BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020698
(322 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 143/276 (51%), Gaps = 17/276 (6%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPI-EMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++ RFF+VY W+WP P+++C I E G LG VW+P++ D++H MPIITPAY MNS+
Sbjct: 302 IIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLMPIITPAYPSMNST 358
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
Y VS TLQ+M +F G I +IE G+ W L E FF Y Y+++D + + +D
Sbjct: 359 YNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDCYSMNEED 418
Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYI-------DPSKPCPNSAFFWGLS 173
W+GW+ES+ R L +E T + PYP + +P + C ++FF GLS
Sbjct: 419 SRKWEGWIESKLRFLISNLES-TPKMKFAVPYPKGFTNNLHKANNPDQIC--TSFFMGLS 475
Query: 174 RKEVGTSKECQQFDFQGTVKNFRRGIDNY---RVRREGRDIYFSYVCRRHLPSFVFPDGY 230
T + D V F I ++ + + DI Y+ ++ LP+FV +G
Sbjct: 476 FNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFVKDEGP 535
Query: 231 KWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKK 266
+ + +G+P K +S +S+ +L K
Sbjct: 536 EEPVKTTKKRSSTGEPSATRKKLKSENSDNKLNSPK 571
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 122/241 (50%), Gaps = 12/241 (4%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 18 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 77
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
VS+ T VM E+F+ G I +EI L KAEWS LF+ FF+ Y++Y+ + A
Sbjct: 78 NVSVSTRAVMVEEFKQGLAITDEILLVKAEWSKLFDAPNFFQKYKHYILLLASAPTEKQR 137
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + PS+ F W GL K++
Sbjct: 138 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPSPSENSEKEEFRTMWVIGLVFKKM 196
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRH----LPSFVFPDGY 230
S+ +D Q R N ++ I +V R+ LPS V P
Sbjct: 197 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFETEIKIAAMHVKRKQLHQLLPSHVLPKKK 256
Query: 231 K 231
K
Sbjct: 257 K 257
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 123/241 (51%), Gaps = 12/241 (4%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 250 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 309
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
VS+ T VM E+F+ G I +EI LGKAEWS LF+ FF+ Y++Y+ + A
Sbjct: 310 NVSVSTRAVMIEEFKQGLAITDEILLGKAEWSKLFDAPNFFQKYKHYILLLASAPTEKQR 369
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ L H P + PS+ F W GL K++
Sbjct: 370 LEWVGLVESKIRILVGSLEKNEFITL-AHVNPRSFPAPSENMEKEEFRTMWVIGLVFKKM 428
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL----PSFVFPDGY 230
S+ +D Q R N ++ I +V R+ L PS V P
Sbjct: 429 ENSENLSVDLTYDIQSFTDTVDRQAINSKMFETEMKIAAMHVKRKQLHQLQPSHVSPKKK 488
Query: 231 K 231
K
Sbjct: 489 K 489
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 138/291 (47%), Gaps = 15/291 (5%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVG 178
L W G VES+ R L +E++ T + +P +P K + + GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTE 447
Query: 179 TSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRP 235
S+ +D Q R N ++ I +V R+ L + P
Sbjct: 448 NSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL---------P 498
Query: 236 SRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 286
S ++ E VK+ S L ++ + P ++K + ++S
Sbjct: 499 SHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNS 549
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 139/293 (47%), Gaps = 19/293 (6%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFF---W--GLSRKE 176
L W G VES+ R L +E++ + H P + P K P+ F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAP-KESPDREEFRTMWVIGLVFKK 445
Query: 177 VGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWH 233
S+ +D Q R N ++ I +V R+ L +
Sbjct: 446 TENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKRKQLHQLL-------- 497
