSNDLYVLDLPS 41 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCC--EECcEEEEECCC
Confidence 348999999999999999999985 222 278999999876
No 47
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.07 E-value=0.00065 Score=60.51 Aligned_cols=171 Identities=12% Similarity=0.074 Sum_probs=95.7
Q ss_pred EcCCCCCCcccceEEEE--CC--EEEEEeecCC----C---------CCccceEEEEECCCCceee--CCCCCCCCCcee
Q 020688 111 QMPSAPVPRLDGAAIQI--KN--LFYVFAGYGS----L---------DYVHSHVDVYNFTDNKWVD--RFDMPKDMAHSH 171 (322)
Q Consensus 111 ~~~~~p~~R~~~~~~~~--~~--~lyv~GG~~~----~---------~~~~~~v~~yd~~t~~W~~--~~~~~~p~~r~~ 171 (322)
.+.+.|.+|++|++.++ .+ -+.+|||+.- . -.+...|+.+|++-.-.+. ++.+.. .-+.
T Consensus 80 LvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~d--G~SF 157 (337)
T PF03089_consen 80 LVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQD--GQSF 157 (337)
T ss_pred ecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcC--CeEE
Confidence 34788999999999776 22 3778999620 0 1133457778887776654 555555 6788
Q ss_pred eEEEEeCCEEEEEecccCCCCCCCCceEEEEECC---CCcEEecCCCCCCCCCCeEE---EECCEEEEEccCCCCCCCCC
Q 020688 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE---TRKWDSIPPLPSPRYSPATQ---LWRGRLHVMGGSKENRHTPG 245 (322)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~---t~~W~~~~~~p~~r~~~~~~---~~~~~Lyi~GG~~~~~~~~~ 245 (322)
|.+..-++.+|++||+.-..... ...+++...+ -.-.-...-++...+-.++. +-.+...|+||+..+.. ..
T Consensus 158 Hvslar~D~VYilGGHsl~sd~R-pp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQ-KR 235 (337)
T PF03089_consen 158 HVSLARNDCVYILGGHSLESDSR-PPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQ-KR 235 (337)
T ss_pred EEEEecCceEEEEccEEccCCCC-CCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccce-ee
Confidence 88888999999999986543321 2344443221 11122212222222211121 22367888999865431 12
Q ss_pred cceeEeEEeccc------ccccccccccCCCCCcceEEEEeCCEEEEE
Q 020688 246 LEHWSIAVKDGK------ALEKAWRTEIPIPRGGPHRFAGFPHVIYLS 287 (322)
Q Consensus 246 ~~~~~i~~yd~~------~~~~~W~~~~p~pr~~~~~~~v~~~~iyi~ 287 (322)
+.+-.+ ..|.+ .+.-+|+......|..| +..+-+|.++|.
T Consensus 236 m~C~~V-~Ldd~~I~ie~~E~P~Wt~dI~hSrtWF-Ggs~G~G~~Li~ 281 (337)
T PF03089_consen 236 MECNTV-SLDDDGIHIEEREPPEWTGDIKHSRTWF-GGSMGKGSALIG 281 (337)
T ss_pred eeeeEE-EEeCCceEeccCCCCCCCCCcCcCcccc-ccccCCceEEEE
Confidence 222111 11111 13557888777778875 555556665553
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.06 E-value=0.00068 Score=59.75 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=105.2
Q ss_pred hhhccCCCCCCEEEcCCCCCCcc--cc--eEEEECC-----EEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCC
Q 020688 98 TFADLPAPDLEWEQMPSAPVPRL--DG--AAIQIKN-----LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA 168 (322)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~--~~--~~~~~~~-----~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~ 168 (322)
.+...+|.|.+|..+++.+.++. .. ....++. ||..+....... ....+++|+..+++|+.+...+.. .
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~-~ 92 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPH-H 92 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCC-c
Confidence 35567888999999976554321 11 1112222 555554432111 234689999999999998743321 1
Q ss_pred ceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEe-cCCCCCCCC----CCeEEEECCEEEEEccCCCCCCC
Q 020688 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS-IPPLPSPRY----SPATQLWRGRLHVMGGSKENRHT 243 (322)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~-~~~~p~~r~----~~~~~~~~~~Lyi~GG~~~~~~~ 243 (322)
......+.++|.||-+........ ...+..||..+.+|.. + ++|..+. ...++.++|+|.++..... .
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~~~---~~~IvsFDl~~E~f~~~i-~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~---~ 165 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKTNP---DYFIVSFDVSSERFKEFI-PLPCGNSDSVDYLSLINYKGKLAVLKQKKD---T 165 (230)
T ss_pred cccCCeEEECCEEEEEEEECCCCC---cEEEEEEEcccceEeeee-ecCccccccccceEEEEECCEEEEEEecCC---C
Confidence 111225678999998874332111 1269999999999995 5 3343322 3456788899998876432 1
Q ss_pred CCcceeEeEEecccccccccccccCC-----CCCc--ce-EEEEeCCEEEEEcc
Q 020688 244 PGLEHWSIAVKDGKALEKAWRTEIPI-----PRGG--PH-RFAGFPHVIYLSLV 289 (322)
Q Consensus 244 ~~~~~~~i~~yd~~~~~~~W~~~~p~-----pr~~--~~-~~~v~~~~iyi~GG 289 (322)
...+.|.++-|+ .++|++...+ ++.. .. ..+.-+++|++..+
T Consensus 166 ~~~~IWvl~d~~----~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 166 NNFDLWVLNDAG----KQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred CcEEEEEECCCC----CCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 348899776443 5569974222 2221 11 23344788888764
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.97 E-value=0.00012 Score=65.01 Aligned_cols=126 Identities=13% Similarity=0.155 Sum_probs=80.2
Q ss_pred hccCCCCCCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCC----CceeeCC-CCCCCCCceeeEE
Q 020688 100 ADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDRF-DMPKDMAHSHLGV 174 (322)
Q Consensus 100 ~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~-~~~~p~~r~~~~~ 174 (322)
..||+.+++++.+....-.-...++..-++++.+.||..+. ...+..|++.+ ..|.+.. .|.. +|-..++
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~--~RWYpT~ 123 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQS--GRWYPTA 123 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccC--CCccccc
Confidence 35778889998875432222222223347899999997542 24577888865 6798765 4777 8988888
Q ss_pred EEe-CCEEEEEecccCCCCCCCCceEEEEECCC-----CcEEecC----CCCCCCCCCeEEEECCEEEEEccC
Q 020688 175 VSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET-----RKWDSIP----PLPSPRYSPATQLWRGRLHVMGGS 237 (322)
Q Consensus 175 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~yD~~t-----~~W~~~~----~~p~~r~~~~~~~~~~~Lyi~GG~ 237 (322)
..+ +|+++|+||.... ..|.+++.. ..|.-+. ..+..-+-+....-+|+||+++..
T Consensus 124 ~~L~DG~vlIvGG~~~~-------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNP-------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred eECCCCCEEEEeCcCCC-------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 887 7899999998632 234444322 1232222 123344445556679999999884
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.67 E-value=0.001 Score=59.10 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=61.7
Q ss_pred EEEEECCCCceeeCCCCCCCCCceeeEEEE-eCCEEEEEecccCCCCCCCCceEEEEECCC----CcEEecC-CCCCCCC
Q 020688 147 VDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET----RKWDSIP-PLPSPRY 220 (322)
Q Consensus 147 v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t----~~W~~~~-~~p~~r~ 220 (322)
-..||+.+++++.+.... --.+.+-+. -+|++.+.||... + ...+..|++.+ ..|.+.+ .|..+|.
T Consensus 48 s~~yD~~tn~~rpl~v~t---d~FCSgg~~L~dG~ll~tGG~~~-G----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQT---DTFCSGGAFLPDGRLLQTGGDND-G----NKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEeccCCC---CCcccCcCCCCCCCEEEeCCCCc-c----ccceEEEecCCCCCCCCceECcccccCCCc
Confidence 466999999998765332 222322233 3889999999755 2 35677888875 6798886 5899999
Q ss_pred CCeEEEE-CCEEEEEccCCC
Q 020688 221 SPATQLW-RGRLHVMGGSKE 239 (322)
Q Consensus 221 ~~~~~~~-~~~Lyi~GG~~~ 239 (322)
.++++.+ +|+++|+||...
T Consensus 120 YpT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred cccceECCCCCEEEEeCcCC
Confidence 8888755 789999999863
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.31 E-value=0.027 Score=49.55 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=80.0
Q ss_pred ceEEEEECCCCceeeCCCCCCC---CCceeeEEEEe----CCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKD---MAHSHLGVVSD----GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS 217 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p---~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~ 217 (322)
..+.++||.|++|..+++.+.+ ..+...+.... +=||..+........ ...+++|+..++.|+.+...+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~---~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRN---QSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCC---CccEEEEEeCCCCccccccCCC
Confidence 3589999999999998765431 01111122111 124555543221111 3578999999999999864332
Q ss_pred C-CCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCC--CC---cceEEEEeCCEEEEEccc
Q 020688 218 P-RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIP--RG---GPHRFAGFPHVIYLSLVS 290 (322)
Q Consensus 218 ~-r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~p--r~---~~~~~~v~~~~iyi~GG~ 290 (322)
. ......+.++|.||-+...... ...+.|..||.. +.+|....|+| +. .....+.++|+|.++...
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~-----~~~~~IvsFDl~--~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~ 162 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKT-----NPDYFIVSFDVS--SERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQK 162 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCC-----CCcEEEEEEEcc--cceEeeeeecCccccccccceEEEEECCEEEEEEec
Confidence 1 1112267789999988743211 111367788876 88888533333 21 113567779999888653
No 52
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.30 E-value=0.0071 Score=54.07 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=70.4
Q ss_pred EEEeecCCCCCccceEEEEECCCCc----ee-------eCCCCCCCCCceeeEEEEe----CCEEEEEecccCCCC----
Q 020688 132 YVFAGYGSLDYVHSHVDVYNFTDNK----WV-------DRFDMPKDMAHSHLGVVSD----GRYIYIVSGQYGPQC---- 192 (322)
Q Consensus 132 yv~GG~~~~~~~~~~v~~yd~~t~~----W~-------~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~---- 192 (322)
.+-||+..+....+.+|+....... -+ .+.+.|. +|++|++.++ .....+|||+..-..
T Consensus 42 lIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 42 LIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred EecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 3568888888878888887654332 11 1334555 9999999987 234677898743110
Q ss_pred -------CCCCceEEEEECCCCcEE--ecCCCCCCCCCCeEEEECCEEEEEccCCCCC
Q 020688 193 -------RGPTSRTFVLDSETRKWD--SIPPLPSPRYSPATQLWRGRLHVMGGSKENR 241 (322)
Q Consensus 193 -------~~~~~~~~~yD~~t~~W~--~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~ 241 (322)
......++..|++-.-.+ .++.+....+.|.+..-++.+|++||..-..
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~s 177 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLES 177 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccC
Confidence 011345667777655443 3456666677788888899999999986543
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.81 E-value=0.12 Score=48.61 Aligned_cols=127 Identities=23% Similarity=0.307 Sum_probs=78.4
Q ss_pred EEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCC--cceeEeE
Q 020688 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPG--LEHWSIA 252 (322)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~--~~~~~i~ 252 (322)
++.+.+|+.++.. ....+||++|..=...|.++.+.....++.++++||++........... ...+++.
T Consensus 73 al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 73 ALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred EecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence 3358899988543 3478999999988888888888877878888999999987643221111 1145555
Q ss_pred Eeccc----cccc--ccccccCCC--CCc------ceEEEEe-CCEEEE-EccccCCCCceEEeecccc----cccee
Q 020688 253 VKDGK----ALEK--AWRTEIPIP--RGG------PHRFAGF-PHVIYL-SLVSSVEDLNFYVIQVPWE----YNFKF 310 (322)
Q Consensus 253 ~yd~~----~~~~--~W~~~~p~p--r~~------~~~~~v~-~~~iyi-~GG~~~e~~~~~~~q~~~~----~~~~~ 310 (322)
.|++. .... .|+..++.| +.. ..+-+++ +..|+| .-|...-.|.|.+..-.|. |..+|
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceecCc
Confidence 56531 1233 455544333 111 2355566 777888 5544233677777665665 55555
No 54
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.40 E-value=0.074 Score=48.43 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=69.0
Q ss_pred EEEeecCCCCC-ccceEEEEECCCCceeeCCCCCCCCCceeeEEEEe-CCEEEEEecccCCCCCCCCceEEEEECCCCcE
Q 020688 132 YVFAGYGSLDY-VHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW 209 (322)
Q Consensus 132 yv~GG~~~~~~-~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W 209 (322)
||-|-++..+. ....+..||+.+.+|.....--. -.-..+... +++|||.|-..-... ....+-.||.++.+|
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~---G~V~~l~~~~~~~Llv~G~ft~~~~--~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS---GTVTDLQWASNNQLLVGGNFTLNGT--NSSNLATYDFKNQTW 76 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce---EEEEEEEEecCCEEEEEEeeEECCC--CceeEEEEecCCCee
Confidence 44444544332 23568999999999998654321 222333333 788888876554441 146789999999999
Q ss_pred EecCC-----CCCCCCCCeEEE-ECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccc
Q 020688 210 DSIPP-----LPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE 266 (322)
Q Consensus 210 ~~~~~-----~p~~r~~~~~~~-~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~ 266 (322)
+.++. +|.+........ ..+.+++.|... .... .+..|| ..+|...
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~--~g~~-----~l~~~d----Gs~W~~i 128 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA--NGST-----FLMKYD----GSSWSSI 128 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEeceec--CCCc-----eEEEEc----CCceEec
Confidence 99865 233332111111 234677777641 1111 345666 5678764
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.34 E-value=0.094 Score=49.24 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=67.3
Q ss_pred hhccCCCCCCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCcc----ceEEEE--E--------CCCCceeeCCCCC
Q 020688 99 FADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVH----SHVDVY--N--------FTDNKWVDRFDMP 164 (322)
Q Consensus 99 ~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~----~~v~~y--d--------~~t~~W~~~~~~~ 164 (322)
...||..+..-..++.++.+.....++.++++||++.......... ...+.+ + ...-.|+.+++.|
T Consensus 88 t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PP 167 (342)
T PF07893_consen 88 TLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPP 167 (342)
T ss_pred eEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCCC
Confidence 3456777777777777777766667777899999998763221100 034444 3 2233577777755
Q ss_pred CCCCce-----eeEEEEe-CCEEEEE-ecccCCCCCCCCceEEEEECCCCcEEecCCC
Q 020688 165 KDMAHS-----HLGVVSD-GRYIYIV-SGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (322)
Q Consensus 165 ~p~~r~-----~~~~~~~-~~~iyv~-GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~ 215 (322)
...... -.+-+++ +..|+|- -|.. .-.+.||+.+.+|+++..-
T Consensus 168 f~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 168 FVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred ccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccce
Confidence 521111 2344445 7789884 2211 2379999999999999743
No 56
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.53 E-value=0.34 Score=44.12 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=68.0
Q ss_pred hhhhhhccCCCCCCEEEcCCCCCCcccceEEEE-CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCC---CCCCce
Q 020688 95 LSATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP---KDMAHS 170 (322)
Q Consensus 95 ~~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~---~p~~r~ 170 (322)
-+..++.||....+|..+..--.. .-..+.-. +++||+.|-..-.......+-.||.++++|+.+.... .|.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 355678899989999988654211 11222223 7788888866444422345889999999998876621 121333
Q ss_pred eeEEEE-eCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCC
Q 020688 171 HLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 171 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~ 214 (322)
...... ....+++.|.. ... ..-+..|| -.+|..+..
T Consensus 93 a~~~~~~d~~~~~~aG~~-~~g----~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRS-ANG----STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEecee-cCC----CceEEEEc--CCceEeccc
Confidence 332222 24567777765 222 35677885 457999864
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.52 E-value=1 Score=42.85 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=76.2
Q ss_pred eEEEECCEEEEEeecCCCCCccceEEEEECCCCc--eeeCCCCCC------CCCceeeEEEEeCCEEEEEecccCCCCCC
Q 020688 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPK------DMAHSHLGVVSDGRYIYIVSGQYGPQCRG 194 (322)
Q Consensus 123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 194 (322)
+.++.+++||+.+.. ..+++||..+.+ |+.-..-.. +.++...+.++.+++||+.+.
T Consensus 64 sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------- 128 (394)
T PRK11138 64 HPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------- 128 (394)
T ss_pred ccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC--------
Confidence 335679999997642 358899987655 875322100 001233445678899997532
Q ss_pred CCceEEEEECCCC--cEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCC--
Q 020688 195 PTSRTFVLDSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIP-- 270 (322)
Q Consensus 195 ~~~~~~~yD~~t~--~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~p-- 270 (322)
...+.++|.+|. .|+.-.+ .+. ..+.++.++++|+..+. . .+..+|.+..+..|+.....|
T Consensus 129 -~g~l~ald~~tG~~~W~~~~~--~~~-~ssP~v~~~~v~v~~~~------g-----~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 129 -KGQVYALNAEDGEVAWQTKVA--GEA-LSRPVVSDGLVLVHTSN------G-----MLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred -CCEEEEEECCCCCCcccccCC--Cce-ecCCEEECCEEEEECCC------C-----EEEEEEccCCCEeeeecCCCCcc
Confidence 346899998876 5876432 111 12235668888875431 1 345666654456788654332
Q ss_pred --CCcceEEEEeCCEEEEEc
Q 020688 271 --RGGPHRFAGFPHVIYLSL 288 (322)
Q Consensus 271 --r~~~~~~~v~~~~iyi~G 288 (322)
+.. .+-++.++.+|+..
T Consensus 194 ~~~~~-~sP~v~~~~v~~~~ 212 (394)
T PRK11138 194 TLRGE-SAPATAFGGAIVGG 212 (394)
T ss_pred cccCC-CCCEEECCEEEEEc
Confidence 222 23344566666644
No 58
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.11 E-value=2.5 Score=40.62 Aligned_cols=152 Identities=9% Similarity=0.074 Sum_probs=75.0
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeE
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~ 224 (322)
.+++++|..+.+.+++..... .-........+++|+......+ ...++.+|..+.+++++.... .......
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~--~~~~~~~spDg~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt~~~-~~~~~~~ 337 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPA--IDTEPFWGKDGRTLYFTSDRGG------KPQIYKVNVNGGRAERVTFVG-NYNARPR 337 (430)
T ss_pred ceEEEEECCCCCeEEcccCCC--CcCCeEECCCCCEEEEEECCCC------CceEEEEECCCCCEEEeecCC-CCccceE
Confidence 469999999998887765332 1122222234556665532211 347899999998888774211 1111122
Q ss_pred EE-ECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCcceEEEEeCCEEEEEccccCCCCceEEeecc
Q 020688 225 QL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRFAGFPHVIYLSLVSSVEDLNFYVIQVP 303 (322)
Q Consensus 225 ~~-~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~~~~iyi~GG~~~e~~~~~~~q~~ 303 (322)
.. .++.|++.....+ .+.+..+|.. +.+.+......... .....-+|+.+++.........++.+.
