Query 020694
Match_columns 322
No_of_seqs 146 out of 1588
Neff 10.1
Searched_HMMs 13730
Date Mon Mar 25 06:49:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020694.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020694hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okca_ f.42.1.1 (A:) ADP,ATP 100.0 9E-52 6.6E-56 357.1 23.6 277 22-314 3-292 (292)
2 d1okca_ f.42.1.1 (A:) ADP,ATP 100.0 2.4E-31 1.7E-35 228.5 19.5 191 124-321 4-203 (292)
3 d1ppjg_ f.23.13.1 (G:) Ubiquin 51.9 6.4 0.00047 23.8 3.0 34 285-318 33-66 (75)
4 d1ppjg_ f.23.13.1 (G:) Ubiquin 32.6 11 0.0008 22.7 1.9 39 180-218 33-71 (75)
5 d3cx5h1 f.23.13.1 (H:2-94) Ubi 31.0 18 0.0013 22.7 2.8 34 283-316 41-74 (93)
6 d2b0ja1 a.100.1.11 (A:243-344) 22.8 85 0.0062 19.6 5.3 65 138-213 28-92 (102)
7 d1gd6a_ d.2.1.2 (A:) Lysozyme 13.7 41 0.003 22.1 1.8 17 273-289 86-102 (119)
8 d1y9ia_ a.195.1.1 (A:) Low tem 11.8 80 0.0058 21.8 3.0 46 199-250 108-153 (159)
9 d1v54l_ f.23.6.1 (L:) Mitochon 11.2 1E+02 0.0076 16.0 2.5 20 244-263 25-44 (46)
10 d1iv8a1 b.71.1.1 (A:654-720) M 9.2 26 0.0019 19.5 -0.4 11 283-293 8-18 (67)
No 1
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=100.00 E-value=9e-52 Score=357.11 Aligned_cols=277 Identities=19% Similarity=0.274 Sum_probs=243.9
Q ss_pred cCCcchhHHhhhHHhHhhhhccchhhhHHHHhhccCCC------CCCCcHHHHHHHHHhhcCccccccchhhhhhccchh
Q 020694 22 KLDKTKFYIVGAGLFTGVTVALYPVSVVKTRLQVATKD------TAERNAFSVIRGILRTDGIPGLYRGFGTVITGAIPA 95 (322)
Q Consensus 22 ~~~~~~~~~~g~~a~~~~~~~~~Pld~vk~~~q~~~~~------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~ 95 (322)
+++....+++|++|++++.+++||||+||+|+|++... ..+++.++++++++++||+++||+|+.+.+++..+.
T Consensus 3 ~~~~~~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~ 82 (292)
T d1okca_ 3 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 82 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhcc
Confidence 35567889999999999999999999999999997643 357899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHhHHHHHHHHhhhhhhchHHHHHHHHHhcCCC--CCCCcCcHHHHHH
Q 020694 96 RILFLTALETTKAAAFKIVEPFKLSEPAQAAIANGIAGMTASMCAQAVFVPIDVVSQKLMVQGYS--GHAKYSGGLDVAR 173 (322)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~--~~~~~~~~~~~~~ 173 (322)
..++|.+|+.+++.+...... ...........+++|.+|++++.++++|+|++|+|+|.+... ....+.+.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~~~ 160 (292)
T d1okca_ 83 QALNFAFKDKYKQIFLGGVDR--HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCIT 160 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCT--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHH
T ss_pred cchhHHHHHHHHHHHhccccc--ccccchhhhhhhhhhhhhhhhHHhhhhhhhhhheeeeccccccccccccccHHHHHH
Confidence 999999999999988775443 234445567778899999999999999999999999998753 4567899999999
Q ss_pred HHHHhhcccccccccchhhhcchhhhhHHHHHhHHHHHHHHHhhCCCCCCCCCCCChhHHHHHHHHHHHHHhhhHhhhcc
Q 020694 174 KVIQSDGLRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVIWRFLGHGTGIDDAVPSQSKIVLVQATGGLIAGATASCITT 253 (322)
Q Consensus 174 ~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~ 253 (322)
+++++||+++||+|+.+.+++.+++.+++|..||.+|+.+.+. ........++++.+++.+++++++
T Consensus 161 ~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-------------~~~~~~~~~~~~~~~~~~a~~~t~ 227 (292)
T d1okca_ 161 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-------------KNVHIIVSWMIAQTVTAVAGLVSY 227 (292)
T ss_dssp HHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-------------GCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhhhhccccccccceehHhhhhhhhccchhhhcccc-------------cccchHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999765332 222356678999999999999999
Q ss_pred hHHHHHHHhhccCCC-----CCCCHHHHHHHHHHhhchhhhccchhhHHHHhhhhhhHHHHHHHHH
Q 020694 254 PLDTIKTRLQVMGHD-----RRPSATQVVKKLISEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYL 314 (322)
Q Consensus 254 P~dvvktr~q~~~~~-----~~~~~~~~~~~i~~~~G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~ 314 (322)
