Query 020689
Match_columns 322
No_of_seqs 356 out of 2174
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:22:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03041 GST_N_2GST_N GST_N fam 99.8 9.2E-19 2E-23 134.7 7.3 77 239-315 1-77 (77)
2 cd03041 GST_N_2GST_N GST_N fam 99.7 8.4E-17 1.8E-21 123.7 7.8 62 134-195 1-77 (77)
3 PRK09481 sspA stringent starva 99.7 2.1E-16 4.5E-21 142.5 10.7 86 133-220 9-108 (211)
4 PRK15113 glutathione S-transfe 99.7 6.5E-16 1.4E-20 139.6 11.3 86 133-220 4-111 (214)
5 cd03048 GST_N_Ure2p_like GST_N 99.6 5.1E-16 1.1E-20 119.7 7.6 78 239-317 1-81 (81)
6 PF13417 GST_N_3: Glutathione 99.6 1.6E-15 3.4E-20 115.9 7.8 60 137-198 1-74 (75)
7 PF13417 GST_N_3: Glutathione 99.6 2.4E-15 5.3E-20 114.9 7.0 74 242-318 1-74 (75)
8 cd03045 GST_N_Delta_Epsilon GS 99.6 2.5E-15 5.4E-20 113.3 6.7 72 240-313 1-74 (74)
9 cd03059 GST_N_SspA GST_N famil 99.6 3.9E-15 8.6E-20 111.7 7.4 73 240-315 1-73 (73)
10 PLN02473 glutathione S-transfe 99.6 7.5E-15 1.6E-19 131.7 10.2 87 134-222 2-107 (214)
11 PRK10387 glutaredoxin 2; Provi 99.6 5.5E-15 1.2E-19 131.9 9.1 84 135-222 1-97 (210)
12 cd03052 GST_N_GDAP1 GST_N fami 99.6 4.4E-15 9.4E-20 113.6 6.7 71 240-312 1-73 (73)
13 COG0625 Gst Glutathione S-tran 99.6 9.5E-15 2.1E-19 131.2 9.7 86 135-221 1-105 (211)
14 PRK13972 GSH-dependent disulfi 99.6 1.3E-14 2.9E-19 130.7 10.6 86 134-222 1-108 (215)
15 cd03037 GST_N_GRX2 GST_N famil 99.6 5.4E-15 1.2E-19 111.2 6.6 58 135-193 1-71 (71)
16 KOG0868 Glutathione S-transfer 99.6 6.1E-15 1.3E-19 131.0 7.5 85 134-220 5-107 (217)
17 KOG0406 Glutathione S-transfer 99.6 1.2E-14 2.6E-19 134.4 9.8 86 133-220 8-109 (231)
18 cd03040 GST_N_mPGES2 GST_N fam 99.6 1.3E-14 2.8E-19 110.6 8.2 62 135-196 2-77 (77)
19 PRK10357 putative glutathione 99.5 1.9E-14 4.2E-19 128.0 9.7 86 135-221 1-100 (202)
20 cd03058 GST_N_Tau GST_N family 99.5 1.3E-14 2.8E-19 110.0 7.2 73 240-315 1-74 (74)
21 PRK09481 sspA stringent starva 99.5 1.1E-14 2.3E-19 131.4 8.0 77 239-318 10-86 (211)
22 cd03080 GST_N_Metaxin_like GST 99.5 2.2E-14 4.8E-19 109.6 8.1 61 134-196 1-75 (75)
23 cd03048 GST_N_Ure2p_like GST_N 99.5 2.5E-14 5.4E-19 110.2 8.3 63 134-197 1-81 (81)
24 cd03059 GST_N_SspA GST_N famil 99.5 2.2E-14 4.9E-19 107.6 7.7 59 135-195 1-73 (73)
25 PRK11752 putative S-transferas 99.5 4.1E-14 8.9E-19 132.8 10.7 88 130-220 40-152 (264)
26 cd03050 GST_N_Theta GST_N fami 99.5 2.5E-14 5.4E-19 109.0 7.4 74 240-315 1-76 (76)
27 cd03051 GST_N_GTT2_like GST_N 99.5 1.9E-14 4.1E-19 107.5 6.6 72 240-312 1-74 (74)
28 cd03058 GST_N_Tau GST_N family 99.5 3.1E-14 6.7E-19 107.9 7.8 59 135-195 1-74 (74)
29 cd03045 GST_N_Delta_Epsilon GS 99.5 2.6E-14 5.5E-19 107.7 7.2 57 135-193 1-74 (74)
30 cd03060 GST_N_Omega_like GST_N 99.5 2.7E-14 5.8E-19 107.7 7.1 69 241-311 2-70 (71)
31 cd03037 GST_N_GRX2 GST_N famil 99.5 2.7E-14 5.9E-19 107.4 6.6 71 240-313 1-71 (71)
32 cd03056 GST_N_4 GST_N family, 99.5 3E-14 6.6E-19 106.5 6.6 71 240-312 1-73 (73)
33 PRK15113 glutathione S-transfe 99.5 2.9E-14 6.3E-19 128.8 7.6 79 238-318 4-86 (214)
34 cd03052 GST_N_GDAP1 GST_N fami 99.5 3.4E-14 7.4E-19 108.7 6.8 56 135-192 1-73 (73)
35 cd03040 GST_N_mPGES2 GST_N fam 99.5 3E-14 6.5E-19 108.6 6.1 75 239-316 1-77 (77)
36 cd03057 GST_N_Beta GST_N famil 99.5 5.9E-14 1.3E-18 107.0 7.5 75 240-316 1-77 (77)
37 cd03053 GST_N_Phi GST_N family 99.5 4.6E-14 1E-18 107.0 6.8 73 240-314 2-76 (76)
38 cd03047 GST_N_2 GST_N family, 99.5 4.1E-14 8.9E-19 107.1 6.5 71 240-312 1-73 (73)
39 COG0625 Gst Glutathione S-tran 99.5 5.8E-14 1.3E-18 126.1 8.1 78 240-318 1-79 (211)
40 cd03051 GST_N_GTT2_like GST_N 99.5 6.1E-14 1.3E-18 104.7 6.9 57 135-192 1-74 (74)
41 cd03050 GST_N_Theta GST_N fami 99.5 9.4E-14 2E-18 105.8 7.7 59 135-195 1-76 (76)
42 TIGR02182 GRXB Glutaredoxin, G 99.5 9.5E-14 2.1E-18 125.6 8.9 83 136-222 1-96 (209)
43 cd03060 GST_N_Omega_like GST_N 99.5 1E-13 2.3E-18 104.5 7.4 55 136-191 2-70 (71)
44 cd03061 GST_N_CLIC GST_N famil 99.5 1.3E-13 2.7E-18 110.9 8.1 71 246-319 20-90 (91)
45 cd03044 GST_N_EF1Bgamma GST_N 99.5 1.3E-13 2.7E-18 105.2 7.3 72 241-313 2-74 (75)
46 cd03055 GST_N_Omega GST_N fami 99.5 1.4E-13 3E-18 108.8 7.6 75 236-312 15-89 (89)
47 PLN02395 glutathione S-transfe 99.5 3.1E-13 6.7E-18 121.2 10.6 85 134-221 2-105 (215)
48 PRK13972 GSH-dependent disulfi 99.5 9.7E-14 2.1E-18 125.1 7.4 78 239-317 1-85 (215)
49 PRK10542 glutathionine S-trans 99.5 2E-13 4.3E-18 121.0 9.2 85 135-221 1-104 (201)
50 PLN02473 glutathione S-transfe 99.5 1.2E-13 2.5E-18 124.0 7.7 77 239-317 2-80 (214)
51 TIGR01262 maiA maleylacetoacet 99.5 2E-13 4.3E-18 121.8 9.1 83 136-220 1-101 (210)
52 cd03053 GST_N_Phi GST_N family 99.5 2E-13 4.3E-18 103.5 7.6 58 135-194 2-76 (76)
53 cd03076 GST_N_Pi GST_N family, 99.5 1.9E-13 4.1E-18 104.0 7.4 59 134-194 1-73 (73)
54 PF13409 GST_N_2: Glutathione 99.5 1.4E-13 3E-18 104.2 6.4 67 247-314 1-70 (70)
55 cd03039 GST_N_Sigma_like GST_N 99.4 6.4E-14 1.4E-18 105.6 4.3 72 240-313 1-72 (72)
56 cd03046 GST_N_GTT1_like GST_N 99.4 1.9E-13 4.2E-18 103.2 6.9 74 240-316 1-76 (76)
57 cd03049 GST_N_3 GST_N family, 99.4 1.9E-13 4.2E-18 103.1 6.7 71 240-312 1-73 (73)
58 cd03055 GST_N_Omega GST_N fami 99.4 2.9E-13 6.3E-18 107.0 8.0 62 130-192 14-89 (89)
59 PRK10387 glutaredoxin 2; Provi 99.4 1.7E-13 3.6E-18 122.3 7.3 76 240-318 1-76 (210)
60 cd03056 GST_N_4 GST_N family, 99.4 2.8E-13 6.1E-18 101.2 6.9 56 135-192 1-73 (73)
61 cd03076 GST_N_Pi GST_N family, 99.4 1.1E-13 2.4E-18 105.3 4.7 72 240-314 2-73 (73)
62 cd03061 GST_N_CLIC GST_N famil 99.4 3.1E-13 6.6E-18 108.7 7.4 56 141-198 20-89 (91)
63 cd03039 GST_N_Sigma_like GST_N 99.4 3.1E-13 6.8E-18 101.8 7.0 57 135-193 1-72 (72)
64 cd03057 GST_N_Beta GST_N famil 99.4 4.7E-13 1E-17 102.0 7.8 60 135-196 1-77 (77)
65 cd03077 GST_N_Alpha GST_N fami 99.4 7E-13 1.5E-17 102.7 8.1 60 135-196 2-77 (79)
66 cd03047 GST_N_2 GST_N family, 99.4 4.7E-13 1E-17 101.3 6.9 56 135-192 1-73 (73)
67 cd03049 GST_N_3 GST_N family, 99.4 4.4E-13 9.5E-18 101.1 6.6 57 135-192 1-73 (73)
68 PF13409 GST_N_2: Glutathione 99.4 5.2E-13 1.1E-17 101.1 6.8 52 142-194 1-70 (70)
69 cd03042 GST_N_Zeta GST_N famil 99.4 5.2E-13 1.1E-17 99.9 6.5 71 240-312 1-73 (73)
70 cd03080 GST_N_Metaxin_like GST 99.4 5E-13 1.1E-17 102.0 6.2 68 239-316 1-75 (75)
71 cd03038 GST_N_etherase_LigE GS 99.4 7.7E-13 1.7E-17 102.9 7.3 55 141-196 14-84 (84)
72 COG2999 GrxB Glutaredoxin 2 [P 99.4 3.3E-13 7.1E-18 119.9 5.2 93 135-231 1-108 (215)
73 cd03046 GST_N_GTT1_like GST_N 99.4 1.3E-12 2.7E-17 98.7 7.7 59 135-196 1-76 (76)
74 cd03038 GST_N_etherase_LigE GS 99.4 6.9E-13 1.5E-17 103.1 5.9 69 246-316 14-84 (84)
75 KOG0868 Glutathione S-transfer 99.4 5.3E-13 1.2E-17 118.7 5.9 79 239-319 5-86 (217)
76 cd03044 GST_N_EF1Bgamma GST_N 99.4 1.3E-12 2.7E-17 99.7 7.1 57 136-193 2-74 (75)
77 PRK11752 putative S-transferas 99.4 8.8E-13 1.9E-17 123.8 7.6 81 236-317 41-131 (264)
78 cd03042 GST_N_Zeta GST_N famil 99.4 1.2E-12 2.5E-17 98.0 6.7 56 135-192 1-73 (73)
79 KOG0867 Glutathione S-transfer 99.4 3.2E-12 6.9E-17 117.8 10.1 88 134-223 2-108 (226)
80 PLN02378 glutathione S-transfe 99.4 2.3E-12 5E-17 116.8 8.8 74 139-216 16-103 (213)
81 cd03054 GST_N_Metaxin GST_N fa 99.3 2.6E-12 5.7E-17 96.9 7.3 58 135-194 1-72 (72)
82 PLN02378 glutathione S-transfe 99.3 2.2E-12 4.8E-17 116.8 8.0 71 245-318 17-87 (213)
83 TIGR02182 GRXB Glutaredoxin, G 99.3 2.2E-12 4.8E-17 116.6 8.0 74 241-317 1-74 (209)
84 cd00570 GST_N_family Glutathio 99.3 2.3E-12 5.1E-17 93.0 6.4 71 240-312 1-71 (71)
85 PLN02395 glutathione S-transfe 99.3 2.8E-12 6E-17 115.0 7.9 76 239-317 2-79 (215)
86 cd03075 GST_N_Mu GST_N family, 99.3 3.2E-12 7E-17 99.8 7.2 58 136-195 2-82 (82)
87 PF02798 GST_N: Glutathione S- 99.3 3E-12 6.5E-17 98.4 6.6 71 240-313 3-76 (76)
88 PRK10542 glutathionine S-trans 99.3 2.6E-12 5.5E-17 113.9 7.1 77 240-318 1-80 (201)
89 KOG0406 Glutathione S-transfer 99.3 3.4E-12 7.5E-17 118.2 7.9 78 238-318 8-86 (231)
90 cd03077 GST_N_Alpha GST_N fami 99.3 5E-12 1.1E-16 97.9 7.0 72 240-317 2-78 (79)
91 PRK10357 putative glutathione 99.3 4.5E-12 9.7E-17 112.8 7.4 76 240-317 1-76 (202)
92 TIGR01262 maiA maleylacetoacet 99.3 4.6E-12 1E-16 113.0 7.4 75 241-317 1-78 (210)
93 cd00570 GST_N_family Glutathio 99.3 7.4E-12 1.6E-16 90.3 6.8 56 135-192 1-71 (71)
94 TIGR00862 O-ClC intracellular 99.3 8.3E-12 1.8E-16 116.3 8.6 70 245-317 16-85 (236)
95 cd03075 GST_N_Mu GST_N family, 99.3 5.5E-12 1.2E-16 98.5 6.1 73 241-315 2-82 (82)
96 TIGR00862 O-ClC intracellular 99.3 1.8E-11 4E-16 113.9 9.8 57 140-198 16-86 (236)
97 KOG0867 Glutathione S-transfer 99.3 8.3E-12 1.8E-16 115.0 6.9 76 239-316 2-79 (226)
98 PLN02817 glutathione dehydroge 99.3 1.6E-11 3.4E-16 116.0 8.6 74 140-217 70-157 (265)
99 cd03043 GST_N_1 GST_N family, 99.2 2.5E-11 5.4E-16 92.5 7.1 66 245-312 7-73 (73)
100 cd03054 GST_N_Metaxin GST_N fa 99.2 2.3E-11 5E-16 91.7 6.1 58 247-314 15-72 (72)
101 PLN02817 glutathione dehydroge 99.2 3.6E-11 7.8E-16 113.6 8.3 71 245-318 70-140 (265)
102 PTZ00057 glutathione s-transfe 99.2 1.1E-10 2.4E-15 104.9 9.8 62 134-197 4-85 (205)
103 PF02798 GST_N: Glutathione S- 99.1 2.1E-10 4.5E-15 88.2 8.3 56 135-193 3-76 (76)
104 PTZ00057 glutathione s-transfe 99.1 9E-11 2E-15 105.5 6.8 74 239-317 4-85 (205)
105 cd03043 GST_N_1 GST_N family, 99.1 2.6E-10 5.6E-15 86.9 6.8 52 139-192 6-73 (73)
106 cd03079 GST_N_Metaxin2 GST_N f 99.0 3.8E-10 8.2E-15 87.5 6.3 56 135-194 11-74 (74)
107 TIGR02190 GlrX-dom Glutaredoxi 98.9 2.4E-09 5.1E-14 82.9 7.1 74 236-312 6-79 (79)
108 TIGR02190 GlrX-dom Glutaredoxi 98.9 4.1E-09 9E-14 81.5 7.6 59 132-192 7-79 (79)
109 cd03029 GRX_hybridPRX5 Glutare 98.9 6.8E-09 1.5E-13 78.4 6.6 71 239-312 2-72 (72)
110 PRK10638 glutaredoxin 3; Provi 98.8 7.5E-09 1.6E-13 80.6 6.2 71 239-311 3-73 (83)
111 cd03079 GST_N_Metaxin2 GST_N f 98.8 8E-09 1.7E-13 80.1 5.6 60 246-314 15-74 (74)
112 cd03029 GRX_hybridPRX5 Glutare 98.8 2.1E-08 4.5E-13 75.7 7.2 57 134-192 2-72 (72)
113 PLN02907 glutamate-tRNA ligase 98.8 2.5E-08 5.4E-13 106.1 10.3 83 135-219 3-87 (722)
114 COG2999 GrxB Glutaredoxin 2 [P 98.7 1.1E-08 2.3E-13 91.5 5.2 75 240-317 1-75 (215)
115 PRK10329 glutaredoxin-like pro 98.7 2.1E-08 4.5E-13 78.6 6.1 76 239-315 2-77 (81)
116 KOG3029 Glutathione S-transfer 98.7 2.1E-08 4.5E-13 95.1 7.1 56 134-191 90-157 (370)
117 TIGR02196 GlrX_YruB Glutaredox 98.7 1.9E-08 4E-13 74.1 5.1 73 239-311 1-73 (74)
118 KOG4420 Uncharacterized conser 98.7 1.4E-08 2.9E-13 95.4 3.5 79 239-319 26-106 (325)
119 cd02976 NrdH NrdH-redoxin (Nrd 98.6 3.8E-08 8.3E-13 72.4 4.9 70 240-309 2-71 (73)
120 cd03027 GRX_DEP Glutaredoxin ( 98.6 2.4E-08 5.1E-13 75.7 3.8 58 239-296 2-59 (73)
121 PRK10638 glutaredoxin 3; Provi 98.6 2E-07 4.3E-12 72.5 7.6 58 134-193 3-75 (83)
122 cd02066 GRX_family Glutaredoxi 98.6 1.1E-07 2.3E-12 69.5 5.7 69 240-310 2-70 (72)
123 cd03078 GST_N_Metaxin1_like GS 98.6 2.1E-07 4.7E-12 71.5 7.3 51 142-194 15-72 (73)
124 TIGR02194 GlrX_NrdH Glutaredox 98.6 1.1E-07 2.5E-12 72.0 5.4 69 240-309 1-70 (72)
125 KOG4420 Uncharacterized conser 98.6 6.4E-08 1.4E-12 90.9 4.8 69 128-198 20-105 (325)
126 PRK11200 grxA glutaredoxin 1; 98.5 2.4E-07 5.2E-12 72.3 6.7 76 239-316 2-84 (85)
127 TIGR02200 GlrX_actino Glutared 98.5 2.2E-07 4.8E-12 69.7 6.0 73 240-313 2-77 (77)
128 cd03418 GRX_GRXb_1_3_like Glut 98.5 2.1E-07 4.6E-12 70.0 5.8 71 240-312 2-73 (75)
129 TIGR02196 GlrX_YruB Glutaredox 98.5 6.2E-07 1.3E-11 65.9 7.3 56 134-191 1-73 (74)
130 TIGR02183 GRXA Glutaredoxin, G 98.5 4.2E-07 9.1E-12 71.6 6.7 77 240-318 2-85 (86)
131 KOG1695 Glutathione S-transfer 98.4 1.2E-06 2.6E-11 80.3 9.5 79 134-221 3-95 (206)
132 TIGR02181 GRX_bact Glutaredoxi 98.4 5E-07 1.1E-11 69.1 5.7 71 240-312 1-71 (79)
133 COG0695 GrxC Glutaredoxin and 98.4 5.1E-07 1.1E-11 70.6 5.5 58 239-296 2-61 (80)
134 KOG3029 Glutathione S-transfer 98.4 5.5E-07 1.2E-11 85.6 6.1 69 239-312 90-158 (370)
135 cd02066 GRX_family Glutaredoxi 98.4 2E-06 4.3E-11 62.7 7.4 55 134-190 1-70 (72)
136 TIGR02183 GRXA Glutaredoxin, G 98.3 2.6E-06 5.7E-11 67.0 7.9 60 135-196 2-83 (86)
137 cd03418 GRX_GRXb_1_3_like Glut 98.3 2.5E-06 5.5E-11 64.1 7.5 56 135-192 2-73 (75)
138 cd03027 GRX_DEP Glutaredoxin ( 98.3 2.7E-06 5.8E-11 64.4 7.3 53 134-188 2-69 (73)
139 PRK11200 grxA glutaredoxin 1; 98.3 4.4E-06 9.5E-11 65.1 8.2 61 134-196 2-84 (85)
140 PF00462 Glutaredoxin: Glutare 98.2 7.5E-07 1.6E-11 64.9 3.0 56 240-295 1-56 (60)
141 PRK10329 glutaredoxin-like pro 98.2 3.7E-06 8.1E-11 65.8 6.5 42 134-175 2-57 (81)
142 TIGR02200 GlrX_actino Glutared 98.2 5E-06 1.1E-10 62.2 6.5 57 135-192 2-76 (77)
143 PHA03050 glutaredoxin; Provisi 98.2 3.2E-06 6.9E-11 69.9 5.6 72 236-309 11-88 (108)
144 cd03419 GRX_GRXh_1_2_like Glut 98.2 6.5E-06 1.4E-10 62.7 6.9 72 240-313 2-76 (82)
145 KOG1695 Glutathione S-transfer 98.2 3.1E-06 6.6E-11 77.7 5.9 76 239-317 3-78 (206)
146 TIGR00365 monothiol glutaredox 98.2 4E-06 8.6E-11 67.8 5.9 72 236-309 10-86 (97)
147 cd02976 NrdH NrdH-redoxin (Nrd 98.1 7.2E-06 1.6E-10 60.1 6.4 47 134-182 1-62 (73)
148 cd03419 GRX_GRXh_1_2_like Glut 98.1 1.4E-05 3E-10 60.9 8.0 58 134-193 1-76 (82)
149 cd03078 GST_N_Metaxin1_like GS 98.1 8.4E-06 1.8E-10 62.6 6.7 58 247-314 15-72 (73)
150 TIGR02181 GRX_bact Glutaredoxi 98.1 1.1E-05 2.4E-10 61.6 7.4 57 135-193 1-72 (79)
151 cd03028 GRX_PICOT_like Glutare 98.1 6.1E-06 1.3E-10 65.5 5.9 74 236-311 6-84 (90)
152 TIGR02189 GlrX-like_plant Glut 98.1 8.8E-06 1.9E-10 66.0 6.9 60 236-295 6-68 (99)
153 COG0695 GrxC Glutaredoxin and 98.1 1.5E-05 3.3E-10 62.2 7.6 58 134-193 2-76 (80)
154 TIGR02194 GlrX_NrdH Glutaredox 98.1 7.6E-06 1.6E-10 61.9 5.6 40 135-174 1-54 (72)
155 PTZ00062 glutaredoxin; Provisi 98.0 7.9E-05 1.7E-09 68.3 12.8 149 135-309 21-187 (204)
156 KOG1422 Intracellular Cl- chan 98.0 1.7E-05 3.7E-10 72.7 7.9 74 245-321 18-91 (221)
157 KOG1422 Intracellular Cl- chan 98.0 2.7E-05 5.9E-10 71.4 8.2 60 141-202 19-92 (221)
158 TIGR02189 GlrX-like_plant Glut 98.0 3.7E-05 8E-10 62.3 7.9 57 133-191 8-82 (99)
159 PF00462 Glutaredoxin: Glutare 97.9 2.7E-05 5.8E-10 56.7 6.1 44 135-180 1-59 (60)
160 KOG4244 Failed axon connection 97.9 3.4E-05 7.4E-10 72.9 8.3 65 133-199 44-122 (281)
161 PHA03050 glutaredoxin; Provisi 97.9 3.8E-05 8.2E-10 63.5 7.6 55 133-189 13-88 (108)
162 TIGR02180 GRX_euk Glutaredoxin 97.9 5.6E-05 1.2E-09 57.5 7.0 72 240-313 1-77 (84)
163 TIGR02180 GRX_euk Glutaredoxin 97.9 7.4E-05 1.6E-09 56.9 7.5 57 135-193 1-77 (84)
164 TIGR00365 monothiol glutaredox 97.8 7.9E-05 1.7E-09 60.2 8.0 58 133-192 12-89 (97)
165 cd03028 GRX_PICOT_like Glutare 97.8 0.00014 3.1E-09 57.6 8.0 58 133-192 8-85 (90)
166 PLN02907 glutamate-tRNA ligase 97.6 0.00011 2.3E-09 78.7 6.0 64 240-318 3-66 (722)
167 PRK10824 glutaredoxin-4; Provi 97.4 0.00025 5.5E-09 59.5 5.6 71 237-309 14-89 (115)
168 PRK01655 spxA transcriptional 97.3 0.00058 1.3E-08 58.2 6.4 36 239-274 1-36 (131)
169 PRK12759 bifunctional gluaredo 97.3 0.00029 6.3E-09 70.7 5.1 65 238-303 2-75 (410)
170 cd03031 GRX_GRX_like Glutaredo 97.2 0.0007 1.5E-08 59.1 5.8 56 240-295 2-67 (147)
171 cd03036 ArsC_like Arsenate Red 97.2 0.00037 7.9E-09 57.5 3.6 47 240-286 1-47 (111)
172 PRK12559 transcriptional regul 97.0 0.0019 4.1E-08 55.1 6.7 35 239-273 1-35 (131)
173 PRK10824 glutaredoxin-4; Provi 96.9 0.0043 9.4E-08 52.0 8.0 58 133-192 15-92 (115)
174 cd02977 ArsC_family Arsenate R 96.9 0.0015 3.2E-08 53.0 4.5 47 240-286 1-47 (105)
175 cd03032 ArsC_Spx Arsenate Redu 96.8 0.0014 3E-08 54.3 4.2 36 239-274 1-36 (115)
176 PRK13344 spxA transcriptional 96.8 0.0033 7.1E-08 53.7 6.6 36 239-274 1-36 (132)
177 KOG4244 Failed axon connection 96.7 0.0022 4.8E-08 60.9 4.8 63 247-319 60-122 (281)
178 cd03036 ArsC_like Arsenate Red 96.6 0.0023 4.9E-08 52.8 4.0 30 135-164 1-30 (111)
179 PRK01655 spxA transcriptional 96.6 0.0026 5.6E-08 54.2 4.5 31 134-164 1-31 (131)
180 cd03032 ArsC_Spx Arsenate Redu 96.6 0.0029 6.3E-08 52.4 4.6 31 134-164 1-31 (115)
181 PF10568 Tom37: Outer mitochon 96.6 0.0069 1.5E-07 46.6 6.2 49 142-191 13-71 (72)
182 cd02973 TRX_GRX_like Thioredox 96.5 0.0059 1.3E-07 44.8 5.3 47 134-182 2-64 (67)
183 cd02977 ArsC_family Arsenate R 96.4 0.0039 8.5E-08 50.4 4.3 30 135-164 1-30 (105)
184 TIGR01617 arsC_related transcr 96.4 0.0037 7.9E-08 51.9 3.9 43 240-282 1-43 (117)
185 KOG1752 Glutaredoxin and relat 96.4 0.014 3E-07 48.2 7.0 72 236-309 12-86 (104)
186 PRK12759 bifunctional gluaredo 96.1 0.014 3.1E-07 58.7 7.2 55 133-189 2-79 (410)
187 PRK12559 transcriptional regul 96.1 0.0095 2.1E-07 50.8 4.8 31 134-164 1-31 (131)
188 PTZ00062 glutaredoxin; Provisi 96.0 0.027 5.8E-07 51.8 8.0 56 133-190 113-188 (204)
189 cd03031 GRX_GRX_like Glutaredo 96.0 0.028 6.1E-07 49.1 7.7 54 135-190 2-80 (147)
190 TIGR01617 arsC_related transcr 96.0 0.0093 2E-07 49.4 4.2 30 135-164 1-30 (117)
191 KOG1752 Glutaredoxin and relat 95.9 0.039 8.5E-07 45.6 7.7 59 132-192 13-89 (104)
192 PRK10026 arsenate reductase; P 95.9 0.026 5.6E-07 49.0 6.9 75 238-312 2-117 (141)
193 PRK13344 spxA transcriptional 95.8 0.013 2.7E-07 50.2 4.5 31 134-164 1-31 (132)
194 cd02973 TRX_GRX_like Thioredox 95.8 0.014 3E-07 42.7 4.1 53 239-295 2-59 (67)
195 PF10568 Tom37: Outer mitochon 95.8 0.038 8.2E-07 42.5 6.5 57 247-312 13-72 (72)
196 cd03035 ArsC_Yffb Arsenate Red 95.8 0.014 3.1E-07 47.8 4.5 43 240-282 1-43 (105)
197 TIGR02187 GlrX_arch Glutaredox 95.5 0.21 4.5E-06 45.5 11.6 71 239-313 136-214 (215)
198 TIGR00412 redox_disulf_2 small 95.4 0.047 1E-06 41.7 5.9 44 135-181 3-60 (76)
199 cd03033 ArsC_15kD Arsenate Red 95.4 0.021 4.5E-07 47.6 4.1 39 240-278 2-40 (113)
200 PRK10026 arsenate reductase; P 95.3 0.09 2E-06 45.7 7.9 34 133-166 2-35 (141)
201 cd03035 ArsC_Yffb Arsenate Red 95.3 0.025 5.5E-07 46.3 4.3 30 135-164 1-30 (105)
202 COG1393 ArsC Arsenate reductas 95.0 0.034 7.4E-07 46.7 4.4 37 238-274 1-37 (117)
203 cd03033 ArsC_15kD Arsenate Red 94.9 0.037 8.1E-07 46.0 4.3 30 135-164 2-31 (113)
204 cd03030 GRX_SH3BGR Glutaredoxi 94.7 0.038 8.2E-07 44.5 3.8 58 250-309 18-79 (92)
205 PRK10853 putative reductase; P 94.7 0.042 9.1E-07 46.1 4.2 36 239-274 1-36 (118)
206 PRK10853 putative reductase; P 94.6 0.047 1E-06 45.8 4.1 31 134-164 1-31 (118)
207 TIGR01616 nitro_assoc nitrogen 94.5 0.057 1.2E-06 45.9 4.5 31 134-164 2-32 (126)
208 COG1393 ArsC Arsenate reductas 94.3 0.071 1.5E-06 44.8 4.6 32 133-164 1-32 (117)
209 TIGR01616 nitro_assoc nitrogen 94.0 0.076 1.6E-06 45.1 4.3 34 239-272 2-35 (126)
210 cd03034 ArsC_ArsC Arsenate Red 93.5 0.12 2.5E-06 42.7 4.5 35 240-274 1-35 (112)
211 TIGR00014 arsC arsenate reduct 93.1 0.14 3.1E-06 42.4 4.4 43 240-282 1-43 (114)
212 cd03034 ArsC_ArsC Arsenate Red 92.7 0.17 3.6E-06 41.8 4.2 30 135-164 1-30 (112)
213 COG4545 Glutaredoxin-related p 92.4 0.24 5.1E-06 38.9 4.4 61 240-300 4-76 (85)
214 TIGR00014 arsC arsenate reduct 92.4 0.19 4.1E-06 41.6 4.2 30 135-164 1-30 (114)
215 PF11287 DUF3088: Protein of u 92.0 0.39 8.4E-06 40.3 5.6 56 142-198 23-110 (112)
216 PF11287 DUF3088: Protein of u 92.0 0.7 1.5E-05 38.8 7.1 71 247-320 23-112 (112)
217 cd01659 TRX_superfamily Thiore 92.0 0.33 7.1E-06 32.3 4.4 56 241-297 2-62 (69)
218 PF05768 DUF836: Glutaredoxin- 91.4 0.76 1.6E-05 35.5 6.4 40 135-174 2-55 (81)
219 cd03026 AhpF_NTD_C TRX-GRX-lik 91.2 0.5 1.1E-05 37.4 5.3 47 134-182 15-77 (89)
220 PF05768 DUF836: Glutaredoxin- 90.9 0.67 1.5E-05 35.8 5.6 52 240-296 2-57 (81)
221 cd01659 TRX_superfamily Thiore 90.8 0.52 1.1E-05 31.2 4.4 40 135-174 1-59 (69)
222 PF09635 MetRS-N: MetRS-N bind 90.5 0.36 7.8E-06 41.0 4.0 51 147-198 13-65 (122)
223 TIGR00411 redox_disulf_1 small 90.3 0.88 1.9E-05 33.9 5.7 41 134-174 2-59 (82)
224 PHA02125 thioredoxin-like prot 90.1 0.54 1.2E-05 35.5 4.4 53 239-295 1-53 (75)
225 TIGR00411 redox_disulf_1 small 89.2 1.4 3.1E-05 32.8 6.1 71 239-313 2-80 (82)
226 COG4545 Glutaredoxin-related p 89.2 0.97 2.1E-05 35.6 5.1 31 136-166 5-35 (85)
227 TIGR00412 redox_disulf_2 small 89.0 0.97 2.1E-05 34.4 5.1 49 240-294 3-55 (76)
228 PF03960 ArsC: ArsC family; I 88.3 0.72 1.6E-05 37.6 4.2 40 243-282 1-40 (110)
229 PF13192 Thioredoxin_3: Thiore 88.0 2.2 4.8E-05 32.3 6.5 47 135-184 3-63 (76)
230 PHA02125 thioredoxin-like prot 87.2 1.2 2.7E-05 33.5 4.6 39 134-174 1-52 (75)
231 PF09635 MetRS-N: MetRS-N bind 86.8 0.4 8.6E-06 40.8 1.8 33 286-318 33-65 (122)
232 PRK15317 alkyl hydroperoxide r 85.1 3.7 8E-05 42.2 8.3 162 135-316 23-199 (517)
233 COG0278 Glutaredoxin-related p 85.1 1.9 4E-05 35.7 4.8 51 245-295 27-78 (105)
234 PF03960 ArsC: ArsC family; I 84.1 1.2 2.6E-05 36.2 3.4 27 138-164 1-27 (110)
235 KOG3028 Translocase of outer m 84.0 8 0.00017 37.9 9.4 52 142-194 16-74 (313)
236 COG0435 ECM4 Predicted glutath 83.7 5.1 0.00011 38.9 7.9 88 133-220 50-185 (324)
237 PF13192 Thioredoxin_3: Thiore 82.7 4.3 9.3E-05 30.7 5.8 50 240-295 3-56 (76)
238 KOG3027 Mitochondrial outer me 81.8 4.6 9.9E-05 37.7 6.5 56 134-194 28-91 (257)
239 cd03026 AhpF_NTD_C TRX-GRX-lik 81.1 2.1 4.6E-05 33.8 3.7 52 239-294 15-71 (89)
240 TIGR03140 AhpF alkyl hydropero 80.6 8.3 0.00018 39.7 8.8 73 239-314 120-198 (515)
241 COG0278 Glutaredoxin-related p 79.1 11 0.00024 31.3 7.2 58 133-193 15-93 (105)
242 PHA03075 glutaredoxin-like pro 77.1 4.9 0.00011 34.1 4.8 60 133-195 3-70 (123)
243 KOG2903 Predicted glutathione 73.5 11 0.00024 36.4 6.7 88 133-220 36-183 (319)
244 TIGR03143 AhpF_homolog putativ 72.4 24 0.00053 36.7 9.6 53 239-295 479-536 (555)
245 cd02947 TRX_family TRX family; 71.9 11 0.00024 27.3 5.3 41 133-173 12-68 (93)
246 PF00085 Thioredoxin: Thioredo 71.5 30 0.00064 26.2 7.8 60 134-193 20-102 (103)
247 cd02975 PfPDO_like_N Pyrococcu 71.4 5.8 0.00013 32.4 3.9 25 133-157 23-48 (113)
248 PF04908 SH3BGR: SH3-binding, 70.3 8.1 0.00018 31.6 4.5 46 250-295 19-73 (99)
249 COG0435 ECM4 Predicted glutath 68.8 7.8 0.00017 37.7 4.6 81 236-316 48-158 (324)
250 cd03030 GRX_SH3BGR Glutaredoxi 68.6 16 0.00035 29.2 5.8 53 135-189 2-79 (92)
251 TIGR03143 AhpF_homolog putativ 65.9 11 0.00023 39.4 5.4 41 134-174 479-535 (555)
252 PRK15317 alkyl hydroperoxide r 63.0 13 0.00027 38.4 5.2 63 132-196 117-199 (517)