T Consensus 338 ~Spdg~~i~~~~~~~~--------~~~l~~~dl~--tg~~~~lt~~~~~~-~p~~spdg~~i~~~~~~~g~~~l~~~~-- 404 (430)
T PRK00178 338 LSADGKTLVMVHRQDG--------NFHVAAQDLQ--RGSVRILTDTSLDE-SPSVAPNGTMLIYATRQQGRGVLMLVS-- 404 (430)
T ss_pred ECCCCCEEEEEEccCC--------ceEEEEEECC--CCCEEEccCCCCCC-CceECCCCCEEEEEEecCCceEEEEEE--
Confidence 22 2344554432211 2345566654 44444332222211 112223666666654333333344433
Q ss_pred ccccceeEEEecCCC
Q 020688 304 WEYNFKFRITIPDHE 318 (322)
Q Consensus 304 ~~~~~~~~~~~~~~~ 318 (322)
.+-+...+++.|+++
T Consensus 405 ~~g~~~~~l~~~~g~ 419 (430)
T PRK00178 405 INGRVRLPLPTAQGE 419 (430)
T ss_pred CCCCceEECcCCCCC
Confidence 344556666666665
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.08 E-value=2 Score=37.15 Aligned_cols=135 Identities=21% Similarity=0.302 Sum_probs=79.9
Q ss_pred EEECCEEEEEeecCCCCCccceEEEEECCCCc--eeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEE
Q 020688 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (322)
Q Consensus 125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y 202 (322)
+..++.+|+..+ ...++++|+.+.+ |+.-. +. +......+.++.||+..+ ...+.++
T Consensus 33 ~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~--~~---~~~~~~~~~~~~v~v~~~---------~~~l~~~ 91 (238)
T PF13360_consen 33 VPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL--PG---PISGAPVVDGGRVYVGTS---------DGSLYAL 91 (238)
T ss_dssp EEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC--SS---CGGSGEEEETTEEEEEET---------TSEEEEE
T ss_pred EEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec--cc---cccceeeecccccccccc---------eeeeEec
Confidence 347889988842 3569999997776 66533 32 111224778999998862 3479999
Q ss_pred ECCCC--cEE-ecCCCCCC--CCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCcc---
Q 020688 203 DSETR--KWD-SIPPLPSP--RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP--- 274 (322)
Q Consensus 203 D~~t~--~W~-~~~~~p~~--r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~--- 274 (322)
|.++. .|+ .....+.. +......+.++.+|+.... . .+.++|++.....|+.....++...
T Consensus 92 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g-----~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 160 (238)
T PF13360_consen 92 DAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS------G-----KLVALDPKTGKLLWKYPVGEPRGSSPIS 160 (238)
T ss_dssp ETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC------S-----EEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred ccCCcceeeeeccccccccccccccCceEecCEEEEEecc------C-----cEEEEecCCCcEEEEeecCCCCCCccee
Confidence 98776 598 45332222 2334445557777776541 1 4556776544557887655554321
Q ss_pred ------eEEEEeCCEEEEEcccc
Q 020688 275 ------HRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 275 ------~~~~v~~~~iyi~GG~~ 291 (322)
....+.++.+|+..+..
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 161 SFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp EETTEEEEEECCTTEEEEECCTS
T ss_pred eecccccceEEECCEEEEEcCCC
Confidence 23344467888887644
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.64 E-value=2.6 Score=40.16 Aligned_cols=127 Identities=15% Similarity=0.219 Sum_probs=73.5
Q ss_pred EEECCEEEEEeecCCCCCccceEEEEECCCCc--eeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEE
Q 020688 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (322)
Q Consensus 125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y 202 (322)
++.++.||+.+. + ..++++|+.+.+ |+.- ... .. ..++.+++||+... ...+.++
T Consensus 253 ~v~~~~vy~~~~-~------g~l~ald~~tG~~~W~~~--~~~--~~---~~~~~~~~vy~~~~---------~g~l~al 309 (394)
T PRK11138 253 VVVGGVVYALAY-N------GNLVALDLRSGQIVWKRE--YGS--VN---DFAVDGGRIYLVDQ---------NDRVYAL 309 (394)
T ss_pred EEECCEEEEEEc-C------CeEEEEECCCCCEEEeec--CCC--cc---CcEEECCEEEEEcC---------CCeEEEE
Confidence 456888887653 1 348999998765 8752 222 11 24667999999752 3568999
Q ss_pred ECCCC--cEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCcceEEEEe
Q 020688 203 DSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRFAGF 280 (322)
Q Consensus 203 D~~t~--~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~ 280 (322)
|+++. .|+.-. + ..+...+.++.+++||+... ++ .+.++|....+-.|+......... ...++.
T Consensus 310 d~~tG~~~W~~~~-~-~~~~~~sp~v~~g~l~v~~~-~G----------~l~~ld~~tG~~~~~~~~~~~~~~-s~P~~~ 375 (394)
T PRK11138 310 DTRGGVELWSQSD-L-LHRLLTAPVLYNGYLVVGDS-EG----------YLHWINREDGRFVAQQKVDSSGFL-SEPVVA 375 (394)
T ss_pred ECCCCcEEEcccc-c-CCCcccCCEEECCEEEEEeC-CC----------EEEEEECCCCCEEEEEEcCCCcce-eCCEEE
Confidence 99876 486532 1 12223334567899887533 11 233445442344566543222223 355667
Q ss_pred CCEEEEEc
Q 020688 281 PHVIYLSL 288 (322)
Q Consensus 281 ~~~iyi~G 288 (322)
+++||+..
T Consensus 376 ~~~l~v~t 383 (394)
T PRK11138 376 DDKLLIQA 383 (394)
T ss_pred CCEEEEEe
Confidence 88887763
No 61
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.55 E-value=4.3 Score=38.64 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=74.2
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeE
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~ 224 (322)
.+++.+|..+...+.+..... ..........+.+|+......+ ...++.+|..+.++.++....... ....
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~--~~~~~~~s~dg~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~~~~~~~-~~~~ 328 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPG--IDTEPSWSPDGKSIAFTSDRGG------SPQIYMMDADGGEVRRLTFRGGYN-ASPS 328 (417)
T ss_pred ccEEEEECCCCCEEECCCCCC--CCCCEEECCCCCEEEEEECCCC------CceEEEEECCCCCEEEeecCCCCc-cCeE
Confidence 459999999888777654332 1112222223445655433221 247899999988887774321111 1112
Q ss_pred EEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCcceEEEEeCCEEEEEccccCCCCceEEeeccc
Q 020688 225 QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRFAGFPHVIYLSLVSSVEDLNFYVIQVPW 304 (322)
Q Consensus 225 ~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~~~~iyi~GG~~~e~~~~~~~q~~~ 304 (322)
..-+++.+++..... ....+..+|.. +..++......... .....-+++.+++.-.......+++ +..
T Consensus 329 ~spdg~~i~~~~~~~-------~~~~i~~~d~~--~~~~~~l~~~~~~~-~p~~spdg~~l~~~~~~~~~~~l~~--~~~ 396 (417)
T TIGR02800 329 WSPDGDLIAFVHREG-------GGFNIAVMDLD--GGGERVLTDTGLDE-SPSFAPNGRMILYATTRGGRGVLGL--VST 396 (417)
T ss_pred ECCCCCEEEEEEccC-------CceEEEEEeCC--CCCeEEccCCCCCC-CceECCCCCEEEEEEeCCCcEEEEE--EEC
Confidence 233555555554322 12345556653 43333222111111 1122335554444333222223333 345
Q ss_pred cccceeEEEecCCCC
Q 020688 305 EYNFKFRITIPDHEK 319 (322)
Q Consensus 305 ~~~~~~~~~~~~~~~ 319 (322)
+-+....|++|.++.
T Consensus 397 ~g~~~~~~~~~~g~~ 411 (417)
T TIGR02800 397 DGRFRARLPLGNGDV 411 (417)
T ss_pred CCceeeECCCCCCCc
Confidence 566778888886653
No 62
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.10 E-value=4.7 Score=39.25 Aligned_cols=74 Identities=8% Similarity=0.110 Sum_probs=43.8
Q ss_pred CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCC
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~ 207 (322)
++.|++....++ ..+++++|..+++.+++..... .....+....+.+|+......+ ..+++.+|..+.
T Consensus 273 G~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~--~~~~p~wSpDG~~I~f~s~~~g------~~~Iy~~dl~~g 340 (448)
T PRK04792 273 GKKLALVLSKDG----QPEIYVVDIATKALTRITRHRA--IDTEPSWHPDGKSLIFTSERGG------KPQIYRVNLASG 340 (448)
T ss_pred CCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCC--CccceEECCCCCEEEEEECCCC------CceEEEEECCCC
Confidence 345655543332 2469999999998887765322 1122222233455655532221 357999999999
Q ss_pred cEEecC
Q 020688 208 KWDSIP 213 (322)
Q Consensus 208 ~W~~~~ 213 (322)
+++++.
T Consensus 341 ~~~~Lt 346 (448)
T PRK04792 341 KVSRLT 346 (448)
T ss_pred CEEEEe
Confidence 998874
No 63
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.42 E-value=7.9 Score=37.41 Aligned_cols=156 Identities=9% Similarity=0.031 Sum_probs=86.4
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeE
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~ 224 (322)
.++|.+|..+.+++++.+.+. .-........+.+||......+ ..+++++|..+.+.+++..- ..... .
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g------~~~Iy~~dl~~g~~~rlt~~--g~~~~-~ 325 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPG--IDVNGNFVEDDKRIVFVSDRLG------YPNIFMKKLNSGSVEQVVFH--GKNNS-S 325 (419)
T ss_pred cEEEEEECCCCcEEEcccCCC--ccCccEECCCCCEEEEEECCCC------CceEEEEECCCCCeEeCccC--CCcCc-e
Confidence 569999999999988876542 1122233334667777654321 35799999999988877532 11222 3
Q ss_pred EEECCE-EEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCcceEEEEeCCEEEEEccccCCCCceEEeecc
Q 020688 225 QLWRGR-LHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRFAGFPHVIYLSLVSSVEDLNFYVIQVP 303 (322)
Q Consensus 225 ~~~~~~-Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~~~~iyi~GG~~~e~~~~~~~q~~ 303 (322)
..-+|+ |..........+. ...+++.++|.. +..++.....+... .....-+|+.+++-... ...-....++
T Consensus 326 ~SPDG~~Ia~~~~~~~~~~~--~~~~~I~v~d~~--~g~~~~LT~~~~~~-~p~~SPDG~~I~f~~~~--~~~~~L~~~~ 398 (419)
T PRK04043 326 VSTYKNYIVYSSRETNNEFG--KNTFNLYLISTN--SDYIRRLTANGVNQ-FPRFSSDGGSIMFIKYL--GNQSALGIIR 398 (419)
T ss_pred ECCCCCEEEEEEcCCCcccC--CCCcEEEEEECC--CCCeEECCCCCCcC-CeEECCCCCEEEEEEcc--CCcEEEEEEe
Confidence 333444 4444332211111 112456666654 56665544333222 12222355554443332 3344567778
Q ss_pred ccccceeEEEecCCC
Q 020688 304 WEYNFKFRITIPDHE 318 (322)
Q Consensus 304 ~~~~~~~~~~~~~~~ 318 (322)
.+-+.++++.++.++
T Consensus 399 l~g~~~~~l~~~~g~ 413 (419)
T PRK04043 399 LNYNKSFLFPLKVGK 413 (419)
T ss_pred cCCCeeEEeecCCCc
Confidence 888899998887665
No 64
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=92.65 E-value=5.6 Score=35.32 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=85.4
Q ss_pred CCCEEEcCCCC-----CCcccceEEE-ECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEe--
Q 020688 106 DLEWEQMPSAP-----VPRLDGAAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-- 177 (322)
Q Consensus 106 ~~~W~~~~~~p-----~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~-- 177 (322)
+.-|+...|+. .|--+..... -.|.|+..||- ..+++.|.++.+-++.-.-. ..+-|+++.-
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~~ 167 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCC---cceeeeeeeccc
Confidence 45576665553 3333322222 36788888872 34788899998876632211 3455555542
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEECCCCcEEec-C-----CCCCCCCCC--eEEEECCEEEEEccCCCCCCCCCccee
Q 020688 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI-P-----PLPSPRYSP--ATQLWRGRLHVMGGSKENRHTPGLEHW 249 (322)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~-~-----~~p~~r~~~--~~~~~~~~Lyi~GG~~~~~~~~~~~~~ 249 (322)
++.|+ .|+.+ ..+.++|++|.+=.++ . .+..|..+- .+...+..-.+.|| -+....|
T Consensus 168 ~~qil-sG~ED--------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg------Gp~lslw 232 (325)
T KOG0649|consen 168 NGQIL-SGAED--------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG------GPKLSLW 232 (325)
T ss_pred Cccee-ecCCC--------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC------CCceeEE
Confidence 33432 34432 3467788888765554 1 222222222 23333334445555 2455667
Q ss_pred EeEEecccccccccccccCCCCCcceEEEEeCCEEEEEc-cccCCCCc
Q 020688 250 SIAVKDGKALEKAWRTEIPIPRGGPHRFAGFPHVIYLSL-VSSVEDLN 296 (322)
Q Consensus 250 ~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~~~~iyi~G-G~~~e~~~ 296 (322)
.+. ..+=++..|+|-.- |-+...++.+++.| |+-++.|.
T Consensus 233 hLr-------sse~t~vfpipa~v-~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 233 HLR-------SSESTCVFPIPARV-HLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred ecc-------CCCceEEEecccce-eEeeeecceEEEeccccceeeee
Confidence 663 44445566777555 56667777777777 65555543
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.51 E-value=6.6 Score=36.95 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=68.9
Q ss_pred eEEEECCEEEEEeecCCCCCccceEEEEECCCCc--eeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEE
Q 020688 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF 200 (322)
Q Consensus 123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 200 (322)
+.++.+++||+.+.. ..+++||+.+.+ |+.- ++. +...+.++.++.+|+.+. ...++
T Consensus 60 ~p~v~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~--~~~---~~~~~p~v~~~~v~v~~~---------~g~l~ 118 (377)
T TIGR03300 60 QPAVAGGKVYAADAD-------GTVVALDAETGKRLWRVD--LDE---RLSGGVGADGGLVFVGTE---------KGEVI 118 (377)
T ss_pred ceEEECCEEEEECCC-------CeEEEEEccCCcEeeeec--CCC---CcccceEEcCCEEEEEcC---------CCEEE
Confidence 445668888876531 358999987665 8653 221 112234556888887532 34689
Q ss_pred EEECCCC--cEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCC----CCcc
Q 020688 201 VLDSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIP----RGGP 274 (322)
Q Consensus 201 ~yD~~t~--~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~p----r~~~ 274 (322)
++|+.+. .|+.-.. ... ....++.++++|+..+. . .+.++|.+..+..|+.....+ +..
T Consensus 119 ald~~tG~~~W~~~~~--~~~-~~~p~v~~~~v~v~~~~------g-----~l~a~d~~tG~~~W~~~~~~~~~~~~~~- 183 (377)
T TIGR03300 119 ALDAEDGKELWRAKLS--SEV-LSPPLVANGLVVVRTND------G-----RLTALDAATGERLWTYSRVTPALTLRGS- 183 (377)
T ss_pred EEECCCCcEeeeeccC--cee-ecCCEEECCEEEEECCC------C-----eEEEEEcCCCceeeEEccCCCceeecCC-
Confidence 9998766 4876422 111 12224467777775431 1 234555543355687543322 222
Q ss_pred eEEEEeCCEEEE
Q 020688 275 HRFAGFPHVIYL 286 (322)
Q Consensus 275 ~~~~v~~~~iyi 286 (322)
...++.++.+|+
T Consensus 184 ~sp~~~~~~v~~ 195 (377)
T TIGR03300 184 ASPVIADGGVLV 195 (377)
T ss_pred CCCEEECCEEEE
Confidence 234455665443
No 66
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.46 E-value=1.4 Score=39.55 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=70.9
Q ss_pred eEEE-ECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEE
Q 020688 123 AAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV 201 (322)
Q Consensus 123 ~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 201 (322)
+... .++.||.--|.-+ .+.+.++|+.+.+-.+..+++. .-.+-+++.++++||.+-=. ....++
T Consensus 49 GL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~--~~FgEGit~~~d~l~qLTWk--------~~~~f~ 114 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPP--RYFGEGITILGDKLYQLTWK--------EGTGFV 114 (264)
T ss_dssp EEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TT--T--EEEEEEETTEEEEEESS--------SSEEEE
T ss_pred cEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCc--cccceeEEEECCEEEEEEec--------CCeEEE
Confidence 3444 4789998877544 3569999999998777677776 66888999999999998521 567899
Q ss_pred EECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCC
Q 020688 202 LDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSK 238 (322)
Q Consensus 202 yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~ 238 (322)
||+.+ .+.+..++.+..+-++|..+.+|++.-|.+
T Consensus 115 yd~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 115 YDPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp EETTT--TEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred Ecccc--ceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence 99976 456655555667788888888899998864
No 67
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.31 E-value=9.8 Score=35.77 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=67.3
Q ss_pred EECCEEEEEeecCCCCCccceEEEEECCCCc--eeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEE
Q 020688 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (322)
Q Consensus 126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD 203 (322)
..++.+|+..+ ...++.+|+++.+ |+.....+....+...+.++.++.+|+ |.. ...+..+|
T Consensus 143 v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~--------~g~v~ald 206 (377)
T TIGR03300 143 VANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA--------GGKLVALD 206 (377)
T ss_pred EECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC--------CCEEEEEE
Confidence 34566655432 1348889987654 775332221001222334556776654 321 24688999
Q ss_pred CCCC--cEEecCCCCCCC--------CCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCc
Q 020688 204 SETR--KWDSIPPLPSPR--------YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG 273 (322)
Q Consensus 204 ~~t~--~W~~~~~~p~~r--------~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~ 273 (322)
+++. .|+.-...+... ......+.++.+|+.... + .+.++|.+..+..|+...+ ..
T Consensus 207 ~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-g----------~l~a~d~~tG~~~W~~~~~---~~ 272 (377)
T TIGR03300 207 LQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-G----------RVAALDLRSGRVLWKRDAS---SY 272 (377)
T ss_pred ccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-C----------EEEEEECCCCcEEEeeccC---Cc
Confidence 8776 586532222111 112334567888886431 1 2445565434556876421 11
Q ss_pred ceEEEEeCCEEEEEc
Q 020688 274 PHRFAGFPHVIYLSL 288 (322)
Q Consensus 274 ~~~~~v~~~~iyi~G 288 (322)
...++.++.||+..
T Consensus 273 -~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 273 -QGPAVDDNRLYVTD 286 (377)
T ss_pred -cCceEeCCEEEEEC
Confidence 24445677777764
No 68
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.70 E-value=7.3 Score=33.59 Aligned_cols=120 Identities=22% Similarity=0.315 Sum_probs=66.5
Q ss_pred hhccCCCC--CCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCc--ee-eCCCCCCCCCceeeE
Q 020688 99 FADLPAPD--LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WV-DRFDMPKDMAHSHLG 173 (322)
Q Consensus 99 ~~~~~~~~--~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~-~~~~~~~p~~r~~~~ 173 (322)
++.+|..+ ..|+.-. +.+ ........++.+|+..+ .+.++.+|..+.+ |+ .....+....+....
T Consensus 48 l~~~d~~tG~~~W~~~~--~~~-~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 117 (238)
T PF13360_consen 48 LYALDAKTGKVLWRFDL--PGP-ISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSS 117 (238)
T ss_dssp EEEEETTTSEEEEEEEC--SSC-GGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SE
T ss_pred EEEEECCCCCEEEEeec--ccc-ccceeeecccccccccc-------eeeeEecccCCcceeeeeccccccccccccccC
Confidence 44555433 3576543 222 11224677899988762 1259999977665 88 343322210234455
Q ss_pred EEEeCCEEEEEecccCCCCCCCCceEEEEECCCCc--EEecCCCCCCCC--------CCeEEEECCEEEEEccC
Q 020688 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRY--------SPATQLWRGRLHVMGGS 237 (322)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~--W~~~~~~p~~r~--------~~~~~~~~~~Lyi~GG~ 237 (322)
..+.++.+|+... ...+.++|+++.+ |+.-...+.... ....+..++.+|+..+.