|+||||+|||.+... .|.++++|+++++++||+++||||+.++++|.++ .+++|.+||.+
T Consensus 228 P~dvvktR~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~r~i~-~~i~~~~ye~l 292 (292)
T d1okca_ 228 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEI 292 (292)
T ss_dssp HHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHH-HHHHHHHHHTC
T ss_pred cHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhcCcCcccccHHHHHHHHHH-HHhhhhHhhcC
Confidence 999999999998654 3789999999999999999999999999999766 57899999963
No 2
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=99.97 E-value=2.4e-31 Score=228.48 Aligned_cols=191 Identities=22% Similarity=0.322 Sum_probs=170.7
Q ss_pred HHHHHHhHHHHHHHHhhhhhhchHHHHHHHHHhcCCC----CCCCcCcHHHHHHHHHHhhcccccccccchhhhcchhhh
Q 020694 124 QAAIANGIAGMTASMCAQAVFVPIDVVSQKLMVQGYS----GHAKYSGGLDVARKVIQSDGLRGLYRGFGLSVMTYSPSS 199 (322)
Q Consensus 124 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~----~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 199 (322)
.+++..+++|.+|++++.+++||||+||+|+|++... ....|++.+++++++++++|+++||+|+.+.+++..+..
T Consensus 4 ~~~~~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~ 83 (292)
T d1okca_ 4 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 83 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhccc
Confidence 5788899999999999999999999999999997653 346789999999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHhhCCCCCCCCCCCChhHHHHHHHHHHHHHhhhHhhhcchHHHHHHHhhccCCC-----CCCCHH
Q 020694 200 AVWWASYGSSQRVIWRFLGHGTGIDDAVPSQSKIVLVQATGGLIAGATASCITTPLDTIKTRLQVMGHD-----RRPSAT 274 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktr~q~~~~~-----~~~~~~ 274 (322)
+++|.+||.+++.+.+.... ...........+++|.+||.++.++++|+|++|+|+|.+... .+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~~~~~~~~~~~ 156 (292)
T d1okca_ 84 ALNFAFKDKYKQIFLGGVDR-------HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLG 156 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCT-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHH
T ss_pred chhHHHHHHHHHHHhccccc-------ccccchhhhhhhhhhhhhhhhHHhhhhhhhhhheeeeccccccccccccccHH
Confidence 99999999999998764321 333445566788999999999999999999999999997543 367999
Q ss_pred HHHHHHHHhhchhhhccchhhHHHHhhhhhhHHHHHHHHHHhhhccC
Q 020694 275 QVVKKLISEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKD 321 (322)
Q Consensus 275 ~~~~~i~~~~G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 321 (322)
+++++++++||+++||||+.+.++|.+|..++.|..||.+++.+.++
T Consensus 157 ~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 203 (292)
T d1okca_ 157 NCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 203 (292)
T ss_dssp HHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhcccc
Confidence 99999999999999999999999999999999999999999987654
No 3
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=51.88 E-value=6.4 Score=23.85 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=27.1
Q ss_pred chhhhccchhhHHHHhhhhhhHHHHHHHHHHhhh
Q 020694 285 GWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLC 318 (322)
Q Consensus 285 G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~~~~~ 318 (322)
|+...+|-+.-.+++.+|..++.+.+|+...+.-
T Consensus 33 gi~N~~RR~~~~~l~v~PPfi~~Y~iy~W~~~~~ 66 (75)
T d1ppjg_ 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHhHHhceEEcCHHHHHHHHHHHHHHHH
Confidence 4555666667778999999999999999887653
No 4
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.59 E-value=11 Score=22.74 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=29.0
Q ss_pred cccccccccchhhhcchhhhhHHHHHhHHHHHHHHHhhC
Q 020694 180 GLRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVIWRFLG 218 (322)
Q Consensus 180 G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
|+...+|-+...++..+|..++.+.+|+..++..+...+
T Consensus 33 gi~N~~RR~~~~~l~v~PPfi~~Y~iy~W~~~~~~~~~r 71 (75)