Query: 234 RPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 286
PS ++ E VK+ S L ++ + P ++K + ++S
Sbjct: 498 -PSHVLQKRKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNS 549
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 137/291 (47%), Gaps = 15/291 (5%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVG 178
L W G VES+ R L +E++ T + +P +P K + + GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTE 447
Query: 179 TSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRP 235
S+ +D Q R N ++ I +V R+ L + P
Sbjct: 448 NSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL---------P 498
Query: 236 SRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 286
+ ++ E VK+ S L ++ + P + K + ++S
Sbjct: 499 NHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNS 549
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 22/234 (9%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
VS T VM E+F+ G + +EI GK++WS L E FF+ Y +Y+ + A+ ++
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386
Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYP--------NKYIDPSKPCPNSAFFW 170
L W G VES+ R L +E++ T + +P N Y+ S +F
Sbjct: 387 LEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNNYV--------SMWFL 438
Query: 171 GLSRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 221
G+ + V ++ +D Q R +N + +EG I ++V ++ L
Sbjct: 439 GIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQL 492
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 22/234 (9%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
VS T VM E+F+ G + +EI GK++WS L E FF+ Y +Y+ + A+ ++
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386
Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYP--------NKYIDPSKPCPNSAFFW 170
L W G VES+ R L +E++ T + +P N Y+ S +F
Sbjct: 387 LEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKANNYV--------SMWFL 438
Query: 171 GLSRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 221
G+ + V ++ +D Q R +N + ++G I ++V ++ L
Sbjct: 439 GIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQL 492
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 132/286 (46%), Gaps = 17/286 (5%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
VS+ T VM E+F+ G I EI L KAEWS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPTEKQH 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ L H P + P + F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKETADKEEFRTMWVIGLVLKKP 446
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I ++ R+ L +
Sbjct: 447 ENSEILSIDLTYDIQSFTDTVYRQAINSKMFEMDMKIAAMHLRRKELHQLL--------- 497
Query: 235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVK 280
P+ ++ E V++ S L E+ + P ++K
Sbjct: 498 PNHVLQKKETHLTESVRLTAVTDSSLLLSIDSENSMTAPSPTGTMK 543
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 118/228 (51%), Gaps = 10/228 (4%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
VS+ T VM E+F+ G I EI L KAEWS LFE FF+ Y++Y+ + A+
Sbjct: 328 NVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKYKHYIVLLASASTEKQH 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFF---W--GLSRKE 176
L W G VES+ R L +E++ L H P + P K P+ F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAP-KENPDMEEFRTMWVIGLGLKK 445
Query: 177 VGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 221
S+ +D Q R N ++ G I ++ R+ L
Sbjct: 446 PDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEMGMKITAMHLRRKEL 493
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 95/156 (60%), Gaps = 2/156 (1%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
+V +FF +YT+W WP PV++ IE G L VW+PR P DR HRMP+ITPAY M +++
Sbjct: 254 IVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMPVITPAYPSMCATH 313
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAAD-ADD 120
