Query 020693
Match_columns 322
No_of_seqs 197 out of 827
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:48:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.6 2.3E-16 7.7E-21 131.7 6.2 67 256-322 17-86 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 2.1E-16 7.1E-21 124.0 2.9 56 267-322 7-62 (82)
3 1a0a_A BHLH, protein (phosphat 99.6 6.2E-16 2.1E-20 116.5 2.3 54 267-320 3-62 (63)
4 1an4_A Protein (upstream stimu 99.6 1.2E-15 4.2E-20 114.1 3.3 55 266-320 5-64 (65)
5 4h10_B Circadian locomoter out 99.5 4.8E-15 1.7E-19 114.6 4.9 56 267-322 9-64 (71)
6 4h10_A ARYL hydrocarbon recept 99.5 2E-15 6.8E-20 117.0 1.0 52 265-317 8-63 (73)
7 1hlo_A Protein (transcription 99.4 8.3E-14 2.8E-18 108.3 4.6 54 268-322 14-69 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 1E-13 3.5E-18 108.1 4.7 54 268-322 4-59 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.6E-13 5.6E-18 109.1 4.7 53 268-321 8-63 (88)
10 3u5v_A Protein MAX, transcript 99.4 2.7E-13 9.4E-18 105.7 5.3 55 268-322 7-64 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 8.7E-12 3E-16 97.8 5.5 53 269-322 4-59 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.0 2.9E-10 9.9E-15 86.9 5.0 52 268-320 14-67 (68)
13 4f3l_A Mclock, circadian locom 99.0 4.6E-10 1.6E-14 105.6 6.2 52 266-318 12-64 (361)
14 2ql2_B Neurod1, neurogenic dif 99.0 7.7E-10 2.6E-14 82.6 5.6 52 269-320 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 8.7E-10 3E-14 105.1 3.5 53 264-317 11-67 (387)
16 4ath_A MITF, microphthalmia-as 98.5 9.5E-08 3.2E-12 76.0 5.1 44 278-321 4-50 (83)
17 2lfh_A DNA-binding protein inh 98.5 4E-08 1.4E-12 75.6 2.8 45 272-317 20-67 (68)
18 4aya_A DNA-binding protein inh 97.9 2.3E-05 8E-10 63.9 6.8 47 274-321 33-82 (97)
19 3muj_A Transcription factor CO 38.3 40 0.0014 28.9 4.8 35 280-315 95-133 (138)
20 1xkm_B Distinctin chain B; por 22.3 87 0.003 19.5 3.0 20 302-321 3-22 (26)
21 1m2x_A Class B carbapenemase B 20.6 43 0.0015 28.0 2.0 31 290-321 191-221 (223)
22 2wt7_A Proto-oncogene protein 20.5 1.4E+02 0.0048 21.5 4.5 13 278-290 18-30 (63)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.63 E-value=2.3e-16 Score=131.65 Aligned_cols=67 Identities=30% Similarity=0.454 Sum_probs=48.0
Q ss_pred cccccccCCCcCCCcchhHHHHHHHHHHHHHHHHhcCCCCCC---CCChhhHHHHHHHHHHHHHHHHHhC
Q 020693 256 YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEVL 322 (322)
Q Consensus 256 ~~~~rakr~~a~~~Hs~aERrRRekInerf~~Lr~LVP~~~K---~~dKAsIL~eAI~YIk~LQ~qVq~L 322 (322)
..+..+++.+.+.+|+++||+||++||++|..|++|||.|.+ .++|++||+.||+||++||.+++.|
T Consensus 17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l 86 (118)
T 4ati_A 17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA 86 (118)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888999999999999999999999999999863 2489999999999999999998864
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.60 E-value=2.1e-16 Score=124.04 Aligned_cols=56 Identities=27% Similarity=0.445 Sum_probs=51.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693 267 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322 (322)
Q Consensus 267 ~~~Hs~aERrRRekInerf~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qVq~L 322 (322)
..+|+++||+||++||++|.+|++|||++...++|++||++||+||++||.+++.|
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L 62 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999998433599999999999999999999875
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.56 E-value=6.2e-16 Score=116.47 Aligned_cols=54 Identities=30% Similarity=0.441 Sum_probs=48.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCCCCCC------CChhhHHHHHHHHHHHHHHHHH
Q 020693 267 TNSHSLAERVRREKISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSLQQQVE 320 (322)
Q Consensus 267 ~~~Hs~aERrRRekInerf~~Lr~LVP~~~K~------~dKAsIL~eAI~YIk~LQ~qVq 320 (322)
..+|+++||+||++||..|..|+.|||.+.+. .+||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 35999999999999999999999999976331 3699999999999999999875
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=1.2e-15 Score=114.08 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=49.5
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHhcCCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 020693 266 ATNSHSLAERVRREKISERMRLLQELVPGCNK-----ITGKAVMLDEIINYVQSLQQQVE 320 (322)
Q Consensus 266 a~~~Hs~aERrRRekInerf~~Lr~LVP~~~K-----~~dKAsIL~eAI~YIk~LQ~qVq 320 (322)
....|+++||+||++||+.|..|++|||.|.. .++|++||+.||+||++||.+++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45699999999999999999999999999862 24999999999999999998764
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=4.8e-15 Score=114.63 Aligned_cols=56 Identities=20% Similarity=0.385 Sum_probs=49.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693 267 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322 (322)
