Query 020690
Match_columns 322
No_of_seqs 143 out of 360
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 06:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 2.6E-30 8.9E-35 196.3 8.1 62 110-171 2-63 (64)
2 2yus_A SWI/SNF-related matrix- 97.5 0.00038 1.3E-08 53.7 7.5 51 109-164 12-62 (79)
3 2yum_A ZZZ3 protein, zinc fing 97.3 0.00057 1.9E-08 51.0 6.5 56 113-170 6-64 (75)
4 2cu7_A KIAA1915 protein; nucle 97.0 0.0035 1.2E-07 46.6 8.4 54 113-171 7-60 (72)
5 1x41_A Transcriptional adaptor 96.6 0.0081 2.8E-07 43.3 7.2 50 113-166 6-55 (60)
6 2iw5_B Protein corest, REST co 96.5 0.0036 1.2E-07 57.8 6.3 54 110-168 128-181 (235)
7 2xag_B REST corepressor 1; ami 96.5 0.0034 1.2E-07 62.7 6.3 53 112-169 377-429 (482)
8 2elk_A SPCC24B10.08C protein; 96.0 0.015 5.2E-07 41.7 6.0 49 115-166 9-57 (58)
9 3sjm_A Telomeric repeat-bindin 95.7 0.03 1E-06 41.4 6.8 52 113-169 9-60 (64)
10 2cqq_A RSGI RUH-037, DNAJ homo 95.7 0.03 1E-06 42.6 6.7 50 115-167 8-58 (72)
11 1ity_A TRF1; helix-turn-helix, 95.4 0.052 1.8E-06 39.8 7.1 56 110-170 5-60 (69)
12 2din_A Cell division cycle 5-l 95.0 0.12 4.2E-06 37.4 7.9 53 114-172 8-60 (66)
13 2d9a_A B-MYB, MYB-related prot 94.9 0.095 3.2E-06 37.3 7.0 49 112-164 5-53 (60)
14 2eqr_A N-COR1, N-COR, nuclear 94.9 0.092 3.1E-06 38.1 6.9 51 111-169 8-58 (61)
15 2aje_A Telomere repeat-binding 94.6 0.075 2.6E-06 43.3 6.6 58 109-171 7-66 (105)
16 1guu_A C-MYB, MYB proto-oncoge 94.5 0.09 3.1E-06 36.3 5.9 46 115-164 3-48 (52)
17 1gvd_A MYB proto-oncogene prot 94.4 0.097 3.3E-06 36.2 5.8 46 115-164 3-48 (52)
18 2cqr_A RSGI RUH-043, DNAJ homo 94.2 0.12 4.1E-06 39.4 6.4 50 114-165 17-67 (73)
19 2hzd_A Transcriptional enhance 94.0 0.048 1.6E-06 43.3 4.0 58 113-171 4-78 (82)
20 2roh_A RTBP1, telomere binding 93.9 0.23 8E-06 41.5 8.3 57 110-171 26-84 (122)
21 1w0t_A Telomeric repeat bindin 93.6 0.24 8.1E-06 34.5 6.6 46 115-162 2-47 (53)
22 2dim_A Cell division cycle 5-l 93.4 0.25 8.4E-06 36.2 6.8 48 113-164 7-54 (70)
23 2cjj_A Radialis; plant develop 93.3 0.19 6.4E-06 40.0 6.3 55 116-172 9-64 (93)
24 2k9n_A MYB24; R2R3 domain, DNA 92.0 0.39 1.3E-05 37.6 6.6 51 115-170 53-103 (107)
25 2yqk_A Arginine-glutamic acid 91.8 0.6 2.1E-05 34.1 6.9 52 112-170 6-57 (63)
26 2ckx_A NGTRF1, telomere bindin 90.9 0.63 2.1E-05 36.2 6.6 50 117-171 2-53 (83)
27 2juh_A Telomere binding protei 90.1 0.7 2.4E-05 38.5 6.6 56 110-170 12-69 (121)
28 1x58_A Hypothetical protein 49 89.9 1.3 4.4E-05 33.5 7.3 55 112-172 5-60 (62)
29 2ltp_A Nuclear receptor corepr 89.2 0.065 2.2E-06 41.6 0.0 50 114-168 15-64 (89)
30 1gv2_A C-MYB, MYB proto-oncoge 88.3 0.93 3.2E-05 35.0 5.8 46 115-164 4-49 (105)
31 2llk_A Cyclin-D-binding MYB-li 87.9 1.2 4E-05 34.0 6.0 43 113-161 21-63 (73)
32 1gv2_A C-MYB, MYB proto-oncoge 87.4 1.3 4.5E-05 34.1 6.1 43 115-162 56-98 (105)
33 3osg_A MYB21; transcription-DN 87.1 1.3 4.5E-05 35.6 6.2 48 112-164 8-55 (126)
34 3osg_A MYB21; transcription-DN 86.3 1.7 6E-05 34.9 6.5 54 115-177 62-115 (126)
35 2k9n_A MYB24; R2R3 domain, DNA 85.7 1.8 6.3E-05 33.7 6.2 47 116-169 2-48 (107)
36 1h8a_C AMV V-MYB, MYB transfor 85.2 2.2 7.4E-05 34.2 6.6 47 114-164 26-72 (128)
37 1h8a_C AMV V-MYB, MYB transfor 83.8 1.5 5.2E-05 35.1 5.0 44 114-162 78-121 (128)
38 2crg_A Metastasis associated p 83.1 3.2 0.00011 31.0 6.2 46 112-161 5-50 (70)
39 4eef_G F-HB80.4, designed hema 82.2 0.51 1.8E-05 36.9 1.6 46 116-163 21-67 (74)
40 1wgx_A KIAA1903 protein; MYB D 81.7 2.6 8.8E-05 32.4 5.4 46 117-164 10-56 (73)
41 1wh5_A ZF-HD homeobox family p 81.4 4.7 0.00016 30.4 6.7 62 109-170 15-78 (80)
42 2da3_A Alpha-fetoprotein enhan 79.4 7.4 0.00025 28.4 7.1 63 109-173 15-77 (80)
43 3zqc_A MYB3; transcription-DNA 79.2 2.5 8.4E-05 34.1 4.8 48 116-171 55-102 (131)
44 1h89_C C-MYB, MYB proto-oncoge 79.1 3.5 0.00012 34.0 5.8 45 114-163 109-153 (159)
45 1h89_C C-MYB, MYB proto-oncoge 78.3 4.8 0.00016 33.2 6.4 47 114-164 57-103 (159)
46 1wh7_A ZF-HD homeobox family p 77.5 5.9 0.0002 30.0 6.2 61 109-170 15-78 (80)
47 3zqc_A MYB3; transcription-DNA 73.8 3.8 0.00013 33.0 4.5 45 116-164 3-47 (131)
48 2dmt_A Homeobox protein BARH-l 73.2 18 0.00061 26.6 7.7 63 109-173 15-77 (80)
49 3hug_A RNA polymerase sigma fa 70.1 12 0.00042 27.5 6.2 48 121-171 26-84 (92)
50 4a69_C Nuclear receptor corepr 69.2 7.9 0.00027 30.4 5.2 41 113-158 41-81 (94)
51 2dms_A Homeobox protein OTX2; 68.7 32 0.0011 25.2 9.0 67 110-178 6-72 (80)
52 1ug2_A 2610100B20RIK gene prod 63.6 51 0.0017 26.9 9.0 64 112-177 30-93 (95)
53 1or7_A Sigma-24, RNA polymeras 62.7 21 0.00071 28.4 6.6 49 120-171 128-187 (194)
54 2dmq_A LIM/homeobox protein LH 58.9 49 0.0017 24.0 7.9 62 110-173 6-67 (80)
55 3mzy_A RNA polymerase sigma-H 55.2 36 0.0012 25.8 6.6 52 117-171 93-155 (164)
56 2cuf_A FLJ21616 protein; homeo 51.3 54 0.0018 24.8 7.0 65 110-174 6-83 (95)
57 1rp3_A RNA polymerase sigma fa 48.5 35 0.0012 27.7 5.9 49 120-171 175-234 (239)
58 2kt0_A Nanog, homeobox protein 46.2 84 0.0029 22.9 8.0 61 110-172 21-81 (84)
59 2e1o_A Homeobox protein PRH; D 46.0 77 0.0026 22.5 7.5 61 111-173 7-67 (70)
60 2da4_A Hypothetical protein DK 45.3 80 0.0027 23.0 6.9 64 110-173 7-72 (80)
61 3nar_A ZHX1, zinc fingers and 44.2 44 0.0015 25.5 5.5 60 111-172 25-84 (96)
62 4b4c_A Chromodomain-helicase-D 42.4 40 0.0014 28.5 5.5 60 112-171 4-63 (211)
63 1x3u_A Transcriptional regulat 41.3 59 0.002 22.6 5.4 39 127-169 22-60 (79)
64 3b73_A PHIH1 repressor-like pr 40.5 44 0.0015 26.7 5.1 49 115-166 7-55 (111)
65 2lfw_A PHYR sigma-like domain; 39.1 85 0.0029 24.8 6.7 36 135-173 107-142 (157)
66 1ign_A Protein (RAP1); RAP1,ye 37.1 25 0.00087 32.6 3.7 50 114-165 7-59 (246)
67 2q1z_A RPOE, ECF SIGE; ECF sig 37.1 17 0.00057 28.7 2.2 49 120-171 123-182 (184)
68 1qgp_A Protein (double strande 36.1 49 0.0017 24.4 4.5 43 119-164 12-55 (77)
69 1fjl_A Paired protein; DNA-bin 35.8 84 0.0029 22.9 5.7 62 109-172 16-77 (81)
70 2dmu_A Homeobox protein goosec 35.4 1.2E+02 0.004 21.5 7.0 62 110-173 6-67 (70)
71 2dmn_A Homeobox protein TGIF2L 35.0 1.2E+02 0.0039 22.6 6.4 63 110-172 6-69 (83)
72 2ebi_A DNA binding protein GT- 32.9 46 0.0016 24.8 3.9 62 112-173 1-71 (86)
73 2da6_A Hepatocyte nuclear fact 32.7 29 0.001 28.0 3.0 62 110-172 5-86 (102)
