Query 020697
Match_columns 322
No_of_seqs 203 out of 797
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.1E-13 3.9E-18 101.6 6.9 45 253-297 1-45 (55)
2 2wt7_A Proto-oncogene protein 99.2 4.8E-11 1.6E-15 89.5 7.0 46 252-297 1-46 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.1 1.8E-10 6.2E-15 85.6 6.9 45 253-297 1-45 (61)
4 2dgc_A Protein (GCN4); basic d 99.1 2.2E-10 7.6E-15 86.2 6.5 48 250-297 6-53 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.0 1E-09 3.6E-14 81.8 6.9 45 253-297 1-45 (62)
6 1ci6_A Transcription factor AT 98.6 4.3E-08 1.5E-12 73.5 5.7 45 253-297 2-46 (63)
7 1gu4_A CAAT/enhancer binding p 98.3 1.6E-06 5.6E-11 67.8 7.2 50 248-297 10-59 (78)
8 1hjb_A Ccaat/enhancer binding 98.2 2.9E-06 9.9E-11 67.6 7.3 50 248-297 10-59 (87)
9 1gd2_E Transcription factor PA 98.1 6E-06 2.1E-10 63.4 7.1 43 255-297 10-52 (70)
10 3a5t_A Transcription factor MA 98.0 1.5E-06 5.2E-11 71.7 1.2 51 247-297 31-81 (107)
11 2wt7_B Transcription factor MA 97.5 0.00042 1.4E-08 55.5 8.7 50 248-297 22-71 (90)
12 1skn_P DNA-binding domain of S 95.1 0.01 3.6E-07 47.5 2.7 34 248-281 57-90 (92)
13 2oqq_A Transcription factor HY 94.4 0.036 1.2E-06 38.5 3.5 25 273-297 2-26 (42)
14 2c9l_Y EB1, zebra, BZLF1 trans 93.3 0.58 2E-05 34.3 8.4 40 258-297 6-45 (63)
15 2oxj_A Hybrid alpha/beta pepti 82.7 1.5 5.3E-05 29.0 3.8 23 275-297 2-24 (34)
16 3m48_A General control protein 82.7 1.3 4.4E-05 29.2 3.4 22 276-297 2-23 (33)
17 3s9g_A Protein hexim1; cyclin 82.6 5.5 0.00019 32.3 7.8 25 273-297 64-88 (104)
18 2kz5_A Transcription factor NF 81.3 0.12 4.2E-06 41.3 -2.3 27 248-274 61-87 (91)
19 1kd8_A GABH AIV, GCN4 acid bas 80.5 1.2 4.2E-05 29.8 2.8 22 276-297 3-24 (36)
20 1kd8_B GABH BLL, GCN4 acid bas 80.0 1.9 6.5E-05 28.9 3.5 23 275-297 2-24 (36)
21 2oqq_A Transcription factor HY 79.5 3.7 0.00013 28.4 5.0 24 274-297 17-40 (42)
22 3he5_A Synzip1; heterodimeric 79.3 2.6 8.9E-05 29.3 4.2 23 275-297 4-26 (49)
23 1dip_A Delta-sleep-inducing pe 78.9 2.1 7.1E-05 33.1 4.0 24 274-297 22-45 (78)
24 3c3f_A Alpha/beta peptide with 77.7 2.5 8.6E-05 28.0 3.5 23 275-297 2-24 (34)
25 3c3g_A Alpha/beta peptide with 75.6 4.2 0.00014 26.8 4.1 22 276-297 2-23 (33)
26 1am9_A Srebp-1A, protein (ster 74.0 3.5 0.00012 31.6 4.1 27 271-297 47-73 (82)
27 1uo4_A General control protein 73.3 3.9 0.00013 27.1 3.6 23 275-297 2-24 (34)
28 2bni_A General control protein 73.3 3.9 0.00013 27.1 3.6 23 275-297 2-24 (34)
29 1zme_C Proline utilization tra 71.7 3.1 0.00011 29.8 3.2 25 273-297 43-67 (70)
30 2oa5_A Hypothetical protein BQ 71.1 2.2 7.6E-05 35.1 2.5 24 274-297 8-31 (110)
31 1hlo_A Protein (transcription 70.3 2.9 9.8E-05 31.7 2.9 25 272-296 55-79 (80)
32 2hy6_A General control protein 69.4 4.9 0.00017 26.6 3.4 23 275-297 2-24 (34)
33 2wq1_A General control protein 67.8 8.1 0.00028 25.4 4.1 22 276-297 2-23 (33)
34 1gu4_A CAAT/enhancer binding p 65.1 22 0.00074 27.3 6.9 58 248-305 14-76 (78)
35 1hjb_A Ccaat/enhancer binding 64.3 20 0.00068 28.1 6.7 59 248-306 14-77 (87)
36 1fmh_A General control protein 64.0 11 0.00037 24.3 4.1 22 276-297 3-24 (33)
37 1nkp_B MAX protein, MYC proto- 59.7 10 0.00034 28.7 4.1 25 273-297 46-70 (83)
38 2r2v_A GCN4 leucine zipper; co 59.2 14 0.00049 24.4 4.1 22 276-297 3-24 (34)
39 2er8_A Regulatory protein Leu3 57.8 5.5 0.00019 28.7 2.3 22 273-294 48-69 (72)
40 1nlw_A MAD protein, MAX dimeri 53.6 19 0.00067 27.4 4.8 26 272-297 45-70 (80)
41 3nmd_A CGMP dependent protein 51.5 23 0.00079 27.0 4.8 27 271-297 37-63 (72)
42 1go4_E MAD1 (mitotic arrest de 51.4 14 0.00049 29.8 3.9 28 275-302 13-42 (100)
43 1p9i_A Cortexillin I/GCN4 hybr 51.3 15 0.00053 23.3 3.2 20 278-297 3-22 (31)
44 2dfs_A Myosin-5A; myosin-V, in 50.4 41 0.0014 36.9 8.5 25 273-297 1015-1039(1080)
45 2yy0_A C-MYC-binding protein; 50.3 22 0.00074 25.3 4.3 22 276-297 28-49 (53)
46 2k8f_B Cellular tumor antigen 49.1 7.9 0.00027 26.0 1.7 23 77-99 5-27 (39)
47 2wuj_A Septum site-determining 48.1 22 0.00076 25.4 4.1 24 274-297 27-50 (57)
48 2dgc_A Protein (GCN4); basic d 44.9 64 0.0022 23.5 6.3 49 249-297 9-60 (63)
49 2p22_D Hypothetical 12.0 kDa p 44.5 6.5 0.00022 30.6 0.8 10 50-59 1-10 (79)
50 3he4_B Synzip5; heterodimeric 42.7 44 0.0015 22.9 4.6 26 272-297 8-33 (46)
51 1deb_A APC protein, adenomatou 41.8 27 0.00093 25.1 3.6 21 277-297 6-26 (54)
52 3fs7_A Parvalbumin, thymic; ca 37.9 40 0.0014 24.7 4.4 29 85-128 77-105 (109)
53 1zxa_A CGMP-dependent protein 37.4 53 0.0018 24.7 4.8 27 271-297 22-48 (67)
54 2kyc_A Parvalbumin-3, parvalbu 36.8 47 0.0016 24.2 4.6 30 29-59 4-33 (108)
55 3q4f_C DNA repair protein XRCC 36.5 27 0.00093 31.0 3.6 24 274-297 161-184 (186)
56 2lz1_A Nuclear factor erythroi 36.5 0.63 2.1E-05 37.1 -6.2 25 249-273 62-86 (90)
57 1ci6_A Transcription factor AT 34.3 1.3E+02 0.0044 21.7 7.6 23 277-299 40-62 (63)
58 1ggw_A Protein (CDC4P); light 34.0 38 0.0013 25.6 3.8 15 46-60 50-64 (140)
59 3w03_C DNA repair protein XRCC 33.2 41 0.0014 29.8 4.3 23 275-297 153-175 (184)
60 2jws_A GA88; evolution, foldin 32.9 14 0.00047 27.0 0.9 10 87-96 35-44 (56)
61 1nkp_B MAX protein, MYC proto- 32.6 53 0.0018 24.6 4.3 23 275-297 55-77 (83)
62 1nkp_A C-MYC, MYC proto-oncoge 31.7 67 0.0023 24.7 4.8 26 272-297 50-75 (88)
63 1iq3_A Ralbp1-interacting prot 31.0 24 0.00083 27.5 2.2 31 86-131 53-83 (110)