253 TIGR02187 GlrX_arch Glutaredox 62.8 27 0.00058 31.6 6.8 47 133-179 135-197 (215)
254 KOG0911 Glutaredoxin-related p 61.4 14 0.0003 34.7 4.7 51 245-295 151-201 (227)
255 TIGR03140 AhpF alkyl hydropero 61.1 14 0.00031 38.0 5.2 60 133-194 119-198 (515)
256 TIGR01295 PedC_BrcD bacterioci 59.0 29 0.00062 28.8 5.8 24 133-156 25-48 (122)
257 KOG3027 Mitochondrial outer me 58.7 22 0.00047 33.3 5.4 57 249-314 35-91 (257)
258 cd02949 TRX_NTR TRX domain, no 57.8 26 0.00057 27.1 5.2 22 134-155 16-37 (97)
259 cd02947 TRX_family TRX family; 57.4 23 0.0005 25.6 4.6 51 240-294 14-69 (93)
260 cd02975 PfPDO_like_N Pyrococcu 55.8 15 0.00033 29.9 3.6 51 240-294 25-81 (113)
261 PRK11657 dsbG disulfide isomer 51.2 22 0.00048 33.4 4.3 25 131-155 117-141 (251)
262 PRK10877 protein disulfide iso 50.1 23 0.00051 32.8 4.3 34 131-164 107-141 (232)
263 PF13098 Thioredoxin_2: Thiore 50.0 16 0.00035 28.7 2.8 24 132-155 6-29 (112)
264 KOG0911 Glutaredoxin-related p 48.1 38 0.00081 31.9 5.2 57 133-192 139-215 (227)
265 cd02953 DsbDgamma DsbD gamma f 48.0 28 0.0006 27.2 3.9 55 239-293 14-77 (104)
266 TIGR01295 PedC_BrcD bacterioci 47.5 34 0.00075 28.4 4.5 56 239-294 26-96 (122)
267 cd03020 DsbA_DsbC_DsbG DsbA fa 47.4 35 0.00076 30.2 4.9 34 131-164 77-110 (197)
268 PF12062 HSNSD: heparan sulfat 45.6 42 0.00091 34.8 5.5 58 132-191 60-122 (487)
269 PTZ00051 thioredoxin; Provisio 45.5 56 0.0012 24.9 5.2 23 134-156 21-43 (98)
270 TIGR01068 thioredoxin thioredo 45.1 92 0.002 23.2 6.3 22 135-156 18-39 (101)
271 COG2761 FrnE Predicted dithiol 44.8 46 0.001 31.2 5.3 60 134-198 7-70 (225)
272 cd02984 TRX_PICOT TRX domain, 43.0 49 0.0011 25.1 4.5 33 134-166 17-53 (97)
273 PF04134 DUF393: Protein of un 42.8 88 0.0019 25.0 6.1 55 138-194 2-77 (114)
274 cd02972 DsbA_family DsbA famil 42.7 28 0.0006 25.7 3.0 22 135-156 1-22 (98)
275 cd02996 PDI_a_ERp44 PDIa famil 42.4 73 0.0016 25.0 5.5 22 134-155 21-42 (108)
276 cd03023 DsbA_Com1_like DsbA fa 42.3 39 0.00085 27.6 4.1 24 133-156 7-30 (154)
277 PF01323 DSBA: DSBA-like thior 42.0 43 0.00093 28.8 4.5 32 135-166 2-38 (193)
278 PRK13728 conjugal transfer pro 41.7 58 0.0013 29.4 5.3 40 135-174 73-120 (181)
279 cd02955 SSP411 TRX domain, SSP 40.9 62 0.0014 27.2 5.1 17 134-150 18-34 (124)
280 cd02949 TRX_NTR TRX domain, no 40.4 64 0.0014 24.9 4.8 52 238-293 15-72 (97)
281 KOG3028 Translocase of outer m 38.7 91 0.002 30.7 6.4 58 247-313 16-73 (313)
282 cd02959 ERp19 Endoplasmic reti 38.1 82 0.0018 25.8 5.4 22 134-155 22-43 (117)
283 PF13728 TraF: F plasmid trans 37.9 92 0.002 28.6 6.2 33 134-166 123-159 (215)
284 PRK09381 trxA thioredoxin; Pro 37.4 1.8E+02 0.004 22.6 7.2 22 134-155 24-45 (109)
285 COG3011 Predicted thiol-disulf 36.8 2E+02 0.0043 25.0 7.6 63 130-194 6-86 (137)
286 cd02963 TRX_DnaJ TRX domain, D 36.0 1.3E+02 0.0029 23.9 6.2 40 134-173 27-84 (111)
287 cd03024 DsbA_FrnE DsbA family, 35.7 46 0.001 29.0 3.7 31 135-165 1-39 (201)
288 KOG2903 Predicted glutathione 34.9 57 0.0012 31.7 4.3 77 237-313 35-149 (319)
289 cd02989 Phd_like_TxnDC9 Phosdu 34.1 1.1E+02 0.0023 24.9 5.4 49 134-182 25-89 (113)
290 PRK10996 thioredoxin 2; Provis 33.5 2.5E+02 0.0053 23.5 7.7 46 134-179 55-117 (139)
291 cd05564 PTS_IIB_chitobiose_lic 33.1 62 0.0013 25.8 3.7 65 248-312 13-95 (96)
292 COG3019 Predicted metal-bindin 31.9 1.3E+02 0.0028 26.5 5.7 34 133-166 26-59 (149)
293 cd03022 DsbA_HCCA_Iso DsbA fam 31.7 65 0.0014 27.7 4.0 32 135-166 1-36 (192)
294 cd03021 DsbA_GSTK DsbA family, 31.5 78 0.0017 28.3 4.5 33 134-166 2-38 (209)
295 cd02950 TxlA TRX-like protein 31.0 3.2E+02 0.007 23.0 8.3 23 134-156 23-45 (142)
296 PRK10877 protein disulfide iso 30.7 59 0.0013 30.2 3.7 25 237-261 108-132 (232)
297 PF00085 Thioredoxin: Thioredo 27.6 43 0.00092 25.3 1.9 72 239-314 20-103 (103)
298 cd02959 ERp19 Endoplasmic reti 27.5 1E+02 0.0022 25.2 4.2 52 240-293 23-81 (117)
299 cd02970 PRX_like2 Peroxiredoxi 26.7 1.2E+02 0.0027 24.5 4.7 22 134-155 25-48 (149)
300 cd05564 PTS_IIB_chitobiose_lic 26.1 1.6E+02 0.0034 23.4 4.9 23 144-166 14-36 (96)
301 COG3011 Predicted thiol-disulf 25.9 2.1E+02 0.0046 24.9 5.9 75 239-314 9-86 (137)
302 cd02994 PDI_a_TMX PDIa family, 25.9 1.9E+02 0.0042 22.0 5.4 23 134-156 19-41 (101)
303 cd03019 DsbA_DsbA DsbA family, 25.2 89 0.0019 26.4 3.6 24 133-156 17-40 (178)
304 cd04911 ACT_AKiii-YclM-BS_1 AC 25.2 72 0.0016 24.9 2.7 31 144-174 16-47 (76)
305 PF13462 Thioredoxin_4: Thiore 25.0 80 0.0017 26.2 3.2 23 132-154 13-35 (162)
306 PRK11657 dsbG disulfide isomer 24.6 62 0.0014 30.4 2.7 34 237-270 118-155 (251)
307 cd03020 DsbA_DsbC_DsbG DsbA fa 23.7 69 0.0015 28.4 2.7 35 237-271 78-114 (197)
308 KOG2824 Glutaredoxin-related p 23.7 1.1E+02 0.0025 29.6 4.2 57 250-308 149-209 (281)
309 PRK13703 conjugal pilus assemb 23.5 2.1E+02 0.0046 27.2 6.0 34 133-166 145-182 (248)
310 TIGR02739 TraF type-F conjugat 22.7 2.3E+02 0.0049 27.1 6.1 33 134-166 153-189 (256)
311 PHA02278 thioredoxin-like prot 22.6 1.8E+02 0.0039 23.4 4.8 55 240-294 18-78 (103)
312 cd03004 PDI_a_ERdj5_C PDIa fam 22.6 2E+02 0.0043 22.1 4.9 23 134-156 22-44 (104)
313 cd03003 PDI_a_ERdj5_N PDIa fam 22.6 1.9E+02 0.004 22.3 4.7 23 134-156 21-43 (101)
314 cd02950 TxlA TRX-like protein 21.6 4.2E+02 0.0091 22.3 7.0 78 241-321 25-116 (142)
315 TIGR01126 pdi_dom protein disu 21.5 1.2E+02 0.0027 22.7 3.4 71 239-313 16-100 (102)
316 KOG3425 Uncharacterized conser 21.5 1.6E+02 0.0035 25.3 4.3 37 141-177 43-84 (128)
317 cd02948 TRX_NDPK TRX domain, T 21.1 3.3E+02 0.0072 21.1 6.0 23 134-156 20-42 (102)
318 PF04134 DUF393: Protein of un 20.8 4E+02 0.0086 21.0 6.5 70 243-313 2-76 (114)
319 cd02961 PDI_a_family Protein D 20.7 3.1E+02 0.0068 19.9 5.5 24 133-156 17-40 (101)
320 TIGR01764 excise DNA binding d 20.3 60 0.0013 21.3 1.3 42 149-192 4-48 (49)
No 1
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=9.2e-19 Score=134.65 Aligned_cols=77 Identities=43% Similarity=0.785 Sum_probs=71.2
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhc
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 315 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y 315 (322)
|++||+++.||||++|+++|.++||+|+.+++..++++.++++++||.++||+|+|+++|+.++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 47899999999999999999999999999999877666789999999999999998666789999999999999986
No 2
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.68 E-value=8.4e-17 Score=123.71 Aligned_cols=62 Identities=60% Similarity=1.097 Sum_probs=57.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHHHhc
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLFQQY 195 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y 195 (322)
|++||+++.||||+|||++|+|+||+|+.+.++ ++||+|+|+++|..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 589999999999999999999999999999875 89999998656799999999999999986
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.68 E-value=2.1e-16 Score=142.51 Aligned_cols=86 Identities=22% Similarity=0.263 Sum_probs=77.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCC
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 198 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~ 198 (322)
.+|+||+++.||+|++||++|+|+||+||.+.++ |+||+|+| +|.+|+||.||++||+++|++.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCCC
Confidence 3799999999999999999999999999999997 99999998 6899999999999999999876
Q ss_pred CCCCCChhhHHHHHchhhhHhh
Q 020689 199 RSPSTGLLESTLITGWMPTIFR 220 (322)
Q Consensus 199 ~~p~~~~~~~a~v~~Wl~~~~~ 220 (322)
.+.|.++.+++.+.+|+.++..
T Consensus 87 ~l~p~~~~~ra~~~~~~~~~~~ 108 (211)
T PRK09481 87 PLMPVYPVARGESRLMMHRIEK 108 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 6666778889999999876543
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=99.65 E-value=6.5e-16 Score=139.57 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=76.8
Q ss_pred CceEEEEcC--CCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 133 TRLQLFEFE--ACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 133 ~~l~LY~~~--~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
+|++||+.+ .||+|+||+++|.|+||+|+.+.++ |+||+|+| +|.+|+||.||++||++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~~ 81 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFELSESSAIAEYLEE 81 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEEecHHHHHHHHHH
Confidence 579999976 6999999999999999999999886 99999998 68999999999999999
Q ss_pred hcCCCC---CCCCChhhHHHHHchhhhHhh
Q 020689 194 QYGKGR---SPSTGLLESTLITGWMPTIFR 220 (322)
Q Consensus 194 ~y~~~~---~p~~~~~~~a~v~~Wl~~~~~ 220 (322)
+|++.. +.|.++.+++.+.+|+.++..
T Consensus 82 ~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~ 111 (214)
T PRK15113 82 RFAPPAWERIYPADLQARARARQIQAWLRS 111 (214)
T ss_pred HcCCCCccccCCCCHHHHHHHHHHHHHHHh
Confidence 998654 666788889999999988754
No 5
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.64 E-value=5.1e-16 Score=119.67 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=69.0
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcC--CCCCChHHHHHHcCCCcccEEEcCC-CCcccccHHHHHHHHHhhc
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPN-TSTQIGDYKKILSYLFQSY 315 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~--~g~~k~~e~~~inp~~qVP~LvD~n-~g~~LfES~aIl~YL~e~y 315 (322)
|++||+++. |+|++|+++|.++||+|+.+.+. .+..+.++|+++||.++||+|++++ +|..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 478999886 99999999999999999998886 4556778999999999999999853 2789999999999999999
Q ss_pred CC
Q 020689 316 SA 317 (322)
Q Consensus 316 ~~ 317 (322)
++
T Consensus 80 ~~ 81 (81)
T cd03048 80 DK 81 (81)
T ss_pred CC
Confidence 74
No 6
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.61 E-value=1.6e-15 Score=115.94 Aligned_cols=60 Identities=30% Similarity=0.576 Sum_probs=57.1
Q ss_pred EEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCC
Q 020689 137 LFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 198 (322)
Q Consensus 137 LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~ 198 (322)
||++..||||+|||++|+++||+|+.+.++ ++||+|++ +|..|+||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999997 99999997 6899999999999999999864
No 7
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.59 E-value=2.4e-15 Score=114.85 Aligned_cols=74 Identities=28% Similarity=0.516 Sum_probs=67.4
Q ss_pred hhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCCC
Q 020689 242 LFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 318 (322)
Q Consensus 242 LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~ 318 (322)
||++..||||++||++|.++||+|+.+++..+. +++++.+++|.++||+|+++ |..++||.+|++||+++|+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~vPvL~~~--g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE-KRPEFLKLNPKGKVPVLVDD--GEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS-TSHHHHHHSTTSBSSEEEET--TEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc-chhHHHhhcccccceEEEEC--CEEEeCHHHHHHHHHHHcCCC
Confidence 688999999999999999999999999987654 47899999999999999964 789999999999999999853
No 8
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.59 E-value=2.5e-15 Score=113.26 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=65.1
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcC--CCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHh
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 313 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~--~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e 313 (322)
++||.++.||+|++++++|.++|++|+.+.++ .++++.++|+++||.++||+|+++ |..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDN--GFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEEC--CEEEEcHHHHHHHHhC
Confidence 47899999999999999999999999999886 455667899999999999999984 6899999999999975
No 9
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.59 E-value=3.9e-15 Score=111.69 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=66.1
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhc
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 315 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y 315 (322)
++||+.+.||+|++++++|.++|++|+.++++.. ++.++++++||.++||+|+++ |..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELNPYGTVPTLVDR--DLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhCCCCCCCEEEEC--CEEEEcHHHHHHHHHhhC
Confidence 4789999999999999999999999999988754 556889999999999999974 579999999999999986
No 10
>PLN02473 glutathione S-transferase
Probab=99.58 E-value=7.5e-15 Score=131.73 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=75.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHHHhcC
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYG 196 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~ 196 (322)
.|+||+++.||+|+|||++|+|+||+|+.+.++ |+||+|+| +|.+|+||.||++||+++|+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLKLFESRAIARYYATKYA 79 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHcC
Confidence 479999999999999999999999999998775 99999998 68999999999999999997
Q ss_pred CC--CCCCCChhhHHHHHchhhhHhhhc
Q 020689 197 KG--RSPSTGLLESTLITGWMPTIFRAG 222 (322)
Q Consensus 197 ~~--~~p~~~~~~~a~v~~Wl~~~~~~~ 222 (322)
+. .+.|.+..+++.+.+|+.++...+
T Consensus 80 ~~~~~l~p~~~~~ra~~~~~~~~~~~~~ 107 (214)
T PLN02473 80 DQGTDLLGKTLEHRAIVDQWVEVENNYF 107 (214)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 53 345667778999999998776543
No 11
>PRK10387 glutaredoxin 2; Provisional
Probab=99.58 E-value=5.5e-15 Score=131.85 Aligned_cols=84 Identities=31% Similarity=0.516 Sum_probs=70.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCCCCC
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSP 201 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~~~p 201 (322)
|+||++..||+|+|||++|+++||+|+.+.++ ++||+|+.+ +|.+|+||.||++||+++|++..+.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~~~l~ 79 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGKPLLT 79 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCCccCC
Confidence 68999999999999999999999999998875 799999533 6899999999999999999876543
Q ss_pred CCChhhHHHHHchhhhHhhhc
Q 020689 202 STGLLESTLITGWMPTIFRAG 222 (322)
Q Consensus 202 ~~~~~~~a~v~~Wl~~~~~~~ 222 (322)
+ .+++.+.+|++++....
T Consensus 80 --~-~~~~~~~~~~~~~~~~~ 97 (210)
T PRK10387 80 --G-KRSPAIEEWLRKVFGYL 97 (210)
T ss_pred --C-cccHHHHHHHHHHHHHh
Confidence 1 24678888988765433
No 12
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.57 E-value=4.4e-15 Score=113.63 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=63.4
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
++||.++.||+|++||++|.|+|++|+.+.++. ++++.++|+++||.++||+|+| +|..|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 368999999999999999999999999998753 4556788999999999999997 4789999999999995
No 13
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9.5e-15 Score=131.17 Aligned_cols=86 Identities=27% Similarity=0.425 Sum_probs=73.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee----------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCC
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM----------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 198 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~ 198 (322)
++||+...||+|+||+++|.|+||+|+.+.++ |+||+|+|+ +|.+|+||.||++||+++|++.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~-~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDD-DGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeC-CCCeeecHHHHHHHHHhhCCCC
Confidence 58999999999999999999999999999987 999999986 4458999999999999999987
Q ss_pred CCCCCChh---hHHHHHchhhhHhhh
Q 020689 199 RSPSTGLL---ESTLITGWMPTIFRA 221 (322)
Q Consensus 199 ~~p~~~~~---~~a~v~~Wl~~~~~~ 221 (322)
.+.|.++. +++.+..|+.+....
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~ 105 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASD 105 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhc
Confidence 34454543 788888998887443
No 14
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.57 E-value=1.3e-14 Score=130.74 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=73.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeC---CCC--eeecChHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDP---NTG--VSMYESGDIVNYL 191 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~---~~G--~~l~ES~aIi~YL 191 (322)
|++||+.+ +|+|+|||++|+|+||+|+.+.++ |+||+|+|. ++| .+|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 58999886 799999999999999999998875 999999973 245 4799999999999
Q ss_pred HHhcCCCCCCCCChhhHHHHHchhhhHhhhc
Q 020689 192 FQQYGKGRSPSTGLLESTLITGWMPTIFRAG 222 (322)
Q Consensus 192 ~~~y~~~~~p~~~~~~~a~v~~Wl~~~~~~~ 222 (322)
+++|+ .+++.++.+++.+.+|+.+....+
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~ 108 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGL 108 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhcc
Confidence 99986 355667888999999998876543
No 15
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.56 E-value=5.4e-15 Score=111.19 Aligned_cols=58 Identities=31% Similarity=0.515 Sum_probs=53.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
|+||+++.||||+|||++|.++|++|+.+.++ ++||+|+++ +|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999998876 899999974 58999999999999975
No 16
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.1e-15 Score=131.04 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=76.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee------------------cCCCeEEeCCCCeeecChHHHHHHHHHhc
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM------------------NRFPFLIDPNTGVSMYESGDIVNYLFQQY 195 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~------------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y 195 (322)
..+||.|..|.++||||++|..+|||||+++++ ++||.|++ +|.+|.||.||++||+|+|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhcC
Confidence 568999999999999999999999999999998 99999998 7999999999999999999
Q ss_pred CCCCCCCCChhhHHHHHchhhhHhh
Q 020689 196 GKGRSPSTGLLESTLITGWMPTIFR 220 (322)
Q Consensus 196 ~~~~~p~~~~~~~a~v~~Wl~~~~~ 220 (322)
+++.+.|.++..|+...+-...+..
T Consensus 83 P~ppLLP~d~~KRA~~r~i~~~i~s 107 (217)
T KOG0868|consen 83 PDPPLLPKDPHKRAKARAISLLIAS 107 (217)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 9998888898888877766665544
No 17
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-14 Score=134.36 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=80.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCC
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGK 197 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~ 197 (322)
..++||++..|||++|||++|.++||+||+++.| ++||||++ +|..++||..|++||++.|++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w~~ 85 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETWPS 85 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhccC
Confidence 4699999999999999999999999999999998 99999998 678899999999999999994
Q ss_pred -CCCCCCChhhHHHHHchhhhHhh
Q 020689 198 -GRSPSTGLLESTLITGWMPTIFR 220 (322)
Q Consensus 198 -~~~p~~~~~~~a~v~~Wl~~~~~ 220 (322)
+.+.|.|+.+|+...-|++.++.
T Consensus 86 ~~~iLP~DPy~Ra~arfwa~~id~ 109 (231)
T KOG0406|consen 86 GPPILPSDPYERAQARFWAEYIDK 109 (231)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHh
Confidence 67788999999999999998874
No 18
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.56 E-value=1.3e-14 Score=110.62 Aligned_cols=62 Identities=24% Similarity=0.531 Sum_probs=56.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee------------cCCCeEEeCC--CCeeecChHHHHHHHHHhcC
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM------------NRFPFLIDPN--TGVSMYESGDIVNYLFQQYG 196 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~------------gqVPvLvd~~--~G~~l~ES~aIi~YL~~~y~ 196 (322)
++||+++.||||+|||++|.++||+|+.+.++ ++||+|++++ +|.+|+||.+|++||+++.|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 79999999999999999999999999998876 8999999742 47899999999999998743
No 19
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.55 E-value=1.9e-14 Score=127.97 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=73.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCCCC
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRS 200 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~~~ 200 (322)
++||++..||++++||++|+++||+|+.+.++ |+||+|+++ +|.+|+||.+|++||+++|+++.+
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCCCCC
Confidence 58999999999999999999999999987765 999999853 688999999999999999876656
Q ss_pred CCCChhhHHHHHchhhhHhhh
Q 020689 201 PSTGLLESTLITGWMPTIFRA 221 (322)
Q Consensus 201 p~~~~~~~a~v~~Wl~~~~~~ 221 (322)
.|.++.+++.+.+|+.++...
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~ 100 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGI 100 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 666777788888887665443
No 20
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.55 E-value=1.3e-14 Score=110.00 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=65.2
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCC-CcccEEEcCCCCcccccHHHHHHHHHhhc
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGS-KEVPYLIDPNTSTQIGDYKKILSYLFQSY 315 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~-~qVP~LvD~n~g~~LfES~aIl~YL~e~y 315 (322)
|+||++..||+|+++|++|.++||+|+.+.++.. ++.++|+++||. ++||+|+++ |..++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~--~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHN--GKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEEC--CEEeehHHHHHHHHHhhC
Confidence 5789999999999999999999999999887653 567789999995 999999984 688999999999999875
No 21
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.55 E-value=1.1e-14 Score=131.38 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=70.5
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCCC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 318 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~ 318 (322)
+++||++..||+|++|+++|.++||+|+.+.++.. ++.++|+++||.++||+|+| +|..|+||.+|++||+++|+..
