Query 020697
Match_columns 322
No_of_seqs 203 out of 797
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.1 1.8E-10 3.8E-15 87.1 7.2 48 250-297 2-49 (65)
2 KOG3584 cAMP response element 99.1 1.2E-10 2.5E-15 111.5 6.8 53 245-297 283-335 (348)
3 PF00170 bZIP_1: bZIP transcri 99.0 8.1E-10 1.8E-14 83.3 6.9 48 250-297 2-49 (64)
4 KOG4343 bZIP transcription fac 99.0 1.1E-09 2.4E-14 111.6 9.1 52 246-297 274-325 (655)
5 PF07716 bZIP_2: Basic region 99.0 2.7E-09 5.9E-14 78.3 8.1 47 250-297 2-48 (54)
6 KOG4005 Transcription factor X 99.0 2.2E-09 4.8E-14 100.5 8.6 61 235-297 53-113 (292)
7 KOG0709 CREB/ATF family transc 98.7 9.8E-09 2.1E-13 103.5 4.9 51 247-297 245-295 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 97.6 5.6E-06 1.2E-10 66.9 -2.6 50 248-297 25-74 (92)
9 KOG0837 Transcriptional activa 97.3 0.00082 1.8E-08 64.3 7.3 62 236-297 188-250 (279)
10 KOG4571 Activating transcripti 96.7 0.0048 1E-07 59.8 7.7 51 250-300 223-276 (294)
11 KOG3119 Basic region leucine z 96.7 0.0066 1.4E-07 58.1 8.4 52 246-297 187-238 (269)
12 KOG4196 bZIP transcription fac 95.1 0.099 2.1E-06 45.6 7.5 50 248-297 48-97 (135)
13 KOG3863 bZIP transcription fac 94.8 0.024 5.2E-07 59.8 3.4 43 255-297 492-534 (604)
14 KOG1414 Transcriptional activa 91.1 0.033 7.1E-07 56.0 -2.0 57 238-294 270-326 (395)
15 KOG1414 Transcriptional activa 86.0 0.044 9.6E-07 55.1 -5.1 52 246-297 147-202 (395)
16 PF01166 TSC22: TSC-22/dip/bun 78.3 3.7 8.1E-05 31.4 4.0 24 274-297 21-44 (59)
17 PF05812 Herpes_BLRF2: Herpesv 77.2 3.7 8E-05 35.4 4.1 26 272-297 1-26 (118)
18 PHA03155 hypothetical protein; 76.5 3.3 7.1E-05 35.5 3.6 23 275-297 9-31 (115)
19 PF07558 Shugoshin_N: Shugoshi 76.5 3 6.4E-05 30.1 2.9 42 256-298 4-45 (46)
20 PHA03162 hypothetical protein; 75.2 1.9 4.2E-05 37.8 2.0 27 271-297 10-36 (135)
21 KOG3119 Basic region leucine z 69.9 21 0.00046 34.3 7.9 55 243-297 187-245 (269)
22 PF04977 DivIC: Septum formati 59.0 27 0.00058 26.2 5.2 27 271-297 21-47 (80)
23 PRK00888 ftsB cell division pr 58.5 24 0.00052 29.4 5.2 25 273-297 33-57 (105)
24 PF03980 Nnf1: Nnf1 ; InterPr 54.8 24 0.00053 28.9 4.6 27 272-298 78-104 (109)
25 PF13863 DUF4200: Domain of un 54.4 97 0.0021 25.5 8.2 46 252-297 59-104 (126)
26 KOG4797 Transcriptional regula 53.7 18 0.0004 31.0 3.7 26 272-297 72-97 (123)
27 PF01486 K-box: K-box region; 52.7 59 0.0013 26.2 6.5 47 253-299 49-100 (100)
28 TIGR02209 ftsL_broad cell divi 44.7 74 0.0016 24.5 5.7 27 271-297 28-54 (85)
29 PF12808 Mto2_bdg: Micro-tubul 44.5 64 0.0014 24.1 4.9 49 253-301 1-50 (52)
30 KOG1318 Helix loop helix trans 43.4 67 0.0015 33.2 6.6 29 273-301 289-319 (411)
31 PRK10884 SH3 domain-containing 43.1 1.2E+02 0.0026 28.2 7.8 17 279-295 130-146 (206)
32 KOG4068 Uncharacterized conser 43.0 9.6 0.00021 34.7 0.5 22 81-102 61-82 (174)
33 PRK13169 DNA replication intia 42.4 42 0.0009 28.5 4.2 27 272-298 27-53 (110)
34 PF14197 Cep57_CLD_2: Centroso 41.9 1.3E+02 0.0029 23.3 6.6 41 254-294 27-67 (69)
35 PF14077 WD40_alt: Alternative 40.6 23 0.0005 26.0 2.1 21 274-294 18-38 (48)
36 smart00243 GAS2 Growth-Arrest- 40.2 16 0.00034 29.2 1.2 12 119-130 55-66 (73)
37 PF13851 GAS: Growth-arrest sp 40.1 1.7E+02 0.0038 26.9 8.3 45 253-297 72-116 (201)
38 PF07047 OPA3: Optic atrophy 3 40.1 56 0.0012 28.2 4.8 23 273-295 111-133 (134)
39 cd07429 Cby_like Chibby, a nuc 39.7 48 0.001 28.2 4.1 15 283-297 81-95 (108)
40 PF06785 UPF0242: Uncharacteri 39.1 1.1E+02 0.0023 31.3 7.0 26 270-295 197-222 (401)
41 PF06698 DUF1192: Protein of u 38.6 50 0.0011 25.2 3.7 22 276-297 23-44 (59)
42 KOG4005 Transcription factor X 37.8 1.4E+02 0.0029 29.2 7.2 26 272-297 94-120 (292)
43 PF06305 DUF1049: Protein of u 37.1 47 0.001 24.5 3.4 12 282-293 56-67 (68)
44 KOG2829 E2F-like protein [Tran 36.9 80 0.0017 31.5 5.7 34 247-288 134-167 (326)
45 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.3 2.2E+02 0.0047 24.2 7.8 46 252-297 83-128 (132)
46 PF08563 P53_TAD: P53 transact 36.2 25 0.00053 22.7 1.4 19 80-98 4-22 (25)
47 PF06156 DUF972: Protein of un 36.0 60 0.0013 27.3 4.2 25 273-297 28-52 (107)
48 PF12709 Kinetocho_Slk19: Cent 34.2 1E+02 0.0022 25.4 5.0 24 274-297 49-72 (87)
49 PF08232 Striatin: Striatin fa 34.2 1.8E+02 0.0039 25.2 6.9 41 257-297 15-55 (134)
50 PF12999 PRKCSH-like: Glucosid 33.1 2.5E+02 0.0053 25.9 7.9 32 266-297 138-169 (176)
51 PF14645 Chibby: Chibby family 32.4 71 0.0015 27.2 4.1 17 281-297 78-94 (116)
52 cd08531 SAM_PNT-ERG_FLI-1 Ster 32.3 25 0.00053 27.8 1.2 18 116-133 40-57 (75)
53 KOG0288 WD40 repeat protein Ti 32.1 1.7E+02 0.0037 30.5 7.4 25 273-297 47-71 (459)
54 PF08172 CASP_C: CASP C termin 31.6 82 0.0018 30.2 4.8 20 112-132 15-34 (248)
55 KOG4571 Activating transcripti 31.5 2.9E+02 0.0062 27.5 8.5 49 249-297 227-278 (294)
56 KOG1103 Predicted coiled-coil 31.1 1.1E+02 0.0025 31.4 5.9 45 250-297 111-155 (561)
57 PF08781 DP: Transcription fac 30.3 2.1E+02 0.0045 25.5 6.8 28 268-295 16-46 (142)
58 cd08533 SAM_PNT-ETS-1,2 Steril 30.0 29 0.00062 27.3 1.2 16 117-132 39-54 (71)
59 cd08757 SAM_PNT_ESE Sterile al 30.0 28 0.0006 26.8 1.1 17 116-132 38-54 (68)
60 PF02183 HALZ: Homeobox associ 30.0 1.1E+02 0.0024 21.9 4.1 21 277-297 15-35 (45)
61 PRK13729 conjugal transfer pil 29.9 1.9E+02 0.0041 30.6 7.4 24 274-297 97-120 (475)
62 COG5509 Uncharacterized small 29.7 84 0.0018 24.4 3.6 23 275-297 26-48 (65)
63 cd08540 SAM_PNT-ERG Sterile al 29.5 30 0.00065 27.4 1.3 18 117-134 41-58 (75)
64 TIGR02894 DNA_bind_RsfA transc 29.2 1.7E+02 0.0037 26.6 6.1 29 269-297 106-134 (161)
65 cd08203 SAM_PNT Sterile alpha 28.5 31 0.00067 26.3 1.2 17 116-132 36-52 (66)
66 PRK13922 rod shape-determining 28.5 1.9E+02 0.0041 27.3 6.7 13 285-297 97-109 (276)
67 PF05103 DivIVA: DivIVA protei 28.2 94 0.002 25.6 4.1 24 274-297 25-48 (131)
68 PF07716 bZIP_2: Basic region 27.4 2.4E+02 0.0052 20.3 8.0 26 271-296 29-54 (54)
69 PF08614 ATG16: Autophagy prot 27.4 1.1E+02 0.0024 27.6 4.8 24 277-300 161-184 (194)
70 smart00340 HALZ homeobox assoc 27.2 1.3E+02 0.0027 21.9 3.9 23 278-300 9-31 (44)
71 KOG4343 bZIP transcription fac 26.9 79 0.0017 34.0 4.1 29 271-299 306-334 (655)
72 PF10473 CENP-F_leu_zip: Leuci 26.9 3.2E+02 0.007 24.1 7.4 48 250-297 28-75 (140)
73 PF05377 FlaC_arch: Flagella a 26.8 1.2E+02 0.0025 23.0 3.9 21 277-297 10-30 (55)
74 PHA02675 ORF104 fusion protein 26.6 3.7E+02 0.008 22.2 7.7 50 247-296 31-80 (90)
75 PF04999 FtsL: Cell division p 26.3 2E+02 0.0042 22.9 5.5 23 275-297 43-65 (97)
76 KOG0709 CREB/ATF family transc 26.2 1.6E+02 0.0034 31.1 6.0 52 246-297 248-309 (472)
77 PF13499 EF-hand_7: EF-hand do 25.9 50 0.0011 23.7 1.8 10 119-128 55-64 (66)
78 PF14811 TPD: Protein of unkno 25.8 74 0.0016 28.2 3.2 46 91-136 7-52 (139)