64 1hwt_C Protein (heme activator 30.8 19 0.00065 26.2 1.5 23 272-294 56-78 (81)
65 1a93_B MAX protein, coiled coi 30.2 71 0.0024 21.1 3.9 20 278-297 11-30 (34)
66 3hnw_A Uncharacterized protein 30.0 2.2E+02 0.0076 23.6 8.1 30 268-297 97-126 (138)
67 1qjt_A EH1, epidermal growth f 29.8 19 0.00065 27.4 1.4 33 86-133 42-74 (99)
68 3oja_A Leucine-rich immune mol 29.6 1.6E+02 0.0056 28.1 8.3 31 267-297 428-458 (487)
69 5pal_A Parvalbumin; calcium-bi 28.6 25 0.00084 25.9 1.8 33 82-131 2-34 (109)
70 1kd8_A GABH AIV, GCN4 acid bas 28.1 1E+02 0.0035 20.5 4.4 24 274-297 8-31 (36)
71 1eh2_A EPS15; calcium binding, 26.5 28 0.00097 27.1 1.9 32 86-132 45-76 (106)
72 2aze_A Transcription factor DP 26.2 1.4E+02 0.0048 25.8 6.3 27 269-295 21-50 (155)
73 2bl0_B Myosin regulatory light 26.2 45 0.0015 25.1 2.9 10 119-128 127-136 (145)
74 3coq_A Regulatory protein GAL4 26.1 61 0.0021 23.7 3.6 21 274-294 45-65 (89)
75 4ath_A MITF, microphthalmia-as 25.9 1.2E+02 0.004 23.6 5.2 27 274-300 49-77 (83)
76 3s9g_A Protein hexim1; cyclin 25.5 54 0.0018 26.6 3.3 18 278-295 41-58 (104)
77 1fpw_A Yeast frequenin, calciu 25.3 53 0.0018 26.2 3.4 30 85-129 143-172 (190)
78 2f33_A Calbindin; EF-hand, Ca2 24.8 1.2E+02 0.0039 25.4 5.6 35 85-130 139-173 (263)
79 1pyi_A Protein (pyrimidine pat 24.5 55 0.0019 24.5 3.1 20 274-293 48-67 (96)
80 1uii_A Geminin; human, DNA rep 24.0 81 0.0028 24.6 4.0 23 274-296 53-75 (83)
81 1sv0_A ETS DNA-binding protein 24.0 24 0.00082 27.3 1.0 53 80-132 4-60 (85)
82 2dkx_A SAM pointed domain-cont 23.7 26 0.00088 27.7 1.1 52 80-132 18-74 (96)
83 3vmx_A Voltage-gated hydrogen 23.7 91 0.0031 22.0 3.8 23 274-296 18-40 (48)
84 3a7p_A Autophagy protein 16; c 23.4 3.5E+02 0.012 23.2 8.6 24 275-298 111-134 (152)
85 1gd2_E Transcription factor PA 23.4 2.3E+02 0.0078 21.1 6.3 24 274-297 36-59 (70)
86 2l5g_A GPS2 protein, G protein 23.3 91 0.0031 21.0 3.5 24 272-295 13-36 (38)
87 3ra3_B P2F; coiled coil domain 23.0 47 0.0016 20.6 1.9 13 285-297 4-16 (28)
88 1t2k_D Cyclic-AMP-dependent tr 22.2 2.1E+02 0.0072 20.1 7.3 22 276-297 31-52 (61)
89 3o0z_A RHO-associated protein 22.1 3.2E+02 0.011 23.8 7.8 46 252-297 68-113 (168)
90 3mse_B Calcium-dependent prote 22.1 1.5E+02 0.0051 23.7 5.5 10 119-128 165-174 (180)
91 3pjs_K KCSA, voltage-gated pot 22.1 2E+02 0.0067 23.9 6.4 27 271-297 135-161 (166)
92 2kz2_A Calmodulin, CAM; TR2C, 21.8 75 0.0025 23.2 3.3 47 47-128 43-89 (94)
93 2lv7_A Calcium-binding protein 21.6 88 0.003 23.7 3.8 47 47-128 50-96 (100)
94 3ljm_A Coil Ser L9C; de novo d 21.3 1.4E+02 0.0048 18.8 3.9 21 277-297 4-24 (31)
95 2ve7_C Kinetochore protein NUF 21.2 94 0.0032 28.3 4.5 49 249-297 116-171 (250)
96 2j5u_A MREC protein; bacterial 20.9 90 0.0031 28.3 4.3 24 274-297 36-59 (255)
97 1wlq_A Geminin; coiled-coil; 2 20.8 68 0.0023 25.1 2.9 24 273-296 44-67 (83)
98 2jq6_A EH domain-containing pr 20.4 39 0.0013 28.1 1.6 31 86-131 81-111 (139)
99 3li6_A Calcium-binding protein 20.3 47 0.0016 21.8 1.8 29 85-128 32-60 (66)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.45 E-value=1.1e-13 Score=101.62 Aligned_cols=45 Identities=42% Similarity=0.684 Sum_probs=43.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 253 rr~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|+++||++||+||++||.|||+|+++||.+|..|+.||..|+.++
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.17 E-value=4.8e-11 Score=89.48 Aligned_cols=46 Identities=30% Similarity=0.513 Sum_probs=44.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 252 ERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 252 err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|||++|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999988
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.09 E-value=1.8e-10 Score=85.59 Aligned_cols=45 Identities=33% Similarity=0.541 Sum_probs=43.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 253 rr~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
||++|+++||+||++||.|||+|+.+||.+|..|+.+|..|..++
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999988
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.06 E-value=2.2e-10 Score=86.17 Aligned_cols=48 Identities=33% Similarity=0.411 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 250 ~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..++..++..+||+||++||.||++|+.+||.+|..|+.+|..|..++
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555569999999999999999999999999999999999987
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.97 E-value=1e-09 Score=81.79 Aligned_cols=45 Identities=31% Similarity=0.485 Sum_probs=42.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 253 rr~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|+.+|..+||+||++||.||++|+.+||.+|..|+.+|..|..++
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999988
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.62 E-value=4.3e-08 Score=73.53 Aligned_cols=45 Identities=31% Similarity=0.521 Sum_probs=38.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 253 rr~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|+.+++.+||.||+|+|.||++++.+||.++..|+.+|..|+.++
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i 46 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERA 46 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999999999999999988