74 2xsd_C POU domain, class 3, tr 32.5 54 0.0018 27.6 4.7 63 109-173 97-159 (164)
75 1je8_A Nitrate/nitrite respons 31.8 72 0.0025 23.1 4.7 45 117-169 21-65 (82)
76 2djn_A Homeobox protein DLX-5; 31.0 1.4E+02 0.0048 21.1 6.1 62 110-173 6-67 (70)
77 1ofc_X ISWI protein; nuclear p 30.7 78 0.0027 29.9 5.9 50 116-169 111-160 (304)
78 1nk2_P Homeobox protein VND; h 28.7 1.7E+02 0.0056 21.2 7.4 62 110-173 8-69 (77)
79 3c57_A Two component transcrip 28.1 66 0.0023 24.0 4.1 32 136-170 41-72 (95)
80 2o8x_A Probable RNA polymerase 27.4 1.4E+02 0.0048 19.9 6.2 34 136-172 30-63 (70)
81 1wi3_A DNA-binding protein SAT 25.4 2.3E+02 0.008 21.8 6.8 61 110-171 6-66 (71)
82 2cra_A Homeobox protein HOX-B1 25.1 1.8E+02 0.0062 20.5 7.0 62 110-173 6-67 (70)
83 2p7v_B Sigma-70, RNA polymeras 25.1 99 0.0034 21.2 4.3 34 135-171 23-56 (68)
84 1fse_A GERE; helix-turn-helix 23.8 1.1E+02 0.0039 20.6 4.4 31 136-169 25-55 (74)
85 2eqy_A RBP2 like, jumonji, at 23.8 92 0.0032 25.0 4.4 43 121-164 43-92 (122)
86 2lm1_A Lysine-specific demethy 23.1 81 0.0028 24.4 3.9 47 120-168 44-95 (107)
87 2gmg_A Hypothetical protein PF 22.7 87 0.003 25.7 4.1 45 124-171 14-59 (105)
88 2cxy_A BAF250B subunit, HBAF25 22.4 59 0.002 26.2 3.0 46 120-168 51-102 (125)
89 2da2_A Alpha-fetoprotein enhan 22.4 2.1E+02 0.007 20.1 7.3 62 110-173 6-67 (70)
90 2jxj_A Histone demethylase jar 22.3 36 0.0012 25.9 1.7 41 121-163 37-81 (96)
91 2da1_A Alpha-fetoprotein enhan 22.2 2.1E+02 0.0071 20.0 6.6 62 110-173 6-67 (70)
92 3t72_q RNA polymerase sigma fa 21.7 2.1E+02 0.0073 22.0 6.0 32 137-171 39-70 (99)
93 1au7_A Protein PIT-1, GHF-1; c 21.6 1.2E+02 0.0041 24.9 4.8 60 110-171 86-145 (146)
94 2hi3_A Homeodomain-only protei 21.1 2.3E+02 0.0078 20.2 6.5 65 112-177 3-67 (73)
95 2jpc_A SSRB; DNA binding prote 20.3 1.1E+02 0.0037 20.2 3.6 30 137-169 13-42 (61)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=2.6e-30 Score=196.32 Aligned_cols=62 Identities=60% Similarity=1.025 Sum_probs=60.0
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
+.+|+|++||+|||++||+||++||.++|+||+|+++|||+|||++||||||||||++++|.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 46899999999999999999999999999999999999999999999999999999999985
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.45 E-value=0.00038 Score=53.72 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=43.7
Q ss_pred cCCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 109 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
+.....+-.||+|.+++|++||+.+| . .+++|-++|+ +-|..||+.|-++|
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~--~W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-D--DWNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-S--CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-C--CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 34455678899999999999999999 3 4999999987 56999999998877
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00057 Score=50.95 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=46.7
Q ss_pred CCccccChHHHHHHHHHHHHhCCCC---CChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690 113 RPRLVWTPQLHKRFVDAVAHLGIKN---AVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR 170 (322)
Q Consensus 113 KpRl~WT~ELH~rFVeAV~qLG~dk---AtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr 170 (322)
..+-.||+|.+++|+++|+.+|.+. -.++.|-+.|+ +-|..||+.|-|||...+.+
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~--~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG--NRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS--SSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC--CCCHHHHHHHHHHHHHHHHh
Confidence 3455799999999999999999643 45899999885 67999999999999876654
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.02 E-value=0.0035 Score=46.64 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=45.9
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
..+-.||+|.++.|+++|+.+|. .++.|-++| +|-|..+|+.|.++|.....+.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR---RWTKISKLI--GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS---CHHHHHHHH--SSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc---CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhc
Confidence 45668999999999999999997 499999987 4679999999999987666543
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.57 E-value=0.0081 Score=43.30 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=42.0
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHh
Q 020690 113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 166 (322)
Q Consensus 113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl 166 (322)
..+-.||+|..++++++|+.+|..+ ++.|-+.|. +-|..|++.|-++|-.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~~--~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGN--WQDVANQMC--TKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTC--HHHHHHHHT--TSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCc--HHHHHHHhC--CCCHHHHHHHHHHHcc
Confidence 3456799999999999999999533 999999994 6799999999877643
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.52 E-value=0.0036 Score=57.77 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=47.4
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhh
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYL 168 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~l 168 (322)
...|..-+||+|.++.|++|+..+|-+ +..|-++|+ +-|..+|++|-++||.++
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~Vg--TKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIG--NKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHHHS--SCCHHHHHHHHHHTTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHcC--CCCHHHHHHHHHHHHHHh
Confidence 445678899999999999999999965 999999865 559999999999999774
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.49 E-value=0.0034 Score=62.75 Aligned_cols=53 Identities=17% Similarity=0.269 Sum_probs=47.7
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169 (322)
Q Consensus 112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk 169 (322)
.|..-+||+|.|..|+++|.+.|-+ ++.|-+.++.. |..||++|-+|||.++.