79 PF10482 CtIP_N: Tumour-suppre 25.7 2.8E+02 0.006 24.2 6.5 29 269-297 91-119 (120)
80 cd05030 calgranulins Calgranul 25.6 38 0.00082 26.7 1.2 30 87-131 49-78 (88)
81 COG5562 Phage envelope protein 25.5 33 0.00071 30.4 0.9 17 119-135 87-106 (137)
82 COG1792 MreC Cell shape-determ 25.4 1.1E+02 0.0024 29.7 4.6 24 274-297 83-106 (284)
83 PF01166 TSC22: TSC-22/dip/bun 25.0 1.2E+02 0.0027 23.3 3.8 23 275-297 15-37 (59)
84 PF02370 M: M protein repeat; 24.6 1.3E+02 0.0028 18.7 3.1 17 277-293 4-20 (21)
85 KOG0837 Transcriptional activa 24.5 2.9E+02 0.0063 27.2 7.1 29 273-301 240-268 (279)
86 cd04405 RhoGAP_BRCC3-like RhoG 24.4 36 0.00078 32.6 1.0 37 86-133 1-37 (235)
87 PF06156 DUF972: Protein of un 24.3 1.2E+02 0.0026 25.6 4.0 24 274-297 22-45 (107)
88 KOG3335 Predicted coiled-coil 23.2 2.1E+02 0.0045 26.6 5.6 26 272-297 111-136 (181)
89 COG4279 Uncharacterized conser 22.9 57 0.0012 31.8 2.1 21 47-67 160-195 (266)
90 TIGR02010 IscR iron-sulfur clu 22.8 48 0.001 28.0 1.4 29 91-131 106-134 (135)
91 KOG0044 Ca2+ sensor (EF-Hand s 22.8 75 0.0016 29.4 2.8 41 73-128 129-171 (193)
92 PF13094 CENP-Q: CENP-Q, a CEN 22.7 4E+02 0.0086 23.1 7.2 40 258-297 46-85 (160)
93 TIGR02750 TraN_Ftype type-F co 22.6 57 0.0012 35.0 2.2 26 30-61 529-554 (572)
94 PRK14877 conjugal transfer mat 22.4 58 0.0013 36.5 2.2 29 30-64 948-976 (1062)
95 PF06005 DUF904: Protein of un 22.3 1.7E+02 0.0037 22.9 4.3 16 282-297 40-55 (72)
96 cd08532 SAM_PNT-PDEF-like Ster 22.3 44 0.00096 26.5 1.0 52 80-132 4-59 (76)
97 cd00213 S-100 S-100: S-100 dom 22.2 86 0.0019 24.0 2.7 28 86-128 48-75 (88)
98 PF15397 DUF4618: Domain of un 22.2 3.5E+02 0.0076 26.3 7.3 32 266-297 192-223 (258)
99 PF01475 FUR: Ferric uptake re 22.1 88 0.0019 25.5 2.8 33 90-136 25-61 (120)
100 PRK05849 hypothetical protein; 21.9 63 0.0014 35.9 2.4 20 117-136 500-519 (783)
101 PRK05759 F0F1 ATP synthase sub 21.4 4.9E+02 0.011 22.1 7.4 47 249-295 31-77 (156)
102 PF06311 NumbF: NUMB domain; 21.2 29 0.00063 28.6 -0.2 20 70-89 11-30 (88)
103 PRK12355 conjugal transfer mat 21.1 64 0.0014 34.5 2.2 26 30-61 515-540 (558)
104 PF09726 Macoilin: Transmembra 21.0 3.3E+02 0.0071 30.0 7.5 19 279-297 543-561 (697)
105 PF11500 Cut12: Spindle pole b 20.6 6.3E+02 0.014 22.8 8.2 49 249-297 80-128 (152)
106 TIGR00219 mreC rod shape-deter 20.5 1.6E+02 0.0035 28.5 4.6 21 277-297 87-107 (283)
107 PF11559 ADIP: Afadin- and alp 20.3 5E+02 0.011 22.2 7.3 42 256-297 48-89 (151)
108 KOG0163 Myosin class VI heavy 20.3 2.8E+02 0.006 31.6 6.7 35 258-292 960-995 (1259)
109 PF03986 Autophagy_N: Autophag 20.0 51 0.0011 29.3 1.0 15 116-131 23-37 (145)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.13 E-value=1.8e-10 Score=87.08 Aligned_cols=48 Identities=52% Similarity=0.721 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 250 ~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.++|+.+|+++||+||++||.||++|+.+||.++..|+.+|..|+.++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~ 49 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEI 49 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999988
No 2
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.11 E-value=1.2e-10 Score=111.47 Aligned_cols=53 Identities=36% Similarity=0.567 Sum_probs=49.5
Q ss_pred cchhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 245 DVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 245 ~~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
...|+...||+-|++||||+|+.||+|||+|+++||++|+.||..|.-|-+++
T Consensus 283 ~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEEL 335 (348)
T KOG3584|consen 283 QGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEEL 335 (348)
T ss_pred ccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHH
Confidence 34677889999999999999999999999999999999999999999998887
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.02 E-value=8.1e-10 Score=83.33 Aligned_cols=48 Identities=48% Similarity=0.747 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 250 ~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+..++.+|+++||+||++||.||++|+++||.+|..|+.+|..|+.++
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKEL 49 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999887
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.00 E-value=1.1e-09 Score=111.64 Aligned_cols=52 Identities=44% Similarity=0.634 Sum_probs=48.6
Q ss_pred chhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 246 VVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 246 ~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+|.++-||+.|||||||||..||+|||+|+..||.++..|.+||+.|++++
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~EN 325 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKEN 325 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667889999999999999999999999999999999999999999999887
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.98 E-value=2.7e-09 Score=78.28 Aligned_cols=47 Identities=51% Similarity=0.742 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 250 ~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.++++.+|. +||+||++||.|||+|+.+||.+|..|+.+|..|..++
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i 48 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEI 48 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888 99999999999999999999999999999999999887
No 6
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.95 E-value=2.2e-09 Score=100.53 Aligned_cols=61 Identities=38% Similarity=0.511 Sum_probs=56.1
Q ss_pred CCCCCccCCCcchhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 235 TPGRKRVASGDVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 235 ~~~rkR~~~~~~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+.|||++.+++ ..+||-+||++|||.+|+-+|.|||+.++++|.++.+|.+||+.|..++
T Consensus 53 ~~~rKr~RL~HL--S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en 113 (292)
T KOG4005|consen 53 QPKRKRRRLDHL--SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNEN 113 (292)
T ss_pred chHHHHHhhccc--CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999887 6889999999999999999999999999999999999999999887665
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.73 E-value=9.8e-09 Score=103.45 Aligned_cols=51 Identities=35% Similarity=0.599 Sum_probs=47.9
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 247 VEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 247 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.|+.+-||.||+|||.+||+.||+|||+|++.||.+|....+||++|++++
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV 295 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKV 295 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHH
Confidence 456777999999999999999999999999999999999999999999988
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.57 E-value=5.6e-06 Score=66.95 Aligned_cols=50 Identities=30% Similarity=0.452 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 248 EKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 248 e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+...-|..||..|||.+|+.||.||..++.+||.++..|..+.+.|..++
T Consensus 25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~ 74 (92)
T PF03131_consen 25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQEL 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556889999999999999999999999999999988777666665554
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.26 E-value=0.00082 Score=64.27 Aligned_cols=62 Identities=31% Similarity=0.343 Sum_probs=46.8
Q ss_pred CCCCccCCCcchhhhHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 236 PGRKRVASGDVVEKTVERRQKR-MIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 236 ~~rkR~~~~~~~e~~~err~rR-~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|+++-..+.-.+|..+..|..| ..+||++|.+||+||-.++..||.+|..|+.+|..|-..+
T Consensus 188 ~~~~~pispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l 250 (279)
T KOG0837|consen 188 PELKEPISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASEL 250 (279)
T ss_pred cccCCCCCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 4556554433344445555444 6799999999999999999999999999999888776544
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.75 E-value=0.0048 Score=59.85 Aligned_cols=51 Identities=33% Similarity=0.458 Sum_probs=42.3
Q ss_pred hHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh
Q 020697 250 TVERRQKR-MIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR--AEV 300 (322)
Q Consensus 250 ~~err~rR-~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~--~E~ 300 (322)
..+|+.+| .++|..+|.|=|+||++-.+.|+-++..|+.+|++||.+. +|+
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler 276 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER 276 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 5667778999999999999999999999999999999988 554
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.72 E-value=0.0066 Score=58.07 Aligned_cols=52 Identities=35% Similarity=0.490 Sum_probs=45.4
Q ss_pred chhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 246 VVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 246 ~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..|+++.+-..|..||=++|++||.+.|.-..+...+|..|+.||+.|+.++
T Consensus 187 ~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v 238 (269)
T KOG3119|consen 187 PVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQV 238 (269)
T ss_pred chhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677789999999999999999999999999999999999998
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=95.12 E-value=0.099 Score=45.63 Aligned_cols=50 Identities=26% Similarity=0.447 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 248 EKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 248 e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|-...|..||-+|||==|+-+|-|+-..-++||++...|..+.+.|+.++
T Consensus 48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~ 97 (135)
T KOG4196|consen 48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEEN 97 (135)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777789999999999999999999999987776666666666655
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=94.76 E-value=0.024 Score=59.83 Aligned_cols=43 Identities=37% Similarity=0.512 Sum_probs=39.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 255 QKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 255 ~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.||.=|||.+|+++|+||-.-|..||.+|..|..|-++|.++.
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er 534 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER 534 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566699999999999999999999999999999999988866
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=91.10 E-value=0.033 Score=55.96 Aligned_cols=57 Identities=35% Similarity=0.466 Sum_probs=48.3
Q ss_pred CCccCCCcchhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 238 RKRVASGDVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLR 294 (322)
Q Consensus 238 rkR~~~~~~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~ 294 (322)
.+..+...+.++.++++.+-+++||.+|-++|.|||.++..|+.+...+..+|..|.
T Consensus 270 ~~~~~s~~~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 270 TGGVRSRTVDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred cccccccccCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 444444445566788886679999999999999999999999999999999999988
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=86.05 E-value=0.044 Score=55.05 Aligned_cols=52 Identities=31% Similarity=0.324 Sum_probs=44.8
Q ss_pred chhhhHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 020697 246 VVEKTVERRQKRMIKNRESAAR---SRARKQAYTQELENKVSRLE-EENERLRRQR 297 (322)
Q Consensus 246 ~~e~~~err~rR~ikNReSA~r---SR~RKkay~~eLE~kv~~Le-~EN~~L~~~~ 297 (322)
+-.+.+.|+..|..+|+.+|.+ +|.||+.|+..|+.+|+.|+ .+|..|..++
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~i 202 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQI 202 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccc
Confidence 3446789999999999999999 99999999999999999999 7666655543
No 16
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.34 E-value=3.7 Score=31.39 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..+.+|+.+++.|+.||.-|+...
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457889999999999999998765
No 17
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=77.18 E-value=3.7 Score=35.40 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|..-+++|++++..|+-||..|++++
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl 26 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKL 26 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999998
No 18
>PHA03155 hypothetical protein; Provisional
Probab=76.50 E-value=3.3 Score=35.52 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
-+++|++++..|+-||..|++++
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999987
No 19
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=76.46 E-value=3 Score=30.05 Aligned_cols=42 Identities=45% Similarity=0.420 Sum_probs=14.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 256 KRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRA 298 (322)
Q Consensus 256 rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~~ 298 (322)
++...|++=|+..-.. ...+.+||.++..|..||..|+.++.