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.29 E-value=1.6e-06 Score=67.78 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 248 EKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 248 e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|+.++.-..|..||.++|++||.++++...+++.++..|+.||..|+.++
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v 59 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV 59 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555557799999999999999999999999999999999999998
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.22 E-value=2.9e-06 Score=67.64 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 248 EKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 248 e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|+.+++-..|..||.++|++||.++++...+++.++..|+.||..|+.++
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v 59 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV 59 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667899999999999999999999999999999999999988
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.13 E-value=6e-06 Score=63.35 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=37.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 255 QKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 255 ~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+|...||.|++..|.||++|+.+||.+|..|+.+|..|..++
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en 52 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLEN 52 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999987777665554
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=97.97 E-value=1.5e-06 Score=71.68 Aligned_cols=51 Identities=29% Similarity=0.437 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 247 VEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 247 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+...-|.+||..|||.+|+.||.||.+.+++||.++..|..+.+.|+.++
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En 81 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASEN 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTT
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667999999999999999999999999999988777777666666655
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.51 E-value=0.00042 Score=55.54 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 248 EKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 248 e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+-..-|..||-.|||..|+.||.||..-..+||.++..|..+.+.|++++
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~ 71 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEV 71 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888899999999999999999999999999999999888888887
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.14 E-value=0.01 Score=47.46 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020697 248 EKTVERRQKRMIKNRESAARSRARKQAYTQELEN 281 (322)
Q Consensus 248 e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~ 281 (322)
.-...|..||..|||.+|++||+||.+.+.+|+.
T Consensus 57 Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 57 QRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 3456788999999999999999999998887764
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=94.40 E-value=0.036 Score=38.45 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
|+|+.+||.+++.|+..|.+|..++
T Consensus 2 KaYl~eLE~r~k~le~~naeLEerv 26 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERL 26 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888887776
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=93.29 E-value=0.58 Score=34.34 Aligned_cols=40 Identities=33% Similarity=0.341 Sum_probs=31.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 258 MIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 258 ~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.-|||.++++||+|=|..++-...-...-.+||++|+--+
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~ 45 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLL 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 3589999999999988877777666666678999987544
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=82.73 E-value=1.5 Score=29.00 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+..||.+|..|-.+|..|..++
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHH
Confidence 46889999999999999999987
No 16
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=82.66 E-value=1.3 Score=29.23 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020697 276 TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+..||.+|+.|-.+|..|..++
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV 23 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEV 23 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHH
Confidence 5689999999999999999987
No 17
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.57 E-value=5.5 Score=32.32 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
-+.+.+||.+|..|..||+.|+++.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999987
No 18
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=81.29 E-value=0.12 Score=41.27 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 020697 248 EKTVERRQKRMIKNRESAARSRARKQA 274 (322)
Q Consensus 248 e~~~err~rR~ikNReSA~rSR~RKka 274 (322)
.-...|..||.-|||.+|+++|+||..
