BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020694
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 118/284 (41%), Gaps = 30/284 (10%)
Query: 44 YPVSVVKTRLQ--------VATKDTAE-RNAFSVIRGILRTDGIPGLYRGFGTVITGAIP 94
+P+ K RLQ V T +A+ R I ++RT+G LY G + +
Sbjct: 20 FPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNG----LVAGLQ 75
Query: 95 ARILFLTALETTKAAAFKIVEPFKLSEPAQAAIANGI-AGMTASMCAQAVFVPIDVVSQK 153
++ F + + + V+ F A I + + AG T A AV P DVV +
Sbjct: 76 RQMSF----ASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVR 131
Query: 154 LMVQGYSGHAK-YSGGLDVARKVIQSDGLRGLYRGFGLSVMTYSPSSAVWWASYGSSQRV 212
Q +G + Y ++ + + + +G+RGL++G +V + + +Y +
Sbjct: 132 FQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYD----L 187
Query: 213 IWRFLGHGTGIDDAVPSQSKIVLVQATGGLIAGATASCITTPLDTIKTRLQVMGHDRRPS 272
I L + D +P T AG + I +P+D +KTR + S
Sbjct: 188 IKDTLLKANLMTDDLP-------CHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHS 240
Query: 273 ATQVVKKLISEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKR 316
A ++ ++G + Y+G P F + +W M + YE LKR
Sbjct: 241 AGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 236 VQATGGLIAGATASCITTPLDTIKTRLQVMGHDR---RPSATQ-------VVKKLISEDG 285
V+ G A A IT PLDT K RLQ+ G + R +A+ + ++ +G
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 286 WKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAK 320
+ LY GL ++ + I Y+ +K+ K
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK 97
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 120 SEPAQAAIANGIAGMTASMCAQAVFVPIDVVSQKLMVQG----YSGHAKYSGGLDVARKV 175
S+ A + + + +AG A+ ++ PI+ V L VQ S +Y G +D ++
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 176 IQSDGLRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVIWRFLGHGTGIDDAVPSQSKIVL 235
+ G +RG +V+ Y P+ A+ +A +++ FLG G+D
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQI---FLG---GVDRHKQFWRYFAG 114
Query: 236 VQATGGLIAGATASCITTPLDTIKTRLQV---MGHDRRP--SATQVVKKLISEDGWKGLY 290
A+GG AGAT+ C PLD +TRL G +R + K+ DG +GLY
Sbjct: 115 NLASGG-AAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLY 173
Query: 291 RGL 293
+G
Sbjct: 174 QGF 176
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 39/294 (13%)
Query: 42 ALYPVSVVKTRLQV--ATKD-TAERNAFSVIRGILR---TDGIPGLYRGFGTVITGAIPA 95
A+ P+ VK LQV A+K +AE+ +I ++R G +RG + P
Sbjct: 24 AVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83
Query: 96 RILFLTALETTKAAAFKIVEPFK-LSEPAQAAIANGIAGMTASMCAQAVFV-PIDVVSQK 153
+ L + K V+ K +A+G A S+C FV P+D +
Sbjct: 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC----FVYPLDFARTR 139
Query: 154 LMVQGYSGHAK--YSGGLDVARKVIQSDGLRGLYRGFGLSVMTYSPSSAVWWASYGSSQR 211
L G A+ ++G + K+ +SDGLRGLY+GF +SV A ++ Y +++
Sbjct: 140 LAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG 199
Query: 212 VIWRFLGHGTGIDDAVPSQSKIVLVQATGGLIAGATASCITTPLDTIKTRLQVMGHDRRP 271
++ P I++ + A A ++ P DT++ R+ M R
Sbjct: 200 ML------------PDPKNVHIIVSWMIAQTVT-AVAGLVSYPFDTVRRRM--MMQSGRK 244
Query: 272 SATQVVKKLISEDGWKGLYRGLGPRFFSMSAW--------GTSMILAYEYLKRL 317
A + + D W+ + + GP+ F AW G +++ Y+ +K+
Sbjct: 245 GADIMYTGTV--DCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKF 296
>pdb|2EG1|A Chain A, The Crystal Structure Of Pii Protein
pdb|2EG2|A Chain A, The Crystal Structure Of Pii Protein
pdb|2Z0G|A Chain A, The Crystal Structure Of Pii Protein
pdb|2Z0G|B Chain B, The Crystal Structure Of Pii Protein
pdb|2Z0G|C Chain C, The Crystal Structure Of Pii Protein
pdb|2Z0G|D Chain D, The Crystal Structure Of Pii Protein
Length = 112
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 113 IVEPFKLSEPAQAAIANGIAGMTAS 137
I++PFKL E A + GI GMT +
Sbjct: 7 IIKPFKLDEVKDALVEIGIGGMTVT 31
>pdb|1UL3|A Chain A, Crystal Structure Of Pii From Synechocystis Sp. Pcc 6803