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGkd---w~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTTC---HHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 4567899999999999999999965 99999998876 99999999999998653
No 8
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.00 E-value=0.015 Score=41.74 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=41.5
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHh
Q 020690 115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 166 (322)
Q Consensus 115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl 166 (322)
+-.||+|..++++++|+++|..+ ++.|-+.|+. +-|..|++.|-++|.+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~--W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN--WADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC--HHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 34699999999999999999543 9999999973 4599999999988754
No 9
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=95.74 E-value=0.03 Score=41.36 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=42.7
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690 113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169 (322)
Q Consensus 113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk 169 (322)
+.|-.||+|.-++.+++|+++|..+ ++.|.+.+...+-|-.|++- +||..+|
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~---Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIKD---RWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCc--hHHHHhhcCCCCCCHHHHHH---HHHHHhc
Confidence 4456799999999999999999643 99999998888889999874 5666555
No 10
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.66 E-value=0.03 Score=42.59 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=40.5
Q ss_pred ccccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhHhh
Q 020690 115 RLVWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQKYRLY 167 (322)
Q Consensus 115 Rl~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQKYRl~ 167 (322)
.-.||.|-+++|+.|+..++.+ .-.+.+|-+.| |-|.++|+.|-+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 3469999999999999999843 34588999998 47999999987776443
No 11
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=95.44 E-value=0.052 Score=39.84 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=45.7
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR 170 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr 170 (322)
..++.|-.||+|.-.+.+++|+.+|.. .++.|.+.|...|-|-.+++.+ |+.+|+.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~R---w~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKDR---WRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSS--CHHHHHHHSCCSSCCHHHHHHH---HHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC--cHHHHHHHcCcCCCCHHHHHHH---HHHHcCC
Confidence 356788899999999999999999953 3999999997657799999865 5555653
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.99 E-value=0.12 Score=37.43 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=43.2
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhc
Q 020690 114 PRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ 172 (322)
Q Consensus 114 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~ 172 (322)
.+-.||+|..++++++++.+|. .+..|-++|+ -|-.+|+.|-++|-....+..
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~---~W~~Ia~~~g---Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT---QWRTIAPIIG---RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT---CHHHHHHHHS---SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CHHHHhcccC---cCHHHHHHHHHHHhChHhcCC
Confidence 4557999999999999999996 4999999665 699999999888755554433
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=94.92 E-value=0.095 Score=37.27 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=40.2
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
...|-.||+|..++++++|+++|.. .++.|.+.| ++-|-.+++.+-++|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQ--DWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTT--CHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456789999999999999999952 399999997 467999998776554
No 14
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.87 E-value=0.092 Score=38.07 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=39.2
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690 111 LKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169 (322)
Q Consensus 111 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk 169 (322)
.++..-.||+|.|+.|++++.+.|-+ ..+|.++| ++-|..+|.. .|-+..|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk~---w~~Ia~~l--~~rt~~~~v~---~Yy~~Kk 58 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPKN---FGLIASYL--ERKSVPDCVL---YYYLTKK 58 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTTC---HHHHHHHC--TTSCHHHHHH---HHHHHTC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCC---HHHHHHHc--CCCCHHHHHH---HHHHhcC
Confidence 34667899999999999999999943 89998775 5679888864 3544433
No 15
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=94.65 E-value=0.075 Score=43.33 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=47.3
Q ss_pred cCCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHhhhhhh
Q 020690 109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS--VDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 109 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
...++.|-.||+|.-+..+++|+++|..+ ++.|++.+. .++-|..++|. |||..+++.
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~f~~RT~v~lKd---rWrnllk~~ 66 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGR--WRDVKLCAFEDADHRTYVDLKD---KWKTLVHTA 66 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSS--HHHHHSSSSSSTTCCCHHHHHH---HHHHHHHTT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHHHHhccccCCCCHHHHHH---HHHHHHhhc
Confidence 34578899999999999999999999633 999999763 37889999985 788888754
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=94.55 E-value=0.09 Score=36.30 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=38.9
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
+-.||+|..++++++|+++|.. .++.|.+.|. |-|..+++.|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~~--~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTD--DWKVIANYLP--NRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSS--CHHHHHHTST--TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 4579999999999999999962 3999998874 67999999876665
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=94.35 E-value=0.097 Score=36.21 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=38.6
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
+-.||+|..++++++|+++|.. .++.|.+.| +|-|..+++.|-++|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK--RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 4579999999999999999953 399998887 467999999876655
No 18
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.15 E-value=0.12 Score=39.42 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=38.8
Q ss_pred CccccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 020690 114 PRLVWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQKYR 165 (322)
Q Consensus 114 pRl~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQKYR 165 (322)
.+-.||.+..++|++||..+|.+ .-.+.+|-++| +|-|..+|+.|-+++.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 34569999999999999999943 12366776665 5889999999977653
No 19
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=94.01 E-value=0.048 Score=43.30 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=38.5
Q ss_pred CCccccChHHHHHHHHHHHHhC---CCCC--C------------hHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 113 RPRLVWTPQLHKRFVDAVAHLG---IKNA--V------------PKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 113 KpRl~WT~ELH~rFVeAV~qLG---~dkA--t------------PK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
+..-+|.++|-..|++|++.+= ..+- + -..|....| .--|+.||.||||.-+...++.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~~ 78 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSRD 78 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTTC
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhhh
Confidence 3456899999999999999764 2211 0 001111222 3459999999999988776653
No 20
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=93.94 E-value=0.23 Score=41.48 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=47.5
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHhhhhhh
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS--VDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
..+|.|-.||+|.-+..+++|+++|..+ ++.|++.+. .++-|..++| .|||..+++.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~~~~RT~vdlK---dRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGR--WRDVKFRAFENVHHRTYVDLK---DKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSC--HHHHHHHHHSSSCCCCHHHHH---HHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCC--hHHHHHHhccccCCCCHHHHH---HHHHHHHhhc
Confidence 3567888999999999999999999633 999999763 4788999999 5788888754
No 21
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=93.57 E-value=0.24 Score=34.52 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=38.4
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhh
Q 020690 115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQ 162 (322)
Q Consensus 115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQ 162 (322)
|-.||+|..+..+++|+.+|.. .++.|.+.|+..|-|-.+++-+-.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~Rw~ 47 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKDRWR 47 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4579999999999999999953 399999999765779999986533
No 22
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.45 E-value=0.25 Score=36.20 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=39.8
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
..+-.||+|..++++++|+++|.. .++.|-+.|+ +-|..+++-+-.+|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKN--QWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSS--CHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 456689999999999999999943 3999999987 67999998765554
No 23
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=93.28 E-value=0.19 Score=40.02 Aligned_cols=55 Identities=20% Similarity=0.252 Sum_probs=44.9
Q ss_pred cccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhc
Q 020690 116 LVWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ 172 (322)
Q Consensus 116 l~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~ 172 (322)
-.||.|..+.|++|+..+|.+ .-.+.+|-+.| +|-|.++|+.|-+++...++.+.