T Consensus 61 Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 61 QLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345678889999999999999999853
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=80.50 E-value=1.2 Score=29.79 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020697 276 TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+..||.+|..|..+|..|..++
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV 24 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEV 24 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHH
Confidence 5678888888888888887776
No 20
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=79.99 E-value=1.9 Score=28.89 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+..||.+|+.|..+|..|..++
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHH
Confidence 46789999999999999998887
No 21
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=79.52 E-value=3.7 Score=28.39 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
....+||.+|+.|+.||.-|++.+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 346899999999999999998764
No 22
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.30 E-value=2.6 Score=29.29 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+..||.+|..|+.||+.|+++.
T Consensus 4 lvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhc
Confidence 46789999999999999999887
No 23
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.90 E-value=2.1 Score=33.14 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+.|.+|+.++++|+.||.-||.-.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567899999999999999998766
No 24
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=77.71 E-value=2.5 Score=27.96 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+..||.||+.|-.+|..|..++
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV 24 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEX 24 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHH
Confidence 46889999999999999999887
No 25
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=75.61 E-value=4.2 Score=26.76 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020697 276 TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+..||.||+.|-.+|..|..++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHH
Confidence 5789999999999999999887
No 26
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=74.04 E-value=3.5 Score=31.60 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 271 RKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 271 RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+--.|+..|+.++..|++||..|+.++
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999887
No 27
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=73.35 E-value=3.9 Score=27.12 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+..||.+|+.|-.+|..|..++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV 24 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENEL 24 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHH
Confidence 35789999999999999999887
No 28
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=73.33 E-value=3.9 Score=27.10 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+..||.||+.|-.+|..|..++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV 24 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNEL 24 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHH
Confidence 46789999999999999999887
No 29
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=71.69 E-value=3.1 Score=29.76 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..|++.||.++..|+..+..|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999998765
No 30
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=71.09 E-value=2.2 Score=35.13 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.-+++|++++..|+-||..|++++
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999986
No 31
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=70.28 E-value=2.9 Score=31.72 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLRRQ 296 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~~~ 296 (322)
--.|+..|+.++..|+.+++.|+++
T Consensus 55 Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 55 ATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999986
No 32
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=69.35 E-value=4.9 Score=26.60 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+..||.+|+.|-.+|..|..++
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV 24 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAV 24 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHH
Confidence 35789999999999999998887
No 33
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=67.77 E-value=8.1 Score=25.40 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020697 276 TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+..||.||+.|-.+|..|..++
T Consensus 2 MnQLEdKVEell~~~~~le~EV 23 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHH
Confidence 5789999999999999988887
No 34
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=65.06 E-value=22 Score=27.31 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCC
Q 020697 248 EKTVERRQKRMI---KNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR--AEVILPCA 305 (322)
Q Consensus 248 e~~~err~rR~i---kNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~--~E~~~~~~ 305 (322)
++-.+||.+==+ |-|+.++.--.--+..+++|+.+-..|+.+...|..++ +-.+|...
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 444555555333 34444444334445678899999999999999999988 54455433
No 35
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.29 E-value=20 Score=28.12 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCCC
Q 020697 248 EKTVERRQKRMI---KNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR--AEVILPCAP 306 (322)
Q Consensus 248 e~~~err~rR~i---kNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~--~E~~~~~~~ 306 (322)
++--+||.+==+ |-|+.++.--.--+..+++||.+-..|+.+.+.|..++ +..+|...|
T Consensus 14 ~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 344455555333 33333333333345568889999999999999998888 444544443
No 36
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=63.95 E-value=11 Score=24.27 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020697 276 TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+..||++|.+.+.||-+|.+++
T Consensus 3 vaqlekevaqaeaenyqleqev 24 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 4578999999999999998887
No 37
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=59.75 E-value=10 Score=28.71 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
-.|+..|+.++..|+.|.+.|++++
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999988888888888888877
No 38
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=59.20 E-value=14 Score=24.39 Aligned_cols=22 Identities=5% Similarity=0.090 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020697 276 TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+..||.||+.|-.+|..|..++
T Consensus 3 MnQledKvEel~~~~~~l~nEv 24 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 5788999999988888888777
No 39
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=57.79 E-value=5.5 Score=28.73 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLR 294 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~ 294 (322)
..|+..||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999998877664
No 40
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=53.56 E-value=19 Score=27.41 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
-.+||..|+.+...|..|++.|++++
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999998887
No 41
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.49 E-value=23 Score=27.04 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 271 RKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 271 RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.|.+.+.+||.++...+++...|+.++
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366779999999999999999999987
No 42
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.35 E-value=14 Score=29.80 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhc
Q 020697 275 YTQELENKVSRLEEENERLRRQR--AEVIL 302 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~--~E~~~ 302 (322)
