Query 020698
Match_columns 322
No_of_seqs 155 out of 374
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 1.9E-61 6.4E-66 489.2 18.1 238 1-239 267-511 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 1.2E-57 4E-62 462.9 18.1 230 1-234 254-530 (530)
3 4fh3_A Poly(A) RNA polymerase 99.3 5.6E-12 1.9E-16 120.5 7.8 96 2-98 243-348 (349)
4 4e8f_A Poly(A) RNA polymerase 99.0 3.4E-10 1.2E-14 111.5 7.4 103 2-105 271-383 (405)
5 2ikf_A RNA uridylyl transferas 98.8 1E-09 3.6E-14 105.8 2.0 81 2-83 260-349 (353)
6 2b4v_A RNA editing complex pro 97.9 5.7E-06 1.9E-10 83.0 3.8 83 2-86 350-441 (468)
7 3nyb_A Poly(A) RNA polymerase 97.7 1.5E-05 5.2E-10 75.9 4.0 78 2-84 217-298 (323)
8 3pq1_A Poly(A) RNA polymerase; 91.4 0.21 7.1E-06 50.0 5.4 50 2-84 388-437 (464)
9 3hj4_A Minor editosome-associa 90.1 0.57 2E-05 45.7 7.2 52 46-99 329-380 (384)
10 2fly_A Proadrenomedullin N-20 9.2 1E+02 0.0036 18.5 0.8 18 118-135 7-24 (26)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=1.9e-61 Score=489.23 Aligned_cols=238 Identities=34% Similarity=0.542 Sum_probs=206.7
Q ss_pred ChhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020698 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR 80 (322)
Q Consensus 1 mLV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~ 80 (322)
+||.+||.+|++|+||+||+|++++++.+++++|||+.|++||+|+||||||+||++|+|+|||+||+++|++||+||++
T Consensus 267 ~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~ 346 (514)
T 1q79_A 267 TLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLA 346 (514)
T ss_dssp HHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccchhhhccCCCchhccccEEEEEEEeCChhhhhhhhhhhHHHHHHHHHHhhhcCCCceeEcCCCCCCCCCC
Q 020698 81 ICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPS 160 (322)
Q Consensus 81 i~~~i~~~~~~W~~Lfe~~~FF~~Yk~yL~I~v~a~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~~ 160 (322)
++++|..++.+|++||++++||.+|+|||+|+|+|.+++++.+|.||||||||.|+.+||+. ..+..|||||+.|.+..
T Consensus 347 il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~-~~i~~a~~~P~~f~~~~ 425 (514)
T 1q79_A 347 ITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPK 425 (514)
T ss_dssp HHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTS-TTEEEEEECSCCEECCC
T ss_pred HHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccC-CCceeeecCccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999985 34455999999997654
Q ss_pred C----CCCceeEEEceeeccc---CCCCcCcccchHHHHHHHHHhhccccccCCCeEEEEEEeccCCCCCCcCCCCcccC
Q 020698 161 K----PCPNSAFFWGLSRKEV---GTSKECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWH 233 (322)
Q Consensus 161 ~----~~~~~~ffIGL~~~~~---~~~~~~~~~dL~~~v~~F~~~v~~~~~~~~~m~i~v~~vkr~~LP~~V~~~g~~~~ 233 (322)
. ..+.++|||||+++.. ...+.+.++||+.++++|++.|++|..|++||+|+|+|||+++||++||++|+++.
T Consensus 426 ~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp~~v~~~~~~~~ 505 (514)
T 1q79_A 426 ENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKK 505 (514)
T ss_dssp SCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGCC-------
T ss_pred ccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCchhhcchhccCC
Confidence 2 3567899999998752 22235678999999999999999999999999999999999999999999999998
Q ss_pred CCCCCc
Q 020698 234 RPSRHF 239 (322)
Q Consensus 234 ~~~~~~ 239 (322)
|+.+..