T Consensus 118 ~~~~~~~~~~~~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (238)
T PF13360_consen 118 PAVDGDRLYVGTS---------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD 182 (238)
T ss_dssp EEEETTEEEEEET---------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT
T ss_pred ceEecCEEEEEec---------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC
Confidence 5566888877653 3578999998774 877543322111 12233446788888764
No 69
>smart00284 OLF Olfactomedin-like domains.
Probab=91.12 E-value=3.5 Score=36.95 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=78.2
Q ss_pred CCEEEEEeecCCCCCccceEEEEE----CCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEE
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYN----FTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd----~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD 203 (322)
++++|++.+.... .+.++.|. +....+.+.-.+|. +-.+.+.++++|.+|---.. ...+.+||
T Consensus 34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~GtG~VVYngslYY~~~~--------s~~iiKyd 100 (255)
T smart00284 34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPH--AGQGTGVVVYNGSLYFNKFN--------SHDICRFD 100 (255)
T ss_pred CceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCC--ccccccEEEECceEEEEecC--------CccEEEEE
Confidence 4789988765311 23466663 33344433334554 56788889999999985321 56799999
Q ss_pred CCCCcEEecCCCCCCCC------------CCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccc--cccccccccCC
Q 020688 204 SETRKWDSIPPLPSPRY------------SPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKA--LEKAWRTEIPI 269 (322)
Q Consensus 204 ~~t~~W~~~~~~p~~r~------------~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~--~~~~W~~~~p~ 269 (322)
+.+++=.....+|.+.+ ..-.++.++-|+++=...+. .....+...||.. -.++|....+-
T Consensus 101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~-----~g~ivvSkLnp~tL~ve~tW~T~~~k 175 (255)
T smart00284 101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN-----AGKIVISKLNPATLTIENTWITTYNK 175 (255)
T ss_pred CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC-----CCCEEEEeeCcccceEEEEEEcCCCc
Confidence 99987544433443211 12234556666666322111 0112334444431 25678774444
Q ss_pred CCCcceEEEEeCCEEEEEc
Q 020688 270 PRGGPHRFAGFPHVIYLSL 288 (322)
Q Consensus 270 pr~~~~~~~v~~~~iyi~G 288 (322)
+..+ .+.++=|.||++-
T Consensus 176 ~sa~--naFmvCGvLY~~~ 192 (255)
T smart00284 176 RSAS--NAFMICGILYVTR 192 (255)
T ss_pred cccc--ccEEEeeEEEEEc
Confidence 4444 5556667888885
No 70
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.05 E-value=15 Score=35.37 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=76.4
Q ss_pred CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCC
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~ 207 (322)
+++|++....++. .+++++|+.+.+-+++..... .....+....+.+|+......+ ...++.+|..+.
T Consensus 259 G~~l~~~~s~~g~----~~Iy~~d~~~g~~~~lt~~~~--~~~~~~~spDG~~l~f~sd~~g------~~~iy~~dl~~g 326 (433)
T PRK04922 259 GRRLALTLSRDGN----PEIYVMDLGSRQLTRLTNHFG--IDTEPTWAPDGKSIYFTSDRGG------RPQIYRVAASGG 326 (433)
T ss_pred CCEEEEEEeCCCC----ceEEEEECCCCCeEECccCCC--CccceEECCCCCEEEEEECCCC------CceEEEEECCCC
Confidence 3456544333222 469999999888776654322 1122223333445555432221 246899999888
Q ss_pred cEEecCCCCCCCCCC-eEEE-ECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCcceEEEEeCCEEE
Q 020688 208 KWDSIPPLPSPRYSP-ATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRFAGFPHVIY 285 (322)
Q Consensus 208 ~W~~~~~~p~~r~~~-~~~~-~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~~~~iy 285 (322)
+.+++..- ..... .... .++.|++..+. +. .+.+.++|.. +.+.+....-+... .....-+++.+
T Consensus 327 ~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~-~~-------~~~I~v~d~~--~g~~~~Lt~~~~~~-~p~~spdG~~i 393 (433)
T PRK04922 327 SAERLTFQ--GNYNARASVSPDGKKIAMVHGS-GG-------QYRIAVMDLS--TGSVRTLTPGSLDE-SPSFAPNGSMV 393 (433)
T ss_pred CeEEeecC--CCCccCEEECCCCCEEEEEECC-CC-------ceeEEEEECC--CCCeEECCCCCCCC-CceECCCCCEE
Confidence 88877421 11211 1222 23455554332 11 1244555543 44444322211111 11222356655
Q ss_pred EEccccCCCCceEEeeccccccceeEEEecCCC
Q 020688 286 LSLVSSVEDLNFYVIQVPWEYNFKFRITIPDHE 318 (322)
Q Consensus 286 i~GG~~~e~~~~~~~q~~~~~~~~~~~~~~~~~ 318 (322)
++.........++.+ +-+-....+|+.|+++
T Consensus 394 ~~~s~~~g~~~L~~~--~~~g~~~~~l~~~~g~ 424 (433)
T PRK04922 394 LYATREGGRGVLAAV--STDGRVRQRLVSADGE 424 (433)
T ss_pred EEEEecCCceEEEEE--ECCCCceEEcccCCCC
Confidence 554443333334433 3343456666666554
No 71
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.63 E-value=2.8 Score=33.18 Aligned_cols=82 Identities=13% Similarity=0.276 Sum_probs=56.7
Q ss_pred EeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCC---CCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeE
Q 020688 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA 252 (322)
Q Consensus 176 ~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~---~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~ 252 (322)
.++|.+|-.+-..... ...+.+||.++.+|+.+.. .........++.++|+|-++.-..... ....+.|-++
T Consensus 3 cinGvly~~a~~~~~~----~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe 77 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSD----NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE 77 (129)
T ss_pred EECcEEEeEEEECCCC----CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence 4688888776551111 4679999999999988843 233455677888999999986543222 3568889877
Q ss_pred Eecccccccccccc
Q 020688 253 VKDGKALEKAWRTE 266 (322)
Q Consensus 253 ~yd~~~~~~~W~~~ 266 (322)
|.. +++|.+.
T Consensus 78 --D~~--k~~Wsk~ 87 (129)
T PF08268_consen 78 --DYE--KQEWSKK 87 (129)
T ss_pred --ccc--cceEEEE
Confidence 443 7899964
No 72
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.61 E-value=2.6 Score=37.75 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=80.5
Q ss_pred CCEEEEEeecCCCCCccceEEEEE----C-CCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEE
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYN----F-TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd----~-~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y 202 (322)
++++|++.|..+. .++.|. . ..+...+.-.+|. +-.+.+.++++|.+|---. .++.+.+|
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~--~~~GtG~vVYngslYY~~~--------~s~~Ivky 94 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPY--PWQGTGHVVYNGSLYYNKY--------NSRNIVKY 94 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEec--eeccCCeEEECCcEEEEec--------CCceEEEE
Confidence 4789999886543 355553 2 2333333334454 5577778889999886532 16889999
Q ss_pred ECCCCcE---EecCCC------CC---CCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEeccc--ccccccccccC
Q 020688 203 DSETRKW---DSIPPL------PS---PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK--ALEKAWRTEIP 268 (322)
Q Consensus 203 D~~t~~W---~~~~~~------p~---~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~--~~~~~W~~~~p 268 (322)
|+.++.= ..++.. |- +-...-.++.++-|+++=...... ....+...||. ..+++|....+
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-----g~ivvskld~~tL~v~~tw~T~~~ 169 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-----GNIVVSKLDPETLSVEQTWNTSYP 169 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-----CcEEEEeeCcccCceEEEEEeccC
Confidence 9998864 444321 11 111123346667777775432211 11234444543 12567876544
Q ss_pred CCCCcceEEEEeCCEEEEEcccc
Q 020688 269 IPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 269 ~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
-+..+ .+.++=|.||++...+
T Consensus 170 k~~~~--naFmvCGvLY~~~s~~ 190 (250)
T PF02191_consen 170 KRSAG--NAFMVCGVLYATDSYD 190 (250)
T ss_pred chhhc--ceeeEeeEEEEEEECC
Confidence 44444 5666678899986644
No 73
>PRK02889 tolB translocation protein TolB; Provisional
Probab=90.60 E-value=17 Score=35.07 Aligned_cols=154 Identities=10% Similarity=0.021 Sum_probs=73.7
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeE
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~ 224 (322)
.++|.+|..+...+++..-.. ..........+.+|+...... + ...++.+|..+...+++..- ........
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~~--~~~~~~wSpDG~~l~f~s~~~--g----~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~ 334 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSSG--IDTEPFFSPDGRSIYFTSDRG--G----APQIYRMPASGGAAQRVTFT-GSYNTSPR 334 (427)
T ss_pred ceEEEEECCCCCcEECCCCCC--CCcCeEEcCCCCEEEEEecCC--C----CcEEEEEECCCCceEEEecC-CCCcCceE
Confidence 469999988777666644221 112223333345565543221 1 34688888888777776421 11111122
Q ss_pred EEECC-EEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCcceEEEEeCCEEEEEccccCCCCceEEeecc
Q 020688 225 QLWRG-RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRFAGFPHVIYLSLVSSVEDLNFYVIQVP 303 (322)
Q Consensus 225 ~~~~~-~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~~~~iyi~GG~~~e~~~~~~~q~~ 303 (322)
..-+| .|+..... +. .+.+.++|.. +.+.+......... .-...-+++.+++.........++...+
T Consensus 335 ~SpDG~~Ia~~s~~-~g-------~~~I~v~d~~--~g~~~~lt~~~~~~-~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 335 ISPDGKLLAYISRV-GG-------AFKLYVQDLA--TGQVTALTDTTRDE-SPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred ECCCCCEEEEEEcc-CC-------cEEEEEEECC--CCCeEEccCCCCcc-CceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 22344 44433322 11 1245556653 33333222111111 1122226666666554433444555544
Q ss_pred ccccceeEEEecCCCCC
Q 020688 304 WEYNFKFRITIPDHEKS 320 (322)
Q Consensus 304 ~~~~~~~~~~~~~~~~~ 320 (322)
+-..+.+|+.|+++.+
T Consensus 403 -~g~~~~~l~~~~g~~~ 418 (427)
T PRK02889 403 -DGRIKQRLSVQGGDVR 418 (427)
T ss_pred -CCCceEEeecCCCCCC
Confidence 4456778888888654
No 74
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=89.80 E-value=18 Score=34.25 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=37.9
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~ 215 (322)
..++++|..+.+-..+..... ..........+..|++.....+ ..+++.+|..++...++...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~--~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG--MNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCCC
Confidence 468999998887666554432 2222222223446665543221 34689999999888877543
No 75
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=89.67 E-value=4.9 Score=31.71 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=55.3
Q ss_pred EECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCC-CCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEE-E
Q 020688 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL-D 203 (322)
Q Consensus 126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y-D 203 (322)
.++|-||-.+-.... ....+..||..+++|+.+... ..........++.++|+|-++.-..... ...-++|++ |
T Consensus 3 cinGvly~~a~~~~~--~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD 78 (129)
T PF08268_consen 3 CINGVLYWLAWSEDS--DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED 78 (129)
T ss_pred EECcEEEeEEEECCC--CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence 467888877765222 235689999999999876542 1122557778888999998876543322 013577887 4
Q ss_pred CCCCcEEec
Q 020688 204 SETRKWDSI 212 (322)
Q Consensus 204 ~~t~~W~~~ 212 (322)
..+.+|++.
T Consensus 79 ~~k~~Wsk~ 87 (129)
T PF08268_consen 79 YEKQEWSKK 87 (129)
T ss_pred cccceEEEE
Confidence 667789976
No 76
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=88.20 E-value=24 Score=33.52 Aligned_cols=150 Identities=11% Similarity=0.058 Sum_probs=77.5
Q ss_pred CCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCC-----CCCC--CCCCeEEE
Q 020688 154 DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP-----LPSP--RYSPATQL 226 (322)
Q Consensus 154 t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~-----~p~~--r~~~~~~~ 226 (322)
.+.|+.+..+. ...--++.++|++|++.- ..+++..|..- +=+++.+ +... +.....+.
T Consensus 189 ~~~Wt~l~~~~----~~~~DIi~~kGkfYAvD~---------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVE 254 (373)
T PLN03215 189 GNVLKALKQMG----YHFSDIIVHKGQTYALDS---------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVE 254 (373)
T ss_pred CCeeeEccCCC----ceeeEEEEECCEEEEEcC---------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEE
Confidence 48999986533 346678889999999831 23456666321 1112221 1111 12234667
Q ss_pred ECCEEEEEccCCCCCCC-------CCcceeEeEEecccccccccccccCCCC-------CcceEE------EEeCCEEEE
Q 020688 227 WRGRLHVMGGSKENRHT-------PGLEHWSIAVKDGKALEKAWRTEIPIPR-------GGPHRF------AGFPHVIYL 286 (322)
Q Consensus 227 ~~~~Lyi~GG~~~~~~~-------~~~~~~~i~~yd~~~~~~~W~~~~p~pr-------~~~~~~------~v~~~~iyi 286 (322)
..|+|+++......... .......+++|-.+.+..+|.++..++. ..+.++ ...+|.||+
T Consensus 255 s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYF 334 (373)
T PLN03215 255 CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYF 334 (373)
T ss_pred ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEE
Confidence 78999999875221100 0011234455533234789998765541 110011 112567777
Q ss_pred EccccCCCCceEEeeccccccceeEEEecCCCCCCC
Q 020688 287 SLVSSVEDLNFYVIQVPWEYNFKFRITIPDHEKSIF 322 (322)
Q Consensus 287 ~GG~~~e~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 322 (322)
... +..+++.+.--..=.|..++++-.+|-|
T Consensus 335 tdd-----~~~~v~~~~dg~~~~~~~~~~~~~~~~~ 365 (373)
T PLN03215 335 TED-----TMPKVFKLDNGNGSSIETTISESSQSSF 365 (373)
T ss_pred ECC-----CcceEEECCCCCccceEeecCccccchh
Confidence 732 3334555544444456677776666544
No 77
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=87.41 E-value=8.2 Score=37.16 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=75.0
Q ss_pred CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCC-CCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCC
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t 206 (322)
...+.+.+|.+..-. ++..|-++|. .+.++.. ..|......+..+....+.+|+ ..-++.||.++
T Consensus 224 ~~plllvaG~d~~lr----ifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~ 289 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLR----IFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLET 289 (514)
T ss_pred CCceEEEecCCCcEE----EEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--------ceEEEEeeccc
Confidence 456888999765432 5666666665 4555543 1133333333334436666664 45688999999
Q ss_pred CcEEecCCCCC--CCCCCe-EEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCC-CcceEEEEeCC
Q 020688 207 RKWDSIPPLPS--PRYSPA-TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRFAGFPH 282 (322)
Q Consensus 207 ~~W~~~~~~p~--~r~~~~-~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr-~~~~~~~v~~~ 282 (322)
.+-+++.++-. .+.-.. -+..++.+.++-|.++..+.-. +.+++|-....++- ..-.....-+.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh------------akT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH------------AKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh------------hhhhhhhheeeeccEEeeEEEecCCc
Confidence 98888864421 111111 1233445555556544332111 23677765555542 22011122244
Q ss_pred EEEEEccccCCCCceEEee
Q 020688 283 VIYLSLVSSVEDLNFYVIQ 301 (322)
Q Consensus 283 ~iyi~GG~~~e~~~~~~~q 301 (322)
.||+.||+. +.|.+.+.|
T Consensus 358 ~l~~~~~~G-eV~v~nl~~ 375 (514)
T KOG2055|consen 358 ELLASGGTG-EVYVWNLRQ 375 (514)
T ss_pred EEEEEcCCc-eEEEEecCC
Confidence 566667655 555444433
No 78
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.77 E-value=19 Score=35.93 Aligned_cols=96 Identities=20% Similarity=0.339 Sum_probs=55.6
Q ss_pred eEEEECCEEEEEeecCCCCCccceEEEEECCCCc--eeeCCCCCCCC-C-----ceeeEEEEeCCEEEEEecccCCCCCC
Q 020688 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDM-A-----HSHLGVVSDGRYIYIVSGQYGPQCRG 194 (322)
Q Consensus 123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~p~-~-----r~~~~~~~~~~~iyv~GG~~~~~~~~ 194 (322)
+-++.++.||+.... ..++.+|..+.+ |+.-...+... + ....+.++.+++||+...
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------- 128 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--------
Confidence 345679999986542 248889988755 87643322100 0 112345677889887432
Q ss_pred CCceEEEEECCCCc--EEecCC-CCCC-CCCCeEEEECCEEEEE
Q 020688 195 PTSRTFVLDSETRK--WDSIPP-LPSP-RYSPATQLWRGRLHVM 234 (322)
Q Consensus 195 ~~~~~~~yD~~t~~--W~~~~~-~p~~-r~~~~~~~~~~~Lyi~ 234 (322)
...+.++|.+|.+ |+.-.. .... ....+-++.+++||+-
T Consensus 129 -dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 129 -DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred -CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEe
Confidence 3568999998874 876421 1111 1122335678887775
No 79
>PRK03629 tolB translocation protein TolB; Provisional
Probab=86.63 E-value=32 Score=33.23 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=35.0
Q ss_pred eEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecC
Q 020688 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~ 213 (322)
+++++|..+.+.+++..... ..........+..|+...... + ..+++.+|+.+.+-.++.
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~--~~~~~~wSPDG~~I~f~s~~~--g----~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRS--NNTEPTWFPDSQNLAYTSDQA--G----RPQVYKVNINGGAPQRIT 327 (429)
T ss_pred EEEEEECCCCCEEEccCCCC--CcCceEECCCCCEEEEEeCCC--C----CceEEEEECCCCCeEEee
Confidence 59999999888877654432 222222222344454433221 1 247888999887776664
No 80
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=85.24 E-value=25 Score=30.92 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=36.5
Q ss_pred EEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEE--eCCEEEEEecccCCCCCCCCceEEEEECCCC
Q 020688 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 130 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~ 207 (322)
++|+.++.+ ..+.+||+.+++-......... ++ +++. .+..+|+.++. ...+..||+.+.
T Consensus 2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~~-~~---~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~ 63 (300)
T TIGR03866 2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQR-PR---GITLSKDGKLLYVCASD--------SDTIQVIDLATG 63 (300)
T ss_pred cEEEEecCC------CEEEEEECCCCceEEEEECCCC-CC---ceEECCCCCEEEEEECC--------CCeEEEEECCCC
Confidence 567776643 3588899887764332222210 22 2222 24467777642 356888999887
Q ss_pred cEEe
Q 020688 208 KWDS 211 (322)
Q Consensus 208 ~W~~ 211 (322)
+...