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCCC
Confidence 68999999999999999999999999999998763 56689999999999999998 4789999999999999999853
No 22
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.54 E-value=2.2e-14 Score=109.55 Aligned_cols=61 Identities=25% Similarity=0.456 Sum_probs=56.5
Q ss_pred ceEEEEcC-------CCchHHHHHHHHHHcCCceEEEEee-------cCCCeEEeCCCCeeecChHHHHHHHHHhcC
Q 020689 134 RLQLFEFE-------ACPFCRRVREAITELDLSVELSGCM-------NRFPFLIDPNTGVSMYESGDIVNYLFQQYG 196 (322)
Q Consensus 134 ~l~LY~~~-------~sp~c~rVR~~L~elgl~ye~~~v~-------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~ 196 (322)
|++||+++ .||+|+||+++|.++|++|+.+.++ |+||+|++ +|..|+||.+|++||+++|+
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~~~~p~g~vPvl~~--~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLAKRSPKGKLPFIEL--NGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcccCCCCCCCCEEEE--CCEEEcCHHHHHHHHHHHcC
Confidence 57999998 5799999999999999999998876 99999998 58999999999999999986
No 23
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.54 E-value=2.5e-14 Score=110.24 Aligned_cols=63 Identities=32% Similarity=0.536 Sum_probs=56.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCC-CCeeecChHHHHHHHHHhc
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPN-TGVSMYESGDIVNYLFQQY 195 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~-~G~~l~ES~aIi~YL~~~y 195 (322)
|++||+++. |+|++||++|+++||+|+.+.++ ++||+|+|++ +|..|+||.||++||+++|
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 589999986 99999999999999999998775 8999999852 1889999999999999998
Q ss_pred CC
Q 020689 196 GK 197 (322)
Q Consensus 196 ~~ 197 (322)
+.
T Consensus 80 ~~ 81 (81)
T cd03048 80 DK 81 (81)
T ss_pred CC
Confidence 73
No 24
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.54 E-value=2.2e-14 Score=107.57 Aligned_cols=59 Identities=29% Similarity=0.470 Sum_probs=55.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHhc
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQY 195 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y 195 (322)
|+||+.+.||+|+++|++|+++|++|+.+.++ |+||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 68999999999999999999999999998876 99999997 5789999999999999876
No 25
>PRK11752 putative S-transferase; Provisional
Probab=99.53 E-value=4.1e-14 Score=132.83 Aligned_cols=88 Identities=23% Similarity=0.327 Sum_probs=73.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHc------CCceEEEEee-----------------cCCCeEEeCCC--CeeecCh
Q 020689 130 DSPTRLQLFEFEACPFCRRVREAITEL------DLSVELSGCM-----------------NRFPFLIDPNT--GVSMYES 184 (322)
Q Consensus 130 ~p~~~l~LY~~~~sp~c~rVR~~L~el------gl~ye~~~v~-----------------gqVPvLvd~~~--G~~l~ES 184 (322)
-..++|+||+.. ||+|+||+++|+|+ |++|+.+.++ |+||+|+|+++ |.+|+||
T Consensus 40 ~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES 118 (264)
T PRK11752 40 VGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFES 118 (264)
T ss_pred CCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcH
Confidence 334689999975 99999999999997 9999988775 99999998522 4799999
Q ss_pred HHHHHHHHHhcCCCCCCCCChhhHHHHHchhhhHhh
Q 020689 185 GDIVNYLFQQYGKGRSPSTGLLESTLITGWMPTIFR 220 (322)
Q Consensus 185 ~aIi~YL~~~y~~~~~p~~~~~~~a~v~~Wl~~~~~ 220 (322)
.||++||+++|+. +.|.++.+++.+.+|+.+...
T Consensus 119 ~AIl~YL~~~~~~--L~P~~~~era~v~~wl~~~~~ 152 (264)
T PRK11752 119 GAILLYLAEKFGA--FLPKDLAARTETLNWLFWQQG 152 (264)
T ss_pred HHHHHHHHHhcCC--cCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999973 445678889999999887644
No 26
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.53 E-value=2.5e-14 Score=108.97 Aligned_cols=74 Identities=22% Similarity=0.242 Sum_probs=65.6
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhc
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 315 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y 315 (322)
++||+++.|++|++++++|.++|++|+.+.++. +++..+++.++||.++||+|+++ |..++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~--~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDG--DFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEEC--CEEEEcHHHHHHHHHhhC
Confidence 468999999999999999999999999998853 34456789999999999999974 678999999999999986
No 27
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.53 E-value=1.9e-14 Score=107.48 Aligned_cols=72 Identities=26% Similarity=0.275 Sum_probs=63.3
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
++||+++.||+|+++|++|.++||+|+.+.++. +..+.+++.++||.++||+|+++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 478999999999999999999999999988753 34566789999999999999864 4678999999999985
No 28
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.53 E-value=3.1e-14 Score=107.91 Aligned_cols=59 Identities=29% Similarity=0.394 Sum_probs=54.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHHHhc
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLFQQY 195 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y 195 (322)
|+||++..||+|+|||++|+++||+|+.+.++ ++||+|+| +|.+++||.+|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 68999999999999999999999999998765 79999998 5889999999999999875
No 29
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.52 E-value=2.6e-14 Score=107.71 Aligned_cols=57 Identities=30% Similarity=0.551 Sum_probs=53.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
++||+++.||+|++||++|+++|++|+.+.++ |+||+|++ +|.+|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999998875 89999998 57899999999999974
No 30
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.52 E-value=2.7e-14 Score=107.72 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=62.2
Q ss_pred hhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHH
Q 020689 241 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 311 (322)
Q Consensus 241 ~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL 311 (322)
++|++..||||++++++|+++|++|+.++++.. .+.++|+++||.++||+|+++ +|..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~-~~~~~~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK-NKPAEMLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC-CCCHHHHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 689999999999999999999999999998754 345789999999999999975 478899999999997
No 31
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.51 E-value=2.7e-14 Score=107.35 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=61.4
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHh
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 313 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e 313 (322)
++||.+..||||++||++|.++|++|+.+.++.+. ....++.+|.++||+|+++ +|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~--~~~~~~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD--EATPIRMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc--hHHHHHhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 47899999999999999999999999999887543 2345678999999999975 36899999999999975
No 32
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.51 E-value=3e-14 Score=106.50 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=64.0
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcC--CCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~--~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
++||.++.||+|++++++|.++|++|+.+.++ .++++.+++.++||.++||+|+++ |..++||.+|++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~--~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELD--GRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEEC--CEEEEcHHHHHHHhC
Confidence 47899999999999999999999999999886 445677889999999999999985 689999999999984
No 33
>PRK15113 glutathione S-transferase; Provisional
Probab=99.51 E-value=2.9e-14 Score=128.80 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=70.2
Q ss_pred cchhhhccc--CChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHh
Q 020689 238 KKLELFSYE--NNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 313 (322)
Q Consensus 238 ~~i~LY~~~--~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e 313 (322)
++++||+.. .||+|++|+++|.|+||+|+.+.++. ++++.++|+++||.++||+|+|+ |..|+||.+|++||++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~--~~~l~ES~aI~~YL~~ 81 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHD--DFELSESSAIAEYLEE 81 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEEC--CEEEecHHHHHHHHHH
Confidence 467899975 69999999999999999999998864 55677899999999999999984 6899999999999999
Q ss_pred hcCCC
Q 020689 314 SYSAS 318 (322)
Q Consensus 314 ~y~~~ 318 (322)
+|+..
T Consensus 82 ~~~~~ 86 (214)
T PRK15113 82 RFAPP 86 (214)
T ss_pred HcCCC
Confidence 99753
No 34
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.51 E-value=3.4e-14 Score=108.69 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=52.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
++||+++.||+|+|||++|+|+|++|+.+.++ |+||+|+| +|.+|+||.||++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 47999999999999999999999999999875 99999998 6899999999999995
No 35
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.50 E-value=3e-14 Score=108.62 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=63.3
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCC--CCcccccHHHHHHHHHhhcC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPN--TSTQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n--~g~~LfES~aIl~YL~e~y~ 316 (322)
+++||.++.||||+++|.+|.++||+|+.++++.. ...+ ++.+|.++||+|++++ +|..|+||.+|++||+++-+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch--hHHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 36899999999999999999999999999987542 2334 4679999999999753 47899999999999998753
No 36
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.50 E-value=5.9e-14 Score=107.00 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=64.8
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~ 316 (322)
++||.++.+ ++++||++|.++||+|+.+.++. ++++.++++++||.++||+|+++ +|..++||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 468888866 58899999999999999987753 44567899999999999999985 37899999999999999985
No 37
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.50 E-value=4.6e-14 Score=106.99 Aligned_cols=73 Identities=22% Similarity=0.232 Sum_probs=64.8
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhh
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 314 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~ 314 (322)
++||.++.||+|+++|++|.++|++|+.+.++. ++++.+++.++||.++||+|+++ |..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~--g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDG--DLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEEC--CEEEEcHHHHHHHHhhC
Confidence 679999999999999999999999999988753 33556789999999999999984 68999999999999874
No 38
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.50 E-value=4.1e-14 Score=107.09 Aligned_cols=71 Identities=27% Similarity=0.302 Sum_probs=63.2
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcC--CCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~--~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
++||+++.||++++||++|.++|++|+.+.++ .++++.++|+++||.++||+|+|+ |..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~--~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDG--DFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEEC--CEEEECHHHHHHHhC
Confidence 46899999999999999999999999998875 344567899999999999999985 678999999999984
No 39
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.8e-14 Score=126.08 Aligned_cols=78 Identities=28% Similarity=0.461 Sum_probs=70.1
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCC-CCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCCC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDG-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 318 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g-~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~ 318 (322)
++||+...||||++|+++|.|+||+|+.+.|+.. +++.++|+++||.++||+|++++ |..|+||.+|++||+++|+..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~-~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDD-GEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCC-CCeeecHHHHHHHHHhhCCCC
Confidence 4688999999999999999999999999998765 46788999999999999999874 338999999999999999875
No 40
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.49 E-value=6.1e-14 Score=104.75 Aligned_cols=57 Identities=30% Similarity=0.370 Sum_probs=52.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
++||+++.||+|+|+|++|.++||+|+.+.++ ++||+|+++ +|..|+||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 58999999999999999999999999998875 899999864 6789999999999985
No 41
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.49 E-value=9.4e-14 Score=105.76 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=55.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHHHhc
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLFQQY 195 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y 195 (322)
++||+++.|++|++|+++|+++|++|+.+.++ ++||+|++ +|..|+||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 57999999999999999999999999998875 99999998 5789999999999999876
No 42
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.48 E-value=9.5e-14 Score=125.59 Aligned_cols=83 Identities=28% Similarity=0.452 Sum_probs=68.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCceEEEEee-------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCCCCCC
Q 020689 136 QLFEFEACPFCRRVREAITELDLSVELSGCM-------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPS 202 (322)
Q Consensus 136 ~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~~~p~ 202 (322)
+||++..||||+|||++|+++||+|+.+.++ |+||+|+++ +|.+|+||.+|++||+++|+.+.+++
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~-~g~~l~es~~I~~yL~~~~~~~~~~~ 79 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKD-DGRAMPESLDIVAYFDKLDGEPLLTG 79 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEee-CCeEeccHHHHHHHHHHhCCCccCCC
Confidence 5899999999999999999999999988764 999999832 78999999999999999998654332
Q ss_pred CChhhHHHHHchhhhHhhhc
Q 020689 203 TGLLESTLITGWMPTIFRAG 222 (322)
Q Consensus 203 ~~~~~~a~v~~Wl~~~~~~~ 222 (322)
..++.+.+|+.++...+
T Consensus 80 ---~~~~~~~~~~~~~~~~~ 96 (209)
T TIGR02182 80 ---KVSPEIEAWLRKVTGYA 96 (209)
T ss_pred ---CChHHHHHHHHHHHHHh
Confidence 23567788887755544
No 43
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.48 E-value=1e-13 Score=104.46 Aligned_cols=55 Identities=31% Similarity=0.530 Sum_probs=51.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHH
Q 020689 136 QLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYL 191 (322)
Q Consensus 136 ~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL 191 (322)
+||+++.||+|+|||++|+++|++|+.+.++ |+||+|+++ +|..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 7999999999999999999999999999886 999999984 689999999999997
No 44
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.48 E-value=1.3e-13 Score=110.91 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=63.1
Q ss_pred cCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCCCC
Q 020689 246 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSASP 319 (322)
Q Consensus 246 ~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~~ 319 (322)
..||||++||++|.++||+|+.++++.. .+.++|+++||.++||+|+|+ |..++||.+|++||+++|...+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~-~~p~~~~~~nP~g~vPvL~~~--~~~i~eS~~I~eYLde~~~~~~ 90 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK-RKPEDLKDLAPGTQPPFLLYN--GEVKTDNNKIEEFLEETLCPPK 90 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC-CCCHHHHHhCCCCCCCEEEEC--CEEecCHHHHHHHHHHHccCCC
Confidence 5799999999999999999999988754 345789999999999999984 7899999999999999998653
No 45
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.47 E-value=1.3e-13 Score=105.21 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=64.2
Q ss_pred hhhcccCChhhHHHHHHHhcCCCceEEEEcCCC-CCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHh
Q 020689 241 ELFSYENNPYARIVREALCELELPYILQNVGDG-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 313 (322)
Q Consensus 241 ~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g-~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e 313 (322)
+||.++.||+|+++|++|.++|++|+.+.++.. .++.++|+++||.++||+|+++ +|..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 579999999999999999999999999988653 2567899999999999999975 46789999999999976
No 46
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.47 E-value=1.4e-13 Score=108.80 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=65.9
Q ss_pred CCcchhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 236 PSKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 236 pe~~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
...+++||.++.||+|++|+++|.++||+|+.++++.. .+.+++.+.||.++||+|+++ +|..++||.+|++||+
T Consensus 15 ~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~-~~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 15 VPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK-DKPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC-CCcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 45679999999999999999999999999999988653 345678999999999999974 3688999999999985
No 47
>PLN02395 glutathione S-transferase
Probab=99.46 E-value=3.1e-13 Score=121.17 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=72.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHHHhcC
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYG 196 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~ 196 (322)
.++||+...| +++||+++|+|+||+|+.+.++ |+||+|+| +|.+|+||.+|++||+++|+
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~~ 78 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKYR 78 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHcC
Confidence 4799997664 6899999999999999998775 99999998 67899999999999999997
Q ss_pred CC--CCCCCChhhHHHHHchhhhHhhh
Q 020689 197 KG--RSPSTGLLESTLITGWMPTIFRA 221 (322)
Q Consensus 197 ~~--~~p~~~~~~~a~v~~Wl~~~~~~ 221 (322)
.. .+.|.++.+++.+.+|+.+....
T Consensus 79 ~~~~~l~p~~~~~~~~~~~~~~~~~~~ 105 (215)
T PLN02395 79 SQGPDLLGKTIEERGQVEQWLDVEATS 105 (215)
T ss_pred CCCcCcCCCChhHHHHHHHHHHHHHHh
Confidence 52 35566778899999999876543
No 48
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.46 E-value=9.7e-14 Score=125.14 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=66.9
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcC---CCC--cccccHHHHHHHH
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDP---NTS--TQIGDYKKILSYL 311 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~---n~g--~~LfES~aIl~YL 311 (322)
|++||..+ +|+|++|+++|.|+||+|+.+.++. ++++.++|+++||.++||+|+|+ ++| +.|+||.+|++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 46889776 7999999999999999999988753 55667899999999999999984 244 5799999999999
Q ss_pred HhhcCC
Q 020689 312 FQSYSA 317 (322)
Q Consensus 312 ~e~y~~ 317 (322)
+++|+.
T Consensus 80 ~~~~~~ 85 (215)
T PRK13972 80 AEKTGL 85 (215)
T ss_pred HHhcCC
Confidence 999863
No 49
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.46 E-value=2e-13 Score=120.99 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=72.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee------------------cCCCeEEeCCCCeeecChHHHHHHHHHhcC
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM------------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYG 196 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~------------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~ 196 (322)
|+||+...+ ++++|+++|+|+||+|+.+.++ |+||+|+++ +|.+|+||.+|++||+++|+
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhCc
Confidence 589998765 7999999999999999988765 999999854 78999999999999999998
Q ss_pred CCC-CCCCChhhHHHHHchhhhHhhh
Q 020689 197 KGR-SPSTGLLESTLITGWMPTIFRA 221 (322)
Q Consensus 197 ~~~-~p~~~~~~~a~v~~Wl~~~~~~ 221 (322)
++. +++.++.+++.+.+|+.++...
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~ 104 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATE 104 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhh
Confidence 765 4455677889999999877543
No 50
>PLN02473 glutathione S-transferase
Probab=99.46 E-value=1.2e-13 Score=124.04 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=69.3
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~ 316 (322)
.++||+...||++++|+++|.++||+|+.+.++. ++++.++++++||.++||+|+|+ |..|+||.+|++||+++|+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~--g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDG--DLKLFESRAIARYYATKYA 79 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEEC--CEEEEehHHHHHHHHHHcC
Confidence 4689999999999999999999999999987743 45678899999999999999984 6899999999999999997
Q ss_pred C
Q 020689 317 A 317 (322)
Q Consensus 317 ~ 317 (322)
.
T Consensus 80 ~ 80 (214)
T PLN02473 80 D 80 (214)
T ss_pred C
Confidence 5
No 51
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.46 E-value=2e-13 Score=121.82 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=73.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCceEEEEee------------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCC
Q 020689 136 QLFEFEACPFCRRVREAITELDLSVELSGCM------------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGK 197 (322)
Q Consensus 136 ~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~------------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~ 197 (322)
+||++..||+|++||++|.++||+|+.+.++ |+||+|+| +|.+|+||.+|++||+++|++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCCC
Confidence 5899999999999999999999999986543 99999998 689999999999999999987
Q ss_pred CCCCCCChhhHHHHHchhhhHhh
Q 020689 198 GRSPSTGLLESTLITGWMPTIFR 220 (322)
Q Consensus 198 ~~~p~~~~~~~a~v~~Wl~~~~~ 220 (322)
..+.+.+..+++.+.+|+.++..
T Consensus 79 ~~l~p~~~~~~a~~~~~~~~~~~ 101 (210)
T TIGR01262 79 PPLLPADPIKRARVRALALLIAC 101 (210)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhc
Confidence 65656778889999999887653
No 52
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.46 E-value=2e-13 Score=103.52 Aligned_cols=58 Identities=28% Similarity=0.406 Sum_probs=53.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHHHh
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLFQQ 194 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~ 194 (322)
++||+++.||+|++||++|+++|++|+.+.++ ++||+|++ +|..|+||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 78999999999999999999999999998765 99999998 588999999999999864
No 53
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.46 E-value=1.9e-13 Score=103.97 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=54.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHh
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQ 194 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~ 194 (322)
+++||+++.|++|++||++|.++|++|+.+.++ ++||+|+| +|..|+||.||++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 479999999999999999999999999999874 99999998 678999999999999863
No 54
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.45 E-value=1.4e-13 Score=104.23 Aligned_cols=67 Identities=34% Similarity=0.521 Sum_probs=56.9
Q ss_pred CChhhHHHHHHHhcCCCceEEEEc---CCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhh
Q 020689 247 NNPYARIVREALCELELPYILQNV---GDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 314 (322)
Q Consensus 247 ~SPf~rrVR~aL~ElgLpYe~~~V---~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~ 314 (322)
.|||++||+++|.++||+|+...+ ..+..+.++|.++||.++||+|+|+ +|..++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 499999999999999999998876 2344556889999999999999987 567999999999999975
No 55
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.45 E-value=6.4e-14 Score=105.63 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=63.0
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHh
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 313 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e 313 (322)
++||.++.+++|++||++|.++||+|+.+.++......+++.++||.++||+|+|+ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~--~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEID--GKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEEC--CEEEEecHHHHHHhhC
Confidence 46899999999999999999999999999887544444568899999999999984 6899999999999974
No 56
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.45 E-value=1.9e-13 Score=103.23 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=64.4
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~ 316 (322)
++||.+.. +++++||++|.++|++|+.+.++. +..+.++|+++||.++||+|+++ |..++||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~--g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDG--DLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEEC--CEEEEcHHHHHHHHHHhCc
Confidence 36787775 579999999999999999988764 35677899999999999999974 6899999999999999985
No 57
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.45 E-value=1.9e-13 Score=103.09 Aligned_cols=71 Identities=27% Similarity=0.273 Sum_probs=62.9
Q ss_pred hhhhcccCChhhHHHHHHHhc--CCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCE--LELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~E--lgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
++||.+..||+|+++|++|.+ +|++|+.+.++. ..+.++|+++||.++||+|+++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNP-WSDDESLLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCc-ccCChHHHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 478999999999999999999 899999998864 3456789999999999999864 4689999999999985
No 58
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.44 E-value=2.9e-13 Score=106.98 Aligned_cols=62 Identities=26% Similarity=0.444 Sum_probs=56.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 130 DSPTRLQLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 130 ~p~~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
.-+.+++||+++.||+|+|||++|.++||+|+.+.++ ++||+|+++ +|..|+||.||++||+
T Consensus 14 ~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 14 PVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 4456899999999999999999999999999998886 899999974 4889999999999985
No 59
>PRK10387 glutaredoxin 2; Provisional
Probab=99.44 E-value=1.7e-13 Score=122.27 Aligned_cols=76 Identities=18% Similarity=0.341 Sum_probs=65.0
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCCC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 318 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~ 318 (322)
++||++..||||++||++|+++||||+.+++..+.++. ..+.+|.++||+|+.+ +|..|+||.+|++||+++|+..
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~--~~~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT--PIRMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh--HHHhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCCc
Confidence 57899999999999999999999999999986654332 2678999999999533 4789999999999999999853
No 60
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.43 E-value=2.8e-13 Score=101.23 Aligned_cols=56 Identities=27% Similarity=0.381 Sum_probs=52.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
++||+++.||+|++||++|+++|++|+.+.++ ++||+|+| +|..|+||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999998875 89999998 5899999999999984
No 61
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.43 E-value=1.1e-13 Score=105.26 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=63.4
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhh
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 314 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~ 314 (322)
++||.++.+++|+++|++|.++|++|+.+.+..+ +..+++.++||.++||+|+|+ |..++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKMLFGQLPCFKDG--DLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCCCCCCCEEEEC--CEEEEcHHHHHHHHhcC
Confidence 6789999999999999999999999999988652 345578999999999999984 67899999999999863
No 62
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.43 E-value=3.1e-13 Score=108.69 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=52.2
Q ss_pred CCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCC
Q 020689 141 EACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 198 (322)
Q Consensus 141 ~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~ 198 (322)
..||||+|||++|.||||+|+++.++ |+||+|+| +|.+++||.+|++||+++|..+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCC
Confidence 46999999999999999999999996 99999998 6899999999999999998764
No 63
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.43 E-value=3.1e-13 Score=101.82 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=53.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
++||+++.|++|++||++|+++||+|+.+.++ ++||+|+| +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999998876 99999998 57999999999999974
No 64
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.43 E-value=4.7e-13 Score=101.97 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=54.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHHHhcC
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYG 196 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~ 196 (322)
++||+++.| +|++||++|.++|++|+.+.++ ++||+|+++ +|..|+||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 589999876 6899999999999999998775 999999984 58999999999999999885
No 65
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.41 E-value=7e-13 Score=102.66 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=55.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee----------------cCCCeEEeCCCCeeecChHHHHHHHHHhcC
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM----------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYG 196 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~ 196 (322)
.+||+++.++.|++||++|+|+|++|+.+.++ |+||+|+| +|..|+||.||++||+++|+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHHHcC
Confidence 47999999999999999999999999988774 69999998 67999999999999999987
No 66
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.41 E-value=4.7e-13 Score=101.28 Aligned_cols=56 Identities=27% Similarity=0.347 Sum_probs=51.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
++||+++.||+|++||++|+|+|++|+.+.++ ++||+|+| +|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 58999999999999999999999999988764 99999998 5789999999999984
No 67
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.41 E-value=4.4e-13 Score=101.14 Aligned_cols=57 Identities=32% Similarity=0.462 Sum_probs=52.5
Q ss_pred eEEEEcCCCchHHHHHHHHHH--cCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITE--LDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~e--lgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
++||++..||+|+|||++|++ +|++|+.+.++ ++||+|+++ +|..|+||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 589999999999999999999 89999998885 999999864 6899999999999985
No 68
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.41 E-value=5.2e-13 Score=101.12 Aligned_cols=52 Identities=38% Similarity=0.587 Sum_probs=46.5
Q ss_pred CCchHHHHHHHHHHcCCceEEEEee------------------cCCCeEEeCCCCeeecChHHHHHHHHHh
Q 020689 142 ACPFCRRVREAITELDLSVELSGCM------------------NRFPFLIDPNTGVSMYESGDIVNYLFQQ 194 (322)
Q Consensus 142 ~sp~c~rVR~~L~elgl~ye~~~v~------------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~ 194 (322)
.||||+||+++|+++||+|++..++ |+||+|+|+ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 4999999999999999999998883 999999997 789999999999999974
No 69
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.40 E-value=5.2e-13 Score=99.94 Aligned_cols=71 Identities=24% Similarity=0.207 Sum_probs=63.1
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
++||.+..|++|+++|++|.++|++|+.+.++. +..+.+++.+++|.++||+|+|+ |..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVID--GLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEEC--CEEEEcHHHHHHHhC
Confidence 478999999999999999999999999988753 44567889999999999999985 679999999999985
No 70
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.40 E-value=5e-13 Score=102.01 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=59.1
Q ss_pred chhhhccc-------CChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHH
Q 020689 239 KLELFSYE-------NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 311 (322)
Q Consensus 239 ~i~LY~~~-------~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL 311 (322)
|++||.+. .||+|++|+++|.++|++|+.+.+.. .+++|.++||+|+++ |..++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~--g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELN--GEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEEC--CEEEcCHHHHHHHH
Confidence 35777776 58999999999999999999887643 267999999999984 68999999999999
Q ss_pred HhhcC
Q 020689 312 FQSYS 316 (322)
Q Consensus 312 ~e~y~ 316 (322)
+++|+
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99985
No 71
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.40 E-value=7.7e-13 Score=102.86 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=49.5
Q ss_pred CCCchHHHHHHHHHHcCCceEEEEee----------------cCCCeEEeCCCCeeecChHHHHHHHHHhcC
Q 020689 141 EACPFCRRVREAITELDLSVELSGCM----------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYG 196 (322)
Q Consensus 141 ~~sp~c~rVR~~L~elgl~ye~~~v~----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~ 196 (322)
..||||+|||++|.++||+|+.+.++ ++||+|+|+ +|.+|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 47999999999999999999988764 799999983 37899999999999999875
No 72
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.3e-13 Score=119.94 Aligned_cols=93 Identities=27% Similarity=0.424 Sum_probs=76.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCCCCC
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSP 201 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~~~p 201 (322)
|+||-|++||||.|+|++...+|||++.+... .|||+|+-+ +|..|.||.+|++|+++.++.+.+-
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Ke-dg~~m~ESlDIV~y~d~~~~~~~lt 79 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKE-DGRAMPESLDIVHYVDELDGKPLLT 79 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEcc-ccccchhhhHHHHHHHHhcCchhhc
Confidence 68999999999999999999999999988765 899999865 8999999999999999998865321
Q ss_pred CCChhhHHHHHchhhhHhhhcC--CccccccC
Q 020689 202 STGLLESTLITGWMPTIFRAGR--GMTLWEKA 231 (322)
Q Consensus 202 ~~~~~~~a~v~~Wl~~~~~~~~--g~~~~~~~ 231 (322)
..-+..+..|+..+..... ++++|.+.
T Consensus 80 ---~~~~pai~~wlrkv~~y~nkll~PR~~k~ 108 (215)
T COG2999 80 ---GKVRPAIEAWLRKVNGYLNKLLLPRFAKS 108 (215)
T ss_pred ---cCcCHHHHHHHHHhcchHhhhhhhhHhhc
Confidence 1224678899998876554 56777643
No 73
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.39 E-value=1.3e-12 Score=98.74 Aligned_cols=59 Identities=29% Similarity=0.455 Sum_probs=53.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHHHhcC
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYG 196 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~ 196 (322)
++||+++. ++|++||++|+++|++|+.+.++ ++||+|+| +|..|+||.||++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 58999876 68999999999999999998775 89999998 68899999999999999885
No 74
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.38 E-value=6.9e-13 Score=103.10 Aligned_cols=69 Identities=28% Similarity=0.258 Sum_probs=57.6
Q ss_pred cCChhhHHHHHHHhcCCCceEEEEcCCC--CCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcC
Q 020689 246 ENNPYARIVREALCELELPYILQNVGDG--SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 246 ~~SPf~rrVR~aL~ElgLpYe~~~V~~g--~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~ 316 (322)
..||||+++|++|.++||+|+.+.+... .+..+++ ++||.++||+|+++ +|..++||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 5699999999999999999999887532 2223344 88999999999984 36789999999999999985
No 75
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.3e-13 Score=118.74 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=70.0
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcC--CC-CCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhc
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVG--DG-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 315 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~--~g-~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y 315 (322)
+..||+|..|..++|||++|..+||+|+.+.|. ++ .+...+|.++||.++||.|++ +|.++.||.||++||+|+|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhcC
Confidence 578999999999999999999999999999874 22 344569999999999999998 4899999999999999999
Q ss_pred CCCC
Q 020689 316 SASP 319 (322)
Q Consensus 316 ~~~~ 319 (322)
++..
T Consensus 83 P~pp 86 (217)
T KOG0868|consen 83 PDPP 86 (217)
T ss_pred CCCC
Confidence 9754
No 76
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.37 E-value=1.3e-12 Score=99.69 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=53.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCceEEEEee----------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 136 QLFEFEACPFCRRVREAITELDLSVELSGCM----------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 136 ~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
+||+++.||+|+++|++|+++|++|+.+.++ |+||+|+++ +|.+|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 6999999999999999999999999998875 999999975 58899999999999986
No 77
>PRK11752 putative S-transferase; Provisional
Probab=99.37 E-value=8.8e-13 Score=123.84 Aligned_cols=81 Identities=25% Similarity=0.356 Sum_probs=69.3
Q ss_pred CCcchhhhcccCChhhHHHHHHHhcC------CCceEEEEcC--CCCCChHHHHHHcCCCcccEEEcCCC--CcccccHH
Q 020689 236 PSKKLELFSYENNPYARIVREALCEL------ELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNT--STQIGDYK 305 (322)
Q Consensus 236 pe~~i~LY~~~~SPf~rrVR~aL~El------gLpYe~~~V~--~g~~k~~e~~~inp~~qVP~LvD~n~--g~~LfES~ 305 (322)
..++++||+.. ||+|++|+++|.|+ |++|+.+.|+ .++++.++|+++||.++||+|+++++ |+.|+||.