++ T +V+ + G+ I +EI GK WS LFE + FF Y+ YL V + D A++
Sbjct: 314 NITSSTQKVILAELSRGSSIMQEIHAGKKTWSDLFEKHSFFYKYKFYLCVVAASIDSAEE 373
Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKY 156
W G++ES+ RQL LK+E G+ HPY +
Sbjct: 374 HKKWSGFIESKLRQLVLKLEV-AEGVEIAHPYVKDF 408
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 96/163 (58%), Gaps = 2/163 (1%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++V++FFR+ QW WP P+++ PIE G L +W+P+ P D++HRMPIITPAY M ++
Sbjct: 253 VIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPIITPAYPSMCAT 312
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
+ ++L T ++ + I ++I + WSALF+ + FF Y++YL + A A+
Sbjct: 313 HNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDFFHRYKHYLTITAAAKTAEA 372
Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPC 163
L W G VES+ R L ++E + + HP+ NK D C
Sbjct: 373 QLKWAGLVESKLRHLVTRLEL-VDAIALAHPF-NKGFDKVYNC 413
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++++RFF + ++W WP PV++ PIE G L VW+P+ +DRSHRMP+ITPAY M ++
Sbjct: 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCAT 313
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
+ ++ T +V+ ++F G +I +I K W+ LFE FF Y+ YL++ +D+
Sbjct: 314 HNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDE 373
Query: 121 L-LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCP 164
L W G VES+ R L +K+E G+ HP+ K + S CP
Sbjct: 374 QHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPF-TKPFESSYCCP 416
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++V +FF +Y+QW WP PV++ IE G L VW+PR DR HRMP+ITPAY M ++
Sbjct: 253 VIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMPVITPAYPSMCAT 312
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADAD- 119
+ ++ T +V+ +FQ G + +I +GK WS L E + FF Y+ YL IVAA
Sbjct: 313 HNITSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDFFFRYKFYLC--IVAATRST 370
Query: 120 --DLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKY 156
+ L + G VES+ R L K+E G+ HPY +
Sbjct: 371 YAEHLKYSGMVESKLRLLVQKLEL-VEGIELAHPYVKSF 408
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 265 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 324
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADA 118
VS+ T VM E+F+ G I +EI L KAEWS LF+ FF+ Y+ Y+ +++A A
Sbjct: 325 NVSVSTRAVMVEEFKQGLAITDEILLLKAEWSKLFDAPNFFQKYK-YVFYNLLAMFA 380
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
L+ +FF+VY+ W W + P+ +G + N K + + I+TPA N+++
Sbjct: 233 LLEKFFQVYSSWDW----LRTPVMLGT------NDDFNDKKKEGVIQILTPASPSENAAF 282
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIEL-GKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
++ +L+++ + + G I E G +W+ LF+ F Y +++ + ++ +
Sbjct: 283 SITKFSLEMIKRELKRGQEIVHEFSSEGVNDWAKLFKPRHLFCGYYIFIEFIVTSSSLEG 342
Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYID 158
L T G ES L +K + +++ + PN ++D
Sbjct: 343 LTTTIGKFESGLVNL-MKGLSEIEEIIEANVIPNGFLD 379
>sp|Q0WVX5|SSY4_ARATH Probable starch synthase 4, chloroplastic/amyloplastic
OS=Arabidopsis thaliana GN=SS4 PE=2 SV=1
Length = 1040
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 70/194 (36%), Gaps = 39/194 (20%)
Query: 21 MCPI-EMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGN 79
M P+ ++G LG V K + + H + II P Y CM L L + E + G
Sbjct: 551 MAPVAKVGGLGDVVAGLGKALQRKGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGK 610
Query: 80 RICEEIELGKAEW-----------SALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWV 128
+I +G E S F F+ +++ + + A +LL G
Sbjct: 611 LYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQFYGEQDDFRRFSYFSRAALELLLQSG-- 668
Query: 129 ESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGL-SRKEVGTSK---ECQ 184
++ CH + ++ P +W L + K + +++ C
Sbjct: 669 -------------KKPDIIHCHDWQTAFVAP--------LYWDLYAPKGLDSARICFTCH 707