T Consensus 506 ~~~~~~ 511 (514)
T 1q79_A 506 KKHSTE 511 (514)
T ss_dssp ------
T ss_pred CCCCcc
Confidence 876553
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.2e-57 Score=462.87 Aligned_cols=230 Identities=30% Similarity=0.572 Sum_probs=209.9
Q ss_pred ChhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020698 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR 80 (322)
Q Consensus 1 mLV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~ 80 (322)
+||.+||.+|++|+|++||+|++++++.+++++|+|+.|++|+.|+||||||+||++|+|+|||+||+++|++||+||++
T Consensus 254 ~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ 333 (530)
T 2hhp_A 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQ 333 (530)
T ss_dssp HHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccchhhhccCCCchhccccEEEEEEEeC-ChhhhhhhhhhhHHHHHHHHHHhhhcCCCceeEcCCCCCCCCC
Q 020698 81 ICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA-DADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDP 159 (322)
Q Consensus 81 i~~~i~~~~~~W~~Lfe~~~FF~~Yk~yL~I~v~a~-~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~ 159 (322)
++++|..++.+|.+||++++||.+|+|||+|++++. +++++..|.||||||+|.|+.+||+ ..++..|||||+.|.+.
T Consensus 334 ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~a~~~p~~f~~~ 412 (530)
T 2hhp_A 334 ITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFTKPFESS 412 (530)
T ss_dssp HHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEEEECSSCEEEE
T ss_pred HHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCceeeecCCcccCcc
Confidence 999999999999999999999999999999999998 9999999999999999999999999 45677799999998421
Q ss_pred C-------------------------------------------CCCCceeEEEceeecccCCCCcCcccchHHHHHHHH
Q 020698 160 S-------------------------------------------KPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFR 196 (322)
Q Consensus 160 ~-------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~~~~dL~~~v~~F~ 196 (322)
. ...+.++|||||+++.. +.++++||+.++++|+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~~di~~~~~~F~ 489 (530)
T 2hhp_A 413 YCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEKVDIHIPCTEFV 489 (530)
T ss_dssp EECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCCCCCHHHHHHHH
T ss_pred ccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCceEeChhHHHHHH
Confidence 0 12345899999999753 2356899999999999
Q ss_pred Hhhccccc-cCCC-eE-EEEEEeccCCCCCCcCCCCcccCC
Q 020698 197 RGIDNYRV-RREG-RD-IYFSYVCRRHLPSFVFPDGYKWHR 234 (322)
Q Consensus 197 ~~v~~~~~-~~~~-m~-i~v~~vkr~~LP~~V~~~g~~~~~ 234 (322)
+.|++|.. |++| |+ |.|+|||++|||++||++|++||+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~~ 530 (530)
T 2hhp_A 490 NLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRPS 530 (530)
T ss_dssp HHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCCC
T ss_pred HHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCCC
Confidence 99999998 8876 89 999999999999999999998874
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=99.26 E-value=5.6e-12 Score=120.51 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=69.2
Q ss_pred hhHHHHHhhc-cCCCCCceeccccccCC---------CCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHH
Q 020698 2 LVSRFFRVYT-QWRWPNPVMMCPIEMGE---------LGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVM 71 (322)
Q Consensus 2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~---------lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI 71 (322)
||..||.+|+ +|+|+++|+......+- .....|++..+..+..++|+|++|.+|.+|+++||+.+++..|
T Consensus 243 LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I 322 (349)
T 4fh3_A 243 LLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRI 322 (349)
T ss_dssp HHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHH
Confidence 7889999998 69999998765332211 1224456666666677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhccC
Q 020698 72 TEQFQCGNRICEEIELGKAEWSALFEH 98 (322)
Q Consensus 72 ~~Ef~Rg~~i~~~i~~~~~~W~~Lfe~ 98 (322)
++||+||++++++.. ....|+.||+.