T Consensus 64 ~~~~ 67 (300)
T TIGR03866 64 EVIG 67 (300)
T ss_pred cEEE
Confidence 6544
No 81
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=84.93 E-value=23 Score=30.10 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=69.5
Q ss_pred eEEEECCEEEEEeecCCCCCccceEEEEECCCCce--eeCCCC-C-CCCCceeeEEEEe-CCEEEEEecccCCCCCCCCc
Q 020688 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW--VDRFDM-P-KDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTS 197 (322)
Q Consensus 123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~-~-~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 197 (322)
+++...+++|+|-| +.+|+++...... ..+... + .| .....+...- ++++|++-| +
T Consensus 11 A~~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg----------~ 71 (194)
T cd00094 11 AVTTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKG----------D 71 (194)
T ss_pred eEEEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECC----------C
Confidence 34455799999977 3477777652211 111111 1 11 1122222222 389999965 3
Q ss_pred eEEEEECCCCcEEe---cCCCCCC---CCCCeEEEE--CCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCC
Q 020688 198 RTFVLDSETRKWDS---IPPLPSP---RYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI 269 (322)
Q Consensus 198 ~~~~yD~~t~~W~~---~~~~p~~---r~~~~~~~~--~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~ 269 (322)
..++||..+..+.- +.....+ ..--++..+ ++++|+|-|..--.+..... .++.--|+...+.|.. +
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~y~ry~~~~~--~v~~~yP~~i~~~w~g---~ 146 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDKYWRYDEKTQ--KMDPGYPKLIETDFPG---V 146 (194)
T ss_pred EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCEEEEEeCCCc--cccCCCCcchhhcCCC---c
Confidence 57777765422211 1111111 111234444 58999998843222211100 0100001112334533 3
Q ss_pred CCCcceEEEEe-CCEEEEEccccCCCCceE
Q 020688 270 PRGGPHRFAGF-PHVIYLSLVSSVEDLNFY 298 (322)
Q Consensus 270 pr~~~~~~~v~-~~~iyi~GG~~~e~~~~~ 298 (322)
|..- .++... ++++|+|-|...-+|+..
T Consensus 147 p~~i-daa~~~~~~~~yfF~g~~y~~~d~~ 175 (194)
T cd00094 147 PDKV-DAAFRWLDGYYYFFKGDQYWRFDPR 175 (194)
T ss_pred CCCc-ceeEEeCCCcEEEEECCEEEEEeCc
Confidence 3322 233334 489999999766555543
No 82
>PRK04792 tolB translocation protein TolB; Provisional
Probab=83.63 E-value=45 Score=32.42 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=39.6
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~ 214 (322)
..++++|..+.+-+.+...+. ..........+.+|++....++ ..+++.+|..+++.+++..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPG--INGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCCC--CcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECcc
Confidence 469999998887766665543 1222333334556766543222 3579999999999888754
No 83
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=83.22 E-value=20 Score=32.37 Aligned_cols=103 Identities=22% Similarity=0.195 Sum_probs=65.2
Q ss_pred eeeEEEE-eCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcce
Q 020688 170 SHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH 248 (322)
Q Consensus 170 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~ 248 (322)
.--+... .++.+|.--|..+ .+.+..+|+.|.+=.+..++|..-++-++++++++||..-=.++
T Consensus 46 FTQGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~--------- 110 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEG--------- 110 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSS---------
T ss_pred cCccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCC---------
Confidence 4445555 6789999988765 35789999999987777788888888999999999999843221
Q ss_pred eEeEEecccccccccccccCCCCCcceEEEEeCCEEEEEcccc
Q 020688 249 WSIAVKDGKALEKAWRTEIPIPRGGPHRFAGFPHVIYLSLVSS 291 (322)
Q Consensus 249 ~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~~~~iyi~GG~~ 291 (322)
..-+||++ +-+=....+.+.-+ -++|..+..||+--|.+
T Consensus 111 -~~f~yd~~--tl~~~~~~~y~~EG-WGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 111 -TGFVYDPN--TLKKIGTFPYPGEG-WGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp -EEEEEETT--TTEEEEEEE-SSS---EEEECSSCEEEE-SSS
T ss_pred -eEEEEccc--cceEEEEEecCCcc-eEEEcCCCEEEEECCcc
Confidence 12356643 21111223345556 47887777788777744
No 84
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=82.52 E-value=12 Score=35.98 Aligned_cols=122 Identities=11% Similarity=0.126 Sum_probs=69.8
Q ss_pred hhhccCCCCCCEEEcCCCC---CCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEE
Q 020688 98 TFADLPAPDLEWEQMPSAP---VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (322)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p---~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~ 174 (322)
.++.||.++.+-+++.++- ++-...-.+...+.+.++.|.. ..++.....|++|-.-..++. ....++.
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~KieG--~v~~~~f 352 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFKIEG--VVSDFTF 352 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheeeecc--EEeeEEE
Confidence 3566777777777775542 1111111223345566776642 246777788888865444553 3455555
Q ss_pred EEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEE-EECCEEEEEcc
Q 020688 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGG 236 (322)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~-~~~~~Lyi~GG 236 (322)
...+..|++.|| ...++++|..++.-...-.-....++.+.| ..++.++..|-
T Consensus 353 sSdsk~l~~~~~---------~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 353 SSDSKELLASGG---------TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS 406 (514)
T ss_pred ecCCcEEEEEcC---------CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc
Confidence 566778888887 357999999887432222122233455555 34566555553
No 85
>PRK05137 tolB translocation protein TolB; Provisional
Probab=82.09 E-value=50 Score=31.82 Aligned_cols=104 Identities=12% Similarity=0.061 Sum_probs=53.9
Q ss_pred hhccCCCCCCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeC
Q 020688 99 FADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG 178 (322)
Q Consensus 99 ~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~ 178 (322)
++..|..+.+.+.+...+..-......--+.+|++....++ ..+++++|..+.+-+++...+. ..........+
T Consensus 228 i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~--~~~~~~~spDG 301 (435)
T PRK05137 228 VYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPA--IDTSPSYSPDG 301 (435)
T ss_pred EEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCC--ccCceeEcCCC
Confidence 44455555666666554432211111112345544433322 2469999999888777655432 11222233334
Q ss_pred CEEEEEecccCCCCCCCCceEEEEECCCCcEEecCC
Q 020688 179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~ 214 (322)
.+|+...... + ...++.+|..+.+.+++..
T Consensus 302 ~~i~f~s~~~--g----~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 302 SQIVFESDRS--G----SPQLYVMNADGSNPRRISF 331 (435)
T ss_pred CEEEEEECCC--C----CCeEEEEECCCCCeEEeec
Confidence 4555433211 1 3578999998887777753
No 86
>PRK13684 Ycf48-like protein; Provisional
Probab=79.92 E-value=45 Score=31.07 Aligned_cols=150 Identities=12% Similarity=0.205 Sum_probs=72.2
Q ss_pred CCCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEE-EECCCCceeeCCCCCCCCCceeeEEEE-eCCEEEE
Q 020688 106 DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDV-YNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYI 183 (322)
Q Consensus 106 ~~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~~~p~~r~~~~~~~-~~~~iyv 183 (322)
-..|+.+.... .-.-+.+....+..|+..|..+ .++. .|....+|+.+.. +. .+...+++. -++.+++
T Consensus 161 G~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~-~~--~~~l~~i~~~~~g~~~~ 230 (334)
T PRK13684 161 GKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR-NS--SRRLQSMGFQPDGNLWM 230 (334)
T ss_pred CCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC-CC--cccceeeeEcCCCCEEE
Confidence 45777764322 1122333334444444444322 1222 2445567988744 32 445555554 3677888
Q ss_pred EecccCCCCCCCCceEEEEE-C-CCCcEEecCCCCC--CCCC-CeEEE-ECCEEEEEccCCCCCCCCCcceeEeEEeccc
Q 020688 184 VSGQYGPQCRGPTSRTFVLD-S-ETRKWDSIPPLPS--PRYS-PATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGK 257 (322)
Q Consensus 184 ~GG~~~~~~~~~~~~~~~yD-~-~t~~W~~~~~~p~--~r~~-~~~~~-~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~ 257 (322)
+|.. + ..++. . .-.+|+.+. .|. .... +++.. -++.+|++|... ..+ ...|
T Consensus 231 vg~~-G---------~~~~~s~d~G~sW~~~~-~~~~~~~~~l~~v~~~~~~~~~~~G~~G-~v~---------~S~d-- 287 (334)
T PRK13684 231 LARG-G---------QIRFNDPDDLESWSKPI-IPEITNGYGYLDLAYRTPGEIWAGGGNG-TLL---------VSKD-- 287 (334)
T ss_pred EecC-C---------EEEEccCCCCCcccccc-CCccccccceeeEEEcCCCCEEEEcCCC-eEE---------EeCC--
Confidence 8632 1 12231 2 224798753 221 1122 22222 266888887632 111 1112
Q ss_pred cccccccccc---CCCCCcceEEEEe-CCEEEEEccc
Q 020688 258 ALEKAWRTEI---PIPRGGPHRFAGF-PHVIYLSLVS 290 (322)
Q Consensus 258 ~~~~~W~~~~---p~pr~~~~~~~v~-~~~iyi~GG~ 290 (322)
..++|+... .+|... ..++.. +++.|+.|..
T Consensus 288 -~G~tW~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 288 -GGKTWEKDPVGEEVPSNF-YKIVFLDPEKGFVLGQR 322 (334)
T ss_pred -CCCCCeECCcCCCCCcce-EEEEEeCCCceEEECCC
Confidence 256888653 233333 455544 8888888864
No 87
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=79.36 E-value=33 Score=29.97 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=76.3
Q ss_pred cCCCCCCEEEcCCCC-----CCcccceEEEECCEEEEEeecCCCCCcc--ceEEEEECCCCceeeCC-CCCCCCCceeeE
Q 020688 102 LPAPDLEWEQMPSAP-----VPRLDGAAIQIKNLFYVFAGYGSLDYVH--SHVDVYNFTDNKWVDRF-DMPKDMAHSHLG 173 (322)
Q Consensus 102 ~~~~~~~W~~~~~~p-----~~R~~~~~~~~~~~lyv~GG~~~~~~~~--~~v~~yd~~t~~W~~~~-~~~~p~~r~~~~ 173 (322)
+|+.+.+++.+...+ ..|.+-.++.-++.||+---........ ..++++++. .+.+.+. .+. +. -+
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~----~p-NG 138 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG----FP-NG 138 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES----SE-EE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc----cc-cc
Confidence 366677887775542 2233333444477888754322211112 569999998 6655543 222 22 23
Q ss_pred EEEe--CCEEEEEecccCCCCCCCCceEEEEECCCC--cEEec---CCCCCCC-CCCeEEEE-CCEEEEEccCCCCCCCC
Q 020688 174 VVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSI---PPLPSPR-YSPATQLW-RGRLHVMGGSKENRHTP 244 (322)
Q Consensus 174 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~--~W~~~---~~~p~~r-~~~~~~~~-~~~Lyi~GG~~~~~~~~ 244 (322)
++.. ++.||+.--. ...+++||.... ++... ..++... ..-++++. +|.||+..-.. .
T Consensus 139 i~~s~dg~~lyv~ds~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~ 205 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSF--------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----G 205 (246)
T ss_dssp EEEETTSSEEEEEETT--------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----T
T ss_pred eEECCcchheeecccc--------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----C
Confidence 3333 4568885311 457899988543 23322 2222221 12234443 68899973211 1
Q ss_pred CcceeEeEEecccccccccccccCCCCCcceEEEEe---CCEEEEE
Q 020688 245 GLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRFAGF---PHVIYLS 287 (322)
Q Consensus 245 ~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~---~~~iyi~ 287 (322)
.|.+|||. .+-....++|-..+..++.- .+.|||.
T Consensus 206 -----~I~~~~p~---G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 206 -----RIVVFDPD---GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -----EEEEEETT---SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred -----EEEEECCC---ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 46677764 22223333442242334442 3567775
No 88
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.27 E-value=52 Score=30.26 Aligned_cols=155 Identities=19% Similarity=0.272 Sum_probs=81.0
Q ss_pred EEEcCCCCCC-c-ccceEEEECCEEEEEeec---------CCC--C-----CccceEEEEECCCCc----eeeCCCCCCC
Q 020688 109 WEQMPSAPVP-R-LDGAAIQIKNLFYVFAGY---------GSL--D-----YVHSHVDVYNFTDNK----WVDRFDMPKD 166 (322)
Q Consensus 109 W~~~~~~p~~-R-~~~~~~~~~~~lyv~GG~---------~~~--~-----~~~~~v~~yd~~t~~----W~~~~~~~~p 166 (322)
.+.+.+.|.. - ..-++..+++.|| |||+ ... . --.+.++.||.++++ |.+--.-+
T Consensus 25 felvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~-- 101 (339)
T PF09910_consen 25 FELVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK-- 101 (339)
T ss_pred eeeccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc--
Confidence 4556655432 1 2334445676665 6776 011 0 023579999998887 65422222
Q ss_pred CCceeeEEEE------eCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCC
Q 020688 167 MAHSHLGVVS------DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN 240 (322)
Q Consensus 167 ~~r~~~~~~~------~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~ 240 (322)
+...+=+. ++++|++.-+ ++... --++..|.++..=+++..-|.+. ++.+.+...|-+ .+..
T Consensus 102 --~~WaGEVSdIlYdP~~D~LLlAR~-DGh~n----LGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~ 169 (339)
T PF09910_consen 102 --TKWAGEVSDILYDPYEDRLLLARA-DGHAN----LGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFH 169 (339)
T ss_pred --cccccchhheeeCCCcCEEEEEec-CCcce----eeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccc
Confidence 22222221 3788887643 33332 24788899998888887666553 233333333322 2222
Q ss_pred CCCCCcceeEeEEeccccccccc--cccc--------C-C-CCCcceEEEEeCCEEEEE
Q 020688 241 RHTPGLEHWSIAVKDGKALEKAW--RTEI--------P-I-PRGGPHRFAGFPHVIYLS 287 (322)
Q Consensus 241 ~~~~~~~~~~i~~yd~~~~~~~W--~~~~--------p-~-pr~~~~~~~v~~~~iyi~ 287 (322)
...+ .+.|||.. +++| +... + . |+.+ .++..-++++.|
T Consensus 170 ~g~~-----~i~~~Dli--~~~~~~e~f~~~~s~Dg~~~~~~~~G--~~~s~ynR~faF 219 (339)
T PF09910_consen 170 KGVS-----GIHCLDLI--SGKWVIESFDVSLSVDGGPVIRPELG--AMASAYNRLFAF 219 (339)
T ss_pred cCCc-----eEEEEEcc--CCeEEEEecccccCCCCCceEeeccc--cEEEEeeeEEEE
Confidence 2222 45667764 8888 3211 1 1 3344 566666676665
No 89
>PRK00178 tolB translocation protein TolB; Provisional
Probab=78.57 E-value=64 Score=30.89 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=38.1
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~ 215 (322)
..++++|..+.+-+.+...+. .-........+++|++....++ ..+++++|..+.+..++...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g--~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~~ 285 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG--LNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTNH 285 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC--CcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEcccC
Confidence 468999998888777654432 1112222223456654432211 25799999999998887543
No 90
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=78.34 E-value=50 Score=30.28 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=60.2
Q ss_pred CEEEEEeec-C--CCCCcc-ceEEEEECCCC-----ceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceE
Q 020688 129 NLFYVFAGY-G--SLDYVH-SHVDVYNFTDN-----KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT 199 (322)
Q Consensus 129 ~~lyv~GG~-~--~~~~~~-~~v~~yd~~t~-----~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 199 (322)
...+++|.. . +..... ..+.+|+.... +.+.+..... +-.-.+++.++++|.+.-| +.+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~~~~lv~~~g----------~~l 109 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSFNGRLVVAVG----------NKL 109 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEETTEEEEEET----------TEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhhCCEEEEeec----------CEE
Confidence 456666643 2 111122 45888988774 5665554444 3456677778999666554 467
Q ss_pred EEEECCCCc-EEecCCCCCCCCCCeEEEECCEEEEEcc
Q 020688 200 FVLDSETRK-WDSIPPLPSPRYSPATQLWRGRLHVMGG 236 (322)
Q Consensus 200 ~~yD~~t~~-W~~~~~~p~~r~~~~~~~~~~~Lyi~GG 236 (322)
..|+...++ +...+.+..+-...++.+.++.|++..-
T Consensus 110 ~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~ 147 (321)
T PF03178_consen 110 YVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDA 147 (321)
T ss_dssp EEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEES
T ss_pred EEEEccCcccchhhheecceEEEEEEeccccEEEEEEc
Confidence 888888777 8888766655566677788887765533
No 91
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=76.89 E-value=45 Score=29.11 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=45.1
Q ss_pred CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCC--C-CCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEEC
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP--K-DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~--~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~ 204 (322)
++.+|+... ..+.++|+.+.+++.+...+ . +..+.+-.++.-+|.||+..-............++++++
T Consensus 51 ~g~l~v~~~--------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 51 DGRLYVADS--------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP 122 (246)
T ss_dssp TSEEEEEET--------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred CCEEEEEEc--------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence 678888754 22566799999998876652 1 224555555555888988642222111101157999999
Q ss_pred CCCcEEec
Q 020688 205 ETRKWDSI 212 (322)
Q Consensus 205 ~t~~W~~~ 212 (322)
. .+.+.+
T Consensus 123 ~-~~~~~~ 129 (246)
T PF08450_consen 123 D-GKVTVV 129 (246)
T ss_dssp T-SEEEEE
T ss_pred C-CeEEEE
Confidence 8 665555
No 92
>PRK13684 Ycf48-like protein; Provisional
Probab=75.44 E-value=70 Score=29.77 Aligned_cols=113 Identities=11% Similarity=0.142 Sum_probs=57.4
Q ss_pred CCCEEEcCCC-CCCcccceEEEE-CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEE
Q 020688 106 DLEWEQMPSA-PVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYI 183 (322)
Q Consensus 106 ~~~W~~~~~~-p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv 183 (322)
-..|+++... ..+.....+..+ ++.+|+.|.. ..+++=+-.-++|+.+.... .-..+.+....+..|+
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~---~g~~~~i~~~~~g~~v 187 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDA---AGVVRNLRRSPDGKYV 187 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCC---cceEEEEEECCCCeEE
Confidence 4589887532 122222233334 3446665532 22444444567899875433 2344555555554555
Q ss_pred EecccCCCCCCCCceEEE-EECCCCcEEecCCCCCCCCCCeEE-EECCEEEEEccC
Q 020688 184 VSGQYGPQCRGPTSRTFV-LDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGS 237 (322)
Q Consensus 184 ~GG~~~~~~~~~~~~~~~-yD~~t~~W~~~~~~p~~r~~~~~~-~~~~~Lyi~GG~ 237 (322)
+.|..+ .++. .|....+|+.+.. +..+.-.++. .-+++++++|..