Q Consensus 267 ~~~Hs~aERrRRekInerf~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qVq~L 322 (322)
..+|+++||+||++||++|..|+.|||.+....||++||+.||+||+.||.++.-|
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 45999999999999999999999999976533599999999999999999987543
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.51 E-value=2e-15 Score=117.01 Aligned_cols=52 Identities=31% Similarity=0.521 Sum_probs=47.3
Q ss_pred CcCCCcchhHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHHH
Q 020693 265 QATNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQ 317 (322)
Q Consensus 265 ~a~~~Hs~aERrRRekInerf~~Lr~LVP~~----~K~~dKAsIL~eAI~YIk~LQ~ 317 (322)
+++..|+++||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.||.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 4456999999999999999999999999987 575 999999999999999973
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=8.3e-14 Score=108.25 Aligned_cols=54 Identities=28% Similarity=0.506 Sum_probs=50.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693 268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEVL 322 (322)
Q Consensus 268 ~~Hs~aERrRRekInerf~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qVq~L 322 (322)
..|+..||+||.+||+.|..|+.|||.+ .| .+|+.||..||+||+.||.+++.|
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L 69 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999987 46 499999999999999999999865
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.42 E-value=1e-13 Score=108.09 Aligned_cols=54 Identities=28% Similarity=0.506 Sum_probs=49.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693 268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEVL 322 (322)
Q Consensus 268 ~~Hs~aERrRRekInerf~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qVq~L 322 (322)
..|+..||+||++||+.|..|+++||.+ .| .+|++||..||+||++||.+++.|
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l 59 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999985 66 499999999999999999887754
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.40 E-value=1.6e-13 Score=109.14 Aligned_cols=53 Identities=26% Similarity=0.471 Sum_probs=48.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHh
Q 020693 268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEV 321 (322)
Q Consensus 268 ~~Hs~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq~ 321 (322)
..|+..||+||++||++|..|+++||.+ .| .+|++||..||+||+.|+.+.+.
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K-~sK~~iL~~A~~YI~~L~~~~~~ 63 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEK-APKVVILKKATAYILSVQAEEQK 63 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTT-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999986 46 49999999999999999988764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.39 E-value=2.7e-13 Score=105.67 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=47.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693 268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEVL 322 (322)
Q Consensus 268 ~~Hs~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq~L 322 (322)
..|+..||+||+.||++|..|+.+||.+ .|...|+.||..||+||++||++|+++
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~ 64 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRER 64 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999953 343368899999999999999999975
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.23 E-value=8.7e-12 Score=97.80 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=48.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693 269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEVL 322 (322)
Q Consensus 269 ~Hs~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq~L 322 (322)
.|+..||+||..|++.|..|+++||.+ .| ..|+.||..||+||+.|+.+.+.|
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l 59 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999965 45 489999999999999999988653
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.00 E-value=2.9e-10 Score=86.95 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=47.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 020693 268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVE 320 (322)
Q Consensus 268 ~~Hs~aERrRRekInerf~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qVq 320 (322)
..|+..||+|+..||+.|..|+++||.. .|+ +|+.||..||+||+.||..++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence 4799999999999999999999999964 454 899999999999999998765
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.97 E-value=4.6e-10 Score=105.58 Aligned_cols=52 Identities=19% Similarity=0.430 Sum_probs=41.6
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHhcCC-CCCCCCChhhHHHHHHHHHHHHHHH
Q 020693 266 ATNSHSLAERVRREKISERMRLLQELVP-GCNKITGKAVMLDEIINYVQSLQQQ 318 (322)
Q Consensus 266 a~~~Hs~aERrRRekInerf~~Lr~LVP-~~~K~~dKAsIL~eAI~YIk~LQ~q 318 (322)