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~dv~~ie 64 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAV--EGRTPEEVKKHYEILVEDIKYIE 64 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS--TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhh
Confidence 369999999999999999854 23588898877 47899999999998877765543
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=91.98 E-value=0.39 Score=37.60 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=42.5
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690 115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR 170 (322)
Q Consensus 115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr 170 (322)
+-.||+|....++++|..+|.+ +..|-+.| +|-|..+|+.|-..+...+.+
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPK---WNKISKFL--KNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSC---HHHHHHHH--SSSCHHHHHHHHHHHHHHHHS
T ss_pred ccccCHHHHHHHHHHHHHhCcC---HHHHHHHC--CCCCHHHHHHHHHHHHhhHHH
Confidence 4579999999999999999963 99999987 678999999987766555443
No 25
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.75 E-value=0.6 Score=34.14 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=37.7
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR 170 (322)
Q Consensus 112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr 170 (322)
+..+-.||+|.++.|.+|+.+.|-+ ...|.+.| |+.-|..+|. +-|-+..|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v---~fYY~wKkt 57 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGKN---FFRIRKEL-LPNKETGELI---TFYYYWKKT 57 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCSC---HHHHHHHS-CTTSCHHHHH---HHHHHHHCS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCcHHHHH---HHHhcccCC
Confidence 3456789999999999999999965 78887632 3455888875 455444443
No 26
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=90.90 E-value=0.63 Score=36.22 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=41.2
Q ss_pred ccChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHhhhhhh
Q 020690 117 VWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS--VDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 117 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
.||+|..+..+++|+++|..+ ++.|++... +++-|-.++|. |||..+++.
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~--W~~I~~~~~~~~~~RT~~~lKd---rWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKD---KWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSC--HHHHHHHHCTTCTTSCHHHHHH---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCC--cHHHHHhhccccCCCCHHHHHH---HHHHHHHhc
Confidence 599999999999999999643 999998633 47889999996 677777654
No 27
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=90.07 E-value=0.7 Score=38.55 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=46.8
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHhhhhh
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS--VDGLTRENVASHLQKYRLYLKR 170 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTrenVkSHLQKYRl~lkr 170 (322)
..++.|-.||+|.-+..+++|+++|..+ ++.|++.+. .++-|-.++|. |||..+++
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~--W~~Ia~~~~~~f~~RT~v~lKd---RWrnllk~ 69 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKD---KWKTLVHT 69 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGC--HHHHHHHHCSCCSSCCSHHHHH---HHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHhccccCCCCHHHHHH---HHHHHHhh
Confidence 4567889999999999999999999632 999999875 37889999985 67877775
No 28
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=89.94 E-value=1.3 Score=33.46 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=44.7
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhC-CCCCCHHHHHHHhhhhHhhhhhhc
Q 020690 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS-VDGLTRENVASHLQKYRLYLKRMQ 172 (322)
Q Consensus 112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~-V~GLTrenVkSHLQKYRl~lkr~~ 172 (322)
.+.|-.||+|.-+..++.|+++|. .++.|+.--. .++-|.-+||. |||...|+..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~---~W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~~ 60 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN---HWNSILWSFPFQKGRRAVDLAH---KYHRLISGPS 60 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS---CHHHHHHHSCCCTTCCHHHHHH---HHHHHHTCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH---hHHHHHHhCCCccCcccchHHH---HHHHHHhccc
Confidence 357888999999999999999996 4999996433 46779999985 8998877653
No 29
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=89.16 E-value=0.065 Score=41.63 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=41.7
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhh
Q 020690 114 PRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYL 168 (322)
Q Consensus 114 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~l 168 (322)
.+-.||+|....|+++|..+|.+ +..|-+.| +|-|..+|+.|-+.|...+
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~---W~~IA~~l--~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRN---WSAIARMV--GSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 34579999999999999999964 99998886 5779999999987775544
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=88.29 E-value=0.93 Score=35.00 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=37.9
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
+-.||+|..++++++|+.+|.. .++.|-+.| +|-|..+++.+-++|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK--RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCC--cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 4579999999999999999964 399999888 477999998765554
No 31
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=87.87 E-value=1.2 Score=33.95 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=37.7
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 020690 113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHL 161 (322)
Q Consensus 113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHL 161 (322)
..+-.||+|.-+..+++|+++|.+ ++.|-+.| |-|-.+||.+-
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~k---W~~IA~~l---gRt~~q~knRw 63 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGND---WATIGAAL---GRSASSVKDRC 63 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSC---HHHHHHHH---TSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC---HHHHHHHh---CCCHHHHHHHH
Confidence 345689999999999999999965 99999999 77999998764
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=87.39 E-value=1.3 Score=34.11 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=37.0
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhh
Q 020690 115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQ 162 (322)
Q Consensus 115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQ 162 (322)
+-.||+|....++++|.++|.. +..|-+.| +|-|..+|+.|-.
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~rw~ 98 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAIKNHWN 98 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSC---HHHHHTTC--TTCCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCC---HHHHHHHc--CCCCHHHHHHHHH
Confidence 4579999999999999999964 99998875 6889999998744
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=87.12 E-value=1.3 Score=35.61 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=39.0
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
+..|-.||+|.-++.+++|++.|. .++.|.+.|. |-|..+++.+-.+|
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~---~W~~Ia~~~~--~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS---DWKMIAATFP--NRNARQCRDRWKNY 55 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT---CHHHHHHTCT--TCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CHHHHHHHcC--CCCHHHHHHHHhhh
Confidence 456778999999999999999996 4999998875 56888887655444
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=86.26 E-value=1.7 Score=34.89 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=40.2
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcCCCCC
Q 020690 115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGG 177 (322)
Q Consensus 115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ls~~ 177 (322)
+-.||+|..++++++|..+|.. +..|-+.| +|-|..+|+.+ |+..+++ .+++..
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~---W~~Ia~~l--~gRt~~~~k~r---w~~l~~k-~~~p~~ 115 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQ---WAIIAKFF--PGRTDIHIKNR---WVTISNK-LGIPQT 115 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSC---HHHHHTTS--TTCCHHHHHHH---HHHHHHH-TTC---
T ss_pred cccCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHH---HHHHHHh-cCCCCC
Confidence 3469999999999999999954 99998865 57899999987 4444444 344433
No 35
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=85.67 E-value=1.8 Score=33.75 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=37.4
Q ss_pred cccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690 116 LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169 (322)
Q Consensus 116 l~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk 169 (322)
-.||+|.-++++++|+.+|.. .++.|-+.|+ +-|..+++.+ |+.+|.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~--~W~~Ia~~~~--~Rt~~qcr~R---w~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK--DWIRISQLMI--TRNPRQCRER---WNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS--CHHHHHHHTT--TSCHHHHHHH---HHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCCC--CHHHHhhhcC--CCCHHHHHHH---HHHHHc
Confidence 479999999999999999953 3999999986 6688888754 444443
No 36
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=85.23 E-value=2.2 Score=34.16 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=38.2
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 114 PRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 114 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
.+-.||+|.-++++++|+.+|..+ ++.|.+.|+ |-|..+++.+-.+|
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~--W~~Ia~~l~--~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKR--WSDIAKHLK--GRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCC--HHHHHHHSS--SCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHhc--CCcHHHHHHHHHHh
Confidence 456799999999999999999643 999999885 67999988655443
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=83.76 E-value=1.5 Score=35.08 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=37.6
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhh
Q 020690 114 PRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQ 162 (322)
Q Consensus 114 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQ 162 (322)
.+-.||+|..+.++++|+++|.+ +..|-+.| +|-|..+|+.|-.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~r~~ 121 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAVKNHWN 121 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSC---HHHHGGGS--TTCCHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcC---HHHHHHHC--CCCCHHHHHHHHH
Confidence 35679999999999999999964 99998876 6889999998743
No 38
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=83.12 E-value=3.2 Score=30.97 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=35.1
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 020690 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHL 161 (322)
Q Consensus 112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHL 161 (322)
++..-.||+|.++.|.+++...|-+ -..|.+.| |+.-|..+|..+-
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 3566789999999999999999965 78887621 4556888776543
No 39
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=82.24 E-value=0.51 Score=36.88 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=35.1
Q ss_pred cccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhh
Q 020690 116 LVWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQK 163 (322)
Q Consensus 116 l~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQK 163 (322)
-.||.+-.+.|..|+..+..+ .-.+.+|-+.+ +|-|.++|+.|-|-
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V--pGKT~eEVk~hY~~ 67 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV--KGRTPEEVKKHYEL 67 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS--CSSCHHHHHGGGC-
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 359999999999999998732 33466775554 57899999998763
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=81.73 E-value=2.6 Score=32.42 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=35.5
Q ss_pred ccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 117 VWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 117 ~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
.||.+-.++|.+|+..++.+ .-.+.+|-+.+ +|-|.++|..|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V--~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAV--GSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT--TTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 59999999999999999843 23467786665 467999998765543
No 41
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=81.36 E-value=4.7 Score=30.35 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=45.8
Q ss_pred cCCCCCccccChHHHHHHHHHHHHhC--CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690 109 RTLKRPRLVWTPQLHKRFVDAVAHLG--IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR 170 (322)
Q Consensus 109 ~~~kKpRl~WT~ELH~rFVeAV~qLG--~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr 170 (322)
...||.|-..|.+--.......+.+| ........+.++...-|||..+|+-=.|.-|.++++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34577888899986666666667777 344455666677777799999999988888877664
No 42
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=79.43 E-value=7.4 Score=28.35 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=42.9
Q ss_pred cCCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 109 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
...+|.|.++|.+--.. ++.+.... ...+...+.++...-|||..+|+.=.|.-|.+.||...