-+..|..++..|+.||.+|++++ +|+-+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888887 55544
No 43
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=51.26 E-value=15 Score=23.26 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020697 278 ELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 278 eLE~kv~~Le~EN~~L~~~~ 297 (322)
.|-.-+..|+.||.+|+.++
T Consensus 3 qlnallasleaenkqlkakv 22 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKV 22 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888876
No 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=50.37 E-value=41 Score=36.86 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+...++|+.+|+.|++||..|++++
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788889999999999999887
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.29 E-value=22 Score=25.34 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020697 276 TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..+|..++..|.+++++|+.++
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888775
No 46
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=49.06 E-value=7.9 Score=26.01 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=19.3
Q ss_pred cCCcccccccccccHHHHHHHHh
Q 020697 77 QGSLTLAQDLSNKTVDEVWKDIR 99 (322)
Q Consensus 77 QgSltLp~tLs~KTVDEVWrdI~ 99 (322)
|..+++-.+|||.|..+.|+-+-
T Consensus 5 qsd~siepPLSQETFsdLW~LLP 27 (39)
T 2k8f_B 5 QSDPSVEPPLSQETFSDLWKLLP 27 (39)
T ss_dssp CCCSSCCCCCSCHHHHHHHHTCS
T ss_pred ccccccCCCccHHHHHHHHHhCC
Confidence 45688888999999999999653
No 47
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=48.13 E-value=22 Score=25.39 Aligned_cols=24 Identities=4% Similarity=0.148 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+|+..+...+..|..||..|+.++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~ 50 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKV 50 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888887
No 48
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.86 E-value=64 Score=23.47 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 249 KTVERRQKRMIKNRESAARSRARK---QAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 249 ~~~err~rR~ikNReSA~rSR~RK---kay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+.+.||.+=.+.-|.|-.+-..+= ..-++.|+.+...|..+...|+.++
T Consensus 9 ~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 9 PAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443444444433333333 2456789999999999999998765
No 49
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=44.47 E-value=6.5 Score=30.61 Aligned_cols=10 Identities=50% Similarity=0.992 Sum_probs=9.5
Q ss_pred CcHHHHHhhh
Q 020697 50 MNLDELLKSV 59 (322)
Q Consensus 50 MNmDElLknI 59 (322)
|||||+|++|
T Consensus 1 ~~~e~~Lr~I 10 (79)
T 2p22_D 1 MNVEELLRRI 10 (79)
T ss_dssp CHHHHHHHHS
T ss_pred CCHHHHHhcC
Confidence 8999999998
No 50
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=42.73 E-value=44 Score=22.86 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
-|.|+++||.+...|+.-.+.|+-..
T Consensus 8 lknyiqeleernaelknlkehlkfak 33 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAK 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 36799999988887776666665444
No 51
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=41.76 E-value=27 Score=25.09 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020697 277 QELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+.|-.+|+.|+.||..|++++
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 567778899999999999887
No 52
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=37.93 E-value=40 Score=24.67 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=18.3
Q ss_pred ccccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHH
Q 020697 85 DLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLI 128 (322)
Q Consensus 85 tLs~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLv 128 (322)
.++...++++|+.+-... =|.++++||+.
T Consensus 77 ~~~~~~~~~~~~~~D~~~---------------dg~i~~~EF~~ 105 (109)
T 3fs7_A 77 VLTSAETKAFLAAGDTDG---------------DGKIGVEEFQS 105 (109)
T ss_dssp CCCHHHHHHHHHHHCTTC---------------SSSBCHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCC---------------CCcCcHHHHHH
Confidence 355566677776664322 17789999974
No 53
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=37.39 E-value=53 Score=24.66 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 271 RKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 271 RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.|.+.+.+||..+..-..|+.+|+.++
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377889999999999999999999987
No 54
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=36.79 E-value=47 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=20.0
Q ss_pred ceehHhHHHhhhcCCCCCCCCCcHHHHHhhh
Q 020697 29 YNLTLDEIQSQLGDRGKPLGSMNLDELLKSV 59 (322)
Q Consensus 29 ysLTldE~q~~lg~~GK~fgSMNmDElLknI 59 (322)
|.+|-+|++.-+-... .-|.++.+||++-+
T Consensus 4 ~~~~~~e~~~l~~~~d-~~g~i~~~eF~~~~ 33 (108)
T 2kyc_A 4 DILSPSDIAAALRDCQ-APDSFSPKKFFQIS 33 (108)
T ss_dssp SSSCHHHHHHHHTTSC-STTTCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcC-CCCcCCHHHHHHHH
Confidence 4566667776655444 45778888888765
No 55
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=36.51 E-value=27 Score=31.05 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..+.+|+.+..+|.+||++|.++.
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346889999999999999998763
No 56
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=36.48 E-value=0.63 Score=37.13 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH
Q 020697 249 KTVERRQKRMIKNRESAARSRARKQ 273 (322)
Q Consensus 249 ~~~err~rR~ikNReSA~rSR~RKk 273 (322)
-.--+..||.-|||.+|+++|+||.
T Consensus 62 l~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 62 LALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHHhhhhHHHHHHcchhhc
Confidence 3456778888899999999999974
No 57
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.29 E-value=1.3e+02 Score=21.68 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 277 QELENKVSRLEEENERLRRQRAE 299 (322)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~~~~E 299 (322)
.+|+.+++.|+.|+..|+.-+.|
T Consensus 40 ~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 40 EALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666666666666655433
No 58
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=33.99 E-value=38 Score=25.56 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=10.4
Q ss_pred CCCCCcHHHHHhhhh
Q 020697 46 PLGSMNLDELLKSVW 60 (322)
Q Consensus 46 ~fgSMNmDElLknIw 60 (322)
.-|.++.+||+.-+-
T Consensus 50 ~~g~i~~~eF~~~~~ 64 (140)
T 1ggw_A 50 LPAEVDMEQFLQVLN 64 (140)
T ss_dssp SCSSEEHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHH
Confidence 357788888876553
No 59
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=33.25 E-value=41 Score=29.76 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.+.+|..++..|++||++|+++.
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999886
No 60
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=32.88 E-value=14 Score=27.04 Aligned_cols=10 Identities=50% Similarity=0.976 Sum_probs=8.5
Q ss_pred ccccHHHHHH
Q 020697 87 SNKTVDEVWK 96 (322)
Q Consensus 87 s~KTVDEVWr 96 (322)
-.||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 4689999995
No 61
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.64 E-value=53 Score=24.60 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
-...|+.++..|+.+|..|+.++
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888999999999998876
No 62
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=31.68 E-value=67 Score=24.68 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
-..|+..|+.+...|..+.+.|++++
T Consensus 50 A~~YI~~L~~~~~~l~~~~~~L~~~n 75 (88)
T 1nkp_A 50 ATAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999988777665555555544
No 63
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=30.97 E-value=24 Score=27.51 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=23.1
Q ss_pred cccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHHhc
Q 020697 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAG 131 (322)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAG 131 (322)
++...++++|+++-..+ -|.++++||+.--.