T Consensus 188 ~~g~~G--------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 188 AVSSRG--------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred EEeCCc--------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecC
Confidence 544322 2222 2444567998854 3333333333 346788888753
No 93
>PRK05137 tolB translocation protein TolB; Provisional
Probab=71.97 E-value=97 Score=29.82 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=40.5
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p 216 (322)
..++++|+.+.+.+.+...+. ..........+.+|++....++ ..+++.+|..+.+-.++...+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~~ 289 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG--MTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDSP 289 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC--cccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCCC
Confidence 469999999988877765543 2223333334556655433222 357899999998887775433
No 94
>PRK04922 tolB translocation protein TolB; Provisional
Probab=71.16 E-value=1e+02 Score=29.69 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=38.0
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~ 214 (322)
..++++|..+.+-+.+...+. ..........+.+|++....++ ..+++.+|+.+.+-.++..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g--~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG--INGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC--CccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECcc
Confidence 458999998888777665543 1222223333556665433222 2479999999988777654
No 95
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=70.13 E-value=22 Score=32.64 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=68.6
Q ss_pred CEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCc-eeeCCCCCCCCCceeeEEEEeCCEEEEEec
Q 020688 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDRFDMPKDMAHSHLGVVSDGRYIYIVSG 186 (322)
Q Consensus 108 ~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG 186 (322)
+.+.+.....+-.-.+++.++++|.+..| +.+.+|+...++ +...+.+.. +-...++.+.++.|++. -
T Consensus 78 ~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~--~~~i~sl~~~~~~I~vg-D 146 (321)
T PF03178_consen 78 KLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDS--PFYITSLSVFKNYILVG-D 146 (321)
T ss_dssp EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-B--SSSEEEEEEETTEEEEE-E
T ss_pred EEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecc--eEEEEEEeccccEEEEE-E
Confidence 55555444444445566778899666555 458888887777 888777765 34667777788877653 2
Q ss_pred ccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEE-CCEEEEEcc
Q 020688 187 QYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGG 236 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~-~~~Lyi~GG 236 (322)
.. . .-.+..|+.+.++-..++.-..++...++..+ ++..++.+-
T Consensus 147 ~~--~----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 147 AM--K----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp SS--S----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred cc--c----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence 11 1 23466788877667777665566766666666 555444443
No 96
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=69.37 E-value=96 Score=28.71 Aligned_cols=170 Identities=14% Similarity=0.232 Sum_probs=74.4
Q ss_pred eEEEECCEEEEEeec--C--CCCCccceEEEEE-CCCCceeeCCC-C--CC---CCCceeeEEEEeCCEEEEEecccCCC
Q 020688 123 AAIQIKNLFYVFAGY--G--SLDYVHSHVDVYN-FTDNKWVDRFD-M--PK---DMAHSHLGVVSDGRYIYIVSGQYGPQ 191 (322)
Q Consensus 123 ~~~~~~~~lyv~GG~--~--~~~~~~~~v~~yd-~~t~~W~~~~~-~--~~---p~~r~~~~~~~~~~~iyv~GG~~~~~ 191 (322)
+.+.+++.|+++..- . ........+..+. ....+|+.... + .. -.....+..++-+++||++-|.....
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 567789999988763 1 1122222233343 35567876321 1 11 11235677777899999997765432
Q ss_pred CCCCCceEEEEEC--CCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCC------------CCCCCcc-eeEeEEecc
Q 020688 192 CRGPTSRTFVLDS--ETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN------------RHTPGLE-HWSIAVKDG 256 (322)
Q Consensus 192 ~~~~~~~~~~yD~--~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~------------~~~~~~~-~~~i~~yd~ 256 (322)
.......+..+.. ...+|.....++..-... .+.++-||-++- ......+ ..++.+|-.
T Consensus 83 ~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~------~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~ 156 (310)
T PF13859_consen 83 AGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQS------WKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYST 156 (310)
T ss_dssp -SSTTEEEEEEEEESSSSEE---EE-GGGS-EE------EEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEES
T ss_pred ccccccceeeeeccCCcceeeecccCCchhccc------cceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEEC
Confidence 2111334444432 233698876655322100 012444442110 0011222 467777854
Q ss_pred cccccccccccCCCCCcc--eEEEEe-CCEEEEEccccCCCCceEE
Q 020688 257 KALEKAWRTEIPIPRGGP--HRFAGF-PHVIYLSLVSSVEDLNFYV 299 (322)
Q Consensus 257 ~~~~~~W~~~~p~pr~~~--~~~~v~-~~~iyi~GG~~~e~~~~~~ 299 (322)
+ +...|+-..-++-.+| .+++-. +++|+++.-.+.-..++|.
T Consensus 157 d-~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~rrVYe 201 (310)
T PF13859_consen 157 D-DGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGRRRVYE 201 (310)
T ss_dssp S-TTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS---EEE
T ss_pred C-CccceEeccccCCCCcceEEEEeccCCeeEEEEecccceEEEEE
Confidence 3 4778996544444444 355566 8899988554433334443
No 97
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=67.08 E-value=1.4e+02 Score=31.42 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=21.7
Q ss_pred eEEEECCEEEEEeecCCCCCccceEEEEECCCCc--eeeCC
Q 020688 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRF 161 (322)
Q Consensus 123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 161 (322)
+-+++++.||+... .+.++.+|..|.+ |+.-.
T Consensus 189 TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 189 TPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred CCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcC
Confidence 34577999999854 2457788877655 77543
No 98
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=66.65 E-value=92 Score=31.65 Aligned_cols=88 Identities=25% Similarity=0.344 Sum_probs=53.0
Q ss_pred EcCCCCCCcccceEE--EE-CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCC---CCCCceeeEEEEeCCEEEEE
Q 020688 111 QMPSAPVPRLDGAAI--QI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP---KDMAHSHLGVVSDGRYIYIV 184 (322)
Q Consensus 111 ~~~~~p~~R~~~~~~--~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~---~p~~r~~~~~~~~~~~iyv~ 184 (322)
.+..+|..+...+.. .+ ++++++.. . ...+++.++.++.+-.++.+.. ...+.+......+++.|.++
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s----~--~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~ 493 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVS----K--NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAI 493 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEe----c--ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEE
Confidence 344555554333332 23 67777775 1 1234777777776655544332 21134455555578899888
Q ss_pred ecccCCCCCCCCceEEEEECCCCcEEecC
Q 020688 185 SGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 185 GG~~~~~~~~~~~~~~~yD~~t~~W~~~~ 213 (322)
++ ...+++|++++.+-..+.
T Consensus 494 ~t---------~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 494 ST---------RGQIFVYNLETLESHLLK 513 (691)
T ss_pred ec---------cceEEEEEcccceeecch
Confidence 74 467999999999877765
No 99
>smart00284 OLF Olfactomedin-like domains.
Probab=66.36 E-value=99 Score=27.76 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=63.5
Q ss_pred CCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCC-------CC---CceeeEEEEeCCEEEE
Q 020688 114 SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-------DM---AHSHLGVVSDGRYIYI 183 (322)
Q Consensus 114 ~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-------p~---~r~~~~~~~~~~~iyv 183 (322)
.+|.+-.+.+.+++++.||.--.. ...+.+||+.+++-.....+|. |- +-...-.++.++-|+|
T Consensus 69 ~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWv 142 (255)
T smart00284 69 PLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWV 142 (255)
T ss_pred ECCCccccccEEEECceEEEEecC------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEE
Confidence 455555677778899999974321 3569999999988654443442 00 1233456667777777
Q ss_pred EecccCCCCCCCCceEEEEECCCC----cEEecCCCCCCCCCCeEEEECCEEEEEc
Q 020688 184 VSGQYGPQCRGPTSRTFVLDSETR----KWDSIPPLPSPRYSPATQLWRGRLHVMG 235 (322)
Q Consensus 184 ~GG~~~~~~~~~~~~~~~yD~~t~----~W~~~~~~p~~r~~~~~~~~~~~Lyi~G 235 (322)
+=...+... .-.+-+.||.|- +|.. ..+.+..+.+.++| |.||+.-
T Consensus 143 IYat~~~~g---~ivvSkLnp~tL~ve~tW~T--~~~k~sa~naFmvC-GvLY~~~ 192 (255)
T smart00284 143 IYATEQNAG---KIVISKLNPATLTIENTWIT--TYNKRSASNAFMIC-GILYVTR 192 (255)
T ss_pred EEeccCCCC---CEEEEeeCcccceEEEEEEc--CCCcccccccEEEe-eEEEEEc
Confidence 722221111 123456777764 4655 34444444443444 8899985
No 100
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=65.38 E-value=1.4e+02 Score=29.02 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=56.1
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeE
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~ 224 (322)
.+++.+|..+++-.++..... .-...+....+.+|+-.-.+. + ...++++|++..+=+++..--.... ...
T Consensus 262 ~~iy~~dl~~~~~~~Lt~~~g--i~~~Ps~spdG~~ivf~Sdr~--G----~p~I~~~~~~g~~~~riT~~~~~~~-~p~ 332 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTNGFG--INTSPSWSPDGSKIVFTSDRG--G----RPQIYLYDLEGSQVTRLTFSGGGNS-NPV 332 (425)
T ss_pred ccEEEEcCCCCcceecccCCc--cccCccCCCCCCEEEEEeCCC--C----CcceEEECCCCCceeEeeccCCCCc-Ccc
Confidence 459999998887444444443 223444444566665553222 2 3479999999887666643222222 223
Q ss_pred EEECCEEEEEccCCCCCCCCCcceeEeEEecccccccc-cccc
Q 020688 225 QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA-WRTE 266 (322)
Q Consensus 225 ~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~-W~~~ 266 (322)
..-+|+.++|-+..+ .. |++..+|+. +.. |+..
T Consensus 333 ~SpdG~~i~~~~~~~------g~-~~i~~~~~~--~~~~~~~l 366 (425)
T COG0823 333 WSPDGDKIVFESSSG------GQ-WDIDKNDLA--SGGKIRIL 366 (425)
T ss_pred CCCCCCEEEEEeccC------Cc-eeeEEeccC--CCCcEEEc
Confidence 333454444444321 11 778888875 333 6643
No 101
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=65.09 E-value=1.3e+02 Score=28.66 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=54.2
Q ss_pred CCEEEcCCCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCC-----CCCCCceeeEEEEeCCEE
Q 020688 107 LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-----PKDMAHSHLGVVSDGRYI 181 (322)
Q Consensus 107 ~~W~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-----~~p~~r~~~~~~~~~~~i 181 (322)
+.|+.+..+ .-..--++.++|++|++.- . ..++.+|.+- +-.++.+. .....+...-.+...|+|
T Consensus 190 ~~Wt~l~~~--~~~~~DIi~~kGkfYAvD~---~----G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 190 NVLKALKQM--GYHFSDIIVHKGQTYALDS---I----GIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CeeeEccCC--CceeeEEEEECCEEEEEcC---C----CeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEE
Confidence 688888642 2234566788999999831 1 2366666321 11222211 100011233466677889
Q ss_pred EEEecccCCCCC---------CCCc--eEEEEECCCCcEEecCCCC
Q 020688 182 YIVSGQYGPQCR---------GPTS--RTFVLDSETRKWDSIPPLP 216 (322)
Q Consensus 182 yv~GG~~~~~~~---------~~~~--~~~~yD~~t~~W~~~~~~p 216 (322)
+++......... ..+. .++..|.+..+|.++..+.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 999875321100 0123 3445588888999997763
No 102
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=63.65 E-value=1.1e+02 Score=27.33 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=84.9
Q ss_pred CCCCCcccceEEEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCC----------CCCceeeEEEEeCCEEEE
Q 020688 114 SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK----------DMAHSHLGVVSDGRYIYI 183 (322)
Q Consensus 114 ~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~----------p~~r~~~~~~~~~~~iyv 183 (322)
.+|-+-.+.+.+++++.+|---. ..+.+.+||..+++-.....+|. ..+-...-.++.+.-|+|
T Consensus 64 ~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWv 137 (250)
T PF02191_consen 64 KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWV 137 (250)
T ss_pred EEeceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEE
Confidence 44555556677788998886432 24679999999988653223332 112234567777777888
Q ss_pred EecccCCCCCCCCceEEEEECCCC----cEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEeccccc
Q 020688 184 VSGQYGPQCRGPTSRTFVLDSETR----KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKAL 259 (322)
Q Consensus 184 ~GG~~~~~~~~~~~~~~~yD~~t~----~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~ 259 (322)
+=...+... .-.+-..||.+- +|.. ..+.+..+.+ .++=|.||++...+... .. -.-+||..
T Consensus 138 IYat~~~~g---~ivvskld~~tL~v~~tw~T--~~~k~~~~na-FmvCGvLY~~~s~~~~~----~~--I~yafDt~-- 203 (250)
T PF02191_consen 138 IYATEDNNG---NIVVSKLDPETLSVEQTWNT--SYPKRSAGNA-FMVCGVLYATDSYDTRD----TE--IFYAFDTY-- 203 (250)
T ss_pred EEecCCCCC---cEEEEeeCcccCceEEEEEe--ccCchhhcce-eeEeeEEEEEEECCCCC----cE--EEEEEECC--
Confidence 854433321 134556677654 5764 3444444444 44448899997654322 11 12356754
Q ss_pred cccccc-ccCCC-CCcceEEEEe---CCEEEEEc
Q 020688 260 EKAWRT-EIPIP-RGGPHRFAGF---PHVIYLSL 288 (322)
Q Consensus 260 ~~~W~~-~~p~p-r~~~~~~~v~---~~~iyi~G 288 (322)
+++=.. ..+.+ +...+++... +.+||+.-
T Consensus 204 t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 204 TGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred CCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 333222 12333 2221344433 78888873
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.31 E-value=87 Score=30.49 Aligned_cols=98 Identities=7% Similarity=0.002 Sum_probs=48.6
Q ss_pred EECCEEEEEeecCCCCCccceEEEEECCCCc-eeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEEC
Q 020688 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (322)
Q Consensus 126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~ 204 (322)
..+++|..+|+.. ..|.+||.++.. -+.+..-..| -..--.+..++.+++.|+-+. .+-.+|.
T Consensus 77 R~DG~LlaaGD~s------G~V~vfD~k~r~iLR~~~ah~ap--v~~~~f~~~d~t~l~s~sDd~--------v~k~~d~ 140 (487)
T KOG0310|consen 77 RSDGRLLAAGDES------GHVKVFDMKSRVILRQLYAHQAP--VHVTKFSPQDNTMLVSGSDDK--------VVKYWDL 140 (487)
T ss_pred ecCCeEEEccCCc------CcEEEeccccHHHHHHHhhccCc--eeEEEecccCCeEEEecCCCc--------eEEEEEc
Confidence 3478999998743 348899954421 1111111111 222223446889999886432 2333344
Q ss_pred CCCcEE-ecCCCCCCCCCCeEEEECCEEEEEccCCC
Q 020688 205 ETRKWD-SIPPLPSPRYSPATQLWRGRLHVMGGSKE 239 (322)
Q Consensus 205 ~t~~W~-~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~ 239 (322)
.+..=+ .+..-.--.....+...++.|++-||+++
T Consensus 141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCc
Confidence 333311 11111111112233345688999999765
No 104
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=58.27 E-value=36 Score=31.04 Aligned_cols=59 Identities=14% Similarity=0.275 Sum_probs=38.1
Q ss_pred eEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecC
Q 020688 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~ 213 (322)
.+++|||.+..|...+ +|...+|....-+--.++++..- ...+.+.+|||++.+.+.++
T Consensus 255 ~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~se--------a~agai~rfdpeta~ftv~p 313 (353)
T COG4257 255 SLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSE--------ADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeec--------cccCceeecCcccceEEEec
Confidence 5889999999998753 44322444333333356666531 11567899999998887763
No 105
>PRK01742 tolB translocation protein TolB; Provisional
Probab=56.63 E-value=1.9e+02 Score=27.78 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=31.0
Q ss_pred eEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEec
Q 020688 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI 212 (322)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~ 212 (322)
++|.+|..+.+.+++..-.. .-........+.+|+......+ ...++.+|..+..=..+
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~~--~~~~~~wSpDG~~i~f~s~~~g------~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGAG--NNTEPSWSPDGQSILFTSDRSG------SPQVYRMSASGGGASLV 331 (429)
T ss_pred EEEEEECCCCCeEeeccCCC--CcCCEEECCCCCEEEEEECCCC------CceEEEEECCCCCeEEe
Confidence 58899998887776654322 1122222223445555433222 24677777766543333
No 106
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=55.19 E-value=1.4e+02 Score=29.61 Aligned_cols=101 Identities=10% Similarity=0.013 Sum_probs=61.6
Q ss_pred CccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCC
Q 020688 142 YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS 221 (322)
Q Consensus 142 ~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~ 221 (322)
..++.++.+|+.+.+=-..+++.. ..+.++...++.+.+++|..+... -.+...|+.|-.=..-+..+..+..
T Consensus 372 ~~ls~LvllD~~tg~~l~~S~~~~---Ir~r~~~~~~~~~vaI~g~~G~~~----ikLvlid~~tLev~kes~~~i~~~S 444 (489)
T PF05262_consen 372 HYLSELVLLDSDTGDTLKRSPVNG---IRGRTFYEREDDLVAIAGCSGNAA----IKLVLIDPETLEVKKESEDEISWQS 444 (489)
T ss_pred CcceeEEEEeCCCCceecccccce---eccceeEEcCCCEEEEeccCCchh----eEEEecCcccceeeeeccccccccC
Confidence 357889999999986555556554 233445567888888888855442 3445557877655544444443332
Q ss_pred CeEEEECCEEEEEccCCCCCCCCCcceeEeEEeccc
Q 020688 222 PATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK 257 (322)
Q Consensus 222 ~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~ 257 (322)
.+.+.++.+|++=- .....|-+.+||.+
T Consensus 445 -~l~~~~~~iyaVv~-------~~~g~~~L~rF~~~ 472 (489)
T PF05262_consen 445 -SLIVDGQMIYAVVK-------KDNGKWYLGRFDSN 472 (489)
T ss_pred -ceEEcCCeEEEEEE-------cCCCeEEEeecCcc
Confidence 34556777886631 22334677777754
No 107
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=55.16 E-value=2.2e+02 Score=28.02 Aligned_cols=123 Identities=12% Similarity=0.087 Sum_probs=62.4
Q ss_pred eEEEEECCCCc--eeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCC--------C-CCCCceEEEEECCCC--cEEec
Q 020688 146 HVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQ--------C-RGPTSRTFVLDSETR--KWDSI 212 (322)
Q Consensus 146 ~v~~yd~~t~~--W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--------~-~~~~~~~~~yD~~t~--~W~~~ 212 (322)
.++.+|..+.+ |+.-.... .++...+.+|+-....... + ......+.++|..+. .|+.-
T Consensus 312 ~l~ald~~tG~~~W~~~~~~~--------~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 312 FFYVLDRTTGKLISARPEVEQ--------PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred eEEEEECCCCcEeeEeEeecc--------ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 48899998877 76522111 1112236777743211100 0 011357889998876 48775
Q ss_pred CCC-------CCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCcceEEEEeCCEEE
Q 020688 213 PPL-------PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRFAGFPHVIY 285 (322)
Q Consensus 213 ~~~-------p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~~~~iy 285 (322)
... ..+......++.++.||+. ..++ .+.++|.+..+..|+...+-+........+.++++|
T Consensus 384 ~~~~~~~~~~g~~~~~~~~~~~g~~v~~g-~~dG----------~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~y 452 (488)
T cd00216 384 EGTIRDSWNIGFPHWGGSLATAGNLVFAG-AADG----------YFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQY 452 (488)
T ss_pred CCccccccccCCcccCcceEecCCeEEEE-CCCC----------eEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEE
Confidence 320 0122222344555555554 3322 234556554466788655433333123345699999
Q ss_pred EE
Q 020688 286 LS 287 (322)
Q Consensus 286 i~ 287 (322)
|.
T Consensus 453 v~ 454 (488)
T cd00216 453 VG 454 (488)
T ss_pred EE
Confidence 97
No 108
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=54.15 E-value=1.7e+02 Score=28.65 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=17.2
Q ss_pred ECCEEEEEeecCCCCCccceEEEEECCCCc
Q 020688 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNK 156 (322)
Q Consensus 127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 156 (322)
.++.|++-||+++. +-.||..+.+
T Consensus 164 ~~~hivvtGsYDg~------vrl~DtR~~~ 187 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGK------VRLWDTRSLT 187 (487)
T ss_pred CCCeEEEecCCCce------EEEEEeccCC
Confidence 35678899998653 6667877763
No 109
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=54.12 E-value=1.7e+02 Score=29.24 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=54.8
Q ss_pred hhccCCCC--CCEEEcCCCCCC--------cccceEEEECCEEEEEeecCCCCCccceEEEEECCCCc--eeeCC-CCCC
Q 020688 99 FADLPAPD--LEWEQMPSAPVP--------RLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRF-DMPK 165 (322)
Q Consensus 99 ~~~~~~~~--~~W~~~~~~p~~--------R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~-~~~~ 165 (322)
++.+|..+ ..|+.-...+.. ....+.+..+++||+... ...++.+|.++.+ |+.-. .+..