T Consensus 323 ~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 323 RGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp HHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred HHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 999999999998632 35689999986
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=99.01 E-value=3.4e-10 Score=111.53 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=77.9
Q ss_pred hhHHHHHhhc-cCCCCCceeccccccCCCC--ccccCCCCC-------CCCCCCcceeeccCCCCCCcccccchhHHHHH
Q 020698 2 LVSRFFRVYT-QWRWPNPVMMCPIEMGELG--FSVWDPRKN-------PKDRSHRMPIITPAYHCMNSSYKVSLGTLQVM 71 (322)
Q Consensus 2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~lg--~~vWdPr~n-------~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI 71 (322)
|+..||.+|+ +|+|.+.|+-.....+.+. .+.|+...+ ..++.+.|+|..|..|..|.+.+|+.+++..|
T Consensus 271 LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I 350 (405)
T 4e8f_A 271 LLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRI 350 (405)
T ss_dssp HHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCcEEEEecCCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHH
Confidence 7889999999 8999998765321111121 146876521 12356899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhccCCCchhcc
Q 020698 72 TEQFQCGNRICEEIELGKAEWSALFEHYPFFEAY 105 (322)
Q Consensus 72 ~~Ef~Rg~~i~~~i~~~~~~W~~Lfe~~~FF~~Y 105 (322)
++||+||++++.+.. .+.+|+.||+++++..+.
T Consensus 351 ~~eF~rA~~iL~~~~-~~~~w~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 351 RGEFMAASRLLNSRS-YPIPYDSLFEEAPIPPRR 383 (405)
T ss_dssp HHHHHHHHHHHTCSS-SSCCGGGGGSCCCCC---
T ss_pred HHHHHHHHHHHhhhc-cCCCHHHHhCcCCCcccc
Confidence 999999999998743 257899999999998754
No 5
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=98.80 E-value=1e-09 Score=105.82 Aligned_cols=81 Identities=12% Similarity=0.079 Sum_probs=63.6
Q ss_pred hhHHHHHhhc-cCCCCCceeccccccCCC--CccccCCC------CCCCCCCCcceeeccCCCCCCcccccchhHHHHHH
Q 020698 2 LVSRFFRVYT-QWRWPNPVMMCPIEMGEL--GFSVWDPR------KNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMT 72 (322)
Q Consensus 2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~l--g~~vWdPr------~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~ 72 (322)
|+..||.+|+ +|+|.++|+--.. .+.+ ....|+++ .++.++.+.|+|.+|..|..|.++||+.+++..|+
T Consensus 260 LL~~Ff~~Y~~~fd~~~~vIsi~~-~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~ 338 (353)
T 2ikf_A 260 QVLDFLHFFLHEFDSDKQVISLNR-PGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLR 338 (353)
T ss_dssp HHHHHHHHHHHTSCTTTEEECSSS-SSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhccccCcCceEEEcCC-CcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHH
Confidence 7899999999 8999999764211 1111 11358742 33345678999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 020698 73 EQFQCGNRICE 83 (322)
Q Consensus 73 ~Ef~Rg~~i~~ 83 (322)
+||+||+++|-
T Consensus 339 ~~f~~A~~~~~ 349 (353)
T 2ikf_A 339 RHLEKARDTAL 349 (353)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999998863
No 6
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=97.88 E-value=5.7e-06 Score=82.97 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=62.9
Q ss_pred hhHHHHHhhc-cCCCCCceeccccccCCC---CccccCCCCCC-CCCCCcceeeccCCC----CCCcccccchhHHHHHH
Q 020698 2 LVSRFFRVYT-QWRWPNPVMMCPIEMGEL---GFSVWDPRKNP-KDRSHRMPIITPAYH----CMNSSYKVSLGTLQVMT 72 (322)
Q Consensus 2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~l---g~~vWdPr~n~-~Dr~hlMPIITPayP----~mNSt~NVs~STl~vI~ 72 (322)
|+..||.+|+ +|+|.+.|+-- ..+.. ....|+...|. ....+.|.|..|..| ..|.+.||+..+++.|+
T Consensus 350 LL~~FF~yYg~~Fd~~~~vISi--r~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~ 427 (468)
T 2b4v_A 350 LLHGFFIFYAHHFDYEREVVSL--NRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVK 427 (468)
T ss_dssp HHHHHHHHHHHSSCTTTEEBCS--SSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHccccCCCCcEEEe--cCCcceecccccccccccccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHH
Confidence 7889999999 99999987621 12211 11347642221 112357999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 020698 73 EQFQCGNRICEEIE 86 (322)
Q Consensus 73 ~Ef~Rg~~i~~~i~ 86 (322)
+||++|+++++...