pdb|1UL3|B Chain B, Crystal Structure Of Pii From Synechocystis Sp. Pcc 6803
pdb|1UL3|C Chain C, Crystal Structure Of Pii From Synechocystis Sp. Pcc 6803
pdb|1UL3|D Chain D, Crystal Structure Of Pii From Synechocystis Sp. Pcc 6803
Length = 112
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 113 IVEPFKLSEPAQAAIANGIAGMTAS 137
I+ PFKL E A + GI GMT S
Sbjct: 7 IIRPFKLDEVKIALVNAGIVGMTVS 31
>pdb|3N5B|A Chain A, The Complex Of Pii And Pipx From Anabaena
Length = 112
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 113 IVEPFKLSEPAQAAIANGIAGMTAS 137
I+ PFKL E A + GI GMT S
Sbjct: 7 IIRPFKLDEVKIALVNAGIVGMTVS 31
>pdb|2JJ4|D Chain D, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|E Chain E, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|F Chain F, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2V5H|G Chain G, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|H Chain H, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|I Chain I, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|J Chain J, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|K Chain K, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|L Chain L, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2XG8|A Chain A, Structural Basis Of Gene Regulation By Protein Pii: The
Crystal Complex Of Pii And Pipx From Synechococcus
Elongatus Pcc 7942
pdb|2XG8|B Chain B, Structural Basis Of Gene Regulation By Protein Pii: The
Crystal Complex Of Pii And Pipx From Synechococcus
Elongatus Pcc 7942
pdb|2XG8|C Chain C, Structural Basis Of Gene Regulation By Protein Pii: The
Crystal Complex Of Pii And Pipx From Synechococcus
Elongatus Pcc 7942
Length = 112
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 113 IVEPFKLSEPAQAAIANGIAGMTAS 137
I+ PFKL E A + GI GMT S
Sbjct: 7 IIRPFKLDEVKIALVNAGIVGMTVS 31
>pdb|1QY7|A Chain A, The Structure Of The Pii Protein From The Cyanobacteria
Synechococcus Sp. Pcc 7942
pdb|1QY7|B Chain B, The Structure Of The Pii Protein From The Cyanobacteria
Synechococcus Sp. Pcc 7942
pdb|1QY7|C Chain C, The Structure Of The Pii Protein From The Cyanobacteria
Synechococcus Sp. Pcc 7942
Length = 112
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 113 IVEPFKLSEPAQAAIANGIAGMTAS 137
I+ PFKL E A + GI GMT S
Sbjct: 7 IIRPFKLDEVKIALVNAGIVGMTVS 31
>pdb|2XBP|A Chain A, A Novel Signal Transduction Protein Pii Variant From
Synechococcus Elongatus Pcc7942 Indicates A Two-Step
Process For Nagk Pii Complex Formation
Length = 113
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 113 IVEPFKLSEPAQAAIANGIAGMTAS 137
I+ PFKL E A + GI GMT S
Sbjct: 7 IIRPFKLDEVKIALVNAGIVGMTVS 31
>pdb|2XUL|A Chain A, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XUL|B Chain B, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XUL|C Chain C, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XUL|D Chain D, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XUL|E Chain E, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XUL|F Chain F, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XZW|A Chain A, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|B Chain B, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|C Chain C, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|D Chain D, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|E Chain E, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|F Chain F, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|G Chain G, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|H Chain H, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|I Chain I, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
Length = 115
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 113 IVEPFKLSEPAQAAIANGIAGMTAS 137
I+ PFKL E A + GI GMT S