T Consensus 81 v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W~~~~~~~~~ 153 (527)
T TIGR03075 81 VYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVWSKKNGDYKA 153 (527)
T ss_pred EEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEeecccccccc
Confidence 44556554 468764332211 112234566888886432 1358999998776 76532 1111
Q ss_pred CCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCc--EEe
Q 020688 166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDS 211 (322)
Q Consensus 166 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~--W~~ 211 (322)
. .....+-++.+++||+......... ...+..||.+|.+ |+.
T Consensus 154 ~-~~~tssP~v~~g~Vivg~~~~~~~~---~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 154 G-YTITAAPLVVKGKVITGISGGEFGV---RGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred c-ccccCCcEEECCEEEEeecccccCC---CcEEEEEECCCCceeEec
Confidence 0 1122334567888877533221111 4578999998874 764
No 110
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=53.66 E-value=1.9e+02 Score=26.99 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=51.8
Q ss_pred EEeCCEEEEEecccCCCCCCCCceEEEEECCCCc--EEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeE
Q 020688 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA 252 (322)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~--W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~ 252 (322)
+..++++|+.. . ...+.++|+++.+ |+....--..........-+|+||+-... + .+.
T Consensus 65 ~~~dg~v~~~~---~------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~-g----------~~y 124 (370)
T COG1520 65 ADGDGTVYVGT---R------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD-G----------KLY 124 (370)
T ss_pred EeeCCeEEEec---C------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc-c----------eEE
Confidence 66789999871 1 2368999999876 97653320011112223337887665432 2 344
Q ss_pred EecccccccccccccCC-CCCcceEEEEeCCEEEEE
Q 020688 253 VKDGKALEKAWRTEIPI-PRGGPHRFAGFPHVIYLS 287 (322)
Q Consensus 253 ~yd~~~~~~~W~~~~p~-pr~~~~~~~v~~~~iyi~ 287 (322)
++|....+..|....+- ++.. ..+++.++.+|+.
T Consensus 125 ~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~ 159 (370)
T COG1520 125 ALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVG 159 (370)
T ss_pred EEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEe
Confidence 66664357788876555 3333 2444556666655
No 111
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=53.54 E-value=1.4e+02 Score=29.38 Aligned_cols=92 Identities=15% Similarity=0.231 Sum_probs=50.0
Q ss_pred EEEeCCEEEEEecccCCCCCCCCceEEEEECCCC--cEEecCCCCCCC-----CCCeEEEEC-CEEEEEccCCCCCCCCC
Q 020688 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPR-----YSPATQLWR-GRLHVMGGSKENRHTPG 245 (322)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~--~W~~~~~~p~~r-----~~~~~~~~~-~~Lyi~GG~~~~~~~~~ 245 (322)
.++.+++||+... ...+.++|.+|. .|+.-...+..+ .....++.+ +++|+... ++
T Consensus 57 Pvv~~g~vy~~~~---------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~g------ 120 (488)
T cd00216 57 PLVVDGDMYFTTS---------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-DG------ 120 (488)
T ss_pred CEEECCEEEEeCC---------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-CC------
Confidence 3577999998643 245889998875 488643322101 111234556 77776432 11
Q ss_pred cceeEeEEecccccccccccccCCCC-----CcceEEEEeCCEEEE
Q 020688 246 LEHWSIAVKDGKALEKAWRTEIPIPR-----GGPHRFAGFPHVIYL 286 (322)
Q Consensus 246 ~~~~~i~~yd~~~~~~~W~~~~p~pr-----~~~~~~~v~~~~iyi 286 (322)
.+.++|.+..+..|+.....+. .. .+.++.++.+|+
T Consensus 121 ----~v~AlD~~TG~~~W~~~~~~~~~~~~~i~-ssP~v~~~~v~v 161 (488)
T cd00216 121 ----RLVALDAETGKQVWKFGNNDQVPPGYTMT-GAPTIVKKLVII 161 (488)
T ss_pred ----eEEEEECCCCCEeeeecCCCCcCcceEec-CCCEEECCEEEE
Confidence 3445565544667886544331 12 244555666554
No 112
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=53.41 E-value=1.8e+02 Score=26.44 Aligned_cols=129 Identities=11% Similarity=-0.026 Sum_probs=60.3
Q ss_pred CCCEEEc--CCCCC-------CcccceEEEECCEEEEEeecCCCCCccce-EEEEE-----CCCCceeeCCCCCCCCCce
Q 020688 106 DLEWEQM--PSAPV-------PRLDGAAIQIKNLFYVFAGYGSLDYVHSH-VDVYN-----FTDNKWVDRFDMPKDMAHS 170 (322)
Q Consensus 106 ~~~W~~~--~~~p~-------~R~~~~~~~~~~~lyv~GG~~~~~~~~~~-v~~yd-----~~t~~W~~~~~~~~p~~r~ 170 (322)
.+.|+.. +.+|. ...-|+.+.+++.-|.+|=.++.-....- +..|. |..-.=+.++.- ....-+
T Consensus 114 ~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se-y~~~As 192 (367)
T PF12217_consen 114 DSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE-YERNAS 192 (367)
T ss_dssp TS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GG-G-TTEE
T ss_pred cCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhh-hccccc
Confidence 4678653 33332 23468888998888888844332211110 11121 111111122221 111345
Q ss_pred eeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecC-CCCCCCCCCeEEEECCEEEEEccC
Q 020688 171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWRGRLHVMGGS 237 (322)
Q Consensus 171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~-~~p~~r~~~~~~~~~~~Lyi~GG~ 237 (322)
-.++-.++++||+..-....... -+.+.+-+..-..|+.+. +-.......-.+..++.||+||-.
T Consensus 193 EPCvkyY~g~LyLtTRgt~~~~~--GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 193 EPCVKYYDGVLYLTTRGTLPTNP--GSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EEEEEEETTEEEEEEEES-TTS-----EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-
T ss_pred cchhhhhCCEEEEEEcCcCCCCC--cceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecc
Confidence 56666789999998644333221 456777777778899873 222233344557889999999863
No 113
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=52.73 E-value=1.4e+02 Score=25.18 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=46.6
Q ss_pred CEEEEEeecCCCCCccceEEEEECCCCceee---CCCCCCCC--CceeeEEEEe-CCEEEEEecccCCCCCCCCceEEEE
Q 020688 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD---RFDMPKDM--AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVL 202 (322)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~---~~~~~~p~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~y 202 (322)
+++|+|-| +..|+||..+..+.. +...+.|. ..-..+...- ++++|++.| +..++|
T Consensus 63 ~~~yfFkg--------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg----------~~y~ry 124 (194)
T cd00094 63 GKIYFFKG--------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG----------DKYWRY 124 (194)
T ss_pred CEEEEECC--------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC----------CEEEEE
Confidence 79999976 357888765422211 11111110 1122222222 689999976 457778
Q ss_pred ECCCCcEEec---------CCCCCCCCCCeEEEEC-CEEEEEccC
Q 020688 203 DSETRKWDSI---------PPLPSPRYSPATQLWR-GRLHVMGGS 237 (322)
Q Consensus 203 D~~t~~W~~~---------~~~p~~r~~~~~~~~~-~~Lyi~GG~ 237 (322)
|..+++-..- +.+| ..-.++.... +++|+|-|.
T Consensus 125 ~~~~~~v~~~yP~~i~~~w~g~p--~~idaa~~~~~~~~yfF~g~ 167 (194)
T cd00094 125 DEKTQKMDPGYPKLIETDFPGVP--DKVDAAFRWLDGYYYFFKGD 167 (194)
T ss_pred eCCCccccCCCCcchhhcCCCcC--CCcceeEEeCCCcEEEEECC
Confidence 7655543211 1222 2223444455 889999774
No 114
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=52.67 E-value=1.1e+02 Score=25.06 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=50.3
Q ss_pred EEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCC----CCeE-EEECCEEEEEccCCCCCCCCCccee
Q 020688 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY----SPAT-QLWRGRLHVMGGSKENRHTPGLEHW 249 (322)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~----~~~~-~~~~~~Lyi~GG~~~~~~~~~~~~~ 249 (322)
+.++|.+|=++-...... ...+..||..+.+..+.-++|.... ...+ ++.+++|-++--. ......+.|
T Consensus 2 V~vnG~~hW~~~~~~~~~---~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~---~~~~~~~IW 75 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE---KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC---DETSKIEIW 75 (164)
T ss_pred EEECCEEEeeEEecCCCC---ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec---cCCccEEEE
Confidence 456888877765443332 1268999999999943334443322 1222 2236777777321 122358889
Q ss_pred EeEEecccccccccccc
Q 020688 250 SIAVKDGKALEKAWRTE 266 (322)
Q Consensus 250 ~i~~yd~~~~~~~W~~~ 266 (322)
....|+.. ...|++.
T Consensus 76 vm~~~~~~--~~SWtK~ 90 (164)
T PF07734_consen 76 VMKKYGYG--KESWTKL 90 (164)
T ss_pred EEeeeccC--cceEEEE
Confidence 88777654 7789974
No 115
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=51.83 E-value=31 Score=20.87 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=17.0
Q ss_pred eEEEEeCCEEEEEecccCCCCCCCCceEEEEECCC
Q 020688 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (322)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t 206 (322)
.+.++.++.+|+.+. ...++++|++|
T Consensus 15 ~~~~v~~g~vyv~~~---------dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG---------DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T---------TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC---------CCEEEEEeCCC
Confidence 344778999998764 35788998865
No 116
>PRK02889 tolB translocation protein TolB; Provisional
Probab=50.31 E-value=2.4e+02 Score=27.08 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=35.8
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~ 214 (322)
..++++|..+.+=..+...+. ..........+++|++....++ ..+++.+|..+....++..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG--SNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEEccCC------CceEEEEECCCCCcEECCC
Confidence 459999998876555544332 1122222223456655443222 3578999998877777643
No 117
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=49.59 E-value=21 Score=22.84 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhccC
Q 020688 18 WFLCVLGLLGAALIADFMWASSS 40 (322)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~s~ 40 (322)
+++.+.+++++..+..|+|+.-+
T Consensus 5 ~lip~sl~l~~~~l~~f~Wavk~ 27 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLWAVKS 27 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 45557778888999999999863
No 118
>PRK04043 tolB translocation protein TolB; Provisional
Probab=45.62 E-value=2.9e+02 Score=26.65 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=48.3
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeE
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~ 224 (322)
.++|++|..+.+=+.+...+. .-........+.+|.+.-...+ ..+++.+|..+.+++++...+..-..+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~ 284 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG--MLVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKTLTQITNYPGIDVNGNF 284 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC--cEEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCcEEEcccCCCccCccEE
Confidence 369999998887666665332 1122233334556665543321 36899999999999998655431112222
Q ss_pred EEECCEEEEEcc
Q 020688 225 QLWRGRLHVMGG 236 (322)
Q Consensus 225 ~~~~~~Lyi~GG 236 (322)
...+.+|+..-.
T Consensus 285 SPDG~~I~F~Sd 296 (419)
T PRK04043 285 VEDDKRIVFVSD 296 (419)
T ss_pred CCCCCEEEEEEC
Confidence 223446666643
No 119
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=43.15 E-value=2.8e+02 Score=25.86 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=69.4
Q ss_pred EEECCEEEEEeecCCCCCccceEEEEECCCCc--eeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEE
Q 020688 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (322)
Q Consensus 125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y 202 (322)
+..++++|+.. .++ .+..+|+.+.+ |+....... .........-+|+||+-.. ...+++|
T Consensus 65 ~~~dg~v~~~~-~~G------~i~A~d~~~g~~~W~~~~~~~~--~~~~~~~~~~~G~i~~g~~---------~g~~y~l 126 (370)
T COG1520 65 ADGDGTVYVGT-RDG------NIFALNPDTGLVKWSYPLLGAV--AQLSGPILGSDGKIYVGSW---------DGKLYAL 126 (370)
T ss_pred EeeCCeEEEec-CCC------cEEEEeCCCCcEEecccCcCcc--eeccCceEEeCCeEEEecc---------cceEEEE
Confidence 56688999861 111 48899998877 865332100 1111122233788887532 1268999
Q ss_pred ECCCC--cEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCC--CCCcceEEE
Q 020688 203 DSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI--PRGGPHRFA 278 (322)
Q Consensus 203 D~~t~--~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~--pr~~~~~~~ 278 (322)
|..+. .|+.-.+.. ++..-..++.++.+|+.-. +. .+.+.|....+..|+...+. +-..+....
T Consensus 127 d~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~--------~g---~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~ 194 (370)
T COG1520 127 DASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGTD--------DG---HLYALNADTGTLKWTYETPAPLSLSIYGSPA 194 (370)
T ss_pred ECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEecC--------CC---eEEEEEccCCcEEEEEecCCccccccccCce
Confidence 99644 588764442 3333444555666666531 11 12233433346678754332 211112333
Q ss_pred EeCCEEEEEc
Q 020688 279 GFPHVIYLSL 288 (322)
Q Consensus 279 v~~~~iyi~G 288 (322)
+.++.+|+-.
T Consensus 195 ~~~~~vy~~~ 204 (370)
T COG1520 195 IASGTVYVGS 204 (370)
T ss_pred eecceEEEec
Confidence 5566666653
No 120
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=43.05 E-value=30 Score=22.81 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhcc
Q 020688 18 WFLCVLGLLGAALIADFMWASS 39 (322)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~s 39 (322)
+++-+.+++|+..+..|+|+.-
T Consensus 6 ~LIpiSl~l~~~~l~~f~Wavk 27 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLWSLK 27 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4445667888899999999975
No 121
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=42.48 E-value=2.1e+02 Score=24.18 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=46.0
Q ss_pred CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCC
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~ 207 (322)
++++.|+-|... ..+..||.+. ..+..++.. ++ +...-.-+|++.++||.... ..+++.||..
T Consensus 71 g~~favi~g~~~-----~~v~lyd~~~---~~i~~~~~~-~~-n~i~wsP~G~~l~~~g~~n~-----~G~l~~wd~~-- 133 (194)
T PF08662_consen 71 GNEFAVIYGSMP-----AKVTLYDVKG---KKIFSFGTQ-PR-NTISWSPDGRFLVLAGFGNL-----NGDLEFWDVR-- 133 (194)
T ss_pred CCEEEEEEccCC-----cccEEEcCcc---cEeEeecCC-Cc-eEEEECCCCCEEEEEEccCC-----CcEEEEEECC--
Confidence 566767655321 2488899863 333333321 22 22122236777778876432 2468899987
Q ss_pred cEEecCCCCCCCCCCeEEEE--CCEEEEEcc
Q 020688 208 KWDSIPPLPSPRYSPATQLW--RGRLHVMGG 236 (322)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~~--~~~Lyi~GG 236 (322)
+.+.+.....+. ...+.+ +|+.++...
T Consensus 134 ~~~~i~~~~~~~--~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 134 KKKKISTFEHSD--ATDVEWSPDGRYLATAT 162 (194)
T ss_pred CCEEeeccccCc--EEEEEEcCCCCEEEEEE
Confidence 445554433222 222333 566555544
No 122
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=42.34 E-value=2.7e+02 Score=25.33 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=37.4
Q ss_pred CEEEEEeecCCCCCccceEEEEECCC-CceeeCCCCCCCCCceeeEEEE--eCCEEEEEecccCCCCCCCCceEEEEECC
Q 020688 129 NLFYVFAGYGSLDYVHSHVDVYNFTD-NKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (322)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yD~~ 205 (322)
.++|+..+.+ ..+.+||..+ .+++.+...+. ......++. .+..||+.+.. ...+..|+..
T Consensus 2 ~~~y~~~~~~------~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~--------~~~i~~~~~~ 65 (330)
T PRK11028 2 QIVYIASPES------QQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRP--------EFRVLSYRIA 65 (330)
T ss_pred eEEEEEcCCC------CCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECC--------CCcEEEEEEC
Confidence 3577775432 3477777753 46665544433 112222333 35567875431 2456667765
Q ss_pred -CCcEEecCCCC
Q 020688 206 -TRKWDSIPPLP 216 (322)
Q Consensus 206 -t~~W~~~~~~p 216 (322)
+.+++.+...+
T Consensus 66 ~~g~l~~~~~~~ 77 (330)
T PRK11028 66 DDGALTFAAESP 77 (330)
T ss_pred CCCceEEeeeec
Confidence 45676554333
No 123
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=41.95 E-value=79 Score=29.65 Aligned_cols=70 Identities=24% Similarity=0.313 Sum_probs=39.6
Q ss_pred CCEEEEEe---ecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEe-CC--EEEEEecccCCCCCCCCceEEE
Q 020688 128 KNLFYVFA---GYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GR--YIYIVSGQYGPQCRGPTSRTFV 201 (322)
Q Consensus 128 ~~~lyv~G---G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~-~~--~iyv~GG~~~~~~~~~~~~~~~ 201 (322)
.++|||.- +....+..-..+|+||+++.+--..-++.. ..-++.+- ++ .||.+-+. ...+.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~----~~~Si~Vsqd~~P~L~~~~~~--------~~~l~v 316 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH----PIDSIAVSQDDKPLLYALSAG--------DGTLDV 316 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE----EESEEEEESSSS-EEEEEETT--------TTEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC----ccceEEEccCCCcEEEEEcCC--------CCeEEE
Confidence 57899863 223344455679999999987544444433 22233433 33 46655321 357999
Q ss_pred EECCCCcE
Q 020688 202 LDSETRKW 209 (322)
Q Consensus 202 yD~~t~~W 209 (322)
||..|.+=
T Consensus 317 ~D~~tGk~ 324 (342)
T PF06433_consen 317 YDAATGKL 324 (342)
T ss_dssp EETTT--E
T ss_pred EeCcCCcE
Confidence 99998753
No 124
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=40.30 E-value=29 Score=28.24 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=14.7
Q ss_pred ccccccchh-hHHHHHHHHHHHHHHHhhcc
Q 020688 11 TYTKTGCWF-LCVLGLLGAALIADFMWASS 39 (322)
Q Consensus 11 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s 39 (322)
-|+++.+++ +++++|+++.+ .|+ +..+
T Consensus 4 IR~r~~lLi~vIglAL~aFIv-~d~-~~~~ 31 (145)
T PF13623_consen 4 IRQRGGLLIIVIGLALFAFIV-GDF-RSGS 31 (145)
T ss_pred HhhcchHHHHHHHHHHHHHHH-HHH-hccC
Confidence 466776633 44455555555 787 4433
No 125
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=39.78 E-value=1.5e+02 Score=27.98 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=40.4
Q ss_pred CCEEEEEe-e--cCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEE--eCC-EEEEEecccCCCCCCCCceEEE
Q 020688 128 KNLFYVFA-G--YGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGR-YIYIVSGQYGPQCRGPTSRTFV 201 (322)
Q Consensus 128 ~~~lyv~G-G--~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~--~~~-~iyv~GG~~~~~~~~~~~~~~~ 201 (322)
++++||.. | ........+.++++|..+.+=. ...+. .+.-+++++ .+. .||+.-+. .+++.+
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi--~~i~v--G~~~~~iavS~Dgkp~lyvtn~~--------s~~VsV 326 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL--RKIEL--GHEIDSINVSQDAKPLLYALSTG--------DKTLYI 326 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEE--EEEeC--CCceeeEEECCCCCeEEEEeCCC--------CCcEEE
Confidence 67899842 2 1222233467999998776543 33333 233334444 345 67776442 467899
Q ss_pred EECCCCc
Q 020688 202 LDSETRK 208 (322)
Q Consensus 202 yD~~t~~ 208 (322)
+|..+.+
T Consensus 327 iD~~t~k 333 (352)
T TIGR02658 327 FDAETGK 333 (352)
T ss_pred EECcCCe
Confidence 9988764
No 126
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=39.62 E-value=3.1e+02 Score=25.29 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=65.5
Q ss_pred CCCEEEcC-CCCCCcccceEEEE-CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEE-eCCEEE
Q 020688 106 DLEWEQMP-SAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIY 182 (322)
Q Consensus 106 ~~~W~~~~-~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~-~~~~iy 182 (322)
-..|++++ +.+.|...+.+..+ ++.++++|.. ..+++=.=.-.+|+.+..-.. .....+.. -+++++
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~---gs~~~~~r~~dG~~v 159 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETS---GSINDITRSSDGRYV 159 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S-------EEEEEE-TTS-EE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCc---ceeEeEEECCCCcEE
Confidence 67999985 22344444444444 5677776532 235554445678988654332 23333333 355655
Q ss_pred EEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccc
Q 020688 183 IVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA 262 (322)
Q Consensus 183 v~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~ 262 (322)
+++. .+ +-+...|+-...|+........|-..-...-++.|++.. ..+.-. .-+......+
T Consensus 160 avs~-~G-------~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~----------~s~~~~~~~~ 220 (302)
T PF14870_consen 160 AVSS-RG-------NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQ----------FSDDPDDGET 220 (302)
T ss_dssp EEET-TS-------SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEE----------EEE-TTEEEE
T ss_pred EEEC-cc-------cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEE----------EccCCCCccc
Confidence 5542 11 234567888888988854433332222234467787765 222111 1110013567
Q ss_pred cccc-cCCCCCc--ceEEEEe-CCEEEEEcccc
Q 020688 263 WRTE-IPIPRGG--PHRFAGF-PHVIYLSLVSS 291 (322)
Q Consensus 263 W~~~-~p~pr~~--~~~~~v~-~~~iyi~GG~~ 291 (322)
|.+. .|++..+ ...++.. ++.+++.||..