T Consensus 15 ~~~rr~Rt~ft~~Ql~~-Le~~f~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEI-LYQKYLLD-SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCTTCCSSCCTTTHHH-HHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCHHHHHH-HHHHHHhc-CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 34577888888864333 33333333 23345566666666689999999999999999988653
No 43
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=79.20 E-value=2.5 Score=34.14 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=39.2
Q ss_pred cccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 116 LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 116 l~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
-.||+|....++++|..+|.. +..|-+.| +|-|..+|+.| |+.++++.
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~r---w~~~l~~~ 102 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGSK---WSVIAKLI--PGRTDNAIKNR---WNSSISKR 102 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCSC---HHHHTTTS--TTCCHHHHHHH---HHHTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHH---HHHHHHHH
Confidence 369999999999999999964 99998876 47899999976 55555544
No 44
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=79.09 E-value=3.5 Score=34.02 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=38.4
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhh
Q 020690 114 PRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK 163 (322)
Q Consensus 114 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQK 163 (322)
.+-.||+|....+++++.++|.+ +..|.+.| +|-|..+|+.|-..
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~---W~~Ia~~l--~gRt~~~~knr~~~ 153 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAIKNHWNS 153 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSC---HHHHHTTS--TTCCHHHHHHHHHT
T ss_pred cccCCChHHHHHHHHHHHHHCCC---HHHHHHHC--CCCCHHHHHHHHHH
Confidence 45689999999999999999964 99998875 68899999987543
No 45
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=78.29 E-value=4.8 Score=33.21 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=38.5
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 114 PRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 114 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
.+-.||+|...+++++|+.+|..+ ++.|.+.| +|-|..+++.+-.+|
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCC--HHHHHHTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCccc--HHHHHHHc--CCCCHHHHHHHHHHH
Confidence 456899999999999999999533 89998887 577999998765544
No 46
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=77.53 E-value=5.9 Score=30.00 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=42.2
Q ss_pred cCCCCCccccChHHHHHHHHHHH-HhC--CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690 109 RTLKRPRLVWTPQLHKRFVDAVA-HLG--IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR 170 (322)
Q Consensus 109 ~~~kKpRl~WT~ELH~rFVeAV~-qLG--~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr 170 (322)
...||.|-..|.+--.... ++. ++| ..........++...-||+..+|+.=.|.-|.++++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3457788888886444444 444 466 444455666677777799999999988887776664
No 47
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=73.83 E-value=3.8 Score=33.04 Aligned_cols=45 Identities=9% Similarity=-0.024 Sum_probs=35.5
Q ss_pred cccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 116 LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 116 l~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
-.||+|.-++.+++|+..|.. -++.|.+.| +|-|..++.-+-++|
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQ--NWPRITSFL--PNRSPKQCRERWFNH 47 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSC--CGGGGTTSC--TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcC--CHHHHHHHH--CCCCHHHHHHHHhhc
Confidence 469999999999999999953 388898777 466888887654444
No 48
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.22 E-value=18 Score=26.63 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=42.9
Q ss_pred cCCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 109 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
+..+|.|..+|.+--.....+++. . ..-+...+.++...-|||..+|+.=.|.-|.+.||...
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEK-Q-KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHH-C-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 345778888998644443333333 3 23345566666666689999999999999998887653
No 49
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=70.06 E-value=12 Score=27.52 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhC-----------CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 121 QLHKRFVDAVAHLG-----------IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 121 ELH~rFVeAV~qLG-----------~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
+....+.+++..|- .+.-+-+.|-+.||+ +...|++|+.+-|.+|++.
T Consensus 26 ~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgi---s~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 26 LDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGI---AEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHTSCCCHHHHHHHHTS---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHHHH
Confidence 44556666666665 234566777777764 7888999999988888764
No 50
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=69.16 E-value=7.9 Score=30.39 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=31.3
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHH
Q 020690 113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVA 158 (322)
Q Consensus 113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVk 158 (322)
+..-.||+|.|+.|.+++.+.|-+ ..+|.+.+. .-|..++-
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~---F~~Ia~~l~--~Kt~~~cV 81 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKN---FGLIASFLE--RKTVAECV 81 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTC---HHHHHHTCT--TCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC---HHHHHHHcC--CCCHHHHH
Confidence 345679999999999999999954 788876654 44666543
No 51
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=68.72 E-value=32 Score=25.19 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=46.3
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcCCCCCC
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGG 178 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ls~~g 178 (322)
..+|.|.++|.+--.....++ +.. ...+...+.+|...-+||..+|+.=.|.-|.+.|+.......+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F-~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~ 72 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALF-AKT-RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNG 72 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHH-HHC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHH-Hcc-CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCCC
Confidence 457888899987444333333 333 2344566667777778999999999999999998877644443
No 52
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=63.63 E-value=51 Score=26.86 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=53.3
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcCCCCC
Q 020690 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGG 177 (322)
Q Consensus 112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ls~~ 177 (322)
...-+.||.|--+-.+.++++-|...-+-..|-+.++-. +.++|+-..|..-..++++...++.
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nk--s~nqV~~RFq~Lm~Lf~~~~~~~~~ 93 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNK--TPVEVSHRFRELMQLFHTACESGPS 93 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHCSSSCCC
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHhccCCC
Confidence 456789999999999999999997666777887777644 8999999999988888888776654
No 53
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=62.70 E-value=21 Score=28.35 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHhC-----------CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 120 PQLHKRFVDAVAHLG-----------IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 120 ~ELH~rFVeAV~qLG-----------~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
.++.....+++++|. .+.-+.+.|-+.||+ +...|+++|.+-|.+|++.
T Consensus 128 ~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~lgi---s~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 128 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDC---PVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHTTS---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHHCC---CHHHHHHHHHHHHHHHHHH
Confidence 356666667888776 245667777777764 7899999999999998864
No 54
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.90 E-value=49 Score=24.01 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=43.2
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
..+|.|-+.|.+--... +.+.... ...+...+.++...-|||..+|+.=.|.-|.+.||...