T Consensus 4 k~~~qn~~laK~Ns~l-~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 4 KYSRQNRELAKRNSAL-SIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHH-HhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 4455566665544333 35689999999999999999998764
No 20
>PHA03162 hypothetical protein; Provisional
Probab=75.24 E-value=1.9 Score=37.79 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 271 RKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 271 RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+++.-+++|++++..|+-||..|++++
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999998
No 21
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=69.91 E-value=21 Score=34.29 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=37.3
Q ss_pred CCcchhhhHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 243 SGDVVEKTVERRQKR----MIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 243 ~~~~~e~~~err~rR----~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..+..++....|++| +.|-|.+++.--..-+..+.+||++...|+.++++|++++
T Consensus 187 ~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 187 PVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred chhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444444444443 4466666665556666778899999999998888888887
No 22
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=59.03 E-value=27 Score=26.25 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 271 RKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 271 RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..+..+.+|+.+++.|+.+|.+|+.++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557788888888888888887776
No 23
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.49 E-value=24 Score=29.36 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
++.+.+++.+++.|+.+|+.|+.++
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554
No 24
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=54.79 E-value=24 Score=28.86 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLRRQRA 298 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~~~~~ 298 (322)
|+.+++.|+.++..++.+|..|..++.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999874
No 25
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=54.38 E-value=97 Score=25.52 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=34.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 252 ERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 252 err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+.+..|-++.-+.+.+.+..|.+-+..|..++..|..++..|...+
T Consensus 59 ~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 59 EAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666777777777888888888888888888888776
No 26
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=53.69 E-value=18 Score=31.04 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
=|+.+.+||++++.|++||.-|+.-.
T Consensus 72 Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 72 LKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34678899999999999998888744
No 27
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.67 E-value=59 Score=26.25 Aligned_cols=47 Identities=38% Similarity=0.532 Sum_probs=30.7
Q ss_pred HHHHHHHHhHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 253 RRQKRMIKNRESA-ARSRARKQA----YTQELENKVSRLEEENERLRRQRAE 299 (322)
Q Consensus 253 rr~rR~ikNReSA-~rSR~RKka----y~~eLE~kv~~Le~EN~~L~~~~~E 299 (322)
+.+..++++=+.| .+-|.||.. .+..|..++..|.++|..|+.++.|
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444433 334445443 5677888999999999999988743
No 28
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=44.71 E-value=74 Score=24.47 Aligned_cols=27 Identities=19% Similarity=0.248 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 271 RKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 271 RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.....+..++.+++.++.||.+|+.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888888888888877
No 29
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=44.50 E-value=64 Score=24.10 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 020697 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR-AEVI 301 (322)
Q Consensus 253 rr~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~-~E~~ 301 (322)
|.+-|+.-=--.-+-.|.+...--.....++..|+.||..|+.++ .+.+
T Consensus 1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
No 30
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=43.42 E-value=67 Score=33.19 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhh
Q 020697 273 QAYTQELENKVSRLEEENERLRRQR--AEVI 301 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~~--~E~~ 301 (322)
.+...+++.+.+.|+..|.+|..++ +|.+
T Consensus 289 ~q~~~E~~~rqk~le~~n~~L~~rieeLk~~ 319 (411)
T KOG1318|consen 289 LQRARELENRQKKLESTNQELALRIEELKSE 319 (411)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 3345566667777888888888877 4444
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.05 E-value=1.2e+02 Score=28.21 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020697 279 LENKVSRLEEENERLRR 295 (322)
Q Consensus 279 LE~kv~~Le~EN~~L~~ 295 (322)
++..++.|++||++|++
T Consensus 130 ~~~~~~~L~~~n~~L~~ 146 (206)
T PRK10884 130 SDSVINGLKEENQKLKN 146 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444433
No 32
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.02 E-value=9.6 Score=34.70 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.1
Q ss_pred ccccccccccHHHHHHHHhhcc
Q 020697 81 TLAQDLSNKTVDEVWKDIRQKK 102 (322)
Q Consensus 81 tLp~tLs~KTVDEVWrdI~~~~ 102 (322)
+|-|.||.--|||||.++.+.+
T Consensus 61 ~l~R~Ls~~~i~~Il~~l~k~g 82 (174)
T KOG4068|consen 61 KLQRRLSQEFIDEILEELEKKG 82 (174)
T ss_pred HHhccCCHHHHHHHHHHHHHcc
Confidence 4567999999999999999875
No 33
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=42.38 E-value=42 Score=28.55 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLRRQRA 298 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~~~~~ 298 (322)
=|.++.+|..+...|+-||..|++.+.
T Consensus 27 LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 27 LKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788888888877773
No 34
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.89 E-value=1.3e+02 Score=23.33 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=25.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 254 RQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLR 294 (322)
Q Consensus 254 r~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~ 294 (322)
..+++.+-|.+|.++=..+-.-+.+|-.++..|++|++.++
T Consensus 27 ~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 27 ENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777777766655656666666666666665554
No 35
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=40.65 E-value=23 Score=26.01 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLR 294 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~ 294 (322)
..+.+||.+|..|++-|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 456788888888888877764
No 36
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=40.23 E-value=16 Score=29.19 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.7
Q ss_pred chhhHHHHHHHh
Q 020697 119 GEMTLEDFLIKA 130 (322)
Q Consensus 119 GEMTLEdFLvrA 130 (322)
|=||||+||.|-
T Consensus 55 GW~tL~~fL~kh 66 (73)
T smart00243 55 GWETLDEYLLKH 66 (73)
T ss_pred cHHHHHHHHHhC
Confidence 789999999984
No 37
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=40.08 E-value=1.7e+02 Score=26.87 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=35.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 253 rr~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..+++.+++-++-..+=..-++.+..++.++..|+.|++.|..++
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~ 116 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRF 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777888888999999998888888776
No 38
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=40.07 E-value=56 Score=28.17 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLRR 295 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~ 295 (322)
++.+++||.++..|+.+.+++..
T Consensus 111 ~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 111 QERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888877654
No 39
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=39.66 E-value=48 Score=28.21 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q 020697 283 VSRLEEENERLRRQR 297 (322)
Q Consensus 283 v~~Le~EN~~L~~~~ 297 (322)
...|++||+-|+-++
T Consensus 81 ~~~LeEENNlLklKi 95 (108)
T cd07429 81 NQQLEEENNLLKLKI 95 (108)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678899999988877
No 40
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.13 E-value=1.1e+02 Score=31.26 Aligned_cols=26 Identities=38% Similarity=0.471 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 270 ARKQAYTQELENKVSRLEEENERLRR 295 (322)
Q Consensus 270 ~RKkay~~eLE~kv~~Le~EN~~L~~ 295 (322)
.+|++|+..||.||.+|.-|...|-+
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999888777643
No 41
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=38.65 E-value=50 Score=25.24 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020697 276 TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+++|+.++..|+.|..+++..+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777776655
No 42
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=37.76 E-value=1.4e+02 Score=29.22 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.3
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAY-TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 272 Kkay-~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+-+| +.+|+.+-..|..||+.|+++.
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 6789999999999998888765
No 43
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.06 E-value=47 Score=24.54 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 020697 282 KVSRLEEENERL 293 (322)
Q Consensus 282 kv~~Le~EN~~L 293 (322)
+++.+++|+++|
T Consensus 56 ~l~~le~e~~~l 67 (68)
T PF06305_consen 56 ELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHhc
Confidence 445555555444
No 44
>KOG2829 consensus E2F-like protein [Transcription]
Probab=36.87 E-value=80 Score=31.47 Aligned_cols=34 Identities=38% Similarity=0.446 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 247 VEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEE 288 (322)
Q Consensus 247 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~ 288 (322)
+++.++.|.+||.+ -++|++|++||..++..++.