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 7763 3333333 1233333 68899988854
No 127
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=39.24 E-value=3.1e+02 Score=25.25 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCCEEEcCCCCCCcccceEEEE-CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCC-CCCceeeEEEEeCCEEEE
Q 020688 106 DLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVSDGRYIYI 183 (322)
Q Consensus 106 ~~~W~~~~~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-p~~r~~~~~~~~~~~iyv 183 (322)
...|+.+.. |....-..+... .+.-|++|-. ..+..=+=.-.+|+....-.. +......++...++..||
T Consensus 5 ~~~W~~v~l-~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~i 76 (302)
T PF14870_consen 5 GNSWQQVSL-PTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWI 76 (302)
T ss_dssp S--EEEEE--S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEE
T ss_pred CCCcEEeec-CCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEE
Confidence 578998853 333333344444 5688888743 223222224467988653221 101223344456888999
Q ss_pred EecccCCCCCCCCceEEEEECCCCcEEecC-CCCCCCCCCeEE-EECCEEEEEcc
Q 020688 184 VSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQ-LWRGRLHVMGG 236 (322)
Q Consensus 184 ~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~-~~p~~r~~~~~~-~~~~~Lyi~GG 236 (322)
+|-. .-+..-.-.-.+|++++ +.+.|.....+. .-++.++++|.
T Consensus 77 vG~~---------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~ 122 (302)
T PF14870_consen 77 VGEP---------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGD 122 (302)
T ss_dssp EEET---------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEET
T ss_pred EcCC---------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcC
Confidence 8731 22333333456899985 222333333333 34566777764
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=38.83 E-value=4.4e+02 Score=27.03 Aligned_cols=151 Identities=9% Similarity=0.117 Sum_probs=69.4
Q ss_pred eEEEEECCCCceeeCCCCCCCCCceeeEEEEe--CCEEEEEecccCCCCCCCCceEEEEECC--CCcEEecCCCC-CCCC
Q 020688 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE--TRKWDSIPPLP-SPRY 220 (322)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yD~~--t~~W~~~~~~p-~~r~ 220 (322)
.|-.+|+...+-.+-..... + .-.++++. ++++++ +|.+ ..+..|-.. +++|....... .++.
T Consensus 226 ~V~FWd~~~gTLiqS~~~h~--a-dVl~Lav~~~~d~vfs-aGvd--------~~ii~~~~~~~~~~wv~~~~r~~h~hd 293 (691)
T KOG2048|consen 226 TVTFWDSIFGTLIQSHSCHD--A-DVLALAVADNEDRVFS-AGVD--------PKIIQYSLTTNKSEWVINSRRDLHAHD 293 (691)
T ss_pred eEEEEcccCcchhhhhhhhh--c-ceeEEEEcCCCCeEEE-ccCC--------CceEEEEecCCccceeeeccccCCccc
Confidence 36666766665433211111 1 22334443 345554 4443 345555544 44698875432 3455
Q ss_pred CCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCcceEEEEeCCEEEEEcc-ccCCCCce--
Q 020688 221 SPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRFAGFPHVIYLSLV-SSVEDLNF-- 297 (322)
Q Consensus 221 ~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~~~~iyi~GG-~~~e~~~~-- 297 (322)
--+++++++ ..+.||.+..-+........ .+| =.+..+.|+.. -..+.-.++++++-- ...+.-.+
T Consensus 294 vrs~av~~~-~l~sgG~d~~l~i~~s~~~~--~~~-------h~~~~~~p~~~-~v~~a~~~~L~~~w~~h~v~lwrlGS 362 (691)
T KOG2048|consen 294 VRSMAVIEN-ALISGGRDFTLAICSSREFK--NMD-------HRQKNLFPASD-RVSVAPENRLLVLWKAHGVDLWRLGS 362 (691)
T ss_pred ceeeeeecc-eEEecceeeEEEEccccccC--chh-------hhccccccccc-eeecCccceEEEEeccccccceeccC
Confidence 556777777 77788875433222111100 001 01223334444 344445677777631 11111111
Q ss_pred EEeeccccccceeEEEecCCCC
Q 020688 298 YVIQVPWEYNFKFRITIPDHEK 319 (322)
Q Consensus 298 ~~~q~~~~~~~~~~~~~~~~~~ 319 (322)
..-|=..+|-+.+.|+++|+|+
T Consensus 363 ~~~~g~~~~~~Llkl~~k~~~n 384 (691)
T KOG2048|consen 363 VILQGEYNYIHLLKLFTKEKEN 384 (691)
T ss_pred cccccccChhhheeeecCCccc
Confidence 1112244455667777777765
No 129
>PRK03629 tolB translocation protein TolB; Provisional
Probab=38.21 E-value=3.7e+02 Score=25.81 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=37.8
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~ 215 (322)
..++++|..+.+-+.+...+. .-........+.+|++.....+ ..+++.+|..+.+..++...
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~--~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~ 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDG 285 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC--CcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCC
Confidence 458888888777666655443 1122233334556665543221 24699999999888877543
No 130
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=37.31 E-value=40 Score=22.78 Aligned_cols=21 Identities=38% Similarity=0.630 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHhhcc
Q 020688 19 FLCVLGLLGAALIADFMWASS 39 (322)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~s 39 (322)
++-+..++++.-+..|||+--
T Consensus 7 Lipvsi~l~~v~l~~flWavk 27 (58)
T COG3197 7 LIPVSILLGAVGLGAFLWAVK 27 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344555677788899999986
No 131
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.93 E-value=3.6e+02 Score=24.99 Aligned_cols=94 Identities=15% Similarity=0.042 Sum_probs=55.2
Q ss_pred CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCC
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~ 207 (322)
+++|++.-+- +.. .--+|..|..+..=+.+..-|.+ -++.+.+..+|-+ ...... ...+++||+.++
T Consensus 117 ~D~LLlAR~D-Gh~--nLGvy~ldr~~g~~~~L~~~ps~-----KG~~~~D~a~F~i--~~~~~g---~~~i~~~Dli~~ 183 (339)
T PF09910_consen 117 EDRLLLARAD-GHA--NLGVYSLDRRTGKAEKLSSNPSL-----KGTLVHDYACFGI--NNFHKG---VSGIHCLDLISG 183 (339)
T ss_pred cCEEEEEecC-Ccc--eeeeEEEcccCCceeeccCCCCc-----CceEeeeeEEEec--cccccC---CceEEEEEccCC
Confidence 5788776542 222 22488899888888877665542 2344455444433 222222 678999999999
Q ss_pred cE--EecCC------CCC-CCCCCeEEEECCEEEEE
Q 020688 208 KW--DSIPP------LPS-PRYSPATQLWRGRLHVM 234 (322)
Q Consensus 208 ~W--~~~~~------~p~-~r~~~~~~~~~~~Lyi~ 234 (322)
+| +..+. -+. .|..-.++...+++|.|
T Consensus 184 ~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 184 KWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred eEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 99 44421 011 22334456677777776
No 132
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=35.77 E-value=3.8e+02 Score=25.27 Aligned_cols=77 Identities=18% Similarity=0.072 Sum_probs=43.4
Q ss_pred CEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCC-CCCCCceEEEEECCCC
Q 020688 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQ-CRGPTSRTFVLDSETR 207 (322)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~yD~~t~ 207 (322)
..+||.-..... ..+.+.++|..+.+-...-+... .||. .+...+..|||.-.+.... .......+.+||++|.
T Consensus 13 ~~v~V~d~~~~~--~~~~v~ViD~~~~~v~g~i~~G~-~P~~--~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 13 RRVYVLDPGHFA--ATTQVYTIDGEAGRVLGMTDGGF-LPNP--VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CEEEEECCcccc--cCceEEEEECCCCEEEEEEEccC-CCce--eECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 457776442111 12679999988866433222221 1343 3555678899997632111 1112578999999997
Q ss_pred cEE
Q 020688 208 KWD 210 (322)
Q Consensus 208 ~W~ 210 (322)
+=.
T Consensus 88 ~~~ 90 (352)
T TIGR02658 88 LPI 90 (352)
T ss_pred cEE
Confidence 643
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=34.98 E-value=3e+02 Score=23.81 Aligned_cols=64 Identities=23% Similarity=0.421 Sum_probs=34.3
Q ss_pred CEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCc
Q 020688 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (322)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~ 208 (322)
+.+|+.++. .+.+.+||..+.+....-+.... ++ .......++.+|+.++. ...+.+||+.+.+
T Consensus 43 ~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-~~-~~~~~~~g~~l~~~~~~--------~~~l~~~d~~~~~ 106 (300)
T TIGR03866 43 KLLYVCASD------SDTIQVIDLATGEVIGTLPSGPD-PE-LFALHPNGKILYIANED--------DNLVTVIDIETRK 106 (300)
T ss_pred CEEEEEECC------CCeEEEEECCCCcEEEeccCCCC-cc-EEEECCCCCEEEEEcCC--------CCeEEEEECCCCe
Confidence 457777653 23588899988776542222210 11 11111124567776532 2458888887753
No 134
>PRK01742 tolB translocation protein TolB; Provisional
Probab=34.51 E-value=4.2e+02 Score=25.36 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=33.3
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~ 213 (322)
..++++|..+.+-+.+...+. ..........+.+|++....++ ..+++.+|..+....++.
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g--~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRG--HNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLT 288 (429)
T ss_pred cEEEEEeCCCCceEEEecCCC--ccCceeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeec
Confidence 358889988776555554432 1112222223345554432221 245888898887777664
No 135
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=33.76 E-value=1.6e+02 Score=26.49 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEe-CCEEEEEecccCCCCCCCCceEEEEECCC
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yD~~t 206 (322)
+..+||.||.+.- ++.||..|..=...-.... .-.-|++-.- +|.+|..|..++ +-.+|+-.+..
T Consensus 235 ~k~~fVaGged~~------~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDG------TirlWQt~~~~ 300 (334)
T KOG0278|consen 235 KKEFFVAGGEDFK------VYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDG------TIRLWQTTPGK 300 (334)
T ss_pred CCceEEecCcceE------EEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCc------eEEEEEecCCC
No 136
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=33.16 E-value=3.9e+02 Score=24.63 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=35.6
Q ss_pred CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCC--CCCceeeEEEEe-CCEEEEEecccCCCCCCCCceEEEEEC
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK--DMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yD~ 204 (322)
.+.....||.+ |.+-+|+..+..=+...++.. +......++|.+ ++.-.+.|. . ..++-.+|.
T Consensus 108 Sg~~VAcGGLd------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~S-G-------D~TCalWDi 173 (343)
T KOG0286|consen 108 SGNFVACGGLD------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGS-G-------DMTCALWDI 173 (343)
T ss_pred CCCeEEecCcC------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecC-C-------CceEEEEEc
Confidence 56777899864 446778877553222222211 113455555554 333333331 1 235666777
Q ss_pred CCCcEEe
Q 020688 205 ETRKWDS 211 (322)
Q Consensus 205 ~t~~W~~ 211 (322)
++.+=.+
T Consensus 174 e~g~~~~ 180 (343)
T KOG0286|consen 174 ETGQQTQ 180 (343)
T ss_pred ccceEEE
Confidence 7765443
No 137
>PRK01029 tolB translocation protein TolB; Provisional
Probab=33.14 E-value=4.1e+02 Score=25.57 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=37.2
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEecC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~ 213 (322)
.++++||+.+.+.+.+...+. .-........+..|+......+ ...++.+|..+.+..++.
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~~~--~~~~p~wSpDG~~L~f~~~~~g------~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTSPE--NKESPSWAIDSLHLVYSAGNSN------ESELYLISLITKKTRKIV 411 (428)
T ss_pred cEEEEEECCCCCeEEccCCCC--CccceEECCCCCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 468999999998887764332 1122333333445555443211 357889999888877774
No 138
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=32.96 E-value=3.9e+02 Score=24.56 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=59.7
Q ss_pred EECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCC-CCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEEC
Q 020688 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD-MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (322)
Q Consensus 126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~ 204 (322)
.-++.||+..= .-+-+-+.||.+..=+.++ .|.+ ..-+.-..+--.+.+++.- .. ...+.+|||
T Consensus 197 tpdGsvwyasl------agnaiaridp~~~~aev~p-~P~~~~~gsRriwsdpig~~witt-----wg---~g~l~rfdP 261 (353)
T COG4257 197 TPDGSVWYASL------AGNAIARIDPFAGHAEVVP-QPNALKAGSRRIWSDPIGRAWITT-----WG---TGSLHRFDP 261 (353)
T ss_pred CCCCcEEEEec------cccceEEcccccCCcceec-CCCcccccccccccCccCcEEEec-----cC---CceeeEeCc
Confidence 34677776521 1134566677666433332 2221 0111111222356777751 11 457899999
Q ss_pred CCCcEEecCCCC--CCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCc
Q 020688 205 ETRKWDSIPPLP--SPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG 273 (322)
Q Consensus 205 ~t~~W~~~~~~p--~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~ 273 (322)
.+.+|.+-+ +| .+|....-+--.+++++.--. .+ .+.+|||. +.+.+. .|+||..
T Consensus 262 s~~sW~eyp-LPgs~arpys~rVD~~grVW~sea~-----ag-----ai~rfdpe--ta~ftv-~p~pr~n 318 (353)
T COG4257 262 SVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSEAD-----AG-----AIGRFDPE--TARFTV-LPIPRPN 318 (353)
T ss_pred ccccceeee-CCCCCCCcceeeeccCCcEEeeccc-----cC-----ceeecCcc--cceEEE-ecCCCCC
Confidence 999998863 33 344333333345666664211 11 34566764 555543 4556655
No 139
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=30.42 E-value=4.2e+02 Score=24.10 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=36.6
Q ss_pred cceEEEECCEEEEEe-ecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecc
Q 020688 121 DGAAIQIKNLFYVFA-GYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187 (322)
Q Consensus 121 ~~~~~~~~~~lyv~G-G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 187 (322)
..++-.++++||+.- |.... ..-+.+.+-+.....|+.+.- |........-.+..++.||++|-.
T Consensus 193 EPCvkyY~g~LyLtTRgt~~~-~~GS~L~rs~d~G~~w~slrf-p~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 193 EPCVKYYDGVLYLTTRGTLPT-NPGSSLHRSDDNGQNWSSLRF-PNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EEEEEEETTEEEEEEEES-TT-S---EEEEESSTTSS-EEEE--TT---SS---EEEETTEEEEEEE-
T ss_pred cchhhhhCCEEEEEEcCcCCC-CCcceeeeecccCCchhhccc-cccccccCCCceeeCCEEEEEecc
Confidence 344556799999975 33222 234568888888888987431 121144555567789999999853
No 140
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=28.59 E-value=5.4e+02 Score=24.73 Aligned_cols=107 Identities=12% Similarity=0.144 Sum_probs=51.5
Q ss_pred EEEcCCCCCCcccceE-EEECCEEEEEeecCCCCCccceEEEEECCCC-----ceeeCCCCCCCCCceeeEEEE-eCCEE
Q 020688 109 WEQMPSAPVPRLDGAA-IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN-----KWVDRFDMPKDMAHSHLGVVS-DGRYI 181 (322)
Q Consensus 109 W~~~~~~p~~R~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~~~~~~~p~~r~~~~~~~-~~~~i 181 (322)
|+.+.... ++.-.++ ...++.+++.|... .+..-+-... +|..+.-... ...-.++.. -++.+
T Consensus 272 W~~~~~~~-~~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d~G~~~~~~~f~~~~~~~~--~~~l~~v~~~~d~~~ 341 (398)
T PLN00033 272 WQPHNRAS-ARRIQNMGWRADGGLWLLTRGG-------GLYVSKGTGLTEEDFDFEEADIKSR--GFGILDVGYRSKKEA 341 (398)
T ss_pred eEEecCCC-ccceeeeeEcCCCCEEEEeCCc-------eEEEecCCCCcccccceeecccCCC--CcceEEEEEcCCCcE
Confidence 77775433 3332233 33477888877421 1222222333 3444322111 112223333 36788
Q ss_pred EEEecccCCCCCCCCceEEEEECCCCcEEecCC---CCCCCCCCeEE-EECCEEEEEcc
Q 020688 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQ-LWRGRLHVMGG 236 (322)
Q Consensus 182 yv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~---~p~~r~~~~~~-~~~~~Lyi~GG 236 (322)
+++|.. ..+.+-...-++|++... .+.+.+ .+. .-+++.|+.|-
T Consensus 342 ~a~G~~---------G~v~~s~D~G~tW~~~~~~~~~~~~ly--~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 342 WAAGGS---------GILLRSTDGGKSWKRDKGADNIAANLY--SVKFFDDKKGFVLGN 389 (398)
T ss_pred EEEECC---------CcEEEeCCCCcceeEccccCCCCccee--EEEEcCCCceEEEeC
Confidence 888753 123344445668999752 232333 333 34578888874
No 141
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=27.57 E-value=4.7e+02 Score=23.73 Aligned_cols=99 Identities=21% Similarity=0.352 Sum_probs=54.8
Q ss_pred CCEEEEEe-ec-CCCC----CccceEEEEECCCCceeeCCCCCCCC--Cceee-EEEEeC-------CEEEEEecccCCC
Q 020688 128 KNLFYVFA-GY-GSLD----YVHSHVDVYNFTDNKWVDRFDMPKDM--AHSHL-GVVSDG-------RYIYIVSGQYGPQ 191 (322)
Q Consensus 128 ~~~lyv~G-G~-~~~~----~~~~~v~~yd~~t~~W~~~~~~~~p~--~r~~~-~~~~~~-------~~iyv~GG~~~~~ 191 (322)
.+.|||+= |. +... .+-..+..||+.+++-.+.-++|... +.+.. .+++.. +.+||.--.