T d1ppjg_ 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKR 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHhHHhceEEcCHHHHHHHHHHHHHHHHHHHhc
Confidence 344445556667778899999999999999987766543
No 5
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.96 E-value=18 Score=22.71 Aligned_cols=34 Identities=6% Similarity=0.008 Sum_probs=28.6
Q ss_pred hhchhhhccchhhHHHHhhhhhhHHHHHHHHHHh
Q 020694 283 EDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKR 316 (322)
Q Consensus 283 ~~G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~~~ 316 (322)
+.|+...+|-+.-.+++.+|..++.+.+|+..++
T Consensus 41 ~~~ifN~~RR~r~q~lyv~PPfi~~Y~iy~Wa~~ 74 (93)
T d3cx5h1 41 HNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNE 74 (93)
T ss_dssp TTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHhhhhhceEEcchHHHHHHHHHHHHH
Confidence 3466777888888899999999999999998776
No 6
>d2b0ja1 a.100.1.11 (A:243-344) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=22.83 E-value=85 Score=19.63 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=45.7
Q ss_pred HhhhhhhchHHHHHHHHHhcCCCCCCCcCcHHHHHHHHHHhhcccccccccchhhhcchhhhhHHHHHhHHHHHHH
Q 020694 138 MCAQAVFVPIDVVSQKLMVQGYSGHAKYSGGLDVARKVIQSDGLRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVI 213 (322)
Q Consensus 138 ~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (322)
++..++-.|-|.+. +|+. -..+.+.....++|+.|+-+-+.|.++-.......+....|.+...+
T Consensus 28 ~~t~IlgAP~~mie--~qa~---------etL~tma~L~e~~Gi~~m~kaldp~aL~~sa~sM~~~~~~e~L~~al 92 (102)
T d2b0ja1 28 AVTKILGAPADFAQ--MMAD---------EALTQIHNLMKEKGIANMEEALDPAALLGTADSMCFGPLAEILPTAL 92 (102)
T ss_dssp HHHTTSCCCHHHHH--HHHH---------HHHHHHHHHHHHHCGGGHHHHSCGGGGGGTGGGGCSGGGTTHHHHHH
T ss_pred HHHHHHcChHHHHH--HHHH---------HHHHHHHHHHHHhhHHHHHHhcCHHHHHhHHHhccchHHHHhHHHHH
Confidence 44557788999884 4443 24677888899999999999888887766655555555556555544
No 7
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=13.65 E-value=41 Score=22.09 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhchhhh
Q 020694 273 ATQVVKKLISEDGWKGL 289 (322)
Q Consensus 273 ~~~~~~~i~~~~G~~~~ 289 (322)
-..|+++|++++|+.+.
T Consensus 86 di~CAk~I~~~~G~~aW 102 (119)
T d1gd6a_ 86 AAKCAKKIYKRHRFDAW 102 (119)
T ss_dssp HHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHcCcchh
Confidence 46889999999987664
No 8
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=11.82 E-value=80 Score=21.78 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=29.8
Q ss_pred hhHHHHHhHHHHHHHHHhhCCCCCCCCCCCChhHHHHHHHHHHHHHhhhHhh
Q 020694 199 SAVWWASYGSSQRVIWRFLGHGTGIDDAVPSQSKIVLVQATGGLIAGATASC 250 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~ 250 (322)
..+.|..+|..|....++.... .+.....++..+++|+.|++.+.+
T Consensus 108 gf~~Fr~~D~~Kpg~i~~ld~~------~~g~~gv~lDDivagi~Aa~~srl 153 (159)
T d1y9ia_ 108 GFTNYGYIDKVKPGILAKLNEH------DGIAVHTFLDDIVGAIAAAAASRL 153 (159)
T ss_dssp GHHHHHHHHHHCCTHHHHTTCC------CSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHhc------CCCCccchHHHHHHHHHHHHHHHH
Confidence 4566778888887777665221 222233577788888888877654
No 9
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.18 E-value=1e+02 Score=16.02 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=13.6
Q ss_pred HhhhHhhhcchHHHHHHHhh
Q 020694 244 AGATASCITTPLDTIKTRLQ 263 (322)
Q Consensus 244 ag~~~~~~~~P~dvvktr~q 263 (322)
+-.+.+-+..||-+||.++-
T Consensus 25 ~~~fGsgfa~PF~ivRhqLl 44 (46)
T d1v54l_ 25 TLFFGSGFAAPFFIVRHQLL 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccchHHHHHHHHh
Confidence 33455556689999998763
No 10
>d1iv8a1 b.71.1.1 (A:654-720) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=9.18 E-value=26 Score=19.52 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=8.7
Q ss_pred hhchhhhccch
Q 020694 283 EDGWKGLYRGL 293 (322)
Q Consensus 283 ~~G~~~~yrG~ 293 (322)
++|+.||.||-
T Consensus 8 ~~glcgf~r~~ 18 (67)
T d1iv8a1 8 EEGLCGFIRFN 18 (67)
T ss_dssp CTTEEEEEETT
T ss_pred hhcceeEEecC
Confidence 67888888874
Done!