T Consensus 134 v~~le~Er~k~~er--------I~kK~a~lqEl~~q~~~fkn 167 (326)
T KOG2829|consen 134 VSELEEERKKRMER--------IKKKAAQLQELIEQVSAFKN 167 (326)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555543 36788999999998876553
No 45
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.30 E-value=2.2e+02 Score=24.20 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=33.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 252 ERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 252 err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+.....+..++.|+..-+..=..-+.+++.++..|...|.-|..++
T Consensus 83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 83 ESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456667777777777666777778888888888888888775
No 46
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=36.19 E-value=25 Score=22.70 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.7
Q ss_pred cccccccccccHHHHHHHH
Q 020697 80 LTLAQDLSNKTVDEVWKDI 98 (322)
Q Consensus 80 ltLp~tLs~KTVDEVWrdI 98 (322)
.++-.+|||.|-++.|+-+
T Consensus 4 ~~~~~PLSQeTF~~LW~~l 22 (25)
T PF08563_consen 4 ESPELPLSQETFSDLWNLL 22 (25)
T ss_dssp SS-----STCCHHHHHHTS
T ss_pred cCCCCCccHHHHHHHHHhc
Confidence 4455689999999999854
No 47
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.97 E-value=60 Score=27.32 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|.++.+|..+-..|+-||..|+..+
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665
No 48
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=34.24 E-value=1e+02 Score=25.41 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..+.+|+.++..|..||++|+.++
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777888887776
No 49
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=34.16 E-value=1.8e+02 Score=25.20 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 257 RMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 257 R~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|.++.|..+--.|+==|+.|..||-+...++.-|..|.+++
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrI 55 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRI 55 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777888877777777777777766
No 50
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=33.10 E-value=2.5e+02 Score=25.88 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 266 ARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 266 ~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+.-=++|++|+.+.+.+...++.+..+|+.++
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei 169 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEI 169 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567888888888888888888888777
No 51
>PF14645 Chibby: Chibby family
Probab=32.38 E-value=71 Score=27.22 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020697 281 NKVSRLEEENERLRRQR 297 (322)
Q Consensus 281 ~kv~~Le~EN~~L~~~~ 297 (322)
.+...|++||+-|+-++
T Consensus 78 ~~n~~L~EENN~Lklk~ 94 (116)
T PF14645_consen 78 KENQQLEEENNLLKLKI 94 (116)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34677888888887776
No 52
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=32.29 E-value=25 Score=27.84 Aligned_cols=18 Identities=44% Similarity=0.470 Sum_probs=14.4
Q ss_pred cccchhhHHHHHHHhccc
Q 020697 116 TSLGEMTLEDFLIKAGAV 133 (322)
Q Consensus 116 ~TLGEMTLEdFLvrAGVV 133 (322)
..|=.||.|||+.+|+-.
T Consensus 40 k~LC~lt~edF~~~~~~~ 57 (75)
T cd08531 40 KELCKMTKEDFLRLTSAY 57 (75)
T ss_pred HHHHcCCHHHHHHHcCCC
Confidence 356789999999998654
No 53
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=32.10 E-value=1.7e+02 Score=30.55 Aligned_cols=25 Identities=44% Similarity=0.575 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
++.+.++|.++..|++||..|..+.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999887765
No 54
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.56 E-value=82 Score=30.15 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=13.1
Q ss_pred hhhccccchhhHHHHHHHhcc
Q 020697 112 QARQTSLGEMTLEDFLIKAGA 132 (322)
Q Consensus 112 ~~rQ~TLGEMTLEdFLvrAGV 132 (322)
...|..|=+ .||+=|.++-.
T Consensus 15 ~~~~~~L~~-kLE~DL~~~~~ 34 (248)
T PF08172_consen 15 LEEQKELNA-KLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHH-HHHHHHHHHhc
Confidence 345556666 78888887743
No 55
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=31.54 E-value=2.9e+02 Score=27.51 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=25.3
Q ss_pred hhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 249 KTVERRQKRMI---KNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 249 ~~~err~rR~i---kNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..-.||+.+++ |-|+.-++.++-=---++.||++..+|+..-.+|.+++
T Consensus 227 ~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREI 278 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666665 44443333333333345556666666666555555555
No 56
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.12 E-value=1.1e+02 Score=31.37 Aligned_cols=45 Identities=27% Similarity=0.456 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 250 ~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..|+|++.+|+.-|.- |+++-.|..+-..-+..|++|-++|.+++
T Consensus 111 AaE~khrKli~dLE~d---Re~haqdaaeGDDlt~~LEKEReqL~QQi 155 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEAD---REAHAQDAAEGDDLTAHLEKEREQLQQQI 155 (561)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhhhhhccchHHHHHHHHHHHHHHHH
Confidence 4566677777665543 44555566655556667777777776665
No 57
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=30.25 E-value=2.1e+02 Score=25.48 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 020697 268 SRARKQAYTQELENKVSR---LEEENERLRR 295 (322)
Q Consensus 268 SR~RKkay~~eLE~kv~~---Le~EN~~L~~ 295 (322)
.-++|++|+++|..+... |-..|..+..
T Consensus 16 rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~ 46 (142)
T PF08781_consen 16 RIKKKKEQLQELILQQVAFKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346799999999976654 4445555543
No 58
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=30.00 E-value=29 Score=27.26 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.4
Q ss_pred ccchhhHHHHHHHhcc
Q 020697 117 SLGEMTLEDFLIKAGA 132 (322)
Q Consensus 117 TLGEMTLEdFLvrAGV 132 (322)
-|=.||.|||+.||+.
T Consensus 39 ~LC~ls~edF~~~~p~ 54 (71)
T cd08533 39 DLCALGKERFLELAPD 54 (71)
T ss_pred HHHcCCHHHHHHHcCC
Confidence 3567999999999975
No 59
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=30.00 E-value=28 Score=26.83 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=14.6
Q ss_pred cccchhhHHHHHHHhcc
Q 020697 116 TSLGEMTLEDFLIKAGA 132 (322)
Q Consensus 116 ~TLGEMTLEdFLvrAGV 132 (322)
..|=.||.|||+.||+.
T Consensus 38 k~LC~ms~edF~~~~p~ 54 (68)
T cd08757 38 QTLCSMTEEEFREAAGS 54 (68)
T ss_pred HHHHcCCHHHHHHHcCC
Confidence 45778999999999976
No 60
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.96 E-value=1.1e+02 Score=21.94 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020697 277 QELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+.|..+...|..||+.|+.++
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888999888887
No 61
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.86 E-value=1.9e+02 Score=30.55 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+...++|.+++.|+.||+.|+.++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 445688999999999999999997
No 62
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.68 E-value=84 Score=24.41 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
-+.+|+.++.-|+.|.++|+.+.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998877
No 63
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=29.51 E-value=30 Score=27.44 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=14.4
Q ss_pred ccchhhHHHHHHHhcccc
Q 020697 117 SLGEMTLEDFLIKAGAVN 134 (322)
Q Consensus 117 TLGEMTLEdFLvrAGVV~ 134 (322)
-|=.||.|||+.+|+...
T Consensus 41 ~LC~LskedF~~~ap~~~ 58 (75)
T cd08540 41 ELCKMTKDDFQRLTPSYN 58 (75)
T ss_pred HHHhCCHHHHHHHcCCCC
Confidence 366899999999997543
No 64
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.20 E-value=1.7e+02 Score=26.63 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 269 RARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 269 R~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..+.+..+.+|..++..|+.||++|.+++
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888888888887766
No 65
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=28.52 E-value=31 Score=26.28 Aligned_cols=17 Identities=41% Similarity=0.475 Sum_probs=14.5
Q ss_pred cccchhhHHHHHHHhcc
Q 020697 116 TSLGEMTLEDFLIKAGA 132 (322)
Q Consensus 116 ~TLGEMTLEdFLvrAGV 132 (322)
..|=.||.|||+.|++.