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~ 119 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESG 119 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHH
Confidence 34579999865 99999999999997 8999988764 34566789999999999999998642 57899999
Q ss_pred HHHHHHHhhcCC
Q 020689 306 KILSYLFQSYSA 317 (322)
Q Consensus 306 aIl~YL~e~y~~ 317 (322)
+|++||+++|+.
T Consensus 120 AIl~YL~~~~~~ 131 (264)
T PRK11752 120 AILLYLAEKFGA 131 (264)
T ss_pred HHHHHHHHhcCC
Confidence 999999999973
No 78
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.37 E-value=1.2e-12 Score=98.03 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=52.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
|+||++..|++|+++|++|+++|++|+.+.++ ++||+|+| +|..|+||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999998775 89999998 5789999999999984
No 79
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.2e-12 Score=117.77 Aligned_cols=88 Identities=31% Similarity=0.463 Sum_probs=78.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHHHhcC
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYG 196 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~ 196 (322)
.++||++..+|.|++|.+++.++|++||.+.++ |+||+|+| +|..++||.||+.||+++|+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky~ 79 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALED--GGLTLWESHAILRYLAEKYG 79 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHcC
Confidence 578999999999999999999999999999887 99999999 59999999999999999997
Q ss_pred -CCC-CCCCChhhHHHHHchhhhHhhhcC
Q 020689 197 -KGR-SPSTGLLESTLITGWMPTIFRAGR 223 (322)
Q Consensus 197 -~~~-~p~~~~~~~a~v~~Wl~~~~~~~~ 223 (322)
.+. +++.+..+++.+.+|+++....+.
T Consensus 80 ~~~~~l~p~~~~~ra~v~~~l~~~~~~l~ 108 (226)
T KOG0867|consen 80 PLGGILLPKDLKERAIVDQWLEFENGVLD 108 (226)
T ss_pred CCCcccCCcCHHHHHHHHHHHHhhhcccc
Confidence 333 677888889999999987666544
No 80
>PLN02378 glutathione S-transferase DHAR1
Probab=99.35 E-value=2.3e-12 Score=116.75 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=61.5
Q ss_pred EcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCCCCCCCC
Q 020689 139 EFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPSTG 204 (322)
Q Consensus 139 ~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~~~p~~~ 204 (322)
.+..||||+||+++|+|+|++|+.+.++ |+||+|+| +|.+|+||.+|++||+++|++..+ .+
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~~~~l--~~ 91 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYPDPPL--KT 91 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCCCCCC--CC
Confidence 4456999999999999999999999987 99999998 578999999999999999986533 34
Q ss_pred hhhHHHHHchhh
Q 020689 205 LLESTLITGWMP 216 (322)
Q Consensus 205 ~~~~a~v~~Wl~ 216 (322)
+.+++.+.+++.
T Consensus 92 ~~~~a~i~~~~~ 103 (213)
T PLN02378 92 PAEFASVGSNIF 103 (213)
T ss_pred HHHHHHHHHHHH
Confidence 556666665544
No 81
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.35 E-value=2.6e-12 Score=96.90 Aligned_cols=58 Identities=24% Similarity=0.470 Sum_probs=52.8
Q ss_pred eEEEEcC-------CCchHHHHHHHHHHcCCceEEEEee-------cCCCeEEeCCCCeeecChHHHHHHHHHh
Q 020689 135 LQLFEFE-------ACPFCRRVREAITELDLSVELSGCM-------NRFPFLIDPNTGVSMYESGDIVNYLFQQ 194 (322)
Q Consensus 135 l~LY~~~-------~sp~c~rVR~~L~elgl~ye~~~v~-------gqVPvLvd~~~G~~l~ES~aIi~YL~~~ 194 (322)
++||.+. .||+|++|+++|+++||+|+.+.++ |+||+|++ +|..++||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~~~p~g~vP~l~~--~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPWRSPTGKLPFLEL--NGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcccCCCcccCEEEE--CCEEEcCHHHHHHHHhhC
Confidence 4677777 7999999999999999999999887 99999998 688999999999999874
No 82
>PLN02378 glutathione S-transferase DHAR1
Probab=99.34 E-value=2.2e-12 Score=116.84 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=62.8
Q ss_pred ccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCCC
Q 020689 245 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 318 (322)
Q Consensus 245 ~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~ 318 (322)
+..||||++|+++|.++|++|+.+.|+.. .+.++|+++||.|+||+|+++ |..|+||.+|++||+++|+..
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~l~inP~G~VPvL~~~--~~~l~ES~aI~~YL~~~~~~~ 87 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLS-DKPQWFLDISPQGKVPVLKID--DKWVTDSDVIVGILEEKYPDP 87 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcc-cCCHHHHHhCCCCCCCEEEEC--CEEecCHHHHHHHHHHhCCCC
Confidence 45699999999999999999999988753 456789999999999999984 568999999999999999853
No 83
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.34 E-value=2.2e-12 Score=116.64 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=64.4
Q ss_pred hhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCC
Q 020689 241 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 317 (322)
Q Consensus 241 ~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~ 317 (322)
+||.+..||||++||++|.++||+|+.+++..+.++ ...++||.++||+|+++ +|..++||.+|++||+++|+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~~~~np~g~vP~l~~~-~g~~l~es~~I~~yL~~~~~~ 74 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TPIRMIGAKQVPILQKD-DGRAMPESLDIVAYFDKLDGE 74 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hHHHhcCCCCcceEEee-CCeEeccHHHHHHHHHHhCCC
Confidence 579999999999999999999999999988665443 34789999999999832 478999999999999999975
No 84
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.34 E-value=2.3e-12 Score=92.97 Aligned_cols=71 Identities=31% Similarity=0.408 Sum_probs=62.4
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
+++|.++.||+|++++++|.+++++|+.+.+........++.+.+|.+++|+|+++ |..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~--~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDG--GLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEEC--CEEEEcHHHHHHHhC
Confidence 46899999999999999999999999999987654444468889999999999985 689999999999984
No 85
>PLN02395 glutathione S-transferase
Probab=99.33 E-value=2.8e-12 Score=115.01 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=65.5
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~ 316 (322)
.++||+...+ ++++|+++|.++||+|+.+.++. ++.+.++|+++||.++||+|+|+ |..|+||.+|++||+++|+
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~--~~~l~ES~aI~~YL~~~~~ 78 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDG--DYKIFESRAIMRYYAEKYR 78 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEEC--CEEEEcHHHHHHHHHHHcC
Confidence 3688986554 68999999999999999988753 45667899999999999999974 6799999999999999997
Q ss_pred C
Q 020689 317 A 317 (322)
Q Consensus 317 ~ 317 (322)
.
T Consensus 79 ~ 79 (215)
T PLN02395 79 S 79 (215)
T ss_pred C
Confidence 5
No 86
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.33 E-value=3.2e-12 Score=99.82 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=53.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 136 QLFEFEACPFCRRVREAITELDLSVELSGCM-----------------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 136 ~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
+||.|..++.|+++|++|+++||+|+.+.++ ++||+|+| +|.+|+||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 6899999999999999999999999987763 59999998 6899999999999999
Q ss_pred Hhc
Q 020689 193 QQY 195 (322)
Q Consensus 193 ~~y 195 (322)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 87
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.32 E-value=3e-12 Score=98.43 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=59.6
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcC--CCCCChHHHHHHcCC-CcccEEEcCCCCcccccHHHHHHHHHh
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGS-KEVPYLIDPNTSTQIGDYKKILSYLFQ 313 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~--~g~~k~~e~~~inp~-~qVP~LvD~n~g~~LfES~aIl~YL~e 313 (322)
+++|...+ .+.++|++|.++|++|+.+.++ .++++.++|++.+|. ++||+|+|+ +|+.++||.||++||++
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 45666555 7999999999999999998774 466667999999999 999999996 58999999999999985
No 88
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.32 E-value=2.6e-12 Score=113.90 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=64.7
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCC--C-CCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGD--G-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~--g-~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~ 316 (322)
|+||....+ ++++|+++|.++||+|+.+.|+. + ..+.++|+++||.++||+|+++ +|+.|+||.+|++||+++|+
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhCc
Confidence 467887765 68999999999999999988754 2 2345789999999999999854 47899999999999999997
Q ss_pred CC
Q 020689 317 AS 318 (322)
Q Consensus 317 ~~ 318 (322)
..
T Consensus 79 ~~ 80 (201)
T PRK10542 79 DR 80 (201)
T ss_pred cc
Confidence 53
No 89
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.4e-12 Score=118.15 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=69.9
Q ss_pred cchhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHc-CCCcccEEEcCCCCcccccHHHHHHHHHhhcC
Q 020689 238 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDIT-GSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 238 ~~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~in-p~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~ 316 (322)
..++||++..|||++|++++|+++||+|+.++.+... +.+.+++.| +.++||+|+++ |..+.||..|++||+++|+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn--~k~i~ESliiveYiDe~w~ 84 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHN--GKPICESLIIVEYIDETWP 84 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEEC--CceehhhHHHHHHHHhhcc
Confidence 5689999999999999999999999999999877643 788899999 58899999984 5579999999999999999
Q ss_pred CC
Q 020689 317 AS 318 (322)
Q Consensus 317 ~~ 318 (322)
.+
T Consensus 85 ~~ 86 (231)
T KOG0406|consen 85 SG 86 (231)
T ss_pred CC
Confidence 63
No 90
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.31 E-value=5e-12 Score=97.86 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=60.8
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHc-----CCCcccEEEcCCCCcccccHHHHHHHHHhh
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDIT-----GSKEVPYLIDPNTSTQIGDYKKILSYLFQS 314 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~in-----p~~qVP~LvD~n~g~~LfES~aIl~YL~e~ 314 (322)
++||.++.++.|+++|++|.++|++|+.+.++.+ ++|.+.+ +.++||+|+| +|..++||.||+.||.++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~----~~~~~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA----EDLEKLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH----HHHHhhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHHH
Confidence 4789999999999999999999999999987642 3444444 4889999997 368999999999999999
Q ss_pred cCC
Q 020689 315 YSA 317 (322)
Q Consensus 315 y~~ 317 (322)
|+.
T Consensus 76 ~~~ 78 (79)
T cd03077 76 YNL 78 (79)
T ss_pred cCC
Confidence 873
No 91
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.30 E-value=4.5e-12 Score=112.78 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=65.4
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 317 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~ 317 (322)
++||++..||++++||++|.++||+|+.+.++.. .+.+++.++||.++||+|+++ +|..|+||.+|++||+++|+.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~-~~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~ 76 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPY-NADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVA 76 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCC-CCchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCC
Confidence 4789999999999999999999999999887642 234567788999999999853 468999999999999999864
No 92
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.30 E-value=4.6e-12 Score=113.01 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=66.9
Q ss_pred hhhcccCChhhHHHHHHHhcCCCceEEEEcCC---CCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCC
Q 020689 241 ELFSYENNPYARIVREALCELELPYILQNVGD---GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 317 (322)
Q Consensus 241 ~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~---g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~ 317 (322)
+||++..||++++||++|.++||+|+.+.++. +.++.+++.++||.++||+|++ +|..|+||.+|++||+++|+.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCCC
Confidence 47888899999999999999999999998864 2445678999999999999998 478999999999999999975
No 93
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.29 E-value=7.4e-12 Score=90.32 Aligned_cols=56 Identities=38% Similarity=0.505 Sum_probs=52.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
++||.++.||+|+++|++|+++|++|+.+.++ +++|+|++ +|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 57999999999999999999999999988876 79999998 5899999999999984
No 94
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.29 E-value=8.3e-12 Score=116.26 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=63.4
Q ss_pred ccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCC
Q 020689 245 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 317 (322)
Q Consensus 245 ~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~ 317 (322)
...||||++|+++|.++||+|+.+.++.. .+.++|+++||.++||+|+| +|..++||.+|++||+++|+.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~-~~~~~fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~ 85 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLK-RKPEDLQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCP 85 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCC-CCCHHHHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCC
Confidence 46799999999999999999999998764 35689999999999999998 478999999999999999975
No 95
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.28 E-value=5.5e-12 Score=98.51 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=59.5
Q ss_pred hhhcccCChhhHHHHHHHhcCCCceEEEEcCCC--CCC-hHHHHHHc-----CCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 241 ELFSYENNPYARIVREALCELELPYILQNVGDG--SSR-TKLLVDIT-----GSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 241 ~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g--~~k-~~e~~~in-----p~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
++|.+..++.|+++|++|.++||+|+.+.++.. ++. .++|.+.+ |+++||+|+|+ |..++||.||+.||.
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~--g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDG--DVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEEC--CEEEeehHHHHHHHh
Confidence 567888889999999999999999999988542 221 34565332 99999999984 689999999999999
Q ss_pred hhc
Q 020689 313 QSY 315 (322)
Q Consensus 313 e~y 315 (322)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 876
No 96
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.27 E-value=1.8e-11 Score=113.93 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=53.1
Q ss_pred cCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCC
Q 020689 140 FEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 198 (322)
Q Consensus 140 ~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~ 198 (322)
...||||+|||++|.++||+|+++.++ |+||||+| +|.+|+||.+|++||+++|+++
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~~ 86 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCPP 86 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCCC
Confidence 457999999999999999999999997 89999998 6899999999999999999764
No 97
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.3e-12 Score=115.00 Aligned_cols=76 Identities=30% Similarity=0.373 Sum_probs=71.0
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEc--CCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNV--GDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V--~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~ 316 (322)
.+++|+...+|.|++|.+++.++|++|+.+.+ ..++++.++|+++||.++||+|+|+ |..++||.||+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~--~~~l~eS~AI~~Yl~~ky~ 79 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDG--GLTLWESHAILRYLAEKYG 79 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecC--CeEEeeHHHHHHHHHHHcC
Confidence 46899999999999999999999999999855 5688999999999999999999996 8999999999999999997
No 98
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.25 E-value=1.6e-11 Score=115.99 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=63.0
Q ss_pred cCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCCCCCCCCh
Q 020689 140 FEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPSTGL 205 (322)
Q Consensus 140 ~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~~~p~~~~ 205 (322)
+..||||+||+++|+|+||+|+++.++ |+||+|++ +|.+|+||.+|++||+++|+++.+ .++
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~~~L--~~~ 145 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKL--DEKWVADSDVITQALEEKYPDPPL--ATP 145 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCCCCC--CCH
Confidence 445999999999999999999998886 99999998 467999999999999999987643 346
Q ss_pred hhHHHHHchhhh
Q 020689 206 LESTLITGWMPT 217 (322)
Q Consensus 206 ~~~a~v~~Wl~~ 217 (322)
.+++.+.+|+..
T Consensus 146 ~era~i~~~l~~ 157 (265)
T PLN02817 146 PEKASVGSKIFS 157 (265)
T ss_pred HHHHHHHHHHHH
Confidence 678888877654
No 99
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.23 E-value=2.5e-11 Score=92.51 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=57.2
Q ss_pred ccCChhhHHHHHHHhcCCCceEEEEcCCCC-CChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 245 YENNPYARIVREALCELELPYILQNVGDGS-SRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 245 ~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~-~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
...||++++++++|.++||+|+.+.++... .+.++|.++||.++||+|+++ |..++||.+|++||.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~--g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDG--GIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEEC--CEEEEcHHHHHHHhC
Confidence 457999999999999999999999886432 346789999999999999984 679999999999984
No 100
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.21 E-value=2.3e-11 Score=91.75 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=51.8
Q ss_pred CChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhh
Q 020689 247 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 314 (322)
Q Consensus 247 ~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~ 314 (322)
.||+|++++++|.++||||+.++++.. .++|.++||+|+++ |..++||.+|++||+++
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~--------~~~p~g~vP~l~~~--g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNP--------WRSPTGKLPFLELN--GEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCc--------ccCCCcccCEEEEC--CEEEcCHHHHHHHHhhC
Confidence 799999999999999999999988642 17899999999984 67899999999999874
No 101
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.20 E-value=3.6e-11 Score=113.59 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=62.8
Q ss_pred ccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCCC
Q 020689 245 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 318 (322)
Q Consensus 245 ~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~ 318 (322)
...||||++|+++|+|+||+|+.+.++.. .+.++|+++||.++||+|+++ |..|+||.+|++||+++|+..
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~-~~~~~fl~iNP~GkVPvL~~d--~~~L~ES~aI~~YL~e~~p~~ 140 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT-NKPEWFLKISPEGKVPVVKLD--EKWVADSDVITQALEEKYPDP 140 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC-cCCHHHHhhCCCCCCCEEEEC--CEEEecHHHHHHHHHHHCCCC
Confidence 44699999999999999999999988764 456789999999999999985 468999999999999999863
No 102
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.18 E-value=1.1e-10 Score=104.93 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=56.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEe------------------e--cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGC------------------M--NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v------------------~--gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
+++||+++.++++++||++|+++|++|+.+.+ + |+||+|+| +|.+|+||.||++||++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~YLa~ 81 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRYLSK 81 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHHHHH
Confidence 49999999999999999999999999988532 2 99999998 67999999999999999
Q ss_pred hcCC
Q 020689 194 QYGK 197 (322)
Q Consensus 194 ~y~~ 197 (322)
+|+.
T Consensus 82 ~~~~ 85 (205)
T PTZ00057 82 KYKI 85 (205)
T ss_pred HcCC
Confidence 9974
No 103
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.14 E-value=2.1e-10 Score=88.16 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=47.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee------------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM------------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~------------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
+++|.+.+ ++.++|++|+++|++|+.+.++ |+||+|+|+ +|..++||.||++||++
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 45555544 8999999999999999999887 799999995 59999999999999985
No 104
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.13 E-value=9e-11 Score=105.48 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=63.2
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHH--------HHcCCCcccEEEcCCCCcccccHHHHHHH
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLV--------DITGSKEVPYLIDPNTSTQIGDYKKILSY 310 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~--------~inp~~qVP~LvD~n~g~~LfES~aIl~Y 310 (322)
+++||.++.++.+++||++|+++|++|+.+.+.. +. ++|+ +.||.++||+|+|+ |..|+||.||++|
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~--~~-~~~~~~~~~~~~~~nP~g~vP~L~~~--~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE--NG-DAFIEFKNFKKEKDTPFEQVPILEMD--NIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc--cc-hHHHHHHhccccCCCCCCCCCEEEEC--CEEEecHHHHHHH
Confidence 3889999999999999999999999999987632 22 2343 47999999999984 6899999999999
Q ss_pred HHhhcCC
Q 020689 311 LFQSYSA 317 (322)
Q Consensus 311 L~e~y~~ 317 (322)
|+++|+.
T Consensus 79 La~~~~~ 85 (205)
T PTZ00057 79 LSKKYKI 85 (205)
T ss_pred HHHHcCC
Confidence 9999975
No 105
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.09 E-value=2.6e-10 Score=86.87 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=46.8
Q ss_pred EcCCCchHHHHHHHHHHcCCceEEEEee----------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 139 EFEACPFCRRVREAITELDLSVELSGCM----------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 139 ~~~~sp~c~rVR~~L~elgl~ye~~~v~----------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
+...||+|++||++|+++||+|+.+.++ ++||+|++ +|.+|+||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 3457999999999999999999998774 99999998 6889999999999984
No 106
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.05 E-value=3.8e-10 Score=87.49 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=48.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------cCCCeEEeCCCCeeecChHHHHHHHHHh
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM--------NRFPFLIDPNTGVSMYESGDIVNYLFQQ 194 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------gqVPvLvd~~~G~~l~ES~aIi~YL~~~ 194 (322)
..|+. .+++|.|++++|+|+||+|+.+... |+||+|++ +|.+|.||.||+.||.++
T Consensus 11 ~~~~~--~~~~~~kv~~~L~elglpye~~~~~~~~~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 11 QILLP--DNASCLAVQTFLKMCNLPFNVRCRANAEFMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred eeecC--CCCCHHHHHHHHHHcCCCcEEEecCCccccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 45543 4678999999999999999987653 99999998 688999999999999864
No 107
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.94 E-value=2.4e-09 Score=82.85 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=64.5
Q ss_pred CCcchhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 236 PSKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 236 pe~~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
...++++|+.+.||+|++++..|.++|++|+.+++.... ...++.++++..+||+++.+ |..+.++.+|++||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~-~~~~~~~~~g~~~vP~i~i~--g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDA-RGRSLRAVTGATTVPQVFIG--GKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCCh-HHHHHHHHHCCCCcCeEEEC--CEEEcCHHHHHHHhC
Confidence 456799999999999999999999999999999997643 34567788899999999974 678999999999984
No 108
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.92 E-value=4.1e-09 Score=81.49 Aligned_cols=59 Identities=22% Similarity=0.411 Sum_probs=54.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 132 PTRLQLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 132 ~~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
.+.++||.-++||+|++++.+|+++|++|+.+.++ .+||++.. +|..|.++.+|++||+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 46799999999999999999999999999999987 79999987 6899999999999984
No 109
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.85 E-value=6.8e-09 Score=78.39 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=61.7
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
++++|+.+.||+|.+++.+|.+++++|+.+++..+. ...++.++.+..+||+++.+ |..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~~~vP~ifi~--g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVTGAMTVPQVFID--GELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHhCCCCcCeEEEC--CEEEeCHHHHHHHhC
Confidence 578999999999999999999999999999997654 34567777899999999874 667899999999984
No 110
>PRK10638 glutaredoxin 3; Provisional
Probab=98.83 E-value=7.5e-09 Score=80.57 Aligned_cols=71 Identities=11% Similarity=0.306 Sum_probs=60.5
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHH
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 311 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL 311 (322)
.+++|+.+.||||++++.+|.++||+|+.+++..+...++++.+++|..+||+++.+ |..+....++.++-
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~--g~~igG~~~~~~~~ 73 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFID--AQHIGGCDDLYALD 73 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEEC--CEEEeCHHHHHHHH
Confidence 588999999999999999999999999999998765567788999999999999874 56666667776653
No 111
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.80 E-value=8e-09 Score=80.08 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=49.1
Q ss_pred cCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhh
Q 020689 246 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 314 (322)
Q Consensus 246 ~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~ 314 (322)
+.+++|.+++++|.++||||+.+.+..+. ..+|.++||+|++ +|..+.||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~-------~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE-------FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc-------ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 46788999999999999999988543211 1467799999998 467999999999999864
No 112
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.79 E-value=2.1e-08 Score=75.73 Aligned_cols=57 Identities=28% Similarity=0.435 Sum_probs=52.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
+++||..++||+|.+++.+|+++|++|+.++++ .+||++.. +|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 689999999999999999999999999999987 57999987 6889999999999984
No 113
>PLN02907 glutamate-tRNA ligase
Probab=98.78 E-value=2.5e-08 Score=106.05 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=71.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee--cCCCeEEeCCCCeeecChHHHHHHHHHhcCCCCCCCCChhhHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM--NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPSTGLLESTLIT 212 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~~~p~~~~~~~a~v~ 212 (322)
++||..+.++ +.++.++|+++|++|+.+... |+||+|+++ +|..|+||.||++||+++|+...+.+.++.+++.+.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~~~L~p~d~~erAqV~ 80 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDPSLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASLPGFYGQDAFESSQVD 80 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEeecCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCCcCCCCCCHHHHHHHH
Confidence 7899888764 678999999999999997644 999999964 688999999999999999987666667888899999
Q ss_pred chhhhHh
Q 020689 213 GWMPTIF 219 (322)
Q Consensus 213 ~Wl~~~~ 219 (322)
+|+.+..
T Consensus 81 qWL~~~~ 87 (722)
T PLN02907 81 EWLDYAP 87 (722)
T ss_pred HHHHHHh
Confidence 9988764
No 114
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.1e-08 Score=91.46 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=64.8
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 317 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~ 317 (322)
|+||-|..||||.++|++.-.++||++.+-+..+.+. .-.++-|.+|||+|+- ++|..|.||.+|+.|+++.++.
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG~KqVPiL~K-edg~~m~ESlDIV~y~d~~~~~ 75 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIGQKQVPILQK-EDGRAMPESLDIVHYVDELDGK 75 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCccc--ChhhhhcccccceEEc-cccccchhhhHHHHHHHHhcCc
Confidence 5789999999999999999999999998876554332 3467889999999985 4789999999999999999985
No 115
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.74 E-value=2.1e-08 Score=78.61 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=61.9
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhc
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 315 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y 315 (322)
++++|+.+.||+|.+++.+|.++||+|+.+++..+....+++ ...|..+||+++.++.-+..|+...|-+..-...
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~-~~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~~~~~ 77 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETL-RAQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPH 77 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHH-HHcCCCCcCEEEECCEEEecCCHHHHHHHHHhhh
Confidence 578999999999999999999999999999998654333334 4468899999998766677899888887765543
No 116
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.73 E-value=2.1e-08 Score=95.10 Aligned_cols=56 Identities=30% Similarity=0.618 Sum_probs=52.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee------------cCCCeEEeCCCCeeecChHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM------------NRFPFLIDPNTGVSMYESGDIVNYL 191 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~------------gqVPvLvd~~~G~~l~ES~aIi~YL 191 (322)
.++||.|+.||||-|||.+|...||+|++++|+ .+||+|+. .|.+|.||.+||.-|
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~--~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLI--RGEQMVDSSVIISLL 157 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEe--ccceechhHHHHHHH
Confidence 689999999999999999999999999999998 99999986 477899999999876
No 117
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.72 E-value=1.9e-08 Score=74.10 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=61.0
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHH
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 311 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL 311 (322)
|+++|....||+|++++..|.+.+++|..+++..+.+..+++.+.++...||++++++.-+..++..+|-+||
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 4789999999999999999999999999999987655567788999999999999853222237888888876
No 118
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=98.66 E-value=1.4e-08 Score=95.41 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=70.8
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEc--CCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNV--GDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V--~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~ 316 (322)
.+.||..+.|=.+++||.++.|+||+|+.+.| ..|++..++|+++||.+.||||+++ .-.|.|+..|++|++++|-
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g--~~II~d~tqIIdYvErtf~ 103 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHG--DNIISDYTQIIDYVERTFT 103 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecC--CeecccHHHHHHHHHHhhc
Confidence 38899999888899999999999999998877 5688999999999999999999985 4689999999999999987
Q ss_pred CCC
Q 020689 317 ASP 319 (322)
Q Consensus 317 ~~~ 319 (322)
..+
T Consensus 104 ger 106 (325)
T KOG4420|consen 104 GER 106 (325)
T ss_pred ccc
Confidence 654
No 119
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.65 E-value=3.8e-08 Score=72.39 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=57.1
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 309 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~ 309 (322)
+++|+...||+|.+++.+|.+++++|..++++.+....+++.++++..+||+|++++.-+..++...|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCHHHHHh
Confidence 6789999999999999999999999999999776555677888999999999998654444555554443
No 120
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.64 E-value=2.4e-08 Score=75.72 Aligned_cols=58 Identities=28% Similarity=0.281 Sum_probs=52.8
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPN 296 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n 296 (322)
.+++|+.+.||+|++++..|+++||+|+.+++..+...++++.+++|..+||++..++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~ 59 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNE 59 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECC
Confidence 4789999999999999999999999999999987777788999999999999998753
No 121
>PRK10638 glutaredoxin 3; Provisional
Probab=98.58 E-value=2e-07 Score=72.51 Aligned_cols=58 Identities=14% Similarity=0.311 Sum_probs=52.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
.++||..++||+|+++|.+|+++|++|+.++++ .+||+|+. +|..+....++.++-.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDAR 75 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHHc
Confidence 589999999999999999999999999999996 68999987 68899999888877543
No 122
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.58 E-value=1.1e-07 Score=69.47 Aligned_cols=69 Identities=19% Similarity=0.339 Sum_probs=59.7
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSY 310 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~Y 310 (322)
+++|+...||+|++++.+|.+++++|+.+++..+....+++.+++|..++|++..+ |..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~--~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFIN--GEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEEC--CEEEecHHHHHHh
Confidence 67899999999999999999999999999998766566788889999999999874 6678888877753
No 123
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.57 E-value=2.1e-07 Score=71.45 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=46.4
Q ss_pred CCchHHHHHHHHHHcCCceEEEEee-------cCCCeEEeCCCCeeecChHHHHHHHHHh
Q 020689 142 ACPFCRRVREAITELDLSVELSGCM-------NRFPFLIDPNTGVSMYESGDIVNYLFQQ 194 (322)
Q Consensus 142 ~sp~c~rVR~~L~elgl~ye~~~v~-------gqVPvLvd~~~G~~l~ES~aIi~YL~~~ 194 (322)
.+|+|.++.+.|...|++|+++... |++|+|++ +|..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 4799999999999999999987654 99999998 689999999999999874
No 124
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.56 E-value=1.1e-07 Score=71.97 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=54.4
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCC-CcccccHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNT-STQIGDYKKILS 309 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~-g~~LfES~aIl~ 309 (322)
+++|+.+.||+|++++..|.++||+|+.+++..+....+++ +..|..+||+++.+++ -+..|+...|-+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~-~~~g~~~vP~v~~~g~~~~~G~~~~~~~~ 70 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYV-KAQGFRQVPVIVADGDLSWSGFRPDKLKA 70 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHH-HHcCCcccCEEEECCCcEEeccCHHHHHh
Confidence 46899999999999999999999999999998654444444 4468889999998432 466777777653
No 125
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=98.56 E-value=6.4e-08 Score=90.94 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=61.8
Q ss_pred CCCCCCceEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHH
Q 020689 128 NSDSPTRLQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNY 190 (322)
Q Consensus 128 ~~~p~~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~Y 190 (322)
.+.++..++||+++.|-.++|||+++.|+||+|+.+.|+ |.||||++ +..+|.|+.-||+|
T Consensus 20 a~~~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~--g~~II~d~tqIIdY 97 (325)
T KOG4420|consen 20 AHWPRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIH--GDNIISDYTQIIDY 97 (325)
T ss_pred CCCchhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEec--CCeecccHHHHHHH
Confidence 345666799999999989999999999999999999987 99999997 56799999999999
Q ss_pred HHHhcCCC
Q 020689 191 LFQQYGKG 198 (322)
Q Consensus 191 L~~~y~~~ 198 (322)
++++|-+.