T Consensus 53 l~~~el~~i~~~~D~d~---------------dG~I~~~EF~~~m~ 83 (110)
T 1iq3_A 53 LSIPELSYIWELSDADC---------------DGALTLPEFCAAFH 83 (110)
T ss_dssp CSSCCHHHHHHHHCSSS---------------CSEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC---------------CCcCcHHHHHHHHH
Confidence 45778999999875432 18899999987543
No 64
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=30.77 E-value=19 Score=26.23 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLR 294 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~ 294 (322)
+..|++.||.+|..||.....|.
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999987766553
No 65
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.21 E-value=71 Score=21.06 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020697 278 ELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 278 eLE~kv~~Le~EN~~L~~~~ 297 (322)
.....+.+|+..|..|..++
T Consensus 11 a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHH
Confidence 34455667777777777665
No 66
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.01 E-value=2.2e+02 Score=23.62 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 268 SRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 268 SR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
--...+..+++++.++..|++++..|.+++
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666667777777777777666
No 67
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=29.80 E-value=19 Score=27.41 Aligned_cols=33 Identities=15% Similarity=0.405 Sum_probs=24.0
Q ss_pred cccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHHhccc
Q 020697 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAV 133 (322)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAGVV 133 (322)
++..+++++|+.+-... -|.++.+||+.--..+
T Consensus 42 l~~~~l~~i~~~~D~d~---------------dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 42 LPDLILGKIWDLADTDG---------------KGVLSKQEFFVALRLV 74 (99)
T ss_dssp SCHHHHHHHHHHHCCSS---------------SSSCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCC---------------CCcCCHHHHHHHHHHH
Confidence 35678999999875432 1889999998765444
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.62 E-value=1.6e+02 Score=28.06 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 267 RSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 267 rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.-|.|.+++++..-.+++.|++||++|++.+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 3455666777777778888888888888876
No 69
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=28.58 E-value=25 Score=25.89 Aligned_cols=33 Identities=12% Similarity=0.341 Sum_probs=25.3
Q ss_pred cccccccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHHhc
Q 020697 82 LAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAG 131 (322)
Q Consensus 82 Lp~tLs~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAG 131 (322)
|...++.+.|+++++.+-. =|.++++||+.-..
T Consensus 2 l~~~~s~~ei~~~~~~~d~-----------------~g~i~~~eF~~~~~ 34 (109)
T 5pal_A 2 MTKVLKADDINKAISAFKD-----------------PGTFDYKRFFHLVG 34 (109)
T ss_dssp GGGTSCHHHHHHHHHHTCS-----------------TTCCCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHhCC-----------------CCcCcHHHHHHHHh
Confidence 4566888889998888733 27899999998654
No 70
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=28.13 E-value=1e+02 Score=20.54 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
..+++|..+...|+.|-.+|+..+
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 356778888888888888887765
No 71
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=26.52 E-value=28 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=23.1
Q ss_pred cccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHHhcc
Q 020697 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGA 132 (322)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAGV 132 (322)
++..+++++|+.+-..+ -|.++.+||++---.
T Consensus 45 l~~~el~~i~~~~D~d~---------------dG~id~~EF~~~m~~ 76 (106)
T 1eh2_A 45 LPVDILGRVWELSDIDH---------------DGMLDRDEFAVAMFL 76 (106)
T ss_dssp CCHHHHHHHHHHHCSSC---------------SSBCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC---------------CCcCcHHHHHHHHHH
Confidence 45678999999875432 188999999875433
No 72
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.23 E-value=1.4e+02 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 020697 269 RARKQAYTQELENKVSR---LEEENERLRR 295 (322)
Q Consensus 269 R~RKkay~~eLE~kv~~---Le~EN~~L~~ 295 (322)
-++|++|+++|..+... |-+.|..+..
T Consensus 21 I~~K~~~LqeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999976554 4455555543
No 73
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=26.22 E-value=45 Score=25.08 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=7.9
Q ss_pred chhhHHHHHH
Q 020697 119 GEMTLEDFLI 128 (322)
Q Consensus 119 GEMTLEdFLv 128 (322)
|.++++||+.
T Consensus 127 g~i~~~eF~~ 136 (145)
T 2bl0_B 127 GAINYESFVD 136 (145)
T ss_dssp SEEEHHHHHH
T ss_pred CcEeHHHHHH
Confidence 7788888864
No 74
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=26.11 E-value=61 Score=23.71 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLR 294 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~ 294 (322)
.|+..||.++..||.....|.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 488889999999887776654
No 75
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=25.85 E-value=1.2e+02 Score=23.65 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHh
Q 020697 274 AYTQELENKVSRLEEENERLRRQR--AEV 300 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~--~E~ 300 (322)
+.+.+.|.+...|+..|..|..++ +|+
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 334555677777777888877666 554
No 76
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.46 E-value=54 Score=26.56 Aligned_cols=18 Identities=61% Similarity=0.914 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020697 278 ELENKVSRLEEENERLRR 295 (322)
Q Consensus 278 eLE~kv~~Le~EN~~L~~ 295 (322)
+||.+++.|++||.+|+.