T Consensus 6 ~~rr~Rt~ft~~Q~~~L-e~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTM-KSYFAIN-HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCHHHHHHH-HHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHH-HHHHHHc-CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 35788888998744433 3333333 23446667777777789999999999998888887654
No 55
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=55.22 E-value=36 Score=25.78 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=36.1
Q ss_pred ccChHHHHHHHHHHH-HhC----------CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 117 VWTPQLHKRFVDAVA-HLG----------IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 117 ~WT~ELH~rFVeAV~-qLG----------~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
....+....+.+++. .|. .+.-+-+.|-+.||+ |...|++++++-|.+|++.
T Consensus 93 ~~~~e~~~~l~~~l~~~L~~~~r~v~~~~~~g~s~~EIA~~lgi---s~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 93 YLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSK---NLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTTCCHHHHHHHHTC---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCC---CHHHHHHHHHHHHHHHHHH
Confidence 334555666777777 665 345567777777764 7888999998888888754
No 56
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=51.33 E-value=54 Score=24.84 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=39.4
Q ss_pred CCCCCccccChHHHHHHHHHHHHhC-CCCCChHHHHHhhC------------CCCCCHHHHHHHhhhhHhhhhhhcCC
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLG-IKNAVPKTIMQLMS------------VDGLTRENVASHLQKYRLYLKRMQGL 174 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG-~dkAtPK~ILelM~------------V~GLTrenVkSHLQKYRl~lkr~~~l 174 (322)
..+|.|..||++-......+++.-- .+...=..|.+.+| -..||..+|+.=-|.-|.+.|+....
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 4578999999975444444444311 11111223334444 12389999999999888888876543
No 57
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=48.49 E-value=35 Score=27.66 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhC-----------CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 120 PQLHKRFVDAVAHLG-----------IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 120 ~ELH~rFVeAV~qLG-----------~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
.++...+.+++.+|. .+.-+.+.|-+.||+ |...|++++.+-|.+|++.
T Consensus 175 ~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~lgi---s~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 175 RELTEKVKEAVSKLPEREKLVIQLIFYEELPAKEVAKILET---SVSRVSQLKAKALERLREM 234 (239)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHTSCCCHHHHHHHTTS---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHhCC---CHHHHHHHHHHHHHHHHHH
Confidence 345556666776665 245667777777764 7899999999988888764
No 58
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=46.18 E-value=84 Score=22.94 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=41.2
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhc
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ 172 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~ 172 (322)
..++.|-..|.+--.....++. .. ..-+...+.+|...-|||..+|+.=.|.-|.+.||..
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~-~~-~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQ-RQ-KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHH-HS-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-hC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567888888864443333333 22 2334556666666678999999999999998888754
No 59
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=45.98 E-value=77 Score=22.47 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=43.1
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 111 LKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 111 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
.++.|.++|.+-......+++ .. ...+...+.++...-|||..+|+.=.|.-|.+.++...
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~-~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFE-TQ-KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHH-HC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHH-cC-CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 467888899864444433333 33 23445666677777789999999999999998888654
No 60
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.34 E-value=80 Score=22.98 Aligned_cols=64 Identities=9% Similarity=-0.073 Sum_probs=41.3
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCCh--HHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVP--KTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtP--K~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
..++.|-..|.+--.....+++.-+.....| ..+.++...-|||..+|+-=.|.-|.+.++...
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 3467777778765444444443332221223 345555555689999999999999999988654
No 61
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=44.19 E-value=44 Score=25.46 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=39.1
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhc
Q 020690 111 LKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ 172 (322)
Q Consensus 111 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~ 172 (322)
.++.|.+.|.+--.....++. .. ...+...+.++...-|||..+|+.=.|.-|.+.||.+
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~-~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFV-RT-QWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHH-HC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHH-Hc-CCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 456777788764443333333 22 2234556666767778999999999999999888753
No 62
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=42.36 E-value=40 Score=28.51 Aligned_cols=60 Identities=7% Similarity=-0.022 Sum_probs=46.1
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
+...--||..--++|+.|+..+|.-.-..+.|.+--++.+-|.+.|+...+.+.....+.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~ 63 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKA 63 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 455668999999999999999994333478898887888889999998888777766543
No 63
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.33 E-value=59 Score=22.55 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=27.9
Q ss_pred HHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690 127 VDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169 (322)
Q Consensus 127 VeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk 169 (322)
.+++..+ .+.-+-+.|-+.|++ +...|++|+.+-+.+++
T Consensus 22 ~~vl~l~-~~g~s~~eIA~~l~i---s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 22 RQVLSAV-VAGLPNKSIAYDLDI---SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHHHHHH-TTTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HcCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHc
Confidence 3444444 355678888888876 78889999888777765
No 64
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=40.49 E-value=44 Score=26.73 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=39.4
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHh
Q 020690 115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 166 (322)
Q Consensus 115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl 166 (322)
+..|-...-++.++.+..-| ..+++.|-+.+++ |+|+..|..||++-..
T Consensus 7 ~~~~md~~d~~IL~~L~~~g--~~s~~eLA~~l~~-giS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG--NGSPKELEDRDEI-RISKSSVSRRLKKLAD 55 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS--CBCHHHHHTSTTC-CSCHHHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHcC--CCCHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 45688888899999988777 6789999886633 6799999999998554
No 65
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=39.14 E-value=85 Score=24.80 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=29.0
Q ss_pred CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 135 IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 135 ~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
.+.-+.+.|-+.||+ +...|+++|.+=|.+|++.-.
T Consensus 107 ~~g~s~~EIA~~lgi---s~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEV---DTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp SSCCCHHHHHHTTTS---CHHHHHHHHHHHHHHHHTTSS
T ss_pred HcCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888875 789999999999999997543
No 66
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=37.14 E-value=25 Score=32.64 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=39.3
Q ss_pred CccccChHHHHHHHHHHHHhCCCC--CC-hHHHHHhhCCCCCCHHHHHHHhhhhH
Q 020690 114 PRLVWTPQLHKRFVDAVAHLGIKN--AV-PKTIMQLMSVDGLTRENVASHLQKYR 165 (322)
Q Consensus 114 pRl~WT~ELH~rFVeAV~qLG~dk--At-PK~ILelM~V~GLTrenVkSHLQKYR 165 (322)
.+-.||+|.-+..+++|+++|-.+ .. ++.|-++| +|-|-.+|++|..+|-
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L--pGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV--PNHTGNSIRHRFRVYL 59 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS--TTSCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 455899999999999999999642 23 77888765 5889999999866653
No 67
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=37.11 E-value=17 Score=28.74 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhCCC-----------CCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 120 PQLHKRFVDAVAHLGIK-----------NAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 120 ~ELH~rFVeAV~qLG~d-----------kAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
.+....+.+++++|..+ .-+.+.|-+.| |++...|+++|++-|.+|++.