T Consensus 98 vErtf~ge 105 (325)
T KOG4420|consen 98 VERTFTGE 105 (325)
T ss_pred HHHhhccc
Confidence 99999544
No 126
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.53 E-value=2.4e-07 Score=72.26 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=64.6
Q ss_pred chhhhcccCChhhHHHHHHHhc-----CCCceEEEEcCCCCCChHHHHHHcCC--CcccEEEcCCCCcccccHHHHHHHH
Q 020689 239 KLELFSYENNPYARIVREALCE-----LELPYILQNVGDGSSRTKLLVDITGS--KEVPYLIDPNTSTQIGDYKKILSYL 311 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~E-----lgLpYe~~~V~~g~~k~~e~~~inp~--~qVP~LvD~n~g~~LfES~aIl~YL 311 (322)
.+++|+.+.||+|.+++..|.+ .+++|+.+++.......+++.++.+. ..||++..+ |..+....+|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~--g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVD--QKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEEC--CEEEcCHHHHHHHH
Confidence 5789999999999999999999 79999999997644445677777765 689999873 67889999999999
Q ss_pred HhhcC
Q 020689 312 FQSYS 316 (322)
Q Consensus 312 ~e~y~ 316 (322)
.++|+
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 99886
No 127
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.52 E-value=2.2e-07 Score=69.67 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=59.1
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHc-CCCcccEEEcCCCCccc--ccHHHHHHHHHh
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDIT-GSKEVPYLIDPNTSTQI--GDYKKILSYLFQ 313 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~in-p~~qVP~LvD~n~g~~L--fES~aIl~YL~e 313 (322)
+++|....||+|++++..|.+++++|+.+++..+....+++.+++ +...||+++.+ +|..+ .+...|.++|.+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~~ 77 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQE 77 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhhC
Confidence 678999999999999999999999999999987665566777887 88999999754 34444 446778887753
No 128
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.51 E-value=2.1e-07 Score=70.04 Aligned_cols=71 Identities=17% Similarity=0.314 Sum_probs=58.5
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCC-cccEEEcCCCCcccccHHHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSK-EVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~-qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
+++|+.+.||+|.+++..|.+++|+|+.+++.......+++.+..+.. +||+++.+ |..+....++.++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~--g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG--DVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC--CEEEeChHHHHHHHh
Confidence 678999999999999999999999999999976544556777777766 99999874 567777777777643
No 129
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.47 E-value=6.2e-07 Score=65.87 Aligned_cols=56 Identities=14% Similarity=0.392 Sum_probs=49.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeee--cChHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSM--YESGDIVNYL 191 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l--~ES~aIi~YL 191 (322)
+++||+.++||+|++++.+|+++|++|+.+.++ ..||+|++ +|..+ +++.+|-+||
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~--~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI--GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE--CCEEEeeCCHHHHHHHh
Confidence 589999999999999999999999999999886 68999998 47777 7777877776
No 130
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.47 E-value=4.2e-07 Score=71.56 Aligned_cols=77 Identities=12% Similarity=0.258 Sum_probs=63.1
Q ss_pred hhhhcccCChhhHHHHHHHhcC-----CCceEEEEcCCCCCChHHHHHHcCC--CcccEEEcCCCCcccccHHHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCEL-----ELPYILQNVGDGSSRTKLLVDITGS--KEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~El-----gLpYe~~~V~~g~~k~~e~~~inp~--~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
+++|+.+.||||.+++..|.++ +++|+.+++......++++.++.+. ..||++..+ |..+..+.+|.+|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~--g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVD--EKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEEC--CEEecCHHHHHHHHH
Confidence 4689999999999999999998 4679998886433335667777775 799999874 678999999999999
Q ss_pred hhcCCC
Q 020689 313 QSYSAS 318 (322)
Q Consensus 313 e~y~~~ 318 (322)
++|+-.
T Consensus 80 ~~~~~~ 85 (86)
T TIGR02183 80 ENFDIE 85 (86)
T ss_pred hccccc
Confidence 988743
No 131
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.2e-06 Score=80.31 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=65.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCCC
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKGR 199 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~~ 199 (322)
.++|++|.....+.-+|+++...|++||.+.+. ||+|+|.. ||..|.+|.||++||+++||=.
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~gl~- 79 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKFGLA- 79 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHhCcC-
Confidence 589999999999999999999999999987765 99999976 5999999999999999999832
Q ss_pred CCCCChhhHHHHHchhhhHhhh
Q 020689 200 SPSTGLLESTLITGWMPTIFRA 221 (322)
Q Consensus 200 ~p~~~~~~~a~v~~Wl~~~~~~ 221 (322)
..++.+.+ |++.+...
T Consensus 80 --Gkt~~E~a----~vD~i~d~ 95 (206)
T KOG1695|consen 80 --GKTEEEEA----WVDMIVDQ 95 (206)
T ss_pred --CCCHHHHH----HHHHHHHh
Confidence 33455554 44444443
No 132
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.41 E-value=5e-07 Score=69.13 Aligned_cols=71 Identities=11% Similarity=0.255 Sum_probs=58.4
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
+++|+.+.||+|.+++..|.++|++|+.+++......++++.++++...||+++.+ |..+....++.++-+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~--g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIG--DVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEEC--CEEEcChHHHHHHHH
Confidence 46899999999999999999999999999998766667788888999999999875 455566666655443
No 133
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.1e-07 Score=70.63 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=48.4
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCC-ChHHHHH-HcCCCcccEEEcCC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSS-RTKLLVD-ITGSKEVPYLIDPN 296 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~-k~~e~~~-inp~~qVP~LvD~n 296 (322)
.+++|+.+.||||.+++.+|.++|++|+.+++..+++ .+.++.+ .+|..+||+++.++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 4788999999999999999999999999999987663 3444544 55899999999864
No 134
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.37 E-value=5.5e-07 Score=85.56 Aligned_cols=69 Identities=28% Similarity=0.351 Sum_probs=57.8
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
.++||.|+.||||.+||.+|+..||+|.++.|+.- .+.+ ++.+...+||+|... |.+|.||..|+.-|+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV--~r~e-Ik~SsykKVPil~~~--Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV--LRQE-IKWSSYKKVPILLIR--GEQMVDSSVIISLLA 158 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecch--hhhh-ccccccccccEEEec--cceechhHHHHHHHH
Confidence 58899999999999999999999999999998652 2332 355778899999873 678999999998663
No 135
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.35 E-value=2e-06 Score=62.69 Aligned_cols=55 Identities=18% Similarity=0.445 Sum_probs=49.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNY 190 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~Y 190 (322)
++++|..++||+|++++.+|.+++++|+.+.+. .++|++.. +|..+.++.+|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 478999999999999999999999999998886 58999987 68899999888763
No 136
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.32 E-value=2.6e-06 Score=67.03 Aligned_cols=60 Identities=13% Similarity=0.336 Sum_probs=52.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHcC-----CceEEEEee-------------c----CCCeEEeCCCCeeecChHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELD-----LSVELSGCM-------------N----RFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elg-----l~ye~~~v~-------------g----qVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
+++|+.++||+|.+++.+|++++ ++|+.+.+. + .||++.. +|..|.++.+|.+|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHHH
Confidence 68999999999999999999994 678877774 3 8999976 6899999999999999
Q ss_pred HhcC
Q 020689 193 QQYG 196 (322)
Q Consensus 193 ~~y~ 196 (322)
++|+
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8765
No 137
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.32 E-value=2.5e-06 Score=64.14 Aligned_cols=56 Identities=14% Similarity=0.310 Sum_probs=50.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------c-CCCeEEeCCCCeeecChHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM---------------N-RFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------g-qVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
++||..+.||+|.+++.+|+++||+|+.+.++ . +||+++. +|..+.+..++.++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 78999999999999999999999999999987 2 8999987 6889999999888754
No 138
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.30 E-value=2.7e-06 Score=64.39 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=45.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIV 188 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi 188 (322)
.++||+.++||+|++++.+|+++||+|+.+.+. .+||++.. +|..+..-.++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~ 69 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVGGLTDLK 69 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHH
Confidence 489999999999999999999999999999986 78999987 577776655544
No 139
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.28 E-value=4.4e-06 Score=65.11 Aligned_cols=61 Identities=18% Similarity=0.355 Sum_probs=55.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHH-----cCCceEEEEee-------------c----CCCeEEeCCCCeeecChHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITE-----LDLSVELSGCM-------------N----RFPFLIDPNTGVSMYESGDIVNYL 191 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~e-----lgl~ye~~~v~-------------g----qVPvLvd~~~G~~l~ES~aIi~YL 191 (322)
.+++|..++||+|.+++-+|++ .|++|+.+.+. + +||++.. +|..+.+..+|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHHHH
Confidence 4899999999999999999999 79999998886 3 7999986 689999999999999
Q ss_pred HHhcC
Q 020689 192 FQQYG 196 (322)
Q Consensus 192 ~~~y~ 196 (322)
.+.|+
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 99876
No 140
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.25 E-value=7.5e-07 Score=64.92 Aligned_cols=56 Identities=21% Similarity=0.413 Sum_probs=50.0
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 295 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~ 295 (322)
+++|+.+.||+|.+++..|+++|++|+.+++...+..++++.+..+..++|++..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~ 56 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFID 56 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEET
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEEC
Confidence 46899999999999999999999999999998766667788888899999999874
No 141
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.21 E-value=3.7e-06 Score=65.81 Aligned_cols=42 Identities=17% Similarity=0.456 Sum_probs=38.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeC
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDP 175 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~ 175 (322)
.++||..++||+|.++|.+|+++||+|+.++++ .+||+++.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~ 57 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAG 57 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEEC
Confidence 589999999999999999999999999999987 689999873
No 142
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.18 E-value=5e-06 Score=62.24 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=46.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee----------------cCCCeEEeCCCCeeec--ChHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM----------------NRFPFLIDPNTGVSMY--ESGDIVNYLF 192 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~----------------gqVPvLvd~~~G~~l~--ES~aIi~YL~ 192 (322)
++||+.++||+|++++..|+++|++|+.+.++ ..||+++.+ +|..+. ++..|.++|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhh
Confidence 78999999999999999999999999998886 589999754 566554 4556666664
No 143
>PHA03050 glutaredoxin; Provisional
Probab=98.17 E-value=3.2e-06 Score=69.90 Aligned_cols=72 Identities=22% Similarity=0.421 Sum_probs=55.9
Q ss_pred CCcchhhhcccCChhhHHHHHHHhcCCC---ceEEEEcCCCC---CChHHHHHHcCCCcccEEEcCCCCcccccHHHHHH
Q 020689 236 PSKKLELFSYENNPYARIVREALCELEL---PYILQNVGDGS---SRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 309 (322)
Q Consensus 236 pe~~i~LY~~~~SPf~rrVR~aL~ElgL---pYe~~~V~~g~---~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~ 309 (322)
....+++|+.+.||||.+++.+|+++++ +|+.++++... ..++++.++++..+||.++.+ |..+....++.+
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~--g~~iGG~ddl~~ 88 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFG--KTSIGGYSDLLE 88 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEEC--CEEEeChHHHHH
Confidence 3456899999999999999999999999 89999997632 236778889999999999875 333444444433
No 144
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.17 E-value=6.5e-06 Score=62.72 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=59.7
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCC---hHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHh
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSR---TKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 313 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k---~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e 313 (322)
+++|+...||+|.+++..|.+++++|+.+++...... +.++.++++..++|++..+ |..+.....|+++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~--g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIG--GKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEEC--CEEEcCHHHHHHHHHc
Confidence 6789999999999999999999999999988765432 3456678888899999874 6678899999888765
No 145
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=3.1e-06 Score=77.69 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=63.7
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 317 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~ 317 (322)
.++|+.+.....+..+|+.+...|++|+.+.+..+.. ..++....|.+|||+|.. +|..+.+|.||++||+++|+-
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~gl 78 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKFGL 78 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHhCc
Confidence 4577888888899999999999999999999876532 334444589999999987 389999999999999999983
No 146
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.16 E-value=4e-06 Score=67.77 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCcchhhhcc-----cCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHH
Q 020689 236 PSKKLELFSY-----ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 309 (322)
Q Consensus 236 pe~~i~LY~~-----~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~ 309 (322)
.++++.+|.. +.||||.+++..|.++|++|+.+++..++..++++.++++..+||.+..+ |..+....++.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~--g~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK--GEFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC--CEEEeChHHHHH
Confidence 3456778865 78999999999999999999999997665556777888999999999875 444444444444
No 147
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.13 E-value=7.2e-06 Score=60.10 Aligned_cols=47 Identities=13% Similarity=0.390 Sum_probs=40.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeec
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMY 182 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ 182 (322)
.+++|+..+||+|++++++|.++|++|..+.++ ++||+|++ +|..|.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~~i~ 62 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDEHLS 62 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCEEEe
Confidence 378999999999999999999999999999886 68999998 455443
No 148
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.13 E-value=1.4e-05 Score=60.88 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=52.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee------------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM------------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~------------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
++++|+-++||+|.+++.+|++++++|+.+.++ .++|++.. +|..+.+..+|+++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 378999999999999999999999999998887 47999987 68899999999998865
No 149
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.12 E-value=8.4e-06 Score=62.59 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=48.7
Q ss_pred CChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhh
Q 020689 247 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 314 (322)
Q Consensus 247 ~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~ 314 (322)
.+|+|.++.+.|+..++||+.+.... . ..+|.+++|+|+++ |..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n--~------~~sp~gkLP~l~~~--~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN--P------WRSPTGKLPALLTS--GTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC--C------CCCCCCccCEEEEC--CEEecChHHHHHHHHHc
Confidence 57999999999999999999774322 1 34689999999984 78999999999999875
No 150
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.12 E-value=1.1e-05 Score=61.62 Aligned_cols=57 Identities=12% Similarity=0.280 Sum_probs=50.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
+++|..++||+|.+++.+|+++|++|+.+.++ ..||+++. +|..+....++.++-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999987 57999987 68888888888777654
No 151
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.11 E-value=6.1e-06 Score=65.48 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCcchhhhcc-----cCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHH
Q 020689 236 PSKKLELFSY-----ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSY 310 (322)
Q Consensus 236 pe~~i~LY~~-----~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~Y 310 (322)
.+.++.+|.. +.||||.+++..|.+++++|+.+++..+...++++.++++..+||++..+ |..+.....+.++
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~--g~~iGG~~~l~~l 83 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVN--GELVGGCDIVKEM 83 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEEC--CEEEeCHHHHHHH
Confidence 3456778865 58999999999999999999999997766567788889999999999874 5566666666664
Q ss_pred H
Q 020689 311 L 311 (322)
Q Consensus 311 L 311 (322)
.
T Consensus 84 ~ 84 (90)
T cd03028 84 H 84 (90)
T ss_pred H
Confidence 3
No 152
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.10 E-value=8.8e-06 Score=65.99 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=50.2
Q ss_pred CCcchhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCC---hHHHHHHcCCCcccEEEcC
Q 020689 236 PSKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSR---TKLLVDITGSKEVPYLIDP 295 (322)
Q Consensus 236 pe~~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k---~~e~~~inp~~qVP~LvD~ 295 (322)
.+.++++|+.+.||||.+++.+|.+++++|+.++++..... ++++.++++..+||++..+
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~ 68 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVG 68 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEEC
Confidence 45678999999999999999999999999999999865442 2345667889999999875
No 153
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.5e-05 Score=62.24 Aligned_cols=58 Identities=14% Similarity=0.327 Sum_probs=48.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
++++|..++||||.+++.+|+++|++|+.+.++ .+||+++. +|..+....++-++...
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeCcccHHHHHhh
Confidence 589999999999999999999999999998887 78999987 56666665555555443
No 154
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.08 E-value=7.6e-06 Score=61.89 Aligned_cols=40 Identities=15% Similarity=0.435 Sum_probs=37.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEe
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM--------------NRFPFLID 174 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd 174 (322)
++||+.+.||+|++++.+|+++|++|+.+.++ .+||+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 58999999999999999999999999999987 48999987
No 155
>PTZ00062 glutaredoxin; Provisional
Probab=98.05 E-value=7.9e-05 Score=68.32 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=97.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCc---eEEEEee-----cCCCeEEeCCCCeee-----cChHHHHHHHHHhcCCCCCC
Q 020689 135 LQLFEFEACPFCRRVREAITELDLS---VELSGCM-----NRFPFLIDPNTGVSM-----YESGDIVNYLFQQYGKGRSP 201 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~---ye~~~v~-----gqVPvLvd~~~G~~l-----~ES~aIi~YL~~~y~~~~~p 201 (322)
+-.+.-+|||-|+.+..+|.++--+ +....|+ ..||+++-=.+|..+ ++...+..++...++...
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~~~~~~~~-- 98 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLADANNEYGVFEFYQNSQLINSLEGCNTSTLVSFIRGWAQKGS-- 98 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccccCcccceEEEEEECCEEEeeeeCCCHHHHHHHHHHHcCCCC--
Confidence 4444467899999999888887433 3344444 889977532255422 345677777766555321
Q ss_pred CCChhhHHHHHchhhhHhhhcCCccccccCCCCCCCcchhhhcc-----cCChhhHHHHHHHhcCCCceEEEEcCCCCCC
Q 020689 202 STGLLESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSY-----ENNPYARIVREALCELELPYILQNVGDGSSR 276 (322)
Q Consensus 202 ~~~~~~~a~v~~Wl~~~~~~~~g~~~~~~~~~~~pe~~i~LY~~-----~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k 276 (322)
. ..+..++..+. ...++.+|.. +.||||+++...|++++++|+.+++..++..
T Consensus 99 ----~--~~~~~~v~~li----------------~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~ 156 (204)
T PTZ00062 99 ----S--EDTVEKIERLI----------------RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDL 156 (204)
T ss_pred ----H--HHHHHHHHHHH----------------hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHH
Confidence 0 12222322221 1234555654 5899999999999999999999999877666
Q ss_pred hHHHHHHcCCCcccEEEcCCCCcccccHHHHHH
Q 020689 277 TKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 309 (322)
Q Consensus 277 ~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~ 309 (322)
++++.++++..+||.+..+ |..+.....+.+
T Consensus 157 ~~~l~~~sg~~TvPqVfI~--G~~IGG~d~l~~ 187 (204)
T PTZ00062 157 REELKVYSNWPTYPQLYVN--GELIGGHDIIKE 187 (204)
T ss_pred HHHHHHHhCCCCCCeEEEC--CEEEcChHHHHH
Confidence 7788889999999999874 444444444443
No 156
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.03 E-value=1.7e-05 Score=72.68 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=63.7
Q ss_pred ccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCCCCCC
Q 020689 245 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSASPSP 321 (322)
Q Consensus 245 ~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~~~~ 321 (322)
...||||+++.+.|.+++++|.+..|+- ..+.++|+++.|.+++|+|..+ +....||..|-++|+++|+....|
T Consensus 18 ~Gdcpf~qr~~m~L~~k~~~f~vttVd~-~~kp~~f~~~sp~~~~P~l~~d--~~~~tDs~~Ie~~Lee~l~~p~~~ 91 (221)
T KOG1422|consen 18 LGDCPFCQRLFMTLELKGVPFKVTTVDL-SRKPEWFLDISPGGKPPVLKFD--EKWVTDSDKIEEFLEEKLPPPKLP 91 (221)
T ss_pred CCCChhHHHHHHHHHHcCCCceEEEeec-CCCcHHHHhhCCCCCCCeEEeC--CceeccHHHHHHHHHHhcCCCCCc
Confidence 3579999999999999999999988864 2356677899999999999984 567899999999999999987654
No 157
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.98 E-value=2.7e-05 Score=71.36 Aligned_cols=60 Identities=18% Similarity=0.344 Sum_probs=55.1
Q ss_pred CCCchHHHHHHHHHHcCCceEEEEee--------------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCCCCCC
Q 020689 141 EACPFCRRVREAITELDLSVELSGCM--------------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPS 202 (322)
Q Consensus 141 ~~sp~c~rVR~~L~elgl~ye~~~v~--------------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~~~p~ 202 (322)
..||||+++-+.|.++|++|.+..|+ +++|+|.. +|.+..||..|.++|+++|+++..+.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~~p~~~~ 92 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLPPPKLPT 92 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcCCCCCcc
Confidence 46999999999999999999999998 99999998 68899999999999999999876543
No 158
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.96 E-value=3.7e-05 Score=62.35 Aligned_cols=57 Identities=12% Similarity=0.239 Sum_probs=50.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCCceEEEEee------------------cCCCeEEeCCCCeeecChHHHHHHH
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDLSVELSGCM------------------NRFPFLIDPNTGVSMYESGDIVNYL 191 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~------------------gqVPvLvd~~~G~~l~ES~aIi~YL 191 (322)
+++++|.-++||||.+++.+|.++|++|+.+.++ .+||++.. +|..+....++.+..
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMALH 82 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHHH
Confidence 6799999999999999999999999999999987 58999976 678888887777643
No 159
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.94 E-value=2.7e-05 Score=56.65 Aligned_cols=44 Identities=18% Similarity=0.446 Sum_probs=39.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCee
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVS 180 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~ 180 (322)
+++|+.++||+|.+++..|+++|++|+.+.++ .++|++.. +|..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 57999999999999999999999999999987 78999976 4654
No 160
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=97.93 E-value=3.4e-05 Score=72.91 Aligned_cols=65 Identities=23% Similarity=0.484 Sum_probs=59.2
Q ss_pred CceEEEEcC-------CCchHHHHHHHHHHcCCceEEEEee-------cCCCeEEeCCCCeeecChHHHHHHHHHhcCCC
Q 020689 133 TRLQLFEFE-------ACPFCRRVREAITELDLSVELSGCM-------NRFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 198 (322)
Q Consensus 133 ~~l~LY~~~-------~sp~c~rVR~~L~elgl~ye~~~v~-------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~ 198 (322)
..+-||.|+ .||||.||-..|...+|+||.+.+. |++|+++- +|..+.+|.-|+.+|.++|+-.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~~rSr~G~lPFIEL--NGe~iaDS~~I~~~L~~hf~~~ 121 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLKRRSRNGTLPFIEL--NGEHIADSDLIEDRLRKHFKIP 121 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccceeeccCCCcceEEe--CCeeccccHHHHHHHHHHcCCC
Confidence 457899987 4899999999999999999999987 99999998 6999999999999999999865
Q ss_pred C
Q 020689 199 R 199 (322)
Q Consensus 199 ~ 199 (322)
.
T Consensus 122 ~ 122 (281)
T KOG4244|consen 122 D 122 (281)
T ss_pred C
Confidence 4
No 161
>PHA03050 glutaredoxin; Provisional
Probab=97.93 E-value=3.8e-05 Score=63.48 Aligned_cols=55 Identities=18% Similarity=0.431 Sum_probs=48.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCC---ceEEEEee------------------cCCCeEEeCCCCeeecChHHHHH
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDL---SVELSGCM------------------NRFPFLIDPNTGVSMYESGDIVN 189 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl---~ye~~~v~------------------gqVPvLvd~~~G~~l~ES~aIi~ 189 (322)
+.+++|..++||||.+++-+|+++|+ +|+.++++ .+||+++. +|..|....++.+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHH
Confidence 57999999999999999999999999 88888876 58999987 6888888877776
No 162
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.86 E-value=5.6e-05 Score=57.52 Aligned_cols=72 Identities=25% Similarity=0.417 Sum_probs=57.3
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCc--eEEEEcCCCCCC---hHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHh
Q 020689 240 LELFSYENNPYARIVREALCELELP--YILQNVGDGSSR---TKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 313 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLp--Ye~~~V~~g~~k---~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e 313 (322)
+++|..+.||+|.+++.+|.+++++ |+.++++..... ++.+.+..+..++|.+..+ |..+..+..++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~--g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFIN--GKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEEC--CEEEcCHHHHHHHHHc
Confidence 3578889999999999999999999 998888764332 2346667888899999874 6678888888887654
No 163
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.85 E-value=7.4e-05 Score=56.86 Aligned_cols=57 Identities=18% Similarity=0.427 Sum_probs=49.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCc--eEEEEee------------------cCCCeEEeCCCCeeecChHHHHHHHHH
Q 020689 135 LQLFEFEACPFCRRVREAITELDLS--VELSGCM------------------NRFPFLIDPNTGVSMYESGDIVNYLFQ 193 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~--ye~~~v~------------------gqVPvLvd~~~G~~l~ES~aIi~YL~~ 193 (322)
+++|.-++||+|.+++-+|++++++ |+.+.++ .+||++.. +|..+.++.+++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888876 47999976 68889999998888764
No 164
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.85 E-value=7.9e-05 Score=60.20 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=49.2
Q ss_pred CceEEEEc-----CCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 133 TRLQLFEF-----EACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 133 ~~l~LY~~-----~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
+++.+|.. ++||||.+++.+|.++|++|+.+.+. .+||.+.. +|..+....++.+...
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIMEMYQ 89 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHHHHH
Confidence 57999965 89999999999999999999999885 68999987 6788888777776443
No 165
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.76 E-value=0.00014 Score=57.60 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=49.7
Q ss_pred CceEEEEc-----CCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 133 TRLQLFEF-----EACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 133 ~~l~LY~~-----~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
+++.+|.. ++||||.+++.+|+++|++|+.+.+. .+||++.. +|..|....++.+...
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKEMHE 85 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHHHHH
Confidence 57899976 69999999999999999999999986 68999976 6888888888877543
No 166
>PLN02907 glutamate-tRNA ligase
Probab=97.56 E-value=0.00011 Score=78.70 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=52.7
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCCC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 318 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~ 318 (322)
++||..+.++ +.++.++|.++|++|+.+. .+|.++||+|+++ +|..|+||.+|++||++.|+..
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~-------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP-------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee-------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCCc
Confidence 5688777765 4568999999999999764 1589999999964 4789999999999999998643
No 167
>PRK10824 glutaredoxin-4; Provisional
Probab=97.45 E-value=0.00025 Score=59.48 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=53.9
Q ss_pred Ccchhhhcc-----cCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHH
Q 020689 237 SKKLELFSY-----ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 309 (322)
Q Consensus 237 e~~i~LY~~-----~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~ 309 (322)
+.++.+|.. +.||||.++..+|..++++|..+++..+..-+.++.++++..+||.+..+ |.-+.....+.+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~--G~~IGG~ddl~~ 89 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVD--GELVGGCDIVIE 89 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEEC--CEEEcChHHHHH
Confidence 345666665 48999999999999999999999997665556778889999999988764 444444444444
No 168
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.31 E-value=0.00058 Score=58.16 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=32.4
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGS 274 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~ 274 (322)
|+++|+.+.||+|++++..|.+.||+|+.+++..+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~ 36 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSP 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCCh
Confidence 478999999999999999999999999999985443
No 169
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.30 E-value=0.00029 Score=70.73 Aligned_cols=65 Identities=12% Similarity=0.262 Sum_probs=49.4
Q ss_pred cchhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHH-H--------HcCCCcccEEEcCCCCccccc
Q 020689 238 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLV-D--------ITGSKEVPYLIDPNTSTQIGD 303 (322)
Q Consensus 238 ~~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~-~--------inp~~qVP~LvD~n~g~~LfE 303 (322)
+.+++|+.+.||+|.+++..|.+.||+|+.++++++... .++. + .+|...||+++.++.-+..|+
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~-~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~ 75 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKR-AEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYD 75 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhH-HHHHHHHhhccccccCCCCccCeEEECCEEEeCch
Confidence 358899999999999999999999999999999865432 2332 2 247779999988644344444
No 170
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.20 E-value=0.0007 Score=59.10 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=47.2
Q ss_pred hhhhccc------CChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCC----CcccEEEcC
Q 020689 240 LELFSYE------NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGS----KEVPYLIDP 295 (322)
Q Consensus 240 i~LY~~~------~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~----~qVP~LvD~ 295 (322)
+++|... .+|+|.+|+.+|..++|+|+.++|..+...++++.++.+. ..||.+..+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~ 67 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVD 67 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEEC
Confidence 5677777 7999999999999999999999998766667788887665 799988874
No 171
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.17 E-value=0.00037 Score=57.53 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=38.9
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGS 286 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~ 286 (322)
+++|+.+.||+|++++..|++.|++|+.+++......++++.++-..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 47899999999999999999999999999997766566666554443
No 172
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.02 E-value=0.0019 Score=55.14 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=31.8
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDG 273 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g 273 (322)
|+++|+.+.|+.|++++..|.+.|++|+.+++...
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 47899999999999999999999999999998543
No 173
>PRK10824 glutaredoxin-4; Provisional
Probab=96.94 E-value=0.0043 Score=52.05 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=48.5
Q ss_pred CceEEEEc-----CCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 133 TRLQLFEF-----EACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 133 ~~l~LY~~-----~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
+++.+|.- +.||||.++..+|..+|++|..+.++ .+||-+.. +|..+....++.+...
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIEMYQ 92 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHHHH
Confidence 57888876 48999999999999999999998886 68999865 6888888877777543
No 174
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.86 E-value=0.0015 Score=52.97 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=39.2
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGS 286 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~ 286 (322)
+++|+.+.||+|++++..|.+.|++|+.+++.......+++.++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 46899999999999999999999999999997655556666666543
No 175
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.84 E-value=0.0014 Score=54.27 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=32.6
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGS 274 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~ 274 (322)
|+++|+.+.|++|++++..|++.|++|+.+++....
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 478999999999999999999999999999986544
No 176
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.83 E-value=0.0033 Score=53.73 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=32.3
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGS 274 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~ 274 (322)
|+++|+.+.|+.|++++..|.+.||+|+.+++....
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 478999999999999999999999999999985433
No 177
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.69 E-value=0.0022 Score=60.85 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=53.5
Q ss_pred CChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhhcCCCC
Q 020689 247 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSASP 319 (322)
Q Consensus 247 ~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~~ 319 (322)
.||||.+|...|...+||||.++... ..++..|++|.++- +|..+.||.-|..+|.++++-..