T Consensus 36 ~~Lc~ls~edF~~~~p~ 52 (66)
T cd08203 36 KELCLLTKEDFLRRAPS 52 (66)
T ss_pred HHHHhCCHHHHHHHcCC
Confidence 45678999999999976
No 66
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=28.51 E-value=1.9e+02 Score=27.27 Aligned_cols=13 Identities=54% Similarity=0.680 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 020697 285 RLEEENERLRRQR 297 (322)
Q Consensus 285 ~Le~EN~~L~~~~ 297 (322)
.|++||++|++.+
T Consensus 97 ~l~~en~~L~~lL 109 (276)
T PRK13922 97 QLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHh
Confidence 5566666666544
No 67
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=28.20 E-value=94 Score=25.59 Aligned_cols=24 Identities=29% Similarity=0.572 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.|+..|...+..|..+|..|+.++
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~ 48 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEI 48 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777776665
No 68
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=27.44 E-value=2.4e+02 Score=20.30 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 271 RKQAYTQELENKVSRLEEENERLRRQ 296 (322)
Q Consensus 271 RKkay~~eLE~kv~~Le~EN~~L~~~ 296 (322)
--...+..|+.+...|..++..|..+
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567899999999999999999864
No 69
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.39 E-value=1.1e+02 Score=27.55 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 020697 277 QELENKVSRLEEENERLRRQRAEV 300 (322)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~~~~E~ 300 (322)
..||.++..|+.||..|-.+.+++
T Consensus 161 ~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 161 NMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777666433
No 70
>smart00340 HALZ homeobox associated leucin zipper.
Probab=27.24 E-value=1.3e+02 Score=21.90 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 020697 278 ELENKVSRLEEENERLRRQRAEV 300 (322)
Q Consensus 278 eLE~kv~~Le~EN~~L~~~~~E~ 300 (322)
-|..=.+.|.+||.+|++++.|-
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678889999999988443
No 71
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=26.94 E-value=79 Score=33.99 Aligned_cols=29 Identities=34% Similarity=0.371 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 271 RKQAYTQELENKVSRLEEENERLRRQRAE 299 (322)
Q Consensus 271 RKkay~~eLE~kv~~Le~EN~~L~~~~~E 299 (322)
-=++.++.|+.+.+.|+.||..|++++.+
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~ 334 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDE 334 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34678999999999999999999999943
No 72
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.90 E-value=3.2e+02 Score=24.13 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 250 ~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.-+|.+.-...|++.+-.--.-+|+.+..|+.++..+..+...|..++
T Consensus 28 ~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 28 SLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777889998888888899999999998888777777766655
No 73
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.84 E-value=1.2e+02 Score=23.02 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020697 277 QELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..|+..+..++.||++|+..+
T Consensus 10 ~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777776665
No 74
>PHA02675 ORF104 fusion protein; Provisional
Probab=26.61 E-value=3.7e+02 Score=22.22 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 247 VEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQ 296 (322)
Q Consensus 247 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~ 296 (322)
.++..++|+.++++.=.---.++..--+.+..||...+.|.+-.-.|-++
T Consensus 31 ~~esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KK 80 (90)
T PHA02675 31 SKESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTK 80 (90)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34678899999887766666666665566666666666555554444444
No 75
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.25 E-value=2e+02 Score=22.86 Aligned_cols=23 Identities=48% Similarity=0.666 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.++.|+.+...|+.||.+|+-+.
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~ 65 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEI 65 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 38889999999999999998877
No 76
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=26.19 E-value=1.6e+02 Score=31.05 Aligned_cols=52 Identities=29% Similarity=0.321 Sum_probs=41.3
Q ss_pred chhhhHHHHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 020697 246 VVEKTVERRQKRMIKNRESAARSRARKQAY----------TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 246 ~~e~~~err~rR~ikNReSA~rSR~RKkay----------~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
-+-|.+.|+.|-|+.-.||-++....=+.. =.+|-++|.+|+.+|..|-.++
T Consensus 248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL 309 (472)
T KOG0709|consen 248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQL 309 (472)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHH
Confidence 345788888888888888888887654432 2578899999999999998887
No 77
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=25.89 E-value=50 Score=23.66 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=8.4
Q ss_pred chhhHHHHHH
Q 020697 119 GEMTLEDFLI 128 (322)
Q Consensus 119 GEMTLEdFLv 128 (322)
|.++++||+.
T Consensus 55 G~i~~~Ef~~ 64 (66)
T PF13499_consen 55 GRISFDEFLN 64 (66)
T ss_dssp SSEEHHHHHH
T ss_pred CCCcHHHHhc
Confidence 8899999973
No 78
>PF14811 TPD: Protein of unknown function TPD sequence-motif
Probab=25.84 E-value=74 Score=28.15 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHHhccccCC
Q 020697 91 VDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNES 136 (322)
Q Consensus 91 VDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAGVV~e~ 136 (322)
-.|||+.|..+..-+.-...........+|..||+.|...||.--+
T Consensus 7 ~~ev~~~~~~D~~ysp~~~~~~~~~g~e~E~~L~~~L~~~gi~f~t 52 (139)
T PF14811_consen 7 AYEVQQCIYNDNQYSPLADQIRHAIGQEYEVILEKYLRKLGIPFLT 52 (139)
T ss_pred HHHHHHHHhcccccCcHHHHHHHHhHHHHHHHHHHHHHHCCCcccc
Confidence 3688888876542222223445667889999999999999997644
No 79
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=25.66 E-value=2.8e+02 Score=24.16 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 269 RARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 269 R~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
...--.++-.|..+...|++||..|+.++
T Consensus 91 ~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 91 HLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34455678899999999999999998874
No 80
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=25.64 E-value=38 Score=26.71 Aligned_cols=30 Identities=23% Similarity=0.626 Sum_probs=21.0
Q ss_pred ccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHHhc
Q 020697 87 SNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAG 131 (322)
Q Consensus 87 s~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAG 131 (322)
+..-|+++|+++-... =|.+|.+||+.-.+
T Consensus 49 ~~~~v~~i~~~~D~d~---------------dG~I~f~eF~~~~~ 78 (88)
T cd05030 49 NQKAIDKIFEDLDTNQ---------------DGQLSFEEFLVLVI 78 (88)
T ss_pred CHHHHHHHHHHcCCCC---------------CCcCcHHHHHHHHH
Confidence 4677888888774432 18899999986443
No 81
>COG5562 Phage envelope protein [General function prediction only]
Probab=25.47 E-value=33 Score=30.41 Aligned_cols=17 Identities=41% Similarity=0.689 Sum_probs=14.5
Q ss_pred chhhHHHH---HHHhccccC
Q 020697 119 GEMTLEDF---LIKAGAVNE 135 (322)
Q Consensus 119 GEMTLEdF---LvrAGVV~e 135 (322)
||.|.|+| |.+|||.|=
T Consensus 87 GqttF~ef~~~la~AGVfrw 106 (137)
T COG5562 87 GQTTFEEFCSALAEAGVFRW 106 (137)
T ss_pred CCccHHHHHHHHHhCCeEEE
Confidence 88899999 579999884
No 82
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=25.43 E-value=1.1e+02 Score=29.72 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+-++.+..++..|++||++|+..+
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788999999999999987
No 83
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=25.01 E-value=1.2e+02 Score=23.27 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
-++.|-.++.+|++.|.+|..++
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999988
No 84
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=24.57 E-value=1.3e+02 Score=18.70 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020697 277 QELENKVSRLEEENERL 293 (322)
Q Consensus 277 ~eLE~kv~~Le~EN~~L 293 (322)
.+||.+...|++|.+.+
T Consensus 4 k~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 57899999999888765
No 85
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=24.54 E-value=2.9e+02 Score=27.21 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020697 273 QAYTQELENKVSRLEEENERLRRQRAEVI 301 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~~~E~~ 301 (322)
|.|..+|+..+..|.+.-++++++++|-+
T Consensus 240 k~~n~~L~~~l~~l~~~v~e~k~~V~~hi 268 (279)
T KOG0837|consen 240 KIYNRDLASELSKLKEQVAELKQKVMEHI 268 (279)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999987765
No 86
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.36 E-value=36 Score=32.62 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=22.6
Q ss_pred cccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHHhccc
Q 020697 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAV 133 (322)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAGVV 133 (322)
||++-|+||||++.-.. =+.-+|==-||+-|--+.|.