T Consensus 123 ~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~l---gis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 123 QQENARLGRAIARLPEAQRALIERAFFGDLTHRELAAET---GLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHSCCSSCCSTTTC---CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHH---CcCHHHHHHHHHHHHHHHHHH
Confidence 34566677888877621 22233333333 568899999999999999864
No 68
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=36.14 E-value=49 Score=24.43 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHhC-CCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690 119 TPQLHKRFVDAVAHLG-IKNAVPKTIMQLMSVDGLTRENVASHLQKY 164 (322)
Q Consensus 119 T~ELH~rFVeAV~qLG-~dkAtPK~ILelM~V~GLTrenVkSHLQKY 164 (322)
|++..++.++++...| .+..+.+.|.+.+++ ++..|..||.|-
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L 55 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 6778888999999999 456788999999986 566787777664
No 69
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=35.84 E-value=84 Score=22.92 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=40.2
Q ss_pred cCCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhc
Q 020690 109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ 172 (322)
Q Consensus 109 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~ 172 (322)
+..++.|...|.+--.....++ ... ..-+...+.++...-|||..+|+.=.|.-|.+.++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F-~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAF-ERT-QYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHH-HHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHH-HHc-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3456778888886444333333 333 2233455556655668999999999999998887753
No 70
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.36 E-value=1.2e+02 Score=21.45 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=42.7
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
..+|.|.+.|.+--.....+++. . ...+...+.++...-|||..+|+.=.|.-|.+.++...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~-~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE-T-KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH-C-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-c-CCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 34678888998754444444433 2 22345566666666689999999999999998887653
No 71
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=34.97 E-value=1.2e+02 Score=22.57 Aligned_cols=63 Identities=10% Similarity=-0.081 Sum_probs=43.7
Q ss_pred CCCCCccccChHHHHHHHHHHHH-hCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhc
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAH-LGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ 172 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~q-LG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~ 172 (322)
..+|.|.+.|.+--....+.+.. +--.--+.....+|...-|||..+|+.=.|..|.+.++..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 35678888888755554444443 2222344566667777789999999999999999887653
No 72
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=32.91 E-value=46 Score=24.76 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=42.3
Q ss_pred CCCccccChHHHHHHHHHHHHhC-------CCCCChHHHHHhhCCCC--CCHHHHHHHhhhhHhhhhhhcC
Q 020690 112 KRPRLVWTPQLHKRFVDAVAHLG-------IKNAVPKTIMQLMSVDG--LTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 112 kKpRl~WT~ELH~rFVeAV~qLG-------~dkAtPK~ILelM~V~G--LTrenVkSHLQKYRl~lkr~~~ 173 (322)
|+.+-.||.+.-..|+++...+- ..+..++.|-+.|...| .|-+|.+.-...-....++..+
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999987532 34556778877776433 6888888765554444444443
No 73
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.68 E-value=29 Score=27.97 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCCCCccccChHHHHHHHHHHHHhC--CCCCChHHHHHhhCC------------------CCCCHHHHHHHhhhhHhhhh
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLG--IKNAVPKTIMQLMSV------------------DGLTRENVASHLQKYRLYLK 169 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG--~dkAtPK~ILelM~V------------------~GLTrenVkSHLQKYRl~lk 169 (322)
..+|.|..||++--. .++....-. .+...=..|.+.+|. ..||..+|+.=-|.-|...+
T Consensus 5 ~~Rr~Rt~ft~~ql~-~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 5 SSGRNRFKWGPASQQ-ILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CSCCCCCCCCHHHHH-HHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHH-HHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 467899999986443 344333334 222223345555631 26899999999998888777
Q ss_pred hhc
Q 020690 170 RMQ 172 (322)
Q Consensus 170 r~~ 172 (322)
+.+
T Consensus 84 r~~ 86 (102)
T 2da6_A 84 FRQ 86 (102)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 74
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=32.51 E-value=54 Score=27.63 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=36.2
Q ss_pred cCCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 109 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
...+|.|.++|.+--.. ++.+.+.- ..-+...+.++-..-|||..+|+-=-|.-|.+.||...
T Consensus 97 ~~~rr~Rt~ft~~Ql~~-LE~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGA-LESHFLKC-PKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHH-HHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHH-HHHHHhcC-CCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 34567888899864333 33333333 23345556666555689999999999999999998764
No 75
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.79 E-value=72 Score=23.14 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=31.3
Q ss_pred ccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690 117 VWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169 (322)
Q Consensus 117 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk 169 (322)
..|+..-+.|.- + .+.-+-+.|-+.|++ +...|++|+.+-+.+++
T Consensus 21 ~Lt~~e~~vl~l----~-~~g~s~~eIA~~l~i---s~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILKL----I-AQGLPNKMIARRLDI---TESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHHH----H-TTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH----H-HcCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHc
Confidence 355544444433 2 244568999999976 78999999998777765
No 76
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.02 E-value=1.4e+02 Score=21.10 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=42.4
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
..++.|...|.+-... ++.+.+.. ...+...+.++...-|||..+|+.=.|.-|.+.||...
T Consensus 6 ~~rr~Rt~ft~~Q~~~-Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAA-LQRRFQKT-QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCSSCSSCHHHHHH-HHHHHTTC-SSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCHHHHHH-HHHHHcCC-CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 3467888888864443 33333332 23345566677777789999999999999998887543
No 77
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=30.70 E-value=78 Score=29.88 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=40.0
Q ss_pred cccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690 116 LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169 (322)
Q Consensus 116 l~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk 169 (322)
-.||..--..|+.|+...|.+. -..|...| .|-|.+.|+-|.+.+-.+.+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~--~~~IA~ev--~~Kt~eEV~~Y~~vFw~ry~ 160 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDD--IDNIAKDV--EGKTPEEVIEYNAVFWERCT 160 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTC--HHHHTTSS--TTCCHHHHHHHHHHHHHHGG
T ss_pred cccCHHHHHHHHHHHHHhCHHH--HHHHHHHh--cCCCHHHHHHHHHHHHHhHH
Confidence 3699999999999999999653 56775555 47899999999887765554
No 78
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=28.67 E-value=1.7e+02 Score=21.15 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=42.5
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
..+|.|.+.|.+--.....++. .. ..-+...+.++...-|||..+|+-=.|.-|.+.|+...
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~-~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFR-QQ-RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHH-HC-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHh-hc-CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 3567788888864443333333 33 23345666677667789999999999999998887654
No 79
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.09 E-value=66 Score=23.99 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=26.0
Q ss_pred CCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690 136 KNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR 170 (322)
Q Consensus 136 dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr 170 (322)
+.-+-+.|-+.|++ +...|++|+.+-+.+|+.
T Consensus 41 ~g~s~~eIA~~l~i---s~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 41 EGLTNKQIADRMFL---AEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHcC
Confidence 44568999999977 789999999988887764
No 80
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=27.43 E-value=1.4e+02 Score=19.90 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=26.9
Q ss_pred CCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhc
Q 020690 136 KNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ 172 (322)
Q Consensus 136 dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~ 172 (322)
+.-+.+.|-+.||+ +...|++++.+-+.++++.-
T Consensus 30 ~g~s~~eIA~~lgi---s~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 30 LGLSYADAAAVCGC---PVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHHHHh
Confidence 34568899999976 78999999999998888643
No 81
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.40 E-value=2.3e+02 Score=21.83 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=49.1
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
..||+|=.-|.|-...+-.+++..+.. ..-+.+.++-..-||+...|+.--|.-|.+++..
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~y-Pd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLY-PDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSC-CCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhCCCHHHHHHhhccceeeecCC
Confidence 357788889999999999999988843 3345666666678999999999999999999853
No 82
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.13 E-value=1.8e+02 Score=20.47 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=42.6
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
..+|.|.+.|.+--.....++ +.. ...+...+.++...-|||..+|+.=.|.-|.+.|+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F-~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREY-AAN-KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHH-HHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCcCCHHHHHHHHHHH-Hhc-CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 356788889987444333333 333 23345566667666789999999999999998887653
No 83
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=25.05 E-value=99 Score=21.22 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=27.7
Q ss_pred CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 135 IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 135 ~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
.+.-+-+.|-+.||+ +...|++++.+-+.++++.