T Consensus 41 ~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578888888888877776
No 77
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=25.34 E-value=53 Score=26.16 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=19.3
Q ss_pred ccccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHH
Q 020697 85 DLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIK 129 (322)
Q Consensus 85 tLs~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvr 129 (322)
.++.+.++++|+.+-... =|.+|++||+.-
T Consensus 143 ~~~~~~~~~~f~~~D~d~---------------dG~I~~~Ef~~~ 172 (190)
T 1fpw_A 143 ATPEMRVKKIFKLMDKNE---------------DGYITLDEFREG 172 (190)
T ss_dssp CCHHHHHHHHHHHHTTTC---------------SSEEEHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCC---------------CCcCcHHHHHHH
Confidence 355556777777664332 178999999753
No 78
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=24.81 E-value=1.2e+02 Score=25.36 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=20.7
Q ss_pred ccccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHHh
Q 020697 85 DLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKA 130 (322)
Q Consensus 85 tLs~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrA 130 (322)
.++...++++|..|.+.-..+. -|.++++||+.-.
T Consensus 139 ~~~~~~~~~~~~~~~~~~d~~~-----------dg~i~~~ef~~~~ 173 (263)
T 2f33_A 139 TVDDTKLAEYTDLMLKLFDSNN-----------DGKLELTEMARLL 173 (263)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSS-----------SSCBCHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhcCCCC-----------CCeEcHHHHHHHH
Confidence 3455567776666655321111 2789999997644
No 79
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.49 E-value=55 Score=24.48 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERL 293 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L 293 (322)
.|+..||.++..||.....+
T Consensus 48 ~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 48899999999887766544
No 80
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.00 E-value=81 Score=24.63 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQ 296 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~ 296 (322)
.-++.|+.+++.|+++|.+|+.-
T Consensus 53 ~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 53 KEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777788888888877654
No 81
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=23.99 E-value=24 Score=27.30 Aligned_cols=53 Identities=17% Similarity=-0.003 Sum_probs=31.2
Q ss_pred cccccccccccHHHHHHHHhhc---c-CCCchhhHHhhhccccchhhHHHHHHHhcc
Q 020697 80 LTLAQDLSNKTVDEVWKDIRQK---K-SDDNQENEAQARQTSLGEMTLEDFLIKAGA 132 (322)
Q Consensus 80 ltLp~tLs~KTVDEVWrdI~~~---~-~~~~~~~~~~~rQ~TLGEMTLEdFLvrAGV 132 (322)
+.||..-..=|.+.|+.=|.=. - -....-..-.--...|=.||.|||+.+|+.
T Consensus 4 ~~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 4 PSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp TTSCSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 4567777788889998766521 1 001110111111235667999999999974
No 82
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.74 E-value=26 Score=27.68 Aligned_cols=52 Identities=19% Similarity=0.088 Sum_probs=28.5
Q ss_pred cccccccccccHHHHHHHHhhccC-CCchhhHHhhhcc----ccchhhHHHHHHHhcc
Q 020697 80 LTLAQDLSNKTVDEVWKDIRQKKS-DDNQENEAQARQT----SLGEMTLEDFLIKAGA 132 (322)
Q Consensus 80 ltLp~tLs~KTVDEVWrdI~~~~~-~~~~~~~~~~rQ~----TLGEMTLEdFLvrAGV 132 (322)
+.+|..-..=|.+.|+.=|.-..+ -.-.... ..+.. .|=.||.|||+.||+.
T Consensus 18 l~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~-~~~f~m~G~~LC~lskedF~~~~p~ 74 (96)
T 2dkx_A 18 LNITADPMDWSPSNVQKWLLWTEHQYRLPPMG-KAFQELAGKELCAMSEEQFRQRSPL 74 (96)
T ss_dssp TTCCSCGGGCCSSTHHHHHHHHHHHTTCCCCH-HHHSSCCHHHHHHSCHHHHHHHCSS
T ss_pred cCCCCChhhCCHHHHHHHHHHHHHhcCCCCCC-cccCCCCHHHHHhCCHHHHHHHcCc
Confidence 445666666677777665442110 0101111 12333 4667999999999973
No 83
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.73 E-value=91 Score=22.04 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQ 296 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~ 296 (322)
..+.+||.....++.|+++|++-
T Consensus 18 ~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 18 TKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHH
Confidence 34566677777777777776654
No 84
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.42 E-value=3.5e+02 Score=23.18 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 275 YTQELENKVSRLEEENERLRRQRA 298 (322)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~~~~ 298 (322)
.+..||.++..|++||..|-.+.+
T Consensus 111 q~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888777664
No 85
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.37 E-value=2.3e+02 Score=21.12 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
.-+.+||.....|..||..|+.++
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888999999998887
No 86
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.32 E-value=91 Score=20.98 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 272 KQAYTQELENKVSRLEEENERLRR 295 (322)
Q Consensus 272 Kkay~~eLE~kv~~Le~EN~~L~~ 295 (322)
-|+.+..|+.++..|++|..+|--
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888777766643
No 87
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.03 E-value=47 Score=20.59 Aligned_cols=13 Identities=38% Similarity=0.739 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 020697 285 RLEEENERLRRQR 297 (322)
Q Consensus 285 ~Le~EN~~L~~~~ 297 (322)
.|++.|.+|++++
T Consensus 4 rlkqknarlkqei 16 (28)
T 3ra3_B 4 RLKQKNARLKQEI 16 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHH
Confidence 3444444444444
No 88
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.23 E-value=2.1e+02 Score=20.14 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020697 276 TQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
++.|+.+...|..+...|+.++
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 89
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.14 E-value=3.2e+02 Score=23.79 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=33.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 252 ERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 252 err~rR~ikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
++....+..--+.-++.|.+-.+.+.+|+.++..|+.|.++++...
T Consensus 68 eke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 68 DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566677888888888999999999988888887644
No 90
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=22.10 E-value=1.5e+02 Score=23.68 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=8.3
Q ss_pred chhhHHHHHH
Q 020697 119 GEMTLEDFLI 128 (322)
Q Consensus 119 GEMTLEdFLv 128 (322)
|.+|.+||+.