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~--------~~rSr~G~lPFIEL--NGe~iaDS~~I~~~L~~hf~~~~ 122 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSL--------KRRSRNGTLPFIEL--NGEHIADSDLIEDRLRKHFKIPD 122 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccc--------eeeccCCCcceEEe--CCeeccccHHHHHHHHHHcCCCC
Confidence 58999999999999999999765321 24578999999998 48899999999999999998544
No 178
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.63 E-value=0.0023 Score=52.79 Aligned_cols=30 Identities=20% Similarity=0.581 Sum_probs=28.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
++||+.+.||+|++++..|++.|++|+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~id 30 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAID 30 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEec
Confidence 589999999999999999999999999876
No 179
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.63 E-value=0.0026 Score=54.16 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=29.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
|++||+.+.||+|++++-.|++.||+|+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~id 31 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERN 31 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEee
Confidence 5899999999999999999999999999876
No 180
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.62 E-value=0.0029 Score=52.36 Aligned_cols=31 Identities=19% Similarity=0.516 Sum_probs=29.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
|++||+.+.|++|++++-.|++.|++|+.+.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~id 31 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERN 31 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 5899999999999999999999999999876
No 181
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.59 E-value=0.0069 Score=46.62 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=45.0
Q ss_pred CCchHHHHHHHHHHcCCc---eEEEEee-------cCCCeEEeCCCCeeecChHHHHHHH
Q 020689 142 ACPFCRRVREAITELDLS---VELSGCM-------NRFPFLIDPNTGVSMYESGDIVNYL 191 (322)
Q Consensus 142 ~sp~c~rVR~~L~elgl~---ye~~~v~-------gqVPvLvd~~~G~~l~ES~aIi~YL 191 (322)
.+|-|..+-+.|...+.+ ++++..+ |++|+|++. +|..+.+-.+|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~~Sptg~LP~L~~~-~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPWLSPTGELPALIDS-GGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCCcCCCCCCCEEEEC-CCcEEECHHHHHHhh
Confidence 478999999999999999 9999887 999999983 688999999999998
No 182
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.53 E-value=0.0059 Score=44.77 Aligned_cols=47 Identities=19% Similarity=0.519 Sum_probs=37.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc-----CCceEEEEee-----------cCCCeEEeCCCCeeec
Q 020689 134 RLQLFEFEACPFCRRVREAITEL-----DLSVELSGCM-----------NRFPFLIDPNTGVSMY 182 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el-----gl~ye~~~v~-----------gqVPvLvd~~~G~~l~ 182 (322)
.+++|.-++||+|.+++.+|+++ ++++..++++ ..+|+++. +|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence 47899999999999999999987 5777766665 47999976 455544
No 183
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.45 E-value=0.0039 Score=50.43 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=28.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
++||+.+.||+|++++..|++.|++|+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~id 30 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFID 30 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEe
Confidence 579999999999999999999999999886
No 184
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.41 E-value=0.0037 Score=51.87 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=35.6
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVD 282 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~ 282 (322)
+++|+.+.||+|++++..|++.|++|+.+++......++++.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~ 43 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLD 43 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHH
Confidence 4689999999999999999999999999998665544555543
No 185
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.014 Score=48.20 Aligned_cols=72 Identities=21% Similarity=0.375 Sum_probs=54.2
Q ss_pred CCcchhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCC---hHHHHHHcCCCcccEEEcCCCCcccccHHHHHH
Q 020689 236 PSKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSR---TKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 309 (322)
Q Consensus 236 pe~~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k---~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~ 309 (322)
.+.++.+|+-..||||.+++..|..+++++..+.++..++- ...+.++.+..+||.+..+ |.-+.-..+|++
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~--Gk~iGG~~dl~~ 86 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIG--GKFIGGASDLMA 86 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEEC--CEEEcCHHHHHH
Confidence 45678889999999999999999999999999998765432 3345667888899999874 333344444443
No 186
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.13 E-value=0.014 Score=58.67 Aligned_cols=55 Identities=13% Similarity=0.305 Sum_probs=47.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCCceEEEEee-----------------------cCCCeEEeCCCCeeecChHHHHH
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDLSVELSGCM-----------------------NRFPFLIDPNTGVSMYESGDIVN 189 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-----------------------gqVPvLvd~~~G~~l~ES~aIi~ 189 (322)
+.+++|.-++||+|.+++.+|+++||+|+.+.++ .+||+++. +|..+..-.++..
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~~l~~ 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYDNLMA 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCchHHHH
Confidence 3589999999999999999999999999999887 16899976 5777777777665
No 187
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.07 E-value=0.0095 Score=50.85 Aligned_cols=31 Identities=16% Similarity=0.405 Sum_probs=29.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
|+++|+.+.|+.|++++..|++.|++|+.+.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~d 31 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKN 31 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEE
Confidence 5899999999999999999999999999876
No 188
>PTZ00062 glutaredoxin; Provisional
Probab=96.05 E-value=0.027 Score=51.75 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=46.9
Q ss_pred CceEEEEc-----CCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHH
Q 020689 133 TRLQLFEF-----EACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNY 190 (322)
Q Consensus 133 ~~l~LY~~-----~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~Y 190 (322)
+++.||.- +.||||++++..|+++|++|+.+.+. .+||.+.- +|..|.....+.+.
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~~l 188 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELIGGHDIIKEL 188 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHH
Confidence 57888866 68999999999999999999998886 58999976 57777777666663
No 189
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.03 E-value=0.028 Score=49.07 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=46.4
Q ss_pred eEEEEcC------CCchHHHHHHHHHHcCCceEEEEee-------------------cCCCeEEeCCCCeeecChHHHHH
Q 020689 135 LQLFEFE------ACPFCRRVREAITELDLSVELSGCM-------------------NRFPFLIDPNTGVSMYESGDIVN 189 (322)
Q Consensus 135 l~LY~~~------~sp~c~rVR~~L~elgl~ye~~~v~-------------------gqVPvLvd~~~G~~l~ES~aIi~ 189 (322)
++||... .||+|.+|+.+|+.++|+|+.+++. .+||.+.. +|..|....++.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHHHH
Confidence 6899988 8999999999999999999999985 37899976 6788888877776
Q ss_pred H
Q 020689 190 Y 190 (322)
Q Consensus 190 Y 190 (322)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 3
No 190
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.96 E-value=0.0093 Score=49.43 Aligned_cols=30 Identities=10% Similarity=0.428 Sum_probs=28.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
++||+.+.||+|++++-.|++.|++|+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~id 30 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFID 30 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEe
Confidence 579999999999999999999999999876
No 191
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.039 Score=45.55 Aligned_cols=59 Identities=17% Similarity=0.396 Sum_probs=51.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHcCCceEEEEee------------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 132 PTRLQLFEFEACPFCRRVREAITELDLSVELSGCM------------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 132 ~~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~------------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
.+++.+|.-..||+|.+++.+|..+++.+.++.+| .+||.+.. +|..+....+|.++-.
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMALHK 89 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHHHH
Confidence 36899999999999999999999999999999988 58999976 6888888888877643
No 192
>PRK10026 arsenate reductase; Provisional
Probab=95.92 E-value=0.026 Score=49.02 Aligned_cols=75 Identities=9% Similarity=0.041 Sum_probs=53.2
Q ss_pred cchhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCCh-------------------------------------HHH
Q 020689 238 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRT-------------------------------------KLL 280 (322)
Q Consensus 238 ~~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~-------------------------------------~e~ 280 (322)
.++++|+++.|.-|++++..|.+.|++|+.+++-...... +++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~~~ls~~e~ 81 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAEDKFTDDQL 81 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCccCCCHHHH
Confidence 4689999999999999999999999999999874322111 111
Q ss_pred H---HHcC-CCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 281 V---DITG-SKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 281 ~---~inp-~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
+ ..+| .-+=|+++++++.+...-+..|.+.|.
T Consensus 82 l~ll~~~P~LIKRPIi~~~~~a~i~Rp~e~v~~~l~ 117 (141)
T PRK10026 82 IDFMLQHPILINRPIVVTPLGTRLCRPSEVVLEILP 117 (141)
T ss_pred HHHHHhCccceeCcEEEcCCCeEEECCHHHHHHHhc
Confidence 1 1244 235678887655566677788888873
No 193
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=95.82 E-value=0.013 Score=50.16 Aligned_cols=31 Identities=13% Similarity=0.473 Sum_probs=29.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
|++||+.+.|+.|++++-.|++.|++|+.+.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d 31 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQN 31 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 5899999999999999999999999999876
No 194
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.78 E-value=0.014 Score=42.72 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=41.3
Q ss_pred chhhhcccCChhhHHHHHHHhcC-----CCceEEEEcCCCCCChHHHHHHcCCCcccEEEcC
Q 020689 239 KLELFSYENNPYARIVREALCEL-----ELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 295 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~El-----gLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~ 295 (322)
++++|..+.||+|.+++..|.++ ++++..++++. .+++.+..+...+|.++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~----~~~l~~~~~i~~vPti~i~ 59 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE----FPDLADEYGVMSVPAIVIN 59 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc----CHhHHHHcCCcccCEEEEC
Confidence 36788899999999999998876 57777777653 2456677788899999874
No 195
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.77 E-value=0.038 Score=42.52 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=47.2
Q ss_pred CChhhHHHHHHHhcCCCc---eEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHH
Q 020689 247 NNPYARIVREALCELELP---YILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 312 (322)
Q Consensus 247 ~SPf~rrVR~aL~ElgLp---Ye~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~ 312 (322)
.+|-|.++.+.|+..+.+ |+++..... .++|.+++|+|.+ .++..+.+-..|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~--------~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP--------WLSPTGELPALID-SGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC--------CcCCCCCCCEEEE-CCCcEEECHHHHHHhhC
Confidence 478899999999999999 887764331 3589999999998 34678899999999984
No 196
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.76 E-value=0.014 Score=47.77 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=35.2
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVD 282 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~ 282 (322)
+++|+.+.|+.|++++..|.+.|++|+.+++.......+++.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~ 43 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLER 43 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHH
Confidence 4789999999999999999999999999998665444444433
No 197
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.52 E-value=0.21 Score=45.47 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=45.0
Q ss_pred chhhhcccCChhhHHHHHHHhcCC-----CceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCc---ccccHHHHHHH
Q 020689 239 KLELFSYENNPYARIVREALCELE-----LPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTST---QIGDYKKILSY 310 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~Elg-----LpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~---~LfES~aIl~Y 310 (322)
.+.+|..+.||+|..+...+.++. +.+..++++ +.++..+..+-..+|.++-.+++. ....-..+.++
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~~ 211 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQFLEY 211 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEEEecCCEEEECCCCHHHHHHH
Confidence 456678899999998887776643 333333322 345677778888999887654453 22233456666
Q ss_pred HHh
Q 020689 311 LFQ 313 (322)
Q Consensus 311 L~e 313 (322)
|.+
T Consensus 212 l~~ 214 (215)
T TIGR02187 212 ILS 214 (215)
T ss_pred HHh
Confidence 653
No 198
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.40 E-value=0.047 Score=41.73 Aligned_cols=44 Identities=20% Similarity=0.455 Sum_probs=37.1
Q ss_pred eEEEEcCCCchHHHH----HHHHHHcCCceEEEEee----------cCCCeEEeCCCCeee
Q 020689 135 LQLFEFEACPFCRRV----REAITELDLSVELSGCM----------NRFPFLIDPNTGVSM 181 (322)
Q Consensus 135 l~LY~~~~sp~c~rV----R~~L~elgl~ye~~~v~----------gqVPvLvd~~~G~~l 181 (322)
+.+|. ++||.|..+ ..+++++|++++++.++ ..+|+++- +|..+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAV--DGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEE--CCEEE
Confidence 77888 899999988 77889999999998887 89999987 46544
No 199
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.38 E-value=0.021 Score=47.56 Aligned_cols=39 Identities=3% Similarity=-0.061 Sum_probs=33.2
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTK 278 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~ 278 (322)
+++|+.+.|+.|++++..|++.|++|+.+++-......+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~ 40 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAE 40 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHH
Confidence 679999999999999999999999999999855443333
No 200
>PRK10026 arsenate reductase; Provisional
Probab=95.28 E-value=0.09 Score=45.68 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=31.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCCceEEEEee
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDLSVELSGCM 166 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~ 166 (322)
.+++||+++.|.-|++++..|++.|++|+++.+-
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 3699999999999999999999999999999975
No 201
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.27 E-value=0.025 Score=46.32 Aligned_cols=30 Identities=10% Similarity=0.375 Sum_probs=28.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
+++|+.+.|+.|++++..|++.|++|+++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~d 30 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHD 30 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 589999999999999999999999999886
No 202
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.034 Score=46.73 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=32.8
Q ss_pred cchhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCC
Q 020689 238 KKLELFSYENNPYARIVREALCELELPYILQNVGDGS 274 (322)
Q Consensus 238 ~~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~ 274 (322)
+|+++|+.+.|--|++++..|++.||+|+.+++....
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~ 37 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTP 37 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 3689999999999999999999999999999875443
No 203
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=94.90 E-value=0.037 Score=46.05 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=28.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
++||+.+.|+-|++++..|++.|++|+++.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d 31 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRD 31 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEee
Confidence 789999999999999999999999999876
No 204
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=94.72 E-value=0.038 Score=44.51 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=44.2
Q ss_pred hhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCC----CcccEEEcCCCCcccccHHHHHH
Q 020689 250 YARIVREALCELELPYILQNVGDGSSRTKLLVDITGS----KEVPYLIDPNTSTQIGDYKKILS 309 (322)
Q Consensus 250 f~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~----~qVP~LvD~n~g~~LfES~aIl~ 309 (322)
-|++|+..|..++|+|+.++|..++..++++.+..+. ..||.+..+ +..+....++.+
T Consensus 18 ~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~--~~~iGg~ddl~~ 79 (92)
T cd03030 18 RQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNG--DEYCGDYEAFFE 79 (92)
T ss_pred HHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEEC--CEEeeCHHHHHH
Confidence 4778999999999999999998777778888887654 799988754 344555455444
No 205
>PRK10853 putative reductase; Provisional
Probab=94.72 E-value=0.042 Score=46.09 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=32.2
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGS 274 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~ 274 (322)
|+++|+++.|.-|++++..|++.|++|+.+++-+..
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p 36 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDG 36 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCC
Confidence 478999999999999999999999999999875443
No 206
>PRK10853 putative reductase; Provisional
Probab=94.55 E-value=0.047 Score=45.81 Aligned_cols=31 Identities=10% Similarity=0.329 Sum_probs=29.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
|+++|+++.|.-|++++-.|++.|++|+++.
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d 31 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHD 31 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEee
Confidence 5899999999999999999999999999876
No 207
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.49 E-value=0.057 Score=45.92 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=29.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
.++||+++.|.-|++++..|++.|++|+++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d 32 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQD 32 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEe
Confidence 5899999999999999999999999999886
No 208
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=94.29 E-value=0.071 Score=44.81 Aligned_cols=32 Identities=13% Similarity=0.347 Sum_probs=30.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
+|++||+.+.|.-|++++..|++.||+|+++.
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~ 32 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFID 32 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEE
Confidence 37999999999999999999999999999876
No 209
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.04 E-value=0.076 Score=45.15 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=31.0
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGD 272 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~ 272 (322)
.+++|+++.|.-|++++..|++.|++|+.+++-+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~ 35 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILK 35 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccC
Confidence 4689999999999999999999999999998744
No 210
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=93.50 E-value=0.12 Score=42.70 Aligned_cols=35 Identities=9% Similarity=0.008 Sum_probs=31.1
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCC
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGS 274 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~ 274 (322)
+++|+.+.|.-|++++..|++.|++|+.+++-+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 47899999999999999999999999999975433
No 211
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=93.13 E-value=0.14 Score=42.36 Aligned_cols=43 Identities=7% Similarity=-0.017 Sum_probs=35.0
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHH
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVD 282 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~ 282 (322)
+++|+.+.|.-|++++..|.+.|++|+.+++-+.....+++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~ 43 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEA 43 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHH
Confidence 4689999999999999999999999999998654444444433
No 212
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=92.67 E-value=0.17 Score=41.77 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=28.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
++||+++.|.-|++++-.|++.|++|+++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d 30 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVE 30 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 589999999999999999999999999875
No 213
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.24 Score=38.94 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=45.4
Q ss_pred hhhhcccCChhhHHHHHHHhcCCCceEEEEcCCC----------CCChHHHHH--HcCCCcccEEEcCCCCcc
Q 020689 240 LELFSYENNPYARIVREALCELELPYILQNVGDG----------SSRTKLLVD--ITGSKEVPYLIDPNTSTQ 300 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g----------~~k~~e~~~--inp~~qVP~LvD~n~g~~ 300 (322)
.++|....||-|....+.|+.++++|+.+++-.- ...+++|-+ .++.-.+|+|..+|+.+.
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vV 76 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVV 76 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEE
Confidence 4789999999999999999999999999987321 123455643 456668999987654443
No 214
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=92.43 E-value=0.19 Score=41.65 Aligned_cols=30 Identities=10% Similarity=0.269 Sum_probs=28.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 135 LQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
++||+.+.|+-|++++-.|++.|++|+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d 30 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVK 30 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 589999999999999999999999999875
No 215
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.04 E-value=0.39 Score=40.25 Aligned_cols=56 Identities=21% Similarity=0.437 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHHHc-----CCceEEEEee--------------cCCCeEEeCCCCe-------------eecChHHHHH
Q 020689 142 ACPFCRRVREAITEL-----DLSVELSGCM--------------NRFPFLIDPNTGV-------------SMYESGDIVN 189 (322)
Q Consensus 142 ~sp~c~rVR~~L~el-----gl~ye~~~v~--------------gqVPvLvd~~~G~-------------~l~ES~aIi~ 189 (322)
.||.|..+-=+|.-. .|+++.+..+ ...|+||-+ +|. .|.+...|++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~-~~~~~~~~~~~~~~~rfi~d~~~I~~ 101 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA-DGAPSPDDAGSHGGRRFIDDPRRILR 101 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeC-CCCCCcccccccCCeEEeCCHHHHHH
Confidence 378887777666653 4555555544 789999965 332 7999999999
Q ss_pred HHHHhcCCC
Q 020689 190 YLFQQYGKG 198 (322)
Q Consensus 190 YL~~~y~~~ 198 (322)
||.++||-+
T Consensus 102 ~La~r~g~p 110 (112)
T PF11287_consen 102 YLAERHGFP 110 (112)
T ss_pred HHHHHcCCC
Confidence 999999854
No 216
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.03 E-value=0.7 Score=38.75 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=48.2
Q ss_pred CChhhHHHHHHHhcC-----CCceEEEEcCCCCCChHHHHHHcC--CCcccEEEcCCCC------------cccccHHHH
Q 020689 247 NNPYARIVREALCEL-----ELPYILQNVGDGSSRTKLLVDITG--SKEVPYLIDPNTS------------TQIGDYKKI 307 (322)
Q Consensus 247 ~SPf~rrVR~aL~El-----gLpYe~~~V~~g~~k~~e~~~inp--~~qVP~LvD~n~g------------~~LfES~aI 307 (322)
.||.|..+.-+|.-. .|+.+.+..++ -|.+..++-| +...|+||-+++. ..+.+...|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 488888877666543 24444443332 3566777655 5689999975432 268899999
Q ss_pred HHHHHhhcCCCCC
Q 020689 308 LSYLFQSYSASPS 320 (322)
Q Consensus 308 l~YL~e~y~~~~~ 320 (322)
++||.++|+-..|
T Consensus 100 ~~~La~r~g~p~p 112 (112)
T PF11287_consen 100 LRYLAERHGFPRP 112 (112)
T ss_pred HHHHHHHcCCCCC
Confidence 9999999997654
No 217
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.02 E-value=0.33 Score=32.25 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=39.3
Q ss_pred hhhcccCChhhHHHHHHHh-----cCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCC
Q 020689 241 ELFSYENNPYARIVREALC-----ELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNT 297 (322)
Q Consensus 241 ~LY~~~~SPf~rrVR~aL~-----ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~ 297 (322)
.+|....|++|.+++..+. ..++.+..+++..... ........+...+|+++..+.
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA-LEKELKRYGVGGVPTLVVFGP 62 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH-HhhHHHhCCCccccEEEEEeC
Confidence 3456678999999999998 6678888887755332 222235677889998886543
No 218
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=91.45 E-value=0.76 Score=35.49 Aligned_cols=40 Identities=28% Similarity=0.531 Sum_probs=32.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHcC--CceEEEEee------------cCCCeEEe
Q 020689 135 LQLFEFEACPFCRRVREAITELD--LSVELSGCM------------NRFPFLID 174 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~elg--l~ye~~~v~------------gqVPvLvd 174 (322)
++||+-++|+.|..++.+|.... .++++..+| ..||||..
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYRIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTSTSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCCCCEEEE
Confidence 78999999999999999999764 445555555 88999976
No 219
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=91.25 E-value=0.5 Score=37.42 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=37.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc-----CCceEEEEee-----------cCCCeEEeCCCCeeec
Q 020689 134 RLQLFEFEACPFCRRVREAITEL-----DLSVELSGCM-----------NRFPFLIDPNTGVSMY 182 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el-----gl~ye~~~v~-----------gqVPvLvd~~~G~~l~ 182 (322)
.+.+|.-++||+|..++.+++++ ++.++.+.++ ..+|.++- +|..++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE
Confidence 48888889999999988887776 6778877776 67999986 465444
No 220
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=90.91 E-value=0.67 Score=35.78 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=38.5
Q ss_pred hhhhcccCChhhHHHHHHHhcCC----CceEEEEcCCCCCChHHHHHHcCCCcccEEEcCC
Q 020689 240 LELFSYENNPYARIVREALCELE----LPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPN 296 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~Elg----LpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n 296 (322)
+++|+-++|+.|..++..|.... +.++.+++. ..++|.+..+. .||||..++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~----~d~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID----EDPELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT----TTHHHHHHSCT-STSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC----CCHHHHHHhcC-CCCEEEEcC
Confidence 67899999999999999998553 445566665 34567777774 899998753
No 221
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=90.79 E-value=0.52 Score=31.24 Aligned_cols=40 Identities=28% Similarity=0.508 Sum_probs=30.6
Q ss_pred eEEEEcCCCchHHHHHHHHH-----HcCCceEEEEee--------------cCCCeEEe
Q 020689 135 LQLFEFEACPFCRRVREAIT-----ELDLSVELSGCM--------------NRFPFLID 174 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~-----elgl~ye~~~v~--------------gqVPvLvd 174 (322)
+.+|...+|+.|.+++..+. ..++.+..+.++ ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 45677889999999999999 456777766665 37787764
No 222
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=90.51 E-value=0.36 Score=41.03 Aligned_cols=51 Identities=25% Similarity=0.436 Sum_probs=23.8
Q ss_pred HHHHHHHHHc--CCceEEEEeecCCCeEEeCCCCeeecChHHHHHHHHHhcCCC
Q 020689 147 RRVREAITEL--DLSVELSGCMNRFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 198 (322)
Q Consensus 147 ~rVR~~L~el--gl~ye~~~v~gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~ 198 (322)
.|+-++++.. ++.+++-+ +..-|-|.|..+|..++|+.||++||.+-|.+.
T Consensus 13 LKlalA~~~~~~~lk~~v~e-d~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~ 65 (122)
T PF09635_consen 13 LKLALALEYAQKDLKLEVNE-DESGPLLKDKKSGFELFEPNAIVRYLANDFEGQ 65 (122)
T ss_dssp HHHHHHHHH--STT--EE-S-S--S--EEE-S--S----HHHHHHHHTT--TTT
T ss_pred HHHHHHHHHhCCCCeeeeCC-ccccceeeecCCceEEecccHHHHHHHhhcCCc
Confidence 4566666655 44444322 155699988779999999999999999888653
No 223
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=90.30 E-value=0.88 Score=33.93 Aligned_cols=41 Identities=22% Similarity=0.536 Sum_probs=30.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHH----cCCceEEEEee-------------cCCCeEEe
Q 020689 134 RLQLFEFEACPFCRRVREAITE----LDLSVELSGCM-------------NRFPFLID 174 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~e----lgl~ye~~~v~-------------gqVPvLvd 174 (322)
.+++|.-++||+|..+.-.|++ .+..+.+..++ ..+|+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE
Confidence 4789999999999999888765 35445544554 57899976
No 224
>PHA02125 thioredoxin-like protein
Probab=90.09 E-value=0.54 Score=35.52 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=39.7
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcC
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 295 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~ 295 (322)
|+.+|+.+.|+.|+.+...|.++ +++..+|+.+ ..+++.+..+-..+|+++++
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~--~~~~l~~~~~v~~~PT~~~g 53 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANV--EYTYVDVDTD--EGVELTAKHHIRSLPTLVNT 53 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHH--hheEEeeeCC--CCHHHHHHcCCceeCeEECC
Confidence 46778899999999999888764 4555555543 24567777888899999954
No 225
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=89.21 E-value=1.4 Score=32.79 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=43.3
Q ss_pred chhhhcccCChhhHHHHHHHhc----CC--CceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCc--ccccHHHHHHH
Q 020689 239 KLELFSYENNPYARIVREALCE----LE--LPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTST--QIGDYKKILSY 310 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~E----lg--LpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~--~LfES~aIl~Y 310 (322)
++++|..+.||+|..+...|.+ .+ +.+..++++. .++..+..+...+|+++.++... .......|.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGDVEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCEEEEecCCCHHHHHHH
Confidence 4678899999999988877754 34 4444444432 23445567777899988632111 12245566665
Q ss_pred HHh
Q 020689 311 LFQ 313 (322)
Q Consensus 311 L~e 313 (322)
|.+
T Consensus 78 l~~ 80 (82)
T TIGR00411 78 IKK 80 (82)
T ss_pred HHh
Confidence 554
No 226
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=0.97 Score=35.57 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=29.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCceEEEEee
Q 020689 136 QLFEFEACPFCRRVREAITELDLSVELSGCM 166 (322)
Q Consensus 136 ~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~ 166 (322)
+||+-..||-|.-..+-|+.++++|+.+.+-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt 35 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEIT 35 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehh
Confidence 8999999999999999999999999999875
No 227
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=88.96 E-value=0.97 Score=34.38 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=37.8
Q ss_pred hhhhcccCChhhHHH----HHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEc
Q 020689 240 LELFSYENNPYARIV----REALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLID 294 (322)
Q Consensus 240 i~LY~~~~SPf~rrV----R~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD 294 (322)
+.+|. ..||+|..+ ..++.+++++++.+.++. .++ ....+...+|+++-
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~----~~~-a~~~~v~~vPti~i 55 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD----MNE-ILEAGVTATPGVAV 55 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC----HHH-HHHcCCCcCCEEEE
Confidence 56777 899999987 678888999988888762 222 34467889999987
No 228
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=88.33 E-value=0.72 Score=37.58 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=27.2
Q ss_pred hcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHH
Q 020689 243 FSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVD 282 (322)
Q Consensus 243 Y~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~ 282 (322)
|+.+.|.-|++++..|++.|++|+.+++.+....++++.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~ 40 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRE 40 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHH
Confidence 6778999999999999999999999998664444444433
No 229
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=87.99 E-value=2.2 Score=32.33 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=33.8
Q ss_pred eEEEEcCCCchHHHHHH----HHHHcCCceEEEEee----------cCCCeEEeCCCCeeecCh
Q 020689 135 LQLFEFEACPFCRRVRE----AITELDLSVELSGCM----------NRFPFLIDPNTGVSMYES 184 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~----~L~elgl~ye~~~v~----------gqVPvLvd~~~G~~l~ES 184 (322)
++++ ..+||+|.++.. ++.++|+.++++.+. ..+|.|+- +|...+..
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~~~~~G 63 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIEDFEEIEKYGVMSVPALVI--NGKVVFVG 63 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHHHHHHTT-SSSSEEEE--TTEEEEES
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHHHHHHcCCCCCCEEEE--CCEEEEEe
Confidence 5664 456999985555 666778888887765 89999986 56655443
No 230
>PHA02125 thioredoxin-like protein
Probab=87.16 E-value=1.2 Score=33.54 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=30.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee-------------cCCCeEEe
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM-------------NRFPFLID 174 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-------------gqVPvLvd 174 (322)
|+.+|+-++|+.|+.+.-.|+.+ +++...++ ..+|++++
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCHHHHHHcCCceeCeEEC
Confidence 57899999999999999998764 45555554 57788773
No 231
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=86.77 E-value=0.4 Score=40.78 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=16.5
Q ss_pred CCcccEEEcCCCCcccccHHHHHHHHHhhcCCC
Q 020689 286 SKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 318 (322)
Q Consensus 286 ~~qVP~LvD~n~g~~LfES~aIl~YL~e~y~~~ 318 (322)
...-|-|.+..+|+.|+|..||++||..-|...
T Consensus 33 d~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~ 65 (122)
T PF09635_consen 33 DESGPLLKDKKSGFELFEPNAIVRYLANDFEGQ 65 (122)
T ss_dssp S--S--EEE-S--S----HHHHHHHHTT--TTT
T ss_pred ccccceeeecCCceEEecccHHHHHHHhhcCCc
Confidence 334588988888999999999999999887643
No 232
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.15 E-value=3.7 Score=42.24 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=84.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHc-----CCceEEEEeecCCCeEEeCCCCeeecChHHHHHHHHHhcCCCCCCCCChhhHH
Q 020689 135 LQLFEFEACPFCRRVREAITEL-----DLSVELSGCMNRFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPSTGLLEST 209 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~el-----gl~ye~~~v~gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~~~p~~~~~~~a 209 (322)
+.+|.- .|++|...+.+|+|+ .|.++.+..+...|.+.--.+|.. +. ++| || .| .+ .
T Consensus 23 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~p~~~~~~~~~~---~~--i~f----~g---~P-~g----~ 84 (517)
T PRK15317 23 LVASLD-DSEKSAELKELLEEIASLSDKITVEEDSLDVRKPSFSITRPGED---TG--VRF----AG---IP-MG----H 84 (517)
T ss_pred EEEEeC-CCchHHHHHHHHHHHHHhCCceEEEEccCCCCCCEEEEEcCCcc---ce--EEE----Ee---cC-cc----H
Confidence 555655 689999999999887 455555443345787742112210 00 000 01 11 11 2
Q ss_pred HHHchhhhHhhhcCCcccc-----ccCCCCC-CCcchhhhcccCChhhHHHHHHHhcCCC--ceEEEEcCCCCCChHHHH
Q 020689 210 LITGWMPTIFRAGRGMTLW-----EKARPDP-PSKKLELFSYENNPYARIVREALCELEL--PYILQNVGDGSSRTKLLV 281 (322)
Q Consensus 210 ~v~~Wl~~~~~~~~g~~~~-----~~~~~~~-pe~~i~LY~~~~SPf~rrVR~aL~ElgL--pYe~~~V~~g~~k~~e~~ 281 (322)
++...+..+.+...+-... .+.. .. ....+++|..+.||||..+..++.++-+ |+....+- +....+++.