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~---- 86 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG---- 86 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT----
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC----
Confidence 57899983 43 2222 33467999999999865533343211 23333 334433 467886311
Q ss_pred CCCCCceEEEEECCCCc-EEecCCCCCCCCCCeEEEECCEEEEE
Q 020688 192 CRGPTSRTFVLDSETRK-WDSIPPLPSPRYSPATQLWRGRLHVM 234 (322)
Q Consensus 192 ~~~~~~~~~~yD~~t~~-W~~~~~~p~~r~~~~~~~~~~~Lyi~ 234 (322)
...+.+||..+++ |+.+.....+........+++..+-.
T Consensus 87 ----~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~ 126 (287)
T PF03022_consen 87 ----GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQW 126 (287)
T ss_dssp ----TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEE
T ss_pred ----cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEec
Confidence 2469999999975 66665543344344555666665543
No 142
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=26.62 E-value=3.5e+02 Score=25.04 Aligned_cols=96 Identities=19% Similarity=0.125 Sum_probs=47.4
Q ss_pred EEeecCCC-CCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEEC--CCCcE
Q 020688 133 VFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS--ETRKW 209 (322)
Q Consensus 133 v~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~--~t~~W 209 (322)
++|++... .... .++.||.++.+++.+........=+..+....++.||+....... ...+..|+. .+.+.
T Consensus 3 ~vgsy~~~~~~gI-~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~-----~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 3 YVGSYTNGKGGGI-YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGD-----SGGVSSYRIDPDTGTL 76 (345)
T ss_dssp EEEECCSSSSTEE-EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSST-----TTEEEEEEEETTTTEE
T ss_pred EEEcCCCCCCCcE-EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccC-----CCCEEEEEECCCccee
Confidence 45666532 1111 245567799999876543220011122222257789998643311 344555554 44678
Q ss_pred EecCCCCCCCCCCeEEEE---CCEEEEE
Q 020688 210 DSIPPLPSPRYSPATQLW---RGRLHVM 234 (322)
Q Consensus 210 ~~~~~~p~~r~~~~~~~~---~~~Lyi~ 234 (322)
+.+...+.....++.+.+ +..||+.
T Consensus 77 ~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 77 TLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred EEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 777655432333333333 3455554
No 143
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.47 E-value=6.4e+02 Score=27.17 Aligned_cols=129 Identities=10% Similarity=0.022 Sum_probs=62.6
Q ss_pred EEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCC--EEEEEecccCCCCCCCCceEEEEECCCC
Q 020688 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR--YIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (322)
Q Consensus 130 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~yD~~t~ 207 (322)
-|+|-||-+.. . .+|+++ +|+.|+.= .+.. .--+.+++.+.. .+.+.-|. ...+-+||....
T Consensus 219 pliVSG~DDRq---V-KlWrmn-etKaWEvD-tcrg--H~nnVssvlfhp~q~lIlSnsE--------DksirVwDm~kR 282 (1202)
T KOG0292|consen 219 PLIVSGADDRQ---V-KLWRMN-ETKAWEVD-TCRG--HYNNVSSVLFHPHQDLILSNSE--------DKSIRVWDMTKR 282 (1202)
T ss_pred ceEEecCCcce---e-eEEEec-cccceeeh-hhhc--ccCCcceEEecCccceeEecCC--------CccEEEEecccc
Confidence 56666663322 2 388887 68889752 2221 122233444432 45554443 345677776554
Q ss_pred cEEecCCCCCCCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeEEecccccccccccccCCCCCcceEEEEeCCEEEEE
Q 020688 208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRFAGFPHVIYLS 287 (322)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~~yd~~~~~~~W~~~~p~pr~~~~~~~v~~~~iyi~ 287 (322)
+=-+.-.-...|+..-++--...||..|- ++.+..+-+ .|-. .+.|+.+|.++.+
T Consensus 283 t~v~tfrrendRFW~laahP~lNLfAAgH------DsGm~VFkl------------------eREr-pa~~v~~n~LfYv 337 (1202)
T KOG0292|consen 283 TSVQTFRRENDRFWILAAHPELNLFAAGH------DSGMIVFKL------------------ERER-PAYAVNGNGLFYV 337 (1202)
T ss_pred cceeeeeccCCeEEEEEecCCcceeeeec------CCceEEEEE------------------cccC-ceEEEcCCEEEEE
Confidence 32211111122332222222233444432 233333322 2555 4777788888888
Q ss_pred ccccCCCCceEE
Q 020688 288 LVSSVEDLNFYV 299 (322)
Q Consensus 288 GG~~~e~~~~~~ 299 (322)
-+..+..|||-.
T Consensus 338 kd~~i~~~d~~t 349 (1202)
T KOG0292|consen 338 KDRFIRSYDLRT 349 (1202)
T ss_pred ccceEEeeeccc
Confidence 777776676655
No 144
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=25.06 E-value=3.7e+02 Score=21.77 Aligned_cols=83 Identities=8% Similarity=0.169 Sum_probs=47.2
Q ss_pred EEECCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCC--ceeeEEEEe-CCEEEEEecccCCCCCCCCceEEE
Q 020688 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA--HSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFV 201 (322)
Q Consensus 125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~ 201 (322)
+.++|.+|=++-...... ...+..||..+.+..+..++|.... .....+.++ +++|.++--..... .-++|+
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~----~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETS----KIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCc----cEEEEE
Confidence 356788887776543332 1158889999999944334443111 223444333 67888773211111 246666
Q ss_pred EE---CCCCcEEec
Q 020688 202 LD---SETRKWDSI 212 (322)
Q Consensus 202 yD---~~t~~W~~~ 212 (322)
.+ -....|+++
T Consensus 77 m~~~~~~~~SWtK~ 90 (164)
T PF07734_consen 77 MKKYGYGKESWTKL 90 (164)
T ss_pred EeeeccCcceEEEE
Confidence 65 236789987
No 145
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=24.68 E-value=5e+02 Score=23.71 Aligned_cols=108 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred EeCCEEEEEecccCCCC-CCCCceEEEEECC-CCcEEecCCCCC-CCCCCeEEEECCEEEEEccCCCCCCCCCcceeEeE
Q 020688 176 SDGRYIYIVSGQYGPQC-RGPTSRTFVLDSE-TRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA 252 (322)
Q Consensus 176 ~~~~~iyv~GG~~~~~~-~~~~~~~~~yD~~-t~~W~~~~~~p~-~r~~~~~~~~~~~Lyi~GG~~~~~~~~~~~~~~i~ 252 (322)
.++|+.+|+|-...... . .+.+.-|.-. .++|+.++..|. ....+-.+.+++. +|+||.......+....|.-.
T Consensus 34 ~~~Gk~~IaGRVE~Rdswe--~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~ge-lifGGvev~~~~~~~l~wrt~ 110 (298)
T PF08950_consen 34 EYNGKTVIAGRVEKRDSWE--HSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGE-LIFGGVEVFPNDGGVLSWRTV 110 (298)
T ss_dssp EETTEEEEEEEEE-TT-SS----EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTE-EEEEEEEEE-------EEEEE
T ss_pred eECCEEEEEeeeecCCchh--ccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCE-EEEeeEEEeecCCCceEEEEE
Q ss_pred EecccccccccccccCCCCCcceEEEEe-CCEEEEE
Q 020688 253 VKDGKALEKAWRTEIPIPRGGPHRFAGF-PHVIYLS 287 (322)
Q Consensus 253 ~yd~~~~~~~W~~~~p~pr~~~~~~~v~-~~~iyi~ 287 (322)
-|..+...-+--...|..--. .+.+-+ +|+|-+|
T Consensus 111 FYrG~~~~L~~f~~GPd~MKD-iRlveL~DG~IGVf 145 (298)
T PF08950_consen 111 FYRGKIHDLKYFFTGPDGMKD-IRLVELADGRIGVF 145 (298)
T ss_dssp EEEEETTEEEEEEE--TT-----EEEE-TTS-EEEE
T ss_pred EEecChhheeeeecCCcccce-eEEEEecCCeEEEE
No 146
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=24.07 E-value=2.9e+02 Score=27.52 Aligned_cols=93 Identities=10% Similarity=0.134 Sum_probs=48.1
Q ss_pred CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEe--CCEEEEEecccCCCCCCCCceEEEEECC
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yD~~ 205 (322)
++...++||.++ .+++|.....+-.....+.. .|...+.+.+ +++.++.|-. ...+..||.+
T Consensus 454 ~~~~vaVGG~Dg------kvhvysl~g~~l~ee~~~~~--h~a~iT~vaySpd~~yla~~Da--------~rkvv~yd~~ 517 (603)
T KOG0318|consen 454 DGSEVAVGGQDG------KVHVYSLSGDELKEEAKLLE--HRAAITDVAYSPDGAYLAAGDA--------SRKVVLYDVA 517 (603)
T ss_pred CCCEEEEecccc------eEEEEEecCCcccceeeeec--ccCCceEEEECCCCcEEEEecc--------CCcEEEEEcc
Confidence 667778898654 27788776655433322222 3444444444 4555555432 4567777776
Q ss_pred CCcEEecC--CCCCCCCCCeEEEECCEEEEEccC
Q 020688 206 TRKWDSIP--PLPSPRYSPATQLWRGRLHVMGGS 237 (322)
Q Consensus 206 t~~W~~~~--~~p~~r~~~~~~~~~~~Lyi~GG~ 237 (322)
+++= ... .+..+|-..-+..-+++++.-|..
T Consensus 518 s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSl 550 (603)
T KOG0318|consen 518 SREV-KTNRWAFHTAKINCVAWSPNNKLVATGSL 550 (603)
T ss_pred cCce-ecceeeeeeeeEEEEEeCCCceEEEeccc
Confidence 6542 111 112233222222336777777764
No 147
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.68 E-value=3.2e+02 Score=24.56 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=38.8
Q ss_pred CceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCCcEEec--CCCCCCCCCCeEEEECCEEEEEccCCCCCCCCC
Q 020688 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI--PPLPSPRYSPATQLWRGRLHVMGGSKENRHTPG 245 (322)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~--~~~p~~r~~~~~~~~~~~Lyi~GG~~~~~~~~~ 245 (322)
+++..+.+..+++++|.-- +-+..+|+.- .++|.+.+..+--..++-|-|.|| ++.
T Consensus 222 ~~s~iAS~SqDg~viIwt~----------------~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G------dNk 279 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTK----------------DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG------DNK 279 (299)
T ss_pred CceeeEEecCCCcEEEEEe----------------cCccCcccccccccCCcceEEEEEeccccEEEEecC------CcE
Confidence 6777777777777777631 2233456543 455655554444445555666666 344
Q ss_pred cceeEeEEecccccccccccc
Q 020688 246 LEHWSIAVKDGKALEKAWRTE 266 (322)
Q Consensus 246 ~~~~~i~~yd~~~~~~~W~~~ 266 (322)
+..|.- + ...+|.++
T Consensus 280 vtlwke-----~-~~Gkw~~v 294 (299)
T KOG1332|consen 280 VTLWKE-----N-VDGKWEEV 294 (299)
T ss_pred EEEEEe-----C-CCCcEEEc
Confidence 445522 1 25578764
No 148
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=23.60 E-value=5.9e+02 Score=23.50 Aligned_cols=75 Identities=17% Similarity=0.368 Sum_probs=38.0
Q ss_pred CCEEEEEeecCCCCCccceEEEE--ECCCCceeeC---CCCCCCC-Cc-eeeEEEEe--CCEEEEEecccCCCCCCCCce
Q 020688 128 KNLFYVFAGYGSLDYVHSHVDVY--NFTDNKWVDR---FDMPKDM-AH-SHLGVVSD--GRYIYIVSGQYGPQCRGPTSR 198 (322)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~y--d~~t~~W~~~---~~~~~p~-~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 198 (322)
+..+||..-. .+.+.+| +..+.+++.+ +.++... .. ....+++. +..|||.-.. .+.
T Consensus 203 g~~~Yv~~e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--------~~s 268 (345)
T PF10282_consen 203 GKYAYVVNEL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--------SNS 268 (345)
T ss_dssp SSEEEEEETT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT--------TTE
T ss_pred cCEEEEecCC------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc--------CCE
Confidence 4579998642 2345554 4446666553 3333211 11 23333333 5678886422 355
Q ss_pred EEEEEC--CCCcEEecCCCC
Q 020688 199 TFVLDS--ETRKWDSIPPLP 216 (322)
Q Consensus 199 ~~~yD~--~t~~W~~~~~~p 216 (322)
+-+|+. .+.+-+.+...+
T Consensus 269 I~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEe
Confidence 666665 556666654333
No 149
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=23.39 E-value=7.1e+02 Score=24.40 Aligned_cols=76 Identities=18% Similarity=0.096 Sum_probs=47.5
Q ss_pred ceEEEECCEEEEE---eecCCCCCccceEEEEECCCCceeeCCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCce
Q 020688 122 GAAIQIKNLFYVF---AGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSR 198 (322)
Q Consensus 122 ~~~~~~~~~lyv~---GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 198 (322)
+....+++.+=|. |-+...+...++++++|-.-+.-..+..+.. .-.-.++-.+++.+|++.=+. +.-
T Consensus 380 f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGkltGl~~--gERIYAvRf~gdv~yiVTfrq-------tDP 450 (603)
T COG4880 380 FDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLTGLAP--GERIYAVRFVGDVLYIVTFRQ-------TDP 450 (603)
T ss_pred ccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEeccCC--CceEEEEEEeCceEEEEEEec-------cCc
Confidence 3334445544443 3344445567889999988887777766654 233445566799999986332 445
Q ss_pred EEEEECCC
Q 020688 199 TFVLDSET 206 (322)
Q Consensus 199 ~~~yD~~t 206 (322)
+++.|..+
T Consensus 451 lfviDlsN 458 (603)
T COG4880 451 LFVIDLSN 458 (603)
T ss_pred eEEEEcCC
Confidence 67777655
No 150
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=23.31 E-value=2.2e+02 Score=28.74 Aligned_cols=74 Identities=9% Similarity=0.167 Sum_probs=42.5
Q ss_pred CCcccceEEEE--CCEEEEEeecCCCCCccceEEEEECCCCceeeCCCCCCCC-CceeeEEEEeCCEEEEEecccCCCCC
Q 020688 117 VPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM-AHSHLGVVSDGRYIYIVSGQYGPQCR 193 (322)
Q Consensus 117 ~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~ 193 (322)
.|+.+.-++.. .-.||+.|- .++||++|.+...|-. |+.... +--...+.. ...|.++||.
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~-~hgLla~Gt~------ 195 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLN--PFETDSGELNVVSINE-EHGLLACGTE------ 195 (703)
T ss_pred cCcCCccccccCCCccEEEeec-------CcceEEEEcccccccc--ccccccccceeeeecC-ccceEEeccc------
Confidence 44444444432 346777663 3569999999998843 333310 122222222 2357888875
Q ss_pred CCCceEEEEECCCCc
Q 020688 194 GPTSRTFVLDSETRK 208 (322)
Q Consensus 194 ~~~~~~~~yD~~t~~ 208 (322)
...++.+||.+++
T Consensus 196 --~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 196 --DGVVEFWDPRDKS 208 (703)
T ss_pred --CceEEEecchhhh
Confidence 3568889988764
No 151
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.89 E-value=5.7e+02 Score=23.08 Aligned_cols=53 Identities=11% Similarity=0.306 Sum_probs=31.2
Q ss_pred ECCCCceee--CCCCCCCCCceeeEEEEeCCEEEEEecccCCCCCCCCceEEEEECCCC-cEEecCC
Q 020688 151 NFTDNKWVD--RFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR-KWDSIPP 214 (322)
Q Consensus 151 d~~t~~W~~--~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~-~W~~~~~ 214 (322)
+.+.++|+. +.+.|. +-.+.+-...++.|-|.|| .+.+..+-...+ +|.+++.
T Consensus 241 ~~e~e~wk~tll~~f~~--~~w~vSWS~sGn~LaVs~G---------dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPD--VVWRVSWSLSGNILAVSGG---------DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred cCccCcccccccccCCc--ceEEEEEeccccEEEEecC---------CcEEEEEEeCCCCcEEEccc
Confidence 445567765 334443 4444455555666666665 356777766654 8998854
No 152
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=21.84 E-value=5.3e+02 Score=22.51 Aligned_cols=125 Identities=9% Similarity=0.104 Sum_probs=59.9
Q ss_pred CCCCCCEEEcCCCC-CCcccceE-EEE-CCEEEEEeecCCCCCccceEEEEECC-CCceeeCCCCCCCCCceeeEEEEe-
Q 020688 103 PAPDLEWEQMPSAP-VPRLDGAA-IQI-KNLFYVFAGYGSLDYVHSHVDVYNFT-DNKWVDRFDMPKDMAHSHLGVVSD- 177 (322)
Q Consensus 103 ~~~~~~W~~~~~~p-~~R~~~~~-~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~~~p~~r~~~~~~~~- 177 (322)
+.....|+.....+ .......+ +.. ++.|+++--.. ... .-...+... -.+|+...+...|.+.....++..
T Consensus 141 ~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~ 217 (275)
T PF13088_consen 141 DDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLS 217 (275)
T ss_dssp SSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECT
T ss_pred CCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCCCcCCCceecccCcccCCceEEEcC
Confidence 33356798876653 22333333 333 56888775432 111 223334443 467987543222224555555553
Q ss_pred CCEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCC---CCC-CCeEEEE-CCEEEE
Q 020688 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS---PRY-SPATQLW-RGRLHV 233 (322)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~---~r~-~~~~~~~-~~~Lyi 233 (322)
++.++++........ .-.+..-.-...+|.....+.. ..+ ...++.. +|+|||
T Consensus 218 ~g~~~~~~~~~~~r~---~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 218 DGRLLLVYNNPDGRS---NLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp TSEEEEEEECSSTSE---EEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCCEEEEEECCCCCC---ceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 568888876211111 1122222333668987643322 122 2344444 568886
No 153
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.51 E-value=6.3e+02 Score=22.70 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=53.1
Q ss_pred ceEEEEECCCCceeeCCCCCCCCCceeeEEEEeC--CEEEEEecccCCCCCCCCceEEEEECCCCcEEecCCCCCCCCCC
Q 020688 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG--RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSP 222 (322)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~yD~~t~~W~~~~~~p~~r~~~ 222 (322)
..+.++|..|.+--+. ... .-..--++.+| ..+.+-|+. ..++.++|...+.-+.+.-+...+.+.
T Consensus 81 k~v~vwDV~TGkv~Rr--~rg--H~aqVNtV~fNeesSVv~Sgsf--------D~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR--FRG--HLAQVNTVRFNEESSVVASGSF--------DSSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred ceEEEEEcccCeeeee--ccc--ccceeeEEEecCcceEEEeccc--------cceeEEEEcccCCCCccchhhhhcCce
Confidence 3588899988764331 111 01111122333 345555654 356888999998888887777888888
Q ss_pred eEEEECCEEEEEccCCC
Q 020688 223 ATQLWRGRLHVMGGSKE 239 (322)
Q Consensus 223 ~~~~~~~~Lyi~GG~~~ 239 (322)
..+.+.+...|.|-.++
T Consensus 149 ~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 149 SSIDVAEHEIVAGSVDG 165 (307)
T ss_pred eEEEecccEEEeeccCC
Confidence 88888888877776543
Done!