...+|+++||+||++||+.|..|+.||| ...|+ ||++||..||+||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhh
Confidence 3458999999999999999999999999 44575 9999999999999999865
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.96 E-value=7.7e-10 Score=82.62 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=46.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 020693 269 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQQVE 320 (322)
Q Consensus 269 ~Hs~aERrRRekInerf~~Lr~LVP~~~--K~~dKAsIL~eAI~YIk~LQ~qVq 320 (322)
.|+..||+|+..||+.|..|+.+||... ++..|+.+|..||+||..||..++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999653 234999999999999999999875
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.85 E-value=8.7e-10 Score=105.11 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=47.3
Q ss_pred CCcCCCcchhHHHHHHHHHHHHHHHHhcCC----CCCCCCChhhHHHHHHHHHHHHHH
Q 020693 264 GQATNSHSLAERVRREKISERMRLLQELVP----GCNKITGKAVMLDEIINYVQSLQQ 317 (322)
Q Consensus 264 ~~a~~~Hs~aERrRRekInerf~~Lr~LVP----~~~K~~dKAsIL~eAI~YIk~LQ~ 317 (322)
++++.+|+.+||+||++||+.|..|+.||| ...|+ ||++||..||+|||.|+.
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhc
Confidence 334569999999999999999999999999 45675 999999999999999974
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.51 E-value=9.5e-08 Score=76.02 Aligned_cols=44 Identities=27% Similarity=0.505 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCCCCC---CCChhhHHHHHHHHHHHHHHHHHh
Q 020693 278 REKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEV 321 (322)
Q Consensus 278 RekInerf~~Lr~LVP~~~K---~~dKAsIL~eAI~YIk~LQ~qVq~ 321 (322)
|..||+++..|..|||.+.. ..+|++||..||+||++||++++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r 50 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQR 50 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998643 148999999999999999987654
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.51 E-value=4e-08 Score=75.59 Aligned_cols=45 Identities=24% Similarity=0.438 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHH
Q 020693 272 LAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQ 317 (322)
Q Consensus 272 ~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~ 317 (322)
..||+|+..||+.|..||.+||.. .|+ .|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence 458999999999999999999965 454 899999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.89 E-value=2.3e-05 Score=63.87 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHh
Q 020693 274 ERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEV 321 (322)
Q Consensus 274 ERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq~ 321 (322)
||.|=..||+.|..||.+||.. .|+ .|.-+|..||+||+.||..++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKL-SKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKV-SKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcc-cHHHHHHHHHHHHHHHHHHHhc
Confidence 5778889999999999999965 354 8999999999999999998764
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=38.27 E-value=40 Score=28.87 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHH
Q 020693 280 KISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSL 315 (322)
Q Consensus 280 kInerf~~Lr~LVP~~----~K~~dKAsIL~eAI~YIk~L 315 (322)
.|.-.|..|+++||.- .++ -|-.||..|-+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~l-pk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERL-PKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhh-hHHHHHHHHHHHHHHH
Confidence 5788999999999953 344 6999999999999876
No 20
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=22.25 E-value=87 Score=19.51 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 020693 302 AVMLDEIINYVQSLQQQVEV 321 (322)
Q Consensus 302 AsIL~eAI~YIk~LQ~qVq~ 321 (322)
.+-|-+|-.|+.+|++.++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999988763
No 21
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=20.64 E-value=43 Score=27.96 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=22.2
Q ss_pred hcCCCCCCCCChhhHHHHHHHHHHHHHHHHHh
Q 020693 290 ELVPGCNKITGKAVMLDEIINYVQSLQQQVEV 321 (322)
Q Consensus 290 ~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qVq~ 321 (322)
.++|+-....+ ...|+.+++|++.|+++|++
T Consensus 191 ~i~pgHg~~~~-~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWKD-QRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCCS-TTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcCC-HHHHHHHHHHHHHHHHHHhc
Confidence 45666555443 56899999999999999864
No 22
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.50 E-value=1.4e+02 Score=21.49 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 020693 278 REKISERMRLLQE 290 (322)
Q Consensus 278 RekInerf~~Lr~ 290 (322)
|.+=.+.+..|+.
T Consensus 18 R~rKk~~~~~Le~ 30 (63)
T 2wt7_A 18 RNRRRELTDTLQA 30 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
Done!