T Consensus 85 Ef~s~i~~i~~~~~~~~~l~~~~~~~i~-~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i-d~~~~~~~~ 162 (517)
T PRK15317 85 EFTSLVLALLQVGGHPPKLDQEVIEQIK-ALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI-DGALFQDEV 162 (517)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHH-hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE-EchhCHhHH
Confidence 3334444443332211000 0001 11 1235788999999999988776655543 22222221 223456777
Q ss_pred HHcCCCcccEEEcCCCCcc--cccHHHHHHHHHhhcC
Q 020689 282 DITGSKEVPYLIDPNTSTQ--IGDYKKILSYLFQSYS 316 (322)
Q Consensus 282 ~inp~~qVP~LvD~n~g~~--LfES~aIl~YL~e~y~ 316 (322)
+..+-..||.++.++..+. -..-..|++.|.+..+
T Consensus 163 ~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 163 EARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhcccc
Confidence 8888889998886432111 1223567777776543
No 233
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.10 E-value=1.9 Score=35.72 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=41.7
Q ss_pred ccCChhhHHHHHHHhcCC-CceEEEEcCCCCCChHHHHHHcCCCcccEEEcC
Q 020689 245 YENNPYARIVREALCELE-LPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 295 (322)
Q Consensus 245 ~~~SPf~rrVR~aL~Elg-LpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~ 295 (322)
++.|.|+.++-.+|..+| ++|..+||-.+..-|+.+.+.+.=-++|.|..+
T Consensus 27 ~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~ 78 (105)
T COG0278 27 FPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVN 78 (105)
T ss_pred CCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeEC
Confidence 467999999999999999 899999997766666777777766689988763
No 234
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=84.05 E-value=1.2 Score=36.25 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=21.6
Q ss_pred EEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 138 FEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 138 Y~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
|+.+.|.-|++++..|++.|++|+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d 27 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFID 27 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEE
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeeh
Confidence 889999999999999999999999875
No 235
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.97 E-value=8 Score=37.88 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=42.6
Q ss_pred CCchHHHHHHHHHHcCCceEEEEee-------cCCCeEEeCCCCeeecChHHHHHHHHHh
Q 020689 142 ACPFCRRVREAITELDLSVELSGCM-------NRFPFLIDPNTGVSMYESGDIVNYLFQQ 194 (322)
Q Consensus 142 ~sp~c~rVR~~L~elgl~ye~~~v~-------gqVPvLvd~~~G~~l~ES~aIi~YL~~~ 194 (322)
.|+-|..|.+.+...+-+.+++... |++|+|+++ +|..+..-.-|+.||...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~~s~sg~LP~l~~~-ng~~va~~~~iv~~L~k~ 74 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPWRSPSGKLPYLITD-NGTKVAGPVKIVQFLKKN 74 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCCCCCCCCCCeEEec-CCceeccHHHHHHHHHHh
Confidence 3889999999999888555544443 999999986 678999999999999873
No 236
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.75 E-value=5.1 Score=38.88 Aligned_cols=88 Identities=19% Similarity=0.170 Sum_probs=60.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCCceEE-EE-ee------------------------------------------cC
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDLSVEL-SG-CM------------------------------------------NR 168 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl~ye~-~~-v~------------------------------------------gq 168 (322)
....||.--.||++.|..++=..|||+=.+ +. +. -+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 469999999999999999988888885221 11 11 68
Q ss_pred CCeEEeCCCCe-eecChHHHHHHHHHhcCCC--CCCCCChhh-HHHHHchhhhHhh
Q 020689 169 FPFLIDPNTGV-SMYESGDIVNYLFQQYGKG--RSPSTGLLE-STLITGWMPTIFR 220 (322)
Q Consensus 169 VPvLvd~~~G~-~l~ES~aIi~YL~~~y~~~--~~p~~~~~~-~a~v~~Wl~~~~~ 220 (322)
||||-|..+.+ +=-||.+|++-|...|.+- .....-|.+ +.++..|.+++..
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~ 185 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYD 185 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcc
Confidence 99999875554 4579999999998666421 111112222 6777777777654
No 237
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=82.68 E-value=4.3 Score=30.71 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=34.8
Q ss_pred hhhhcccCChhhHHHH----HHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcC
Q 020689 240 LELFSYENNPYARIVR----EALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 295 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR----~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~ 295 (322)
++++ .++||+|..+. .++.++++.++.+++ ...+++ ...+-..+|.|+.+
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~----~~~~~~-~~ygv~~vPalvIn 56 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI----EDFEEI-EKYGVMSVPALVIN 56 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET----TTHHHH-HHTT-SSSSEEEET
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc----cCHHHH-HHcCCCCCCEEEEC
Confidence 4553 45699998554 577788888887775 234455 77888999999874
No 238
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.76 E-value=4.6 Score=37.70 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=47.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------cCCCeEEeCCCCeeecChHHHHHHHHHh
Q 020689 134 RLQLFEFEACPFCRRVREAITELDLSVELSGCM--------NRFPFLIDPNTGVSMYESGDIVNYLFQQ 194 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------gqVPvLvd~~~G~~l~ES~aIi~YL~~~ 194 (322)
.+-|+++ ..|..|...|...+|||.++-++ |+||.|.. +...+.|=..|+.+...+
T Consensus 28 QiLl~d~---ascLAVqtfLrMcnLPf~v~~~~NaefmSP~G~vPllr~--g~~~~aef~pIV~fVeak 91 (257)
T KOG3027|consen 28 QILLPDN---ASCLAVQTFLRMCNLPFNVRQRANAEFMSPGGKVPLLRI--GKTLFAEFEPIVDFVEAK 91 (257)
T ss_pred ccccccc---hhHHHHHHHHHHcCCCceeeecCCccccCCCCCCceeee--cchhhhhhhHHHHHHHHh
Confidence 4555555 35899999999999999999887 99999986 567899999999999887
No 239
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=81.07 E-value=2.1 Score=33.78 Aligned_cols=52 Identities=15% Similarity=0.048 Sum_probs=39.7
Q ss_pred chhhhcccCChhhHHHHHHHhcC-----CCceEEEEcCCCCCChHHHHHHcCCCcccEEEc
Q 020689 239 KLELFSYENNPYARIVREALCEL-----ELPYILQNVGDGSSRTKLLVDITGSKEVPYLID 294 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~El-----gLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD 294 (322)
.+.+|..+.||+|..++..+.++ ++.+..++++. .++..+..+-..+|.++.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~----~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL----FQDEVEERGIMSVPAIFL 71 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh----CHHHHHHcCCccCCEEEE
Confidence 47788889999999888777665 57777777643 245667788888999886
No 240
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=80.65 E-value=8.3 Score=39.69 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=46.6
Q ss_pred chhhhcccCChhhHHHHHHHhcCCC--ceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCccccc----HHHHHHHHH
Q 020689 239 KLELFSYENNPYARIVREALCELEL--PYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGD----YKKILSYLF 312 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgL--pYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfE----S~aIl~YL~ 312 (322)
.+++|....||||..+..++.++-+ |.....+-. ....+++.+..+-..||.++.++ ..+++ -..+++.|.
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id-~~~~~~~~~~~~v~~VP~~~i~~--~~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMID-GALFQDEVEALGIQGVPAVFLNG--EEFHNGRMDLAELLEKLE 196 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE-chhCHHHHHhcCCcccCEEEECC--cEEEecCCCHHHHHHHHh
Confidence 5788999999999988877766543 232222211 23456777878888999888642 22333 345566666
Q ss_pred hh
Q 020689 313 QS 314 (322)
Q Consensus 313 e~ 314 (322)
+.
T Consensus 197 ~~ 198 (515)
T TIGR03140 197 ET 198 (515)
T ss_pred hc
Confidence 55
No 241
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.07 E-value=11 Score=31.25 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=43.0
Q ss_pred CceEEEE-----cCCCchHHHHHHHHHHcC-CceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHH
Q 020689 133 TRLQLFE-----FEACPFCRRVREAITELD-LSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYL 191 (322)
Q Consensus 133 ~~l~LY~-----~~~sp~c~rVR~~L~elg-l~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL 191 (322)
+++.||= ++.|.|+.++--+|..+| ++|..+.|- -++|-|-. +|..+..|. |+.-+
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi--~GEfvGG~D-Iv~Em 91 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV--NGEFVGGCD-IVREM 91 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeE--CCEEeccHH-HHHHH
Confidence 4677774 678999999999999999 677766663 89999954 577666664 54444
Q ss_pred HH
Q 020689 192 FQ 193 (322)
Q Consensus 192 ~~ 193 (322)
.+
T Consensus 92 ~q 93 (105)
T COG0278 92 YQ 93 (105)
T ss_pred HH
Confidence 44
No 242
>PHA03075 glutaredoxin-like protein; Provisional
Probab=77.14 E-value=4.9 Score=34.09 Aligned_cols=60 Identities=22% Similarity=0.368 Sum_probs=47.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCCceEEEEee--------cCCCeEEeCCCCeeecChHHHHHHHHHhc
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDLSVELSGCM--------NRFPFLIDPNTGVSMYESGDIVNYLFQQY 195 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--------gqVPvLvd~~~G~~l~ES~aIi~YL~~~y 195 (322)
+.+.|++-+.|+-|.-+..+|.++.=+|++..++ |+|=+|-.+ .+..+- ..|.+||...|
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSfFsK~g~v~~lg~d-~~y~lI--nn~~~~lgne~ 70 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNILSFFSKDGQVKVLGMD-KGYTLI--NNFFKHLGNEY 70 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeeeeccCCceEEEecc-cceehH--HHHHHhhcccE
Confidence 5799999999999999999999999999999998 898888652 233222 34667776544
No 243
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.46 E-value=11 Score=36.36 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=60.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCCceE-----EEEee-----------------------------------------
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDLSVE-----LSGCM----------------------------------------- 166 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl~ye-----~~~v~----------------------------------------- 166 (322)
..+-||.--.||++.|..+++..+||+=. .+++.
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 46899999999999999999999998622 12201
Q ss_pred ------cCCCeEEeCCCC-eeecChHHHHHHHHHhcC---C-CCCCCCC--hh-hHHHHHchhhhHhh
Q 020689 167 ------NRFPFLIDPNTG-VSMYESGDIVNYLFQQYG---K-GRSPSTG--LL-ESTLITGWMPTIFR 220 (322)
Q Consensus 167 ------gqVPvLvd~~~G-~~l~ES~aIi~YL~~~y~---~-~~~p~~~--~~-~~a~v~~Wl~~~~~ 220 (322)
.+||||=|-.+- .+=-||.+|++.+...|. + ...+..| |. -++.+..|-.|+..
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~ 183 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYD 183 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecc
Confidence 789999875333 456799999999994332 2 1111111 22 26788888777654
No 244
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=72.38 E-value=24 Score=36.73 Aligned_cols=53 Identities=13% Similarity=-0.013 Sum_probs=39.0
Q ss_pred chhhhcccCChhhHHHHH----HHhcC-CCceEEEEcCCCCCChHHHHHHcCCCcccEEEcC
Q 020689 239 KLELFSYENNPYARIVRE----ALCEL-ELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 295 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~----aL~El-gLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~ 295 (322)
.+++|..+.||||..+.. +..+. +|.++.+++.. .+++.+..+-..||.++.+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~----~~~~~~~~~v~~vP~~~i~ 536 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH----FPDLKDEYGIMSVPAIVVD 536 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc----cHHHHHhCCceecCEEEEC
Confidence 478888899999986554 44555 68887776543 3577777888899999874
No 245
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=71.90 E-value=11 Score=27.33 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=30.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHH-----cCCceEEEEee-----------cCCCeEE
Q 020689 133 TRLQLFEFEACPFCRRVREAITE-----LDLSVELSGCM-----------NRFPFLI 173 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~e-----lgl~ye~~~v~-----------gqVPvLv 173 (322)
.-+.+|..++|+.|+.+...+++ .++.+..+.++ ..+|+++
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~ 68 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFL 68 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEE
Confidence 34777777899999999998888 56666655554 5678764
No 246
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=71.53 E-value=30 Score=26.24 Aligned_cols=60 Identities=15% Similarity=0.336 Sum_probs=37.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc----CCceEEEEee-------------cCCCeEEeCCCCeee------cChHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITEL----DLSVELSGCM-------------NRFPFLIDPNTGVSM------YESGDIVNY 190 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el----gl~ye~~~v~-------------gqVPvLvd~~~G~~l------~ES~aIi~Y 190 (322)
-+..+.-++|+.|+..+-.++++ +-++.+..++ ..+|.++-=.+|..+ .+...|.++
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 99 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEF 99 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHH
Confidence 46666778999999888666543 3245555555 788988522245422 345566666
Q ss_pred HHH
Q 020689 191 LFQ 193 (322)
Q Consensus 191 L~~ 193 (322)
|.+
T Consensus 100 i~~ 102 (103)
T PF00085_consen 100 IEK 102 (103)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 247
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=71.41 E-value=5.8 Score=32.36 Aligned_cols=25 Identities=28% Similarity=0.697 Sum_probs=19.1
Q ss_pred CceEEE-EcCCCchHHHHHHHHHHcC
Q 020689 133 TRLQLF-EFEACPFCRRVREAITELD 157 (322)
Q Consensus 133 ~~l~LY-~~~~sp~c~rVR~~L~elg 157 (322)
..+.+| +-++||+|+.++-+|+++.
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la 48 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELS 48 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHH
Confidence 346666 4579999999988888764
No 248
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=70.35 E-value=8.1 Score=31.60 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=30.6
Q ss_pred hhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcC---------CCcccEEEcC
Q 020689 250 YARIVREALCELELPYILQNVGDGSSRTKLLVDITG---------SKEVPYLIDP 295 (322)
Q Consensus 250 f~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp---------~~qVP~LvD~ 295 (322)
.+.++...|+.++|+|+.+++..++..++.|++..+ ....|.|..+
T Consensus 19 ~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~ 73 (99)
T PF04908_consen 19 RQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNG 73 (99)
T ss_dssp HHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEET
T ss_pred HHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeC
Confidence 356888999999999999999887777778877662 2234677654
No 249
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.75 E-value=7.8 Score=37.66 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=51.8
Q ss_pred CCcchhhhcccCChhhHHHHHHHhcCCCce-EEEEc------CCCCCC------------------hHHHHHH----cCC
Q 020689 236 PSKKLELFSYENNPYARIVREALCELELPY-ILQNV------GDGSSR------------------TKLLVDI----TGS 286 (322)
Q Consensus 236 pe~~i~LY~~~~SPf~rrVR~aL~ElgLpY-e~~~V------~~g~~k------------------~~e~~~i----np~ 286 (322)
......||..-.||++.+..++-..+||+- .-+.| +.|+.. .+-|... ++.
T Consensus 48 e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgR 127 (324)
T COG0435 48 EKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGR 127 (324)
T ss_pred CCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCc
Confidence 345688999999999998877766666532 21111 122211 1122222 567
Q ss_pred CcccEEEcCCCC-cccccHHHHHHHHHhhcC
Q 020689 287 KEVPYLIDPNTS-TQIGDYKKILSYLFQSYS 316 (322)
Q Consensus 287 ~qVP~LvD~n~g-~~LfES~aIl~YL~e~y~ 316 (322)
.+||+|-|..+. +.=-||..|+.-+...|.
T Consensus 128 vTVPVLwDk~~~tIVnNES~eIirm~N~aFd 158 (324)
T COG0435 128 VTVPVLWDKKTQTIVNNESAEIIRMFNSAFD 158 (324)
T ss_pred eeEEEEEecCCCeeecCCcHHHHHHHHHHHH
Confidence 799999997544 456789999998886553
No 250
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=68.58 E-value=16 Score=29.25 Aligned_cols=53 Identities=6% Similarity=-0.009 Sum_probs=39.0
Q ss_pred eEEEEcCCCc------hHHHHHHHHHHcCCceEEEEee-------------c------CCCeEEeCCCCeeecChHHHHH
Q 020689 135 LQLFEFEACP------FCRRVREAITELDLSVELSGCM-------------N------RFPFLIDPNTGVSMYESGDIVN 189 (322)
Q Consensus 135 l~LY~~~~sp------~c~rVR~~L~elgl~ye~~~v~-------------g------qVPvLvd~~~G~~l~ES~aIi~ 189 (322)
+++|.-..+. .|++|+.+|+.++|+|+.+.+. + .||-+.- +|..+....++.+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHHH
Confidence 5666654332 5788999999999999999986 2 6787753 5677777766655
No 251
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=65.92 E-value=11 Score=39.39 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=32.4
Q ss_pred ceEEEEcCCCchHHHHHHH----HHHc-CCceEEEEee-----------cCCCeEEe
Q 020689 134 RLQLFEFEACPFCRRVREA----ITEL-DLSVELSGCM-----------NRFPFLID 174 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~----L~el-gl~ye~~~v~-----------gqVPvLvd 174 (322)
.+++|--++||+|.++..+ ..+. +|.++.+.+. ..||.++.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE
Confidence 4889989999999877664 4444 6888888876 78999986
No 252
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=63.04 E-value=13 Score=38.35 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=42.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHc-----CCceEEEEee-----------cCCCeEEeCCCCeeecC----hHHHHHHH
Q 020689 132 PTRLQLFEFEACPFCRRVREAITEL-----DLSVELSGCM-----------NRFPFLIDPNTGVSMYE----SGDIVNYL 191 (322)
Q Consensus 132 ~~~l~LY~~~~sp~c~rVR~~L~el-----gl~ye~~~v~-----------gqVPvLvd~~~G~~l~E----S~aIi~YL 191 (322)
+-.+++|..+.||+|..+..++.++ +|.++.+... ..||.++. +|..+++ -..|++.|
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEFGQGRMTLEEILAKL 194 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEEEecCCCHHHHHHHH
Confidence 3468999999999999988877766 3444444332 88999976 3444444 34677777
Q ss_pred HHhcC
Q 020689 192 FQQYG 196 (322)
Q Consensus 192 ~~~y~ 196 (322)
.+..+
T Consensus 195 ~~~~~ 199 (517)
T PRK15317 195 DTGAA 199 (517)
T ss_pred hcccc
Confidence 66443
No 253
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=62.77 E-value=27 Score=31.60 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=31.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcC-----CceEEEEee-----------cCCCeEEeCCCCe
Q 020689 133 TRLQLFEFEACPFCRRVREAITELD-----LSVELSGCM-----------NRFPFLIDPNTGV 179 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elg-----l~ye~~~v~-----------gqVPvLvd~~~G~ 179 (322)
-.+.+|.-++||+|..+..+++++- +.+..+..+ ..||+++-..+|.
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence 3577788899999999888888753 444333333 6799997532443
No 254
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.44 E-value=14 Score=34.68 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=43.3
Q ss_pred ccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcC
Q 020689 245 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 295 (322)
Q Consensus 245 ~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~ 295 (322)
++.|.|++.+--.|.+.+++|..++|..++.-|+-..+.+.=-+.|.|..+
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~ 201 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVK 201 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeEC
Confidence 567999999999999999999999998877767777777776689988763
No 255
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=61.12 E-value=14 Score=38.00 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=40.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcC-----CceEEEEee-----------cCCCeEEeCCCCeeecCh----HHHHHHHH
Q 020689 133 TRLQLFEFEACPFCRRVREAITELD-----LSVELSGCM-----------NRFPFLIDPNTGVSMYES----GDIVNYLF 192 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elg-----l~ye~~~v~-----------gqVPvLvd~~~G~~l~ES----~aIi~YL~ 192 (322)
-.+++|..+.||||..+..++.++- |..+.+... ..||.++- +|..+++. .++++.|.
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEFHNGRMDLAELLEKLE 196 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEEEecCCCHHHHHHHHh
Confidence 4588999999999999888887764 444443332 88999976 34444442 35566665
Q ss_pred Hh
Q 020689 193 QQ 194 (322)
Q Consensus 193 ~~ 194 (322)
+.
T Consensus 197 ~~ 198 (515)
T TIGR03140 197 ET 198 (515)
T ss_pred hc
Confidence 54
No 256
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=58.98 E-value=29 Score=28.84 Aligned_cols=24 Identities=21% Similarity=0.652 Sum_probs=18.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHc
Q 020689 133 TRLQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~el 156 (322)
.-+..++.++||+|+.+.=.|.++
T Consensus 25 ~~iv~f~~~~Cp~C~~~~P~l~~~ 48 (122)
T TIGR01295 25 TATFFIGRKTCPYCRKFSGTLSGV 48 (122)
T ss_pred cEEEEEECCCChhHHHHhHHHHHH
Confidence 347888899999999876665554
No 257
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.69 E-value=22 Score=33.34 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=44.7
Q ss_pred hhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHhh
Q 020689 249 PYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 314 (322)
Q Consensus 249 Pf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e~ 314 (322)
.-|..|..+|...++||.++-.+.- + -++|.|+||.|..+ .....|=..|+.+.+.+
T Consensus 35 ascLAVqtfLrMcnLPf~v~~~~Na-----e--fmSP~G~vPllr~g--~~~~aef~pIV~fVeak 91 (257)
T KOG3027|consen 35 ASCLAVQTFLRMCNLPFNVRQRANA-----E--FMSPGGKVPLLRIG--KTLFAEFEPIVDFVEAK 91 (257)
T ss_pred hhHHHHHHHHHHcCCCceeeecCCc-----c--ccCCCCCCceeeec--chhhhhhhHHHHHHHHh
Confidence 3578999999999999998754331 2 35899999999886 34667888999988775
No 258
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=57.81 E-value=26 Score=27.14 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=17.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITE 155 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~e 155 (322)
.+.+|.-++|+.|+...-.+++
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~ 37 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNK 37 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 4667777899999988877766
No 259
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=57.45 E-value=23 Score=25.58 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=35.6
Q ss_pred hhhhcccCChhhHHHHHHHhc-----CCCceEEEEcCCCCCChHHHHHHcCCCcccEEEc
Q 020689 240 LELFSYENNPYARIVREALCE-----LELPYILQNVGDGSSRTKLLVDITGSKEVPYLID 294 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~E-----lgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD 294 (322)
+..+..+.|++|+.+...+.+ .++.+..+++.. ..++.+..+...+|.++-
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~v~~~P~~~~ 69 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE----NPELAEEYGVRSIPTFLF 69 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC----ChhHHHhcCcccccEEEE
Confidence 455666789999988887776 667777666543 345556667778997653
No 260
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=55.78 E-value=15 Score=29.85 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=34.8
Q ss_pred hhhh-cccCChhhHHHHHHHhcCC-----CceEEEEcCCCCCChHHHHHHcCCCcccEEEc
Q 020689 240 LELF-SYENNPYARIVREALCELE-----LPYILQNVGDGSSRTKLLVDITGSKEVPYLID 294 (322)
Q Consensus 240 i~LY-~~~~SPf~rrVR~aL~Elg-----LpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD 294 (322)
+.++ +.+.||+|+.++..|.++. +.+..++++. .+++.+..+-..||.++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~----~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE----DKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc----CHHHHHHcCCCcCCEEEE
Confidence 3344 5679999998888777654 3444455442 356777788889998764
No 261
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=51.20 E-value=22 Score=33.39 Aligned_cols=25 Identities=20% Similarity=0.642 Sum_probs=19.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHH
Q 020689 131 SPTRLQLFEFEACPFCRRVREAITE 155 (322)
Q Consensus 131 p~~~l~LY~~~~sp~c~rVR~~L~e 155 (322)
.+..+.+|..+.||||+|....+.+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHH
Confidence 3346777888899999999877654
No 262
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=50.06 E-value=23 Score=32.83 Aligned_cols=34 Identities=15% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHc-CCceEEEE
Q 020689 131 SPTRLQLFEFEACPFCRRVREAITEL-DLSVELSG 164 (322)
Q Consensus 131 p~~~l~LY~~~~sp~c~rVR~~L~el-gl~ye~~~ 164 (322)
....+.+|..+.||||+|..--+.++ +..++++.
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~ 141 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNALGITVRY 141 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEE
Confidence 34568888888999999998877775 33455443
No 263
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=49.98 E-value=16 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.585 Sum_probs=16.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q 020689 132 PTRLQLFEFEACPFCRRVREAITE 155 (322)
Q Consensus 132 ~~~l~LY~~~~sp~c~rVR~~L~e 155 (322)
...+.++.-++||+|++....+..
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHH
Confidence 345777778899999998776664
No 264
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.10 E-value=38 Score=31.87 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=43.9
Q ss_pred CceEEEE-----cCCCchHHHHHHHHHHcCCceEEEEee---------------cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 133 TRLQLFE-----FEACPFCRRVREAITELDLSVELSGCM---------------NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 133 ~~l~LY~-----~~~sp~c~rVR~~L~elgl~ye~~~v~---------------gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
++++||- .+.|.|++++--.|.+.|++|....|- -++|-|-- +|..+... +|+.-+.
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI--~GEFiGGl-DIl~~m~ 215 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYV--KGEFIGGL-DILKEMH 215 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeE--CCEeccCc-HHHHHHh
Confidence 5677774 568999999999999999999998875 89999965 57655555 4444443
No 265
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=48.05 E-value=28 Score=27.18 Aligned_cols=55 Identities=9% Similarity=0.096 Sum_probs=33.9
Q ss_pred chhhhcccCChhhHHHHHHH------h-cC--CCceEEEEcCCCCCChHHHHHHcCCCcccEEE
Q 020689 239 KLELFSYENNPYARIVREAL------C-EL--ELPYILQNVGDGSSRTKLLVDITGSKEVPYLI 293 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL------~-El--gLpYe~~~V~~g~~k~~e~~~inp~~qVP~Lv 293 (322)
.+..|..+.|++|+.....+ . .+ ++.+..+++.......+++.+..+-..+|.++
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 35567778999999776433 1 11 34454555544333346777777888899665
No 266
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=47.53 E-value=34 Score=28.38 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=33.9
Q ss_pred chhhhcccCChhhHHHHHH----HhcCCCceEEEEcCCCC----C---ChHHHHHHcC----CCcccEEEc
Q 020689 239 KLELFSYENNPYARIVREA----LCELELPYILQNVGDGS----S---RTKLLVDITG----SKEVPYLID 294 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~a----L~ElgLpYe~~~V~~g~----~---k~~e~~~inp----~~qVP~LvD 294 (322)
.+..++.+.||+|+.+.-. .++.++++-.++++... . +-.++.+..+ ...+|.++.
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~ 96 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVH 96 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEE
Confidence 3556778899999985544 44445777777776432 1 1124444433 345998764
No 267
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=47.37 E-value=35 Score=30.23 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHcCCceEEEE
Q 020689 131 SPTRLQLFEFEACPFCRRVREAITELDLSVELSG 164 (322)
Q Consensus 131 p~~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~ 164 (322)
.+..+.+|..+.||||++....+.+..-++.++.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~ 110 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRI 110 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEE
Confidence 3456888888899999999998886433444443
No 268
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=45.55 E-value=42 Score=34.85 Aligned_cols=58 Identities=17% Similarity=0.378 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHcCCceEEEEee--cCCCeEEeCCCC---eeecChHHHHHHH
Q 020689 132 PTRLQLFEFEACPFCRRVREAITELDLSVELSGCM--NRFPFLIDPNTG---VSMYESGDIVNYL 191 (322)
Q Consensus 132 ~~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~--gqVPvLvd~~~G---~~l~ES~aIi~YL 191 (322)
++-+++++.-.|.+.+.+..+|+...+.|.+..++ |..|+|.|.+-| .+|+|+ |..|+
T Consensus 60 p~VLVFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~~kg~lP~LT~~~kGRy~lII~EN--l~kYl 122 (487)
T PF12062_consen 60 PKVLVFVESQYSQLGQDIVAILESNRFKYKVEIASGKGDLPVLTDNDKGRYSLIIFEN--LLKYL 122 (487)
T ss_pred CeEEEEEeeccchhhHHHHHHHHhceeeEEEEEccCCCCCCccccCCCCcEEEEEehh--HHHHc
Confidence 35588888778999999999999999999999888 599999986555 478987 55554
No 269
>PTZ00051 thioredoxin; Provisional
Probab=45.50 E-value=56 Score=24.89 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=17.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc
Q 020689 134 RLQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el 156 (322)
-+..+.-++|+.|+++.-.++.+
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l 43 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEEC 43 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHH
Confidence 45666778999999887777664
No 270
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=45.09 E-value=92 Score=23.25 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=15.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHc
Q 020689 135 LQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~el 156 (322)
+..+.-++|+.|+.+...+.++
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~ 39 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEEL 39 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHH
Confidence 4455567899999887666553
No 271
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.81 E-value=46 Score=31.23 Aligned_cols=60 Identities=32% Similarity=0.558 Sum_probs=37.2
Q ss_pred ceEEEEcCCCchHH----HHHHHHHHcCCceEEEEeecCCCeEEeCCCCeeecChHHHHHHHHHhcCCC
Q 020689 134 RLQLFEFEACPFCR----RVREAITELDLSVELSGCMNRFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 198 (322)
Q Consensus 134 ~l~LY~~~~sp~c~----rVR~~L~elgl~ye~~~v~gqVPvLvd~~~G~~l~ES~aIi~YL~~~y~~~ 198 (322)
.|.+|.-..||+|+ |.+-++.+.+-.+.+.. --=|++.+|+ .--+..++.+||.++|+..