T Consensus 1 ls~~~v~evW~~~tl~~-----------Ll~l~glp~Ld~vl~~~~~~ 37 (235)
T cd04405 1 LSPEVVEEIWKEQTLIR-----------LLQLVGLPLLEELLDPALVN 37 (235)
T ss_pred CCHHHHHHHHHHHHHHH-----------HHHHcCCccHHHHhcccCCC
Confidence 57788999999874321 23334444567666654444
No 87
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.29 E-value=1.2e+02 Score=25.56 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+-+.+|...+..|.+||..|+.++
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999998
No 88
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.23 E-value=2.1e+02 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
....+++||.++..++.....|..++
T Consensus 111 lr~~~~~l~~~i~~~~~~~~~L~~~l 136 (181)
T KOG3335|consen 111 LRLKVEKLENAIAELTKFFSQLHSKL 136 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777777776555
No 89
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=22.95 E-value=57 Score=31.77 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=17.2
Q ss_pred CCCCcHHHHHhhh---------------hccccCCC
Q 020697 47 LGSMNLDELLKSV---------------WTAENNFH 67 (322)
Q Consensus 47 fgSMNmDElLknI---------------wtaEe~q~ 67 (322)
|---||+||+..+ |++||.+.
T Consensus 160 lRG~~k~eL~a~l~~~~~~~~~~~~~~~~~~ee~~~ 195 (266)
T COG4279 160 LRGRNKEELLALLRRQLVAAEPETNDITWAAEEAEQ 195 (266)
T ss_pred ecCCCHHHHHHHHhhccccccccccccccccccccc
Confidence 4557999999999 88888775
No 90
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=22.84 E-value=48 Score=28.03 Aligned_cols=29 Identities=17% Similarity=0.508 Sum_probs=21.7
Q ss_pred HHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHHhc
Q 020697 91 VDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAG 131 (322)
Q Consensus 91 VDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAG 131 (322)
+..+|.+++.. -...|..+||+|++..+.
T Consensus 106 ~~~~~~~~~~~------------~~~~L~~~TL~dl~~~~~ 134 (135)
T TIGR02010 106 THDLWADLSKH------------IRDYLESISLADLVNQQN 134 (135)
T ss_pred HHHHHHHHHHH------------HHHHHhcCcHHHHHhhcc
Confidence 67888887553 356789999999986554
No 91
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=22.76 E-value=75 Score=29.42 Aligned_cols=41 Identities=29% Similarity=0.604 Sum_probs=27.8
Q ss_pred cccccCCcccc--cccccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHH
Q 020697 73 SLHRQGSLTLA--QDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLI 128 (322)
Q Consensus 73 ~lqRQgSltLp--~tLs~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLv 128 (322)
.++..|+..+| ...-++-||.||+.+-... . |..|||||+-
T Consensus 129 i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~--D-------------g~lT~eef~~ 171 (193)
T KOG0044|consen 129 IYQMTGSKALPEDEETPEERVDKIFSKMDKNK--D-------------GKLTLEEFIE 171 (193)
T ss_pred HHHHcccccCCcccccHHHHHHHHHHHcCCCC--C-------------CcccHHHHHH
Confidence 35566666665 2234455889999886554 1 8999999985
No 92
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.65 E-value=4e+02 Score=23.15 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=31.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 258 MIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 258 ~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+.+.-.......++=.+|+.+||..+..++.++.++.++.
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444455556667777999999999999999999988775
No 93
>TIGR02750 TraN_Ftype type-F conjugative transfer system mating-pair stabilization protein TraN. TraN is a large cysteine-rich outer membrane protein involved in the mating-pair stabilization (adhesin) component of the F-type conjugative plamid transfer system. TraN is believed to interact with the core type IV secretion system apparatus through the TraV protein.
Probab=22.55 E-value=57 Score=35.01 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=22.6
Q ss_pred eehHhHHHhhhcCCCCCCCCCcHHHHHhhhhc
Q 020697 30 NLTLDEIQSQLGDRGKPLGSMNLDELLKSVWT 61 (322)
Q Consensus 30 sLTldE~q~~lg~~GK~fgSMNmDElLknIwt 61 (322)
-+|+||||.- ||..|++.||...|-.
T Consensus 529 G~t~~elq~i------dfs~iD~se~~~~l~~ 554 (572)
T TIGR02750 529 GITPEELQQI------NFESIDFSPFYEDLHN 554 (572)
T ss_pred CCCHHHHhhC------CcccccHHHHHHHHHh
Confidence 4799999986 9999999999988743
No 94
>PRK14877 conjugal transfer mating pair stabilization protein TraN; Provisional
Probab=22.38 E-value=58 Score=36.55 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=25.5
Q ss_pred eehHhHHHhhhcCCCCCCCCCcHHHHHhhhhcccc
Q 020697 30 NLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTAEN 64 (322)
Q Consensus 30 sLTldE~q~~lg~~GK~fgSMNmDElLknIwtaEe 64 (322)
-+|+||||.- ||..|+|+||+..|--+..
T Consensus 948 GfT~eEfQkL------DFSkIDlSEf~~dl~~a~~ 976 (1062)
T PRK14877 948 GLSIKQIQQL------DFDKIDLTEWINDAVQVGE 976 (1062)
T ss_pred CcCHHHHhhC------CcccccHHHHHHHHHHhcc
Confidence 4799999986 9999999999999977655
No 95
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=22.34 E-value=1.7e+02 Score=22.94 Aligned_cols=16 Identities=44% Similarity=0.740 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 020697 282 KVSRLEEENERLRRQR 297 (322)
Q Consensus 282 kv~~Le~EN~~L~~~~ 297 (322)
+...|+.||++|+.+.
T Consensus 40 e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 40 ENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555554433
No 96
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=22.27 E-value=44 Score=26.50 Aligned_cols=52 Identities=17% Similarity=0.074 Sum_probs=30.8
Q ss_pred cccccccccccHHHHHHHHhhcc----CCCchhhHHhhhccccchhhHHHHHHHhcc
Q 020697 80 LTLAQDLSNKTVDEVWKDIRQKK----SDDNQENEAQARQTSLGEMTLEDFLIKAGA 132 (322)
Q Consensus 80 ltLp~tLs~KTVDEVWrdI~~~~----~~~~~~~~~~~rQ~TLGEMTLEdFLvrAGV 132 (322)
|.+|..-..=|.+.|+.=|.-.. -+. ....-.---..|=.||.|||+.||+.