Sbjct: 7 IIRPFKLDEVKIALVNAGIVGMTVS 31
>pdb|4AFF|A Chain A, High Resolution Structure Of A Pii Mutant (I86n) Protein
In Complex With Atp, Mg And Flc
Length = 116
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 113 IVEPFKLSEPAQAAIANGIAGMTAS 137
I+ PFKL E A + GI GMT S
Sbjct: 7 IIRPFKLDEVKIALVNAGIVGMTVS 31
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
pdb|2OHY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
Length = 539
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 103 LETTKAAAFKIVEPFKLSEPAQAAIANGIAGMTASMCAQAVFVPIDVVSQ-----KLMVQ 157
+ET + A + +EP +L A+ NG +GMT + + V ++ Q L+++
Sbjct: 179 VETAQVLAERGIEPLELRFKEGLALINGTSGMTG-LGSLVVGRALEQAQQAEIVTALLIE 237
Query: 158 GYSGHAK--YSGGLDVAR----KVIQSDGLRGLYRGFGLSV 192
G + G D+AR ++ + +R L RG GL+V
Sbjct: 238 AVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTV 278
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
pdb|2QVE|B Chain B, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
Length = 526
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 103 LETTKAAAFKIVEPFKLSEPAQAAIANGIAGMTASMCAQAVFVPIDVVSQ-----KLMVQ 157
+ET + A + +EP +L A+ NG +GMT + + V ++ Q L+++
Sbjct: 166 VETAQVLAERGIEPLELRFKEGLALINGTSGMTG-LGSLVVGRALEQAQQAEIVTALLIE 224
Query: 158 GYSGHAK--YSGGLDVAR----KVIQSDGLRGLYRGFGLSV 192
G + G D+AR ++ + +R L RG GL+V
Sbjct: 225 AVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTV 265
>pdb|3KDY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
pdb|3KDY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
Length = 537
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 103 LETTKAAAFKIVEPFKLSEPAQAAIANGIAGMTASMCAQAVFVPIDVVSQ-----KLMVQ 157
+ET + A + +EP +L A+ NG +GMT + + V ++ Q L+++
Sbjct: 177 VETAQVLAERGIEPLELRFKEGLALINGTSGMTG-LGSLVVGRALEQAQQAEIVTALLIE 235
Query: 158 GYSGHAK--YSGGLDVAR----KVIQSDGLRGLYRGFGLSV 192
G + G D+AR ++ + +R L RG GL+V
Sbjct: 236 AVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTV 276
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam
pdb|2RJR|B Chain B, Substrate Mimic Bound To Sgtam
pdb|2RJS|A Chain A, Sgtam Bound To Substrate Mimic
pdb|2RJS|B Chain B, Sgtam Bound To Substrate Mimic
Length = 537
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 103 LETTKAAAFKIVEPFKLSEPAQAAIANGIAGMTASMCAQAVFVPIDVVSQ-----KLMVQ 157
+ET + A + +EP +L A+ NG +GMT + + V ++ Q L+++
Sbjct: 177 VETAQVLAERGIEPLELRFKEGLALINGTSGMTG-LGSLVVGRALEQAQQAEIVTALLIE 235
Query: 158 GYSGHAK--YSGGLDVAR----KVIQSDGLRGLYRGFGLSV 192
G + G D+AR ++ + +R L RG GL+V
Sbjct: 236 AVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTV 276
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
pdb|3KDZ|B Chain B, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
Length = 537
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 103 LETTKAAAFKIVEPFKLSEPAQAAIANGIAGMTASMCAQAVFVPIDVVSQ-----KLMVQ 157
+ET + A + +EP +L A+ NG +GMT + + V ++ Q L+++
Sbjct: 177 VETAQVLAERGIEPLELRFKEGLALINGTSGMTG-LGSLVVGRALEQAQQAEIVTALLIE 235
Query: 158 GYSGHAK--YSGGLDVAR----KVIQSDGLRGLYRGFGLSV 192
G + G D+AR ++ + +R L RG GL+V
Sbjct: 236 AVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTV 276
>pdb|3MHY|A Chain A, A New Pii Protein Structure
pdb|3MHY|B Chain B, A New Pii Protein Structure
pdb|3MHY|C Chain C, A New Pii Protein Structure
pdb|3O5T|B Chain B, Structure Of Drag-Glnz Complex With Adp
Length = 112
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 113 IVEPFKLSEPAQAAIANGIAGMTAS 137
I++PFKL E +A + GI G+T S
Sbjct: 7 IIKPFKLDEVREALTSLGIQGLTVS 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,849,606
Number of Sequences: 62578
Number of extensions: 345341
Number of successful extensions: 1170
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 23
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)