T Consensus 23 ~~g~s~~eIA~~lgi---s~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDV---TRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SSCCCHHHHHHHHTC---CHHHHHHHHHHHHHGGGSC
T ss_pred CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHHHH
Confidence 366788999999976 7899999998888887753
No 84
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=23.84 E-value=1.1e+02 Score=20.60 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=24.9
Q ss_pred CCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690 136 KNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169 (322)
Q Consensus 136 dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk 169 (322)
+.-+.+.|-+.||+ +...|+.|+.+-+.+++
T Consensus 25 ~g~s~~eIA~~l~i---s~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 25 QDKTTKEIASELFI---SEKTVRNHISNAMQKLG 55 (74)
T ss_dssp TTCCHHHHHHHHTS---CHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCC---CHHHHHHHHHHHHHHHC
Confidence 34478999999976 78899999998777665
No 85
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.78 E-value=92 Score=25.04 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCC-----CCCChHHHHHhhCCCCCCH--HHHHHHhhhh
Q 020690 121 QLHKRFVDAVAHLGI-----KNAVPKTIMQLMSVDGLTR--ENVASHLQKY 164 (322)
Q Consensus 121 ELH~rFVeAV~qLG~-----dkAtPK~ILelM~V~GLTr--enVkSHLQKY 164 (322)
+|++-|..+. .+|. ++-.|+.|.+.|+.+.-+. ..+++|=+||
T Consensus 43 DLy~Ly~~V~-~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~ 92 (122)
T 2eqy_A 43 DLFQLNKLVA-EEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERI 92 (122)
T ss_dssp CHHHHHHHHH-HHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHH-HccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 7999998855 5552 3457999999999975331 2444444444
No 86
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=23.14 E-value=81 Score=24.38 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhCC----CCCChHHHHHhhCCCCCCHHHHHHHhhh-hHhhh
Q 020690 120 PQLHKRFVDAVAHLGI----KNAVPKTIMQLMSVDGLTRENVASHLQK-YRLYL 168 (322)
Q Consensus 120 ~ELH~rFVeAV~qLG~----dkAtPK~ILelM~V~GLTrenVkSHLQK-YRl~l 168 (322)
-+|++-|..+...=|. ++-.|+.|.+.|+++.- .+++..|.+ |..+|
T Consensus 44 vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~--~~~~~~lk~~Y~k~L 95 (107)
T 2lm1_A 44 LDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS--KSVGATLKAHYERIL 95 (107)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC--HHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC--CcHHHHHHHHHHHHh
Confidence 3799999886544342 23469999999999753 344455544 44333
No 87
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.70 E-value=87 Score=25.67 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHH-HHHHhhhhHhhhhhh
Q 020690 124 KRFVDAVAHLGIKNAVPKTIMQLMSVDGLTREN-VASHLQKYRLYLKRM 171 (322)
Q Consensus 124 ~rFVeAV~qLG~dkAtPK~ILelM~V~GLTren-VkSHLQKYRl~lkr~ 171 (322)
++.++++. .+..+.+.|...+++++++... |-.||..-...+++.
T Consensus 14 e~Ii~lL~---~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~ 59 (105)
T 2gmg_A 14 EKIIELLL---EGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKRE 59 (105)
T ss_dssp HHHHHHTT---TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHH---cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcC
Confidence 44555543 4778999999999999888888 999999988888763
No 88
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=22.40 E-value=59 Score=26.18 Aligned_cols=46 Identities=28% Similarity=0.345 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHhCC-----CCCChHHHHHhhCCCCCCHHHHHHHhhh-hHhhh
Q 020690 120 PQLHKRFVDAVAHLGI-----KNAVPKTIMQLMSVDGLTRENVASHLQK-YRLYL 168 (322)
Q Consensus 120 ~ELH~rFVeAV~qLG~-----dkAtPK~ILelM~V~GLTrenVkSHLQK-YRl~l 168 (322)
-+|++-|..+. .+|. ++-.|+.|.+.|+++.- ..++..|.+ |..+|
T Consensus 51 lDL~~Ly~~V~-~~GG~~~V~~~~~W~~Va~~lg~~~~--~s~~~~Lk~~Y~k~L 102 (125)
T 2cxy_A 51 LDLFRLYVCVK-EIGGLAQVNKNKKWRELATNLNVGTS--SSAASSLKKQYIQYL 102 (125)
T ss_dssp CCHHHHHHHHH-HHTSHHHHHHHTCHHHHHHHTTSCSS--HHHHHHHHHHHHHHT
T ss_pred ecHHHHHHHHH-HcCCHHHhcccCcHHHHHHHhCCCCC--CcHHHHHHHHHHHHH
Confidence 37999998855 5552 23479999999999853 345555554 44433
No 89
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=22.36 E-value=2.1e+02 Score=20.07 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=42.4
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
..++.|.+.|.+--.....+++ .. ...+...+.++...-|||..+|+.=.|.-|.+.+|...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~-~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFD-AN-AYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHH-HC-SSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-cC-CCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 3467888888874444333333 33 23345566666666789999999999999998887543
No 90
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=22.26 E-value=36 Score=25.91 Aligned_cols=41 Identities=10% Similarity=-0.089 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCC----CCChHHHHHhhCCCCCCHHHHHHHhhh
Q 020690 121 QLHKRFVDAVAHLGIK----NAVPKTIMQLMSVDGLTRENVASHLQK 163 (322)
Q Consensus 121 ELH~rFVeAV~qLG~d----kAtPK~ILelM~V~GLTrenVkSHLQK 163 (322)
+|++-|..+...=|.+ +-.++.|.+.|+++.-+ .+++.|++
T Consensus 37 DL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~--~~~~~Lk~ 81 (96)
T 2jxj_A 37 DLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK--GTGSLLKS 81 (96)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS--CHHHHHHH
T ss_pred cHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC--cHHHHHHH
Confidence 7899998865544433 35799999999986433 34455554
No 91
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=22.22 E-value=2.1e+02 Score=20.05 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=40.8
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcC
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG 173 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ 173 (322)
..++.|.+.|.+--.....++ +.. ...+...+.++...-|||..+|+.=.|.-|.+.++...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F-~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYF-DIN-NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHH-HHC-SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHH-HHC-CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 457888889987444433333 333 12233445555555578999999999999998887653
No 92
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=21.69 E-value=2.1e+02 Score=22.04 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=22.4
Q ss_pred CCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 137 NAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 137 kAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
.-+-+.|-+.||+ |...|++++.+=+.+|++.
T Consensus 39 ~~s~~EIA~~lgi---S~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 39 DYTLEEVGKQFDV---TRERIRQIEAKALRKLRHP 70 (99)
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHHHHHHH
Confidence 4566667666655 7888888887777777653
No 93
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=21.59 E-value=1.2e+02 Score=24.89 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=38.9
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171 (322)
Q Consensus 110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~ 171 (322)
..+|.|-.+|.+--.....++.. . ..-++..+.++-..-|||..+|+-=-|.-|.+.||.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~-~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE-H-SKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH-C-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45678888998744433333333 2 234455666665556899999999999999888775
No 94
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=21.13 E-value=2.3e+02 Score=20.16 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=43.8
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcCCCCC
Q 020690 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGG 177 (322)
Q Consensus 112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ls~~ 177 (322)
+|.|.++|.+-......++.... .......+.++...-|||..+|+.=-|.-|.+.++...+...
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~~~ 67 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSE 67 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTT-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCCCc
Confidence 46677788764443333333223 233456666666667899999999999999999988865544
No 95
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.34 E-value=1.1e+02 Score=20.20 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=24.1
Q ss_pred CCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690 137 NAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169 (322)
Q Consensus 137 kAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk 169 (322)
.-+-+.|-+.|++ +...|++|+.+-+.+++
T Consensus 13 g~s~~eIA~~l~i---s~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 13 GYTNHGISEKLHI---SIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp SCCSHHHHHHTCS---CHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCC---CHHHHHHHHHHHHHHHC
Confidence 3457899999976 78999999998777665
Done!