T Consensus 165 G~i~~~eF~~ 174 (180)
T 3mse_B 165 NKISFQEFKD 174 (180)
T ss_dssp CCBCHHHHHH
T ss_pred CeeeHHHHHH
Confidence 7899999974
No 91
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=22.08 E-value=2e+02 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 271 RKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 271 RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+.++....++.+++.|.++.++|++++
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~~~ 161 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLERML 161 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777776665
No 92
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=21.75 E-value=75 Score=23.23 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCCCcHHHHHhhhhccccCCCCCCCccccccCCcccccccccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHH
Q 020697 47 LGSMNLDELLKSVWTAENNFHSEPALSLHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDF 126 (322)
Q Consensus 47 fgSMNmDElLknIwtaEe~q~~~~~~~lqRQgSltLp~tLs~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdF 126 (322)
-|.++.+||.+-+-.. -..++...++++|+.+-... -|.++++||
T Consensus 43 ~G~I~~~El~~~l~~~--------------------g~~~~~~e~~~l~~~~D~d~---------------dG~I~~~EF 87 (94)
T 2kz2_A 43 NGYISAAELRHVMTNL--------------------GEKLTDEEVDEMIREADIDG---------------DGQVNYEEF 87 (94)
T ss_dssp CSCBCHHHHHHHHHHH--------------------TCCCCHHHHHHHHHHHCTTC---------------SSSBCHHHH
T ss_pred cCcCCHHHHHHHHHHh--------------------CCCCCHHHHHHHHHHhCCCC---------------CCcEeHHHH
Confidence 3678888876654221 12345667888888774432 178999999
Q ss_pred HH
Q 020697 127 LI 128 (322)
Q Consensus 127 Lv 128 (322)
+.
T Consensus 88 ~~ 89 (94)
T 2kz2_A 88 VQ 89 (94)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 93
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=21.59 E-value=88 Score=23.66 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=31.8
Q ss_pred CCCCcHHHHHhhhhccccCCCCCCCccccccCCcccccccccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHH
Q 020697 47 LGSMNLDELLKSVWTAENNFHSEPALSLHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDF 126 (322)
Q Consensus 47 fgSMNmDElLknIwtaEe~q~~~~~~~lqRQgSltLp~tLs~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdF 126 (322)
=|.++.+||-.-+-. |--.++.+.|+++++.+-..+ . |.++.+||
T Consensus 50 ~G~I~~~El~~~l~~--------------------lg~~~~~~ei~~l~~~~D~d~---d------------G~I~~~EF 94 (100)
T 2lv7_A 50 NGFISKQELGTAMRS--------------------LGYMPNEVELEVIIQRLDMDG---D------------GQVDFEEF 94 (100)
T ss_dssp SSCBCHHHHHHHHHH--------------------HTCCCCTTTHHHHHHHHCSSC---S------------SSBCHHHH
T ss_pred CCcCCHHHHHHHHHH--------------------hCCCCCHHHHHHHHHHHCCCC---C------------CeEeHHHH
Confidence 477888886544321 112457788999999885543 1 88999999
Q ss_pred HH
Q 020697 127 LI 128 (322)
Q Consensus 127 Lv 128 (322)
+.
T Consensus 95 ~~ 96 (100)
T 2lv7_A 95 VT 96 (100)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 94
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=21.33 E-value=1.4e+02 Score=18.83 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020697 277 QELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+-||++...|+...+.|.+++
T Consensus 4 ealekkcaalesklqalekkl 24 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKL 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666665554
No 95
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.16 E-value=94 Score=28.26 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=31.8
Q ss_pred hhHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 249 KTVERRQKRMI-------KNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 249 ~~~err~rR~i-------kNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+++.+|.+|.+ +=||+...--.......+++..+++.|.+||.+++.++
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~I 171 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKL 171 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566766664 45555555555555556667777788888887776665
No 96
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.92 E-value=90 Score=28.27 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 274 AYTQELENKVSRLEEENERLRRQR 297 (322)
Q Consensus 274 ay~~eLE~kv~~Le~EN~~L~~~~ 297 (322)
+.++....++..|+.||++|++.+
T Consensus 36 ~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 36 EELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455567888999999998875
No 97
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.83 E-value=68 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020697 273 QAYTQELENKVSRLEEENERLRRQ 296 (322)
Q Consensus 273 kay~~eLE~kv~~Le~EN~~L~~~ 296 (322)
..-++.++.++..|++||.+|+.-
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888999999999998763
No 98
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=20.36 E-value=39 Score=28.06 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=22.5
Q ss_pred cccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHHHhc
Q 020697 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAG 131 (322)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAG 131 (322)
|+...++++|+.+-... -|.++.+||++---
T Consensus 81 l~~~el~~I~~~~D~d~---------------dG~Ld~~EF~~am~ 111 (139)
T 2jq6_A 81 LPNTVLGKIWKLADVDK---------------DGLLDDEEFALANH 111 (139)
T ss_dssp CCHHHHHHHHHHHCSSC---------------CSEEEHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCCC---------------CCcCcHHHHHHHHH
Confidence 45678999999875432 17899999986543
No 99
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=20.31 E-value=47 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=19.6
Q ss_pred ccccccHHHHHHHHhhccCCCchhhHHhhhccccchhhHHHHHH
Q 020697 85 DLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLI 128 (322)
Q Consensus 85 tLs~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLv 128 (322)
.++...++++|+.+-... =|.++.+||+.
T Consensus 32 ~~~~~~~~~~~~~~D~~~---------------~g~i~~~ef~~ 60 (66)
T 3li6_A 32 IKNEQLLQLIFKSIDADG---------------NGEIDQNEFAK 60 (66)
T ss_dssp HHHHHHHHHHHHHHCTTC---------------SSSCCHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCC---------------CCCCCHHHHHH
Confidence 345566777887774432 17899999975
Done!