T Consensus 428 ~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 428 QEFLRAAQCMERFL 441 (468)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998754
No 7
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.74 E-value=1.5e-05 Score=75.94 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=58.5
Q ss_pred hhHHHHHhhc-cCCCCCceeccccccCC---CCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHH
Q 020698 2 LVSRFFRVYT-QWRWPNPVMMCPIEMGE---LGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQC 77 (322)
Q Consensus 2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~---lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~R 77 (322)
||..||.+|+ +|+|++.++- +.+|. +.-..|+.- ++.++.+.|+|..|..|..|.+.++ ..++.|++||++
T Consensus 217 LL~~Ff~~Y~~~Fd~~~~~Is--v~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~ 291 (323)
T 3nyb_A 217 LLIEFFELYGKNFGYDDVALG--SSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAG 291 (323)
T ss_dssp HHHHHHHHHHHTCCTTTEEEE--ESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCcEEE--EecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHH
Confidence 7899999999 9999997663 22221 112457542 2234568999999999988888774 457799999999
Q ss_pred HHHHHHH
Q 020698 78 GNRICEE 84 (322)
Q Consensus 78 g~~i~~~ 84 (322)
|++++.+
T Consensus 292 A~~~L~~ 298 (323)
T 3nyb_A 292 AFDLLTN 298 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 8
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.35 E-value=0.21 Score=49.95 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=37.2
Q ss_pred hhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHHH
Q 020698 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRI 81 (322)
Q Consensus 2 LV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~i 81 (322)
|+.-||.+|++++|-+-|+= | ..|.+.||+.+.+..++.|+++|+-|
T Consensus 388 LL~gFF~yYa~FDf~~~vIs---------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~i 434 (464)
T 3pq1_A 388 LLKEFFEYFGNFAXXXXXXX---------------------------X------XXXXXXXVSQSQLQKFVDLARESAWI 434 (464)
T ss_dssp HHHHHHHHGGGCCCCCCCCC---------------------------C------C-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccc---------------------------c------ccccccccCHHHHHHHHHHHHHHHHH
Confidence 68899999999999875541 0 78999999999999999999999999
Q ss_pred HHH
Q 020698 82 CEE 84 (322)
Q Consensus 82 ~~~ 84 (322)
|+.
T Consensus 435 l~~ 437 (464)
T 3pq1_A 435 LQQ 437 (464)
T ss_dssp HHC
T ss_pred Hhh
Confidence 984
No 9
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=90.13 E-value=0.57 Score=45.73 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=39.3
Q ss_pred cceeeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhcCccchhhhccCC
Q 020698 46 RMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHY 99 (322)
Q Consensus 46 lMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~i~~~i~~~~~~W~~Lfe~~ 99 (322)
+..|=- .--..|++..|+.+-...|++||+||++|+.+=+ +....+++|-..
T Consensus 329 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 380 (384)
T 3hj4_A 329 PYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKE-SELKFDEVFRES 380 (384)
T ss_dssp SCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTG-GGCCHHHHTCCC
T ss_pred ceeeee-eccccccceecCccchhHHHHHHHHHHHHHhccc-ccccHHHHhhhc
Confidence 344433 4457899999999999999999999999987522 345677777543
No 10
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=9.24 E-value=1e+02 Score=18.54 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=14.5
Q ss_pred hhhhhhhhhhhHHHHHHH
Q 020698 118 ADDLLTWKGWVESRFRQL 135 (322)
Q Consensus 118 ~e~~~~W~GwVESRlR~L 135 (322)
.+.-.+|..|+-||.+..
T Consensus 7 sefrKKwn~w~lsR~kR~ 24 (26)
T 2fly_A 7 SEFRKKWNKWALSRXXXX 24 (26)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 456789999999998754
Done!