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i--~w~pf~l~p~---~~~~g~~~~~~l~~k~g~~ 70 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEI--RWRPFELDPD---LPPEGLDRKEYLAQKYGIS 70 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEE--EecccccCCC---CCcccccHHHHHHHHhCcc
Confidence 46677778899994 66667887774432222 1224555441 1122567889999999853
No 272
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=42.98 E-value=49 Score=25.10 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=22.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc----CCceEEEEee
Q 020689 134 RLQLFEFEACPFCRRVREAITEL----DLSVELSGCM 166 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el----gl~ye~~~v~ 166 (322)
-+..|.-++|+.|++..-.|+++ ...+....++
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd 53 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIE 53 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEc
Confidence 35666678999999998877764 2334444444
No 273
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=42.79 E-value=88 Score=24.95 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=36.6
Q ss_pred EEcCCCchHHHHHHHHHHcCC--ceEEEEee------------------cCCCeEEeCCCCe-eecChHHHHHHHHHh
Q 020689 138 FEFEACPFCRRVREAITELDL--SVELSGCM------------------NRFPFLIDPNTGV-SMYESGDIVNYLFQQ 194 (322)
Q Consensus 138 Y~~~~sp~c~rVR~~L~elgl--~ye~~~v~------------------gqVPvLvd~~~G~-~l~ES~aIi~YL~~~ 194 (322)
|.-..||+|.+..-.+..++- .++.+++. .+.-.+ ++ +|. ....+.|+++-+...
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-ID-DGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ec-CCCEEEEcHHHHHHHHHHc
Confidence 344579999999988888875 45555541 222333 33 455 899999998876653
No 274
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=42.67 E-value=28 Score=25.69 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=17.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHc
Q 020689 135 LQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR~~L~el 156 (322)
+.+|.-..||+|+...-.+.++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3567777999999888888775
No 275
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=42.39 E-value=73 Score=25.00 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=16.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITE 155 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~e 155 (322)
-+..+.-++|+.|++..-.+++
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~ 42 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEE 42 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHH
Confidence 3566667799999988766653
No 276
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=42.31 E-value=39 Score=27.56 Aligned_cols=24 Identities=17% Similarity=0.479 Sum_probs=18.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHc
Q 020689 133 TRLQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~el 156 (322)
..+..|.-..||+|++..-.+..+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~ 30 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKL 30 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHH
Confidence 456777777999999987766653
No 277
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=42.02 E-value=43 Score=28.81 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=24.9
Q ss_pred eEEEEcCCCchHH----HHHHHHHHc-CCceEEEEee
Q 020689 135 LQLFEFEACPFCR----RVREAITEL-DLSVELSGCM 166 (322)
Q Consensus 135 l~LY~~~~sp~c~----rVR~~L~el-gl~ye~~~v~ 166 (322)
+++|.-..||||. +++.++++. ++.++.+++.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 6788888999996 455566666 8999988865
No 278
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=41.74 E-value=58 Score=29.44 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=25.2
Q ss_pred eEEEEcCCCchHHHHH----HHHHHcCCceEEEEee----cCCCeEEe
Q 020689 135 LQLFEFEACPFCRRVR----EAITELDLSVELSGCM----NRFPFLID 174 (322)
Q Consensus 135 l~LY~~~~sp~c~rVR----~~L~elgl~ye~~~v~----gqVPvLvd 174 (322)
+..|--.+||+|++.. .+.++.|+.+..+.++ ..+|++.|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~d 120 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALP 120 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEec
Confidence 4445556899999864 3444457655555555 45677775
No 279
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=40.86 E-value=62 Score=27.16 Aligned_cols=17 Identities=12% Similarity=0.552 Sum_probs=12.0
Q ss_pred ceEEEEcCCCchHHHHH
Q 020689 134 RLQLFEFEACPFCRRVR 150 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR 150 (322)
-+..++-.+|+.|++.-
T Consensus 18 Vll~f~a~WC~~Ck~me 34 (124)
T cd02955 18 IFLSIGYSTCHWCHVME 34 (124)
T ss_pred EEEEEccCCCHhHHHHH
Confidence 34446667999999763
No 280
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=40.41 E-value=64 Score=24.90 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=34.0
Q ss_pred cchhhhcccCChhhHHHHHHHhc----C--CCceEEEEcCCCCCChHHHHHHcCCCcccEEE
Q 020689 238 KKLELFSYENNPYARIVREALCE----L--ELPYILQNVGDGSSRTKLLVDITGSKEVPYLI 293 (322)
Q Consensus 238 ~~i~LY~~~~SPf~rrVR~aL~E----l--gLpYe~~~V~~g~~k~~e~~~inp~~qVP~Lv 293 (322)
..+..|..+.|+.|+.....+.+ . ++.+..++++ +.+++.+..+-..+|.++
T Consensus 15 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~ 72 (97)
T cd02949 15 LILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQ 72 (97)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEE
Confidence 34566777899999988766655 2 2445555543 234666677778899665
No 281
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.70 E-value=91 Score=30.70 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=41.3
Q ss_pred CChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCcccccHHHHHHHHHh
Q 020689 247 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 313 (322)
Q Consensus 247 ~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~YL~e 313 (322)
.++-|..+.+.++-.+-|-.++-... + -+++.+++|+|+++| |..+..-..|+.||.+
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-~-------~~s~sg~LP~l~~~n-g~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-P-------WRSPSGKLPYLITDN-GTKVAGPVKIVQFLKK 73 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-C-------CCCCCCCCCeEEecC-CceeccHHHHHHHHHH
Confidence 47788888877777663333332222 1 126889999999874 6788999999999987
No 282
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=38.07 E-value=82 Score=25.79 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=16.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITE 155 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~e 155 (322)
-+..+.-++|+.|++..-.+.+
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~ 43 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAE 43 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhh
Confidence 4555667899999988665555
No 283
>PF13728 TraF: F plasmid transfer operon protein
Probab=37.90 E-value=92 Score=28.62 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=25.9
Q ss_pred ceEEEEcCCCchHH----HHHHHHHHcCCceEEEEee
Q 020689 134 RLQLFEFEACPFCR----RVREAITELDLSVELSGCM 166 (322)
Q Consensus 134 ~l~LY~~~~sp~c~----rVR~~L~elgl~ye~~~v~ 166 (322)
.|.++.-..||+|. .++.+..+.|+.+..+.+|
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 46666677899996 4666777789999988887
No 284
>PRK09381 trxA thioredoxin; Provisional
Probab=37.40 E-value=1.8e+02 Score=22.57 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=14.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 020689 134 RLQLFEFEACPFCRRVREAITE 155 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~e 155 (322)
-+..+.-++||.|+...-.+++
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~ 45 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDE 45 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHH
Confidence 3455556789999977655544
No 285
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=36.81 E-value=2e+02 Score=25.05 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=42.2
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHcCCceEEEEee-------------cCCC-----eEEeCCCCeeecChHHHHHHH
Q 020689 130 DSPTRLQLFEFEACPFCRRVREAITELDLSVELSGCM-------------NRFP-----FLIDPNTGVSMYESGDIVNYL 191 (322)
Q Consensus 130 ~p~~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~-------------gqVP-----vLvd~~~G~~l~ES~aIi~YL 191 (322)
+++..+.+|+- .||+|...--.|..++-+-.++..+ +.=| ++.+. +|....+|.|+++=+
T Consensus 6 ~~p~~vvlyDG-~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~-~g~~~~~sdA~~~i~ 83 (137)
T COG3011 6 KKPDLVVLYDG-VCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVE-AGQLLVGSDAAIRIL 83 (137)
T ss_pred CCCCEEEEECC-cchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEec-CCceEeccHHHHHHH
Confidence 33344555554 7999987777777777776666555 2111 22232 788999999999988
Q ss_pred HHh
Q 020689 192 FQQ 194 (322)
Q Consensus 192 ~~~ 194 (322)
...
T Consensus 84 ~~L 86 (137)
T COG3011 84 RLL 86 (137)
T ss_pred HHC
Confidence 876
No 286
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=35.98 E-value=1.3e+02 Score=23.93 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=24.4
Q ss_pred ceEEEEcCCCchHHHHHHHH----HHc---CCceEEEEee-----------cCCCeEE
Q 020689 134 RLQLFEFEACPFCRRVREAI----TEL---DLSVELSGCM-----------NRFPFLI 173 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L----~el---gl~ye~~~v~-----------gqVPvLv 173 (322)
-+..+.-++|+.|+...-.+ +++ ++.+-.+.++ ..+|+++
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~ 84 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIV 84 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEE
Confidence 35666678999997654433 332 3444444443 7788875
No 287
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=35.74 E-value=46 Score=29.01 Aligned_cols=31 Identities=29% Similarity=0.731 Sum_probs=21.0
Q ss_pred eEEEEcCCCchHH----HHHHHHHHc----CCceEEEEe
Q 020689 135 LQLFEFEACPFCR----RVREAITEL----DLSVELSGC 165 (322)
Q Consensus 135 l~LY~~~~sp~c~----rVR~~L~el----gl~ye~~~v 165 (322)
|.+|.-..||||. +++.++++. +++++.+++
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 4577778999997 555556666 466666653
No 288
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.94 E-value=57 Score=31.67 Aligned_cols=77 Identities=19% Similarity=0.142 Sum_probs=50.2
Q ss_pred CcchhhhcccCChhhHHHHHHHhcCCCc----eEEE-Ec--CCCC-------------------------CChHHH-HHH
Q 020689 237 SKKLELFSYENNPYARIVREALCELELP----YILQ-NV--GDGS-------------------------SRTKLL-VDI 283 (322)
Q Consensus 237 e~~i~LY~~~~SPf~rrVR~aL~ElgLp----Ye~~-~V--~~g~-------------------------~k~~e~-~~i 283 (322)
+....||..-.||++.|..+++..+||+ +-.+ ++ ++|+ .+-.++ ...
T Consensus 35 kgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~ 114 (319)
T KOG2903|consen 35 KGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIA 114 (319)
T ss_pred CceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhc
Confidence 3567889888999999999988888864 2221 21 1111 011122 222
Q ss_pred ----cCCCcccEEEcCCC-CcccccHHHHHHHHHh
Q 020689 284 ----TGSKEVPYLIDPNT-STQIGDYKKILSYLFQ 313 (322)
Q Consensus 284 ----np~~qVP~LvD~n~-g~~LfES~aIl~YL~e 313 (322)
.+..+||+|=|-.. .+.=-||.+|++.+..
T Consensus 115 ~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs 149 (319)
T KOG2903|consen 115 SPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNS 149 (319)
T ss_pred CCCCCceEEEEEEEccccceeecCchHHHHHHHhh
Confidence 44669999988643 3556789999999983
No 289
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=34.09 E-value=1.1e+02 Score=24.86 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=30.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc-----CCceEEEEee-----------cCCCeEEeCCCCeeec
Q 020689 134 RLQLFEFEACPFCRRVREAITEL-----DLSVELSGCM-----------NRFPFLIDPNTGVSMY 182 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el-----gl~ye~~~v~-----------gqVPvLvd~~~G~~l~ 182 (322)
-+..|.-++|+.|+.+.-.|+++ ++.+-.+.++ ..+|+++-=.+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 45566668999999888877664 3333333333 7889885322565443
No 290
>PRK10996 thioredoxin 2; Provisional
Probab=33.53 E-value=2.5e+02 Score=23.55 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=28.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHH----cCCceEEEEee-------------cCCCeEEeCCCCe
Q 020689 134 RLQLFEFEACPFCRRVREAITE----LDLSVELSGCM-------------NRFPFLIDPNTGV 179 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~e----lgl~ye~~~v~-------------gqVPvLvd~~~G~ 179 (322)
.+..+.-++|+.|++..-.+.+ .+-.+.+..++ ..+|+++--.+|.
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCE
Confidence 4666666899999976555544 33334444444 7788885222565
No 291
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=33.14 E-value=62 Score=25.78 Aligned_cols=65 Identities=8% Similarity=0.049 Sum_probs=42.0
Q ss_pred ChhhHHHHHHHhcCCCceEEEEcCCC---------------CC---ChHHHHHHcCCCcccEEEcCCCCcccccHHHHHH
Q 020689 248 NPYARIVREALCELELPYILQNVGDG---------------SS---RTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 309 (322)
Q Consensus 248 SPf~rrVR~aL~ElgLpYe~~~V~~g---------------~~---k~~e~~~inp~~qVP~LvD~n~g~~LfES~aIl~ 309 (322)
|-.+.+++..+.+.|++++...+... ++ ..+++.+......+|+...+.......+-.+|+.
T Consensus 13 S~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~dg~~il~ 92 (96)
T cd05564 13 SILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMMNGEKVLK 92 (96)
T ss_pred HHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccCCHHHHHH
Confidence 34566788888888888876654311 11 1233333344567898887666777888888887
Q ss_pred HHH
Q 020689 310 YLF 312 (322)
Q Consensus 310 YL~ 312 (322)
.+.
T Consensus 93 ~~~ 95 (96)
T cd05564 93 QAL 95 (96)
T ss_pred HHh
Confidence 654
No 292
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=31.86 E-value=1.3e+02 Score=26.48 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=29.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHcCCceEEEEee
Q 020689 133 TRLQLFEFEACPFCRRVREAITELDLSVELSGCM 166 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~elgl~ye~~~v~ 166 (322)
..+..|.-+.|..|..--..|+.+|..+..+..+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~ 59 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETD 59 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecC
Confidence 3688999999999999888999999988888776
No 293
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=31.73 E-value=65 Score=27.70 Aligned_cols=32 Identities=6% Similarity=0.112 Sum_probs=22.9
Q ss_pred eEEEEcCCCchHHH----HHHHHHHcCCceEEEEee
Q 020689 135 LQLFEFEACPFCRR----VREAITELDLSVELSGCM 166 (322)
Q Consensus 135 l~LY~~~~sp~c~r----VR~~L~elgl~ye~~~v~ 166 (322)
|.+|.-..||+|+. ++-+..+.+++++.+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 45777779999975 445556678888887754
No 294
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=31.46 E-value=78 Score=28.34 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=25.2
Q ss_pred ceEEEEcCCCchHH----HHHHHHHHcCCceEEEEee
Q 020689 134 RLQLFEFEACPFCR----RVREAITELDLSVELSGCM 166 (322)
Q Consensus 134 ~l~LY~~~~sp~c~----rVR~~L~elgl~ye~~~v~ 166 (322)
.|.+|.-..||||+ +++.++.+.+++++.+++.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 47788888999996 4555667778888888754
No 295
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=30.95 E-value=3.2e+02 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=15.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc
Q 020689 134 RLQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el 156 (322)
-+..|.-++|+.|++..-.+.++
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l 45 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKL 45 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHH
Confidence 34455566999998877666554
No 296
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=30.70 E-value=59 Score=30.17 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=19.9
Q ss_pred CcchhhhcccCChhhHHHHHHHhcC
Q 020689 237 SKKLELFSYENNPYARIVREALCEL 261 (322)
Q Consensus 237 e~~i~LY~~~~SPf~rrVR~aL~El 261 (322)
...+.+|+.+.||||++...-+.++
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHH
Confidence 4467889999999999987766654
No 297
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=27.59 E-value=43 Score=25.34 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=44.6
Q ss_pred chhhhcccCChhhHHHHHHHhc----C--CCceEEEEcCCCCCChHHHHHHcCCCcccEEEcCCCCc------ccccHHH
Q 020689 239 KLELFSYENNPYARIVREALCE----L--ELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTST------QIGDYKK 306 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~E----l--gLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD~n~g~------~LfES~a 306 (322)
.+..+..+.|+.|+..+..+.+ . ++.+-.+++. +.+++.+..+-..+|.++-=.+|. ...+...
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 95 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAES 95 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHH
Confidence 3455666789999987755432 2 3444444443 335677777888999775321221 2347788
Q ss_pred HHHHHHhh
Q 020689 307 ILSYLFQS 314 (322)
Q Consensus 307 Il~YL~e~ 314 (322)
|.++|+++
T Consensus 96 l~~~i~~~ 103 (103)
T PF00085_consen 96 LIEFIEKH 103 (103)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 88888764
No 298
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=27.52 E-value=1e+02 Score=25.21 Aligned_cols=52 Identities=12% Similarity=0.246 Sum_probs=29.9
Q ss_pred hhhhcccCChhhHHHHHHHhc------CCCceEEEEcCCCCCChHHHHHHcCCC-cccEEE
Q 020689 240 LELFSYENNPYARIVREALCE------LELPYILQNVGDGSSRTKLLVDITGSK-EVPYLI 293 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~E------lgLpYe~~~V~~g~~k~~e~~~inp~~-qVP~Lv 293 (322)
+..+....|+.|+.....+.+ ....|..++++.......+ ..+..+ .+|.++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~--~~~~~g~~vPt~~ 81 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE--EFSPDGGYIPRIL 81 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh--hcccCCCccceEE
Confidence 444666889999987655554 3346777777654322222 223332 389665
No 299
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=26.65 E-value=1.2e+02 Score=24.53 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=13.1
Q ss_pred ceEEEE--cCCCchHHHHHHHHHH
Q 020689 134 RLQLFE--FEACPFCRRVREAITE 155 (322)
Q Consensus 134 ~l~LY~--~~~sp~c~rVR~~L~e 155 (322)
.+.|+- ..+||.|++-.-.|.+
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~ 48 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSK 48 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHH
Confidence 444443 4589999875444444
No 300
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=26.12 E-value=1.6e+02 Score=23.43 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHcCCceEEEEee
Q 020689 144 PFCRRVREAITELDLSVELSGCM 166 (322)
Q Consensus 144 p~c~rVR~~L~elgl~ye~~~v~ 166 (322)
-.+.+++..+++.|+++++..++
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~ 36 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVP 36 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEec
Confidence 45689999999999999998887
No 301
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=25.88 E-value=2.1e+02 Score=24.89 Aligned_cols=75 Identities=11% Similarity=-0.026 Sum_probs=48.3
Q ss_pred chhhhcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCCCcc-c--EEEcCCCCcccccHHHHHHHHHhh
Q 020689 239 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEV-P--YLIDPNTSTQIGDYKKILSYLFQS 314 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~~qV-P--~LvD~n~g~~LfES~aIl~YL~e~ 314 (322)
+++++....||+|...-.+|...+-.-..+.+.-..+.-...+...|...- + ++.+ .+|..+.+|.|+++-+...
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~-~~g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLV-EAGQLLVGSDAAIRILRLL 86 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEe-cCCceEeccHHHHHHHHHC
Confidence 445566678999988777888877766666554433444556666664411 2 2222 2577899999999877654
No 302
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=25.86 E-value=1.9e+02 Score=22.02 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=17.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc
Q 020689 134 RLQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el 156 (322)
.+..+.-++|+.|+...-.++++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l 41 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEF 41 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHH
Confidence 46677778999999877666554
No 303
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=25.23 E-value=89 Score=26.41 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=17.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHc
Q 020689 133 TRLQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~el 156 (322)
..+..|.-..||+|++..-.+..+
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHH
Confidence 346666666899999887766544
No 304
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.19 E-value=72 Score=24.89 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHcCCceEEEEee-cCCCeEEe
Q 020689 144 PFCRRVREAITELDLSVELSGCM-NRFPFLID 174 (322)
Q Consensus 144 p~c~rVR~~L~elgl~ye~~~v~-gqVPvLvd 174 (322)
.|++|+..+++..|+.||..|-. -.+=++++
T Consensus 16 GF~rk~L~I~E~~~is~Eh~PSGID~~Siii~ 47 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMPSGIDDISIIIR 47 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeecCCCccEEEEEE
Confidence 59999999999999999988765 55666665
No 305
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=25.04 E-value=80 Score=26.19 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=16.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHH
Q 020689 132 PTRLQLFEFEACPFCRRVREAIT 154 (322)
Q Consensus 132 ~~~l~LY~~~~sp~c~rVR~~L~ 154 (322)
+..+++|.-..||+|++....+.
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHHh
Confidence 34688888889999998766553
No 306
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=24.60 E-value=62 Score=30.36 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=22.8
Q ss_pred CcchhhhcccCChhhHHHHHHHhc---CC-CceEEEEc
Q 020689 237 SKKLELFSYENNPYARIVREALCE---LE-LPYILQNV 270 (322)
Q Consensus 237 e~~i~LY~~~~SPf~rrVR~aL~E---lg-LpYe~~~V 270 (322)
...+.+|+.+.||||++....+.+ .| |.+.++.+
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 345778889999999998666542 33 55554443
No 307
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=23.72 E-value=69 Score=28.36 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=25.0
Q ss_pred CcchhhhcccCChhhHHHHHHHhc--CCCceEEEEcC
Q 020689 237 SKKLELFSYENNPYARIVREALCE--LELPYILQNVG 271 (322)
Q Consensus 237 e~~i~LY~~~~SPf~rrVR~aL~E--lgLpYe~~~V~ 271 (322)
...+.+|..+.||||++....+.+ .++.+..+.++
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p 114 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVP 114 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcC
Confidence 456778889999999999888874 34444444443
No 308
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.66 E-value=1.1e+02 Score=29.59 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=40.8
Q ss_pred hhHHHHHHHhcCCCceEEEEcCCCCCChHHHHHHcCC----CcccEEEcCCCCcccccHHHHH
Q 020689 250 YARIVREALCELELPYILQNVGDGSSRTKLLVDITGS----KEVPYLIDPNTSTQIGDYKKIL 308 (322)
Q Consensus 250 f~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~~inp~----~qVP~LvD~n~g~~LfES~aIl 308 (322)
-|..||.+|+..++-|+.++|.-+...++|+..+-+. -.+|.+..+ |..|..-..|+
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~--GryIGgaeeV~ 209 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVK--GRYIGGAEEVV 209 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEc--cEEeccHHHhh
Confidence 4689999999999999999997766677888776554 378866653 44444434333
No 309
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=23.52 E-value=2.1e+02 Score=27.15 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=26.4
Q ss_pred CceEEEEcCCCchHHH----HHHHHHHcCCceEEEEee
Q 020689 133 TRLQLFEFEACPFCRR----VREAITELDLSVELSGCM 166 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~r----VR~~L~elgl~ye~~~v~ 166 (322)
..+.++.-..||+|.+ ++.+-+..|+++..+.+|
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~D 182 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVD 182 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecC
Confidence 3466666678999974 666777889999888887
No 310
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=22.67 E-value=2.3e+02 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.4
Q ss_pred ceEEEEcCCCchHHH----HHHHHHHcCCceEEEEee
Q 020689 134 RLQLFEFEACPFCRR----VREAITELDLSVELSGCM 166 (322)
Q Consensus 134 ~l~LY~~~~sp~c~r----VR~~L~elgl~ye~~~v~ 166 (322)
.+.++.-..||+|.+ ++.+.+..|+++..+.+|
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~D 189 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVD 189 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecC
Confidence 466666678999975 555667789999988888
No 311
>PHA02278 thioredoxin-like protein
Probab=22.60 E-value=1.8e+02 Score=23.35 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=34.2
Q ss_pred hhhhcccCChhhHHHHHHHhcC------CCceEEEEcCCCCCChHHHHHHcCCCcccEEEc
Q 020689 240 LELFSYENNPYARIVREALCEL------ELPYILQNVGDGSSRTKLLVDITGSKEVPYLID 294 (322)
Q Consensus 240 i~LY~~~~SPf~rrVR~aL~El------gLpYe~~~V~~g~~k~~e~~~inp~~qVP~LvD 294 (322)
+.-|..+.|+.|+.+.-.+.++ .+++..++++......+++.+...-..+|.++-
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~ 78 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIG 78 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEE
Confidence 3445567899999776555443 234555666643222456667777778997764
No 312
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=22.60 E-value=2e+02 Score=22.11 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=16.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc
Q 020689 134 RLQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el 156 (322)
-+..|.-++|+.|++..-.++++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~ 44 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKA 44 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHH
Confidence 35566668999998876655544
No 313
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=22.60 E-value=1.9e+02 Score=22.25 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=16.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc
Q 020689 134 RLQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el 156 (322)
-+..+.-++|+.|+...-.++++
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~ 43 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREF 43 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHH
Confidence 35566668999999776665554
No 314
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=21.63 E-value=4.2e+02 Score=22.28 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=43.3
Q ss_pred hhhcccCChhhHHHHHHHhcC------CCceEEEEcCCCCCChHHHHHHcCCCcccEEE--cCCCCccc------ccHHH
Q 020689 241 ELFSYENNPYARIVREALCEL------ELPYILQNVGDGSSRTKLLVDITGSKEVPYLI--DPNTSTQI------GDYKK 306 (322)
Q Consensus 241 ~LY~~~~SPf~rrVR~aL~El------gLpYe~~~V~~g~~k~~e~~~inp~~qVP~Lv--D~n~g~~L------fES~a 306 (322)
..|....|+.|+...-.+.++ .+.+..++++. .+..++.+..+-..+|.++ +.+ |..+ ..-..
T Consensus 25 V~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~--~~~~~~~~~~~V~~iPt~v~~~~~-G~~v~~~~G~~~~~~ 101 (142)
T cd02950 25 VEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN--PKWLPEIDRYRVDGIPHFVFLDRE-GNEEGQSIGLQPKQV 101 (142)
T ss_pred EEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC--cccHHHHHHcCCCCCCEEEEECCC-CCEEEEEeCCCCHHH
Confidence 345556899998776555432 24455555543 2224555666777899554 433 3221 23455
Q ss_pred HHHHHHhhcCCCCCC
Q 020689 307 ILSYLFQSYSASPSP 321 (322)
Q Consensus 307 Il~YL~e~y~~~~~~ 321 (322)
|.+.|++......+|
T Consensus 102 l~~~l~~l~~~~~~~ 116 (142)
T cd02950 102 LAQNLDALVAGEPLP 116 (142)
T ss_pred HHHHHHHHHcCCCCC
Confidence 666666666554444
No 315
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=21.50 E-value=1.2e+02 Score=22.73 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=38.1
Q ss_pred chhhhcccCChhhHHHHHHHhcCC--------CceEEEEcCCCCCChHHHHHHcCCCcccEEE--cCCCCcc----cccH
Q 020689 239 KLELFSYENNPYARIVREALCELE--------LPYILQNVGDGSSRTKLLVDITGSKEVPYLI--DPNTSTQ----IGDY 304 (322)
Q Consensus 239 ~i~LY~~~~SPf~rrVR~aL~Elg--------LpYe~~~V~~g~~k~~e~~~inp~~qVP~Lv--D~n~g~~----LfES 304 (322)
.+..|..+.|+.|+.....+..+. +-+..+++ .+..++.+..+-..+|.+. ++++... -...
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~ 91 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA----TAEKDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDL 91 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc----cchHHHHHhCCCCcCCEEEEecCCCcceeecCCCCH
Confidence 356677789999987655443322 22222232 2345666666777899763 3322111 1234
Q ss_pred HHHHHHHHh
Q 020689 305 KKILSYLFQ 313 (322)
Q Consensus 305 ~aIl~YL~e 313 (322)
..+..+|++
T Consensus 92 ~~l~~~i~~ 100 (102)
T TIGR01126 92 EAIVEFVNE 100 (102)
T ss_pred HHHHHHHHh
Confidence 556666665
No 316
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.48 E-value=1.6e+02 Score=25.28 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=27.1
Q ss_pred CCCchHHHH----HHHHHHcCCceEEEEee-cCCCeEEeCCC
Q 020689 141 EACPFCRRV----REAITELDLSVELSGCM-NRFPFLIDPNT 177 (322)
Q Consensus 141 ~~sp~c~rV----R~~L~elgl~ye~~~v~-gqVPvLvd~~~ 177 (322)
.|||.|+++ +.+|++...+..++.|. |.=|+-.||+.
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n 84 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPAN 84 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCC
Confidence 389999864 56777778888888877 66666666643
No 317
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=21.07 E-value=3.3e+02 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=16.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHc
Q 020689 134 RLQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 134 ~l~LY~~~~sp~c~rVR~~L~el 156 (322)
-+..|.-++|+.|+...-+++.+
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~ 42 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKI 42 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHH
Confidence 35566667999999877666554
No 318
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=20.79 E-value=4e+02 Score=21.04 Aligned_cols=70 Identities=19% Similarity=0.096 Sum_probs=36.3
Q ss_pred hcccCChhhHHHHHHHhcCCCceEEEEcCCCCCChHHHH---HHcC--CCcccEEEcCCCCcccccHHHHHHHHHh
Q 020689 243 FSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLV---DITG--SKEVPYLIDPNTSTQIGDYKKILSYLFQ 313 (322)
Q Consensus 243 Y~~~~SPf~rrVR~aL~ElgLpYe~~~V~~g~~k~~e~~---~inp--~~qVP~LvD~n~g~~LfES~aIl~YL~e 313 (322)
+....||+|......+..++-.-....++-......+++ .+++ ..+.-.++ .++......+.|+.+-+..
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLI-DDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEe-cCCCEEEEcHHHHHHHHHH
Confidence 334689999988888887765323333332112222222 2221 11233333 3223377888888876554
No 319
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=20.68 E-value=3.1e+02 Score=19.90 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=18.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHc
Q 020689 133 TRLQLFEFEACPFCRRVREAITEL 156 (322)
Q Consensus 133 ~~l~LY~~~~sp~c~rVR~~L~el 156 (322)
.-+.+|.-++|+.|++..-.+++.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~ 40 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKL 40 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHH
Confidence 467777778999999877766553
No 320
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.30 E-value=60 Score=21.28 Aligned_cols=42 Identities=21% Similarity=0.107 Sum_probs=29.3
Q ss_pred HHHHHHHcCCceEEEE--ee-cCCCeEEeCCCCeeecChHHHHHHHH
Q 020689 149 VREAITELDLSVELSG--CM-NRFPFLIDPNTGVSMYESGDIVNYLF 192 (322)
Q Consensus 149 VR~~L~elgl~ye~~~--v~-gqVPvLvd~~~G~~l~ES~aIi~YL~ 192 (322)
+.++++.+|+...... +. |.+|.... ++..++.-.+|.+|+.
T Consensus 4 ~~e~a~~lgis~~ti~~~~~~g~i~~~~~--g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 4 VEEAAEYLGVSKDTVYRLIHEGELPAYRV--GRHYRIPREDVDEYLE 48 (49)
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCCeEEe--CCeEEEeHHHHHHHHh
Confidence 4566777776644221 22 88898765 5788999999999885
Done!