T Consensus 4 L~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~-~~~~F~mnG~~LC~ls~edF~~r~p~ 59 (76)
T cd08532 4 LGISPDPYQWSPANVQKWLLWTEHQYRLPP-PPRCFELNGKDLCALSEEDFRRRAPQ 59 (76)
T ss_pred CCCCCChhhcCHHHHHHHHHHHHHHhCCCC-chhcCCCCHHHHHcCCHHHHHHHcCC
Confidence 45666666778888887655321 001 10111112345778999999999865
No 97
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=22.21 E-value=86 Score=24.01 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=20.4
Q ss_pred cccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHH
Q 020697 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLI 128 (322)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLv 128 (322)
.+.+.|+++|+.+-... =|-+|+++|+.
T Consensus 48 ~~~~ei~~i~~~~d~~~---------------~g~I~f~eF~~ 75 (88)
T cd00213 48 KDPEAVDKIMKDLDVNK---------------DGKVDFQEFLV 75 (88)
T ss_pred CCHHHHHHHHHHhccCC---------------CCcCcHHHHHH
Confidence 45677999998884432 16799999975
No 98
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=22.19 E-value=3.5e+02 Score=26.32 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 266 ARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 266 ~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.++=.+-+..+++||.++..|+.|.+.|..+.
T Consensus 192 ~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444556788999999999999999998876
No 99
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.09 E-value=88 Score=25.55 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=22.7
Q ss_pred cHHHHHHHHhhccCCCchhhHHhhhccccchh----hHHHHHHHhccccCC
Q 020697 90 TVDEVWKDIRQKKSDDNQENEAQARQTSLGEM----TLEDFLIKAGAVNES 136 (322)
Q Consensus 90 TVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEM----TLEdFLvrAGVV~e~ 136 (322)
|++|||+.+.+.. +.++-. ||+ +|+++|+|..-
T Consensus 25 ta~ei~~~l~~~~-------------~~is~~TVYR~L~-~L~e~Gli~~~ 61 (120)
T PF01475_consen 25 TAEEIYDKLRKKG-------------PRISLATVYRTLD-LLEEAGLIRKI 61 (120)
T ss_dssp EHHHHHHHHHHTT-------------TT--HHHHHHHHH-HHHHTTSEEEE
T ss_pred CHHHHHHHhhhcc-------------CCcCHHHHHHHHH-HHHHCCeEEEE
Confidence 8999999997543 112222 454 99999999864
No 100
>PRK05849 hypothetical protein; Provisional
Probab=21.92 E-value=63 Score=35.91 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=16.7
Q ss_pred ccchhhHHHHHHHhccccCC
Q 020697 117 SLGEMTLEDFLIKAGAVNES 136 (322)
Q Consensus 117 TLGEMTLEdFLvrAGVV~e~ 136 (322)
.||||+.++||.|=|--+.+
T Consensus 500 ~lg~l~~~~FL~~YGHR~~g 519 (783)
T PRK05849 500 SLGELSKDEFLKRYGHLRPG 519 (783)
T ss_pred HHhccCHHHHHHHhCCCCCC
Confidence 34999999999999977654
No 101
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=21.39 E-value=4.9e+02 Score=22.13 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 249 KTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRR 295 (322)
Q Consensus 249 ~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~ 295 (322)
+.-++|..++.++-+.|...+..-.+.+.+.+.++...+.+-.++..
T Consensus 31 ~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~ 77 (156)
T PRK05759 31 KALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIE 77 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777777666666555544
No 102
>PF06311 NumbF: NUMB domain; InterPro: IPR010449 This entry represents a domain found in the cell-fate determinant Numb, and in related proteins. In Drosophila, two signalling pathways, one mediated by Numb and the other by Notch, play essential but antagonistic roles in enabling the two daughters to adopt different fates after a wide variety of asymmetric cell divisions []. Numb acts to inhibit Notch signalling, this inhibition being critical for many cell fate decisions []. Mammalian Numb (mNumb) has multiple functions and plays important roles in the regulation of neural development, including maintenance of neural progenitor cells and promotion of neuronal differentiation in the central nervous system (CNS) [].
Probab=21.17 E-value=29 Score=28.60 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=16.2
Q ss_pred CCccccccCCcccccccccc
Q 020697 70 PALSLHRQGSLTLAQDLSNK 89 (322)
Q Consensus 70 ~~~~lqRQgSltLp~tLs~K 89 (322)
+..-|.|||||-....|+++
T Consensus 11 ~~~~L~RQgS~R~f~~l~~~ 30 (88)
T PF06311_consen 11 PPSMLERQGSFRGFPKLSQQ 30 (88)
T ss_pred CHHHHHhhhccccccccccc
Confidence 33459999999988888887
No 103
>PRK12355 conjugal transfer mating pair stabilization protein TraN; Reviewed
Probab=21.06 E-value=64 Score=34.53 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=22.9
Q ss_pred eehHhHHHhhhcCCCCCCCCCcHHHHHhhhhc
Q 020697 30 NLTLDEIQSQLGDRGKPLGSMNLDELLKSVWT 61 (322)
Q Consensus 30 sLTldE~q~~lg~~GK~fgSMNmDElLknIwt 61 (322)
-+|.||||.- ||..|++.||...|-.
T Consensus 515 g~t~~elq~i------dfs~id~se~~~~~~~ 540 (558)
T PRK12355 515 GFTVDELQKI------DFSRIDFSEFYEDLMN 540 (558)
T ss_pred CCCHHHHhhC------CcccccHHHHHHHHHh
Confidence 4799999986 9999999999988854
No 104
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.96 E-value=3.3e+02 Score=30.02 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020697 279 LENKVSRLEEENERLRRQR 297 (322)
Q Consensus 279 LE~kv~~Le~EN~~L~~~~ 297 (322)
+..+..+||.|..+|+.++
T Consensus 543 ~r~r~~~lE~E~~~lr~el 561 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRREL 561 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444
No 105
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=20.58 E-value=6.3e+02 Score=22.75 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 249 KTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 249 ~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
...++..+++++.|..|+--=++|-+-..+|..++...++...++.+.+
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v 128 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHV 128 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777787766665555666677777776666665555555555
No 106
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.49 E-value=1.6e+02 Score=28.50 Aligned_cols=21 Identities=43% Similarity=0.477 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020697 277 QELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+|+.....|++||++|++.+
T Consensus 87 ~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 87 QQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445555566999999998866
No 107
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.33 E-value=5e+02 Score=22.21 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=25.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 256 KRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 256 rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.|=...|+.......++..-+..|+..+..|+.+++.+.+++
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666666666666666655
No 108
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=20.28 E-value=2.8e+02 Score=31.57 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 020697 258 MIKNRESAARSRARKQAYTQELENKVS-RLEEENER 292 (322)
Q Consensus 258 ~ikNReSA~rSR~RKkay~~eLE~kv~-~Le~EN~~ 292 (322)
|+-.|..+-.-|++.++|-..|+.++. +|.+|-++
T Consensus 960 ~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~ee 995 (1259)
T KOG0163|consen 960 METKRKAEEEQRKAQEEEERRLALELQEQLAKEAEE 995 (1259)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666666665 55555444
No 109
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=20.02 E-value=51 Score=29.25 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=8.9
Q ss_pred cccchhhHHHHHHHhc
Q 020697 116 TSLGEMTLEDFLIKAG 131 (322)
Q Consensus 116 ~TLGEMTLEdFLvrAG 131 (322)
-+-|.+|.||| |.||
T Consensus 23 ~etG~iTPeEF-V~AG 37 (145)
T PF03986_consen 23 KETGVITPEEF-VAAG 37 (145)
T ss_dssp HHHS---HHHH-HHHH
T ss_pred cccceeCHHHH-HHhh
Confidence 35599999999 5676
Done!