Query: 185 QFDFQGTVKNFRRG 198
F++QGT G
Sbjct: 708 NFEYQGTASASELG 721
>sp|Q12472|YD21B_YEAST Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-DR1 PE=1 SV=3
Length = 1770
Score = 32.7 bits (73), Expect = 3.9, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 237 RHFNEQSGKPCEDVKMCQSCSSERQLK------RKKEHEIKEVRPDKSVKQAFISSEVPQ 290
R N +S P ++ +C + + R +H + PDKS K S +
Sbjct: 1086 RSSNSESTTPIISIETKAACDNTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILDD 1145
Query: 291 PVSPGMTTEDPTNNSEVMSSGGHLVSEKGES 321
P +T + PT+ S+V H+ S + S
Sbjct: 1146 LPLPDLTNKSPTDTSDVSKDIPHIHSRQTNS 1176
>sp|Q12113|YO21B_YEAST Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-OR1 PE=3 SV=1
Length = 1770
Score = 32.3 bits (72), Expect = 4.5, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 237 RHFNEQSGKPCEDVKMCQSCSSERQLK------RKKEHEIKEVRPDKSVKQAFISSEVPQ 290
R N +S P ++ +C + + R +H + PDKS K S +
Sbjct: 1086 RSSNSESTTPIISIETKAACDNTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILDD 1145
Query: 291 PVSPGMTTEDPTNNSEVMSSGGHLVSEKGES 321
P +T + PT+ S+V H+ S + S
Sbjct: 1146 LPLPDLTHQSPTDTSDVSKDIPHIHSRQTNS 1176
>sp|Q07791|YD23B_YEAST Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-DR3 PE=3 SV=1
Length = 1770
Score = 31.6 bits (70), Expect = 8.5, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 237 RHFNEQSGKPCEDVKMCQSCSSERQLK------RKKEHEIKEVRPDKSVKQAFISSEVPQ 290
R N +S P ++ C + + R +H + PDKS K S +
Sbjct: 1086 RSSNSESTTPIISIETKAVCDNTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILDD 1145
Query: 291 PVSPGMTTEDPTNNSEVMSSGGHLVSEKGES 321
P +T + PT+ S+V H+ S + S
Sbjct: 1146 LPLPDLTNKSPTDTSDVSKDIPHIHSRQTNS 1176
>sp|C5DEP0|AIM34_LACTC Altered inheritance of mitochondria protein 34, mitochondrial
OS=Lachancea thermotolerans (strain ATCC 56472 / CBS
6340 / NRRL Y-8284) GN=AIM34 PE=3 SV=1
Length = 266
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 245 KPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKS---------VKQAFISSEVPQPVSPG 295
KP +DV+M ++E+ L+ ++ I + P S +++ EV V P
Sbjct: 125 KPVDDVRMPDIAATEKSLETPEQEYIVHITPLSSSADKKPVTRLEKELSVEEVSANVPPA 184
Query: 296 MTTED----------PTNNSEVMSSGGHLVSEKGESE 322
++T D PT+N EV+ L ++K SE
Sbjct: 185 VSTTDHDKVIFQVDAPTDNIEVVDEEAELDADKRASE 221
>sp|P25384|YC21B_YEAST Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-C PE=1 SV=2
Length = 1770
Score = 31.2 bits (69), Expect = 9.9, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 237 RHFNEQSGKPCEDVKMCQSCSSERQLK------RKKEHEIKEVRPDKSVKQAFISSEVPQ 290
R N +S P ++ C + + R +H + PDKS K S +
Sbjct: 1086 RSSNSESTTPIISIETKAVCDNTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILDD 1145
Query: 291 PVSPGMTTEDPTNNSEVMSSGGHLVSEKGES 321
P +T + PT+ S+V H+ S + S
Sbjct: 1146 LPLPDLTHQSPTDTSDVSKDIPHIHSRQTNS 1176
>sp|P44833|LPPB_HAEIN Outer membrane antigenic lipoprotein B OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=lppB PE=3
SV=1
Length = 405
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 258 SERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSPGMTTEDPTNNSEVMSSG---GHL 314
S Q+ + +IK V SVKQ +++ PV P +T N +++ S G G +
Sbjct: 182 SLGQVLKISNCDIKTVTTTVSVKQPAVTASTATPVKPAVTYTPGANGTQIGSDGTIIGPI 241
Query: 315 VSEKGES 321
SE G S
Sbjct: 242 KSEAGTS 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,408,391
Number of Sequences: 539616
Number of extensions: 5677719
Number of successful extensions: 11851
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11817
Number of HSP's gapped (non-prelim): 36
length of query: 322
length of database: 191,569,459
effective HSP length: 117
effective length of query: 205
effective length of database: 128,434,387
effective search space: 26329049335
effective search space used: 26329049335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)