Query 020701
Match_columns 322
No_of_seqs 198 out of 1204
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 100.0 2.7E-46 5.8E-51 350.4 14.6 189 120-320 67-277 (294)
2 COG2119 Predicted membrane pro 100.0 3.8E-43 8.2E-48 315.2 15.5 169 120-320 2-171 (190)
3 PF01169 UPF0016: Uncharacteri 99.8 1.3E-21 2.8E-26 154.1 5.2 69 252-320 1-71 (78)
4 PF01169 UPF0016: Uncharacteri 99.8 6E-20 1.3E-24 144.7 6.3 76 122-209 1-78 (78)
5 COG2119 Predicted membrane pro 99.8 2.9E-19 6.3E-24 161.3 9.2 106 99-216 72-185 (190)
6 KOG2881 Predicted membrane pro 99.3 9.1E-13 2E-17 125.0 3.8 81 124-216 211-291 (294)
7 COG4280 Predicted membrane pro 97.9 3.8E-05 8.3E-10 71.5 8.6 178 120-320 4-185 (236)
8 TIGR02840 spore_YtaF putative 97.4 0.0018 3.9E-08 59.3 10.8 72 140-221 14-87 (206)
9 PRK11469 hypothetical protein; 97.0 0.0021 4.6E-08 58.3 6.7 45 165-220 48-92 (188)
10 PF01810 LysE: LysE type trans 95.5 0.66 1.4E-05 40.5 13.9 70 143-220 13-85 (191)
11 PF03741 TerC: Integral membra 95.2 0.18 3.9E-06 45.7 9.7 132 151-309 29-162 (183)
12 PF03596 Cad: Cadmium resistan 95.1 0.074 1.6E-06 48.9 7.2 52 153-215 25-76 (191)
13 TIGR03718 R_switched_Alx integ 95.0 1.3 2.8E-05 43.6 15.6 103 96-215 40-147 (302)
14 COG1971 Predicted membrane pro 93.6 0.26 5.6E-06 45.6 7.2 46 165-221 48-93 (190)
15 TIGR00145 FTR1 family protein. 91.8 1.9 4.1E-05 41.8 10.8 61 153-216 38-98 (283)
16 TIGR00948 2a75 L-lysine export 90.7 4.4 9.6E-05 35.3 11.1 66 144-217 12-78 (177)
17 TIGR03717 R_switched_YjbE inte 90.3 1.7 3.7E-05 39.3 8.3 117 153-309 33-154 (176)
18 TIGR03716 R_switched_YkoY inte 89.5 1.6 3.5E-05 40.9 7.8 122 151-309 26-152 (215)
19 PF03239 FTR1: Iron permease F 88.7 2.9 6.4E-05 40.4 9.2 155 153-318 35-201 (306)
20 COG0861 TerC Membrane protein 87.7 13 0.00029 35.7 12.8 151 136-310 32-191 (254)
21 TIGR00949 2A76 The Resistance 87.5 7 0.00015 34.0 10.1 63 145-216 10-76 (185)
22 PRK09304 arginine exporter pro 86.3 18 0.0004 32.5 12.4 75 132-216 16-91 (207)
23 PRK10995 inner membrane protei 85.8 2.5 5.5E-05 39.1 6.7 24 194-217 73-96 (221)
24 PRK10019 nickel/cobalt efflux 84.0 10 0.00023 36.9 10.2 81 133-218 29-111 (279)
25 COG4300 CadD Predicted permeas 83.5 2.2 4.8E-05 39.8 5.2 56 152-218 35-90 (205)
26 COG0730 Predicted permeases [G 82.8 8.9 0.00019 35.3 8.9 155 153-318 68-238 (258)
27 PF01914 MarC: MarC family int 82.1 5.9 0.00013 36.4 7.4 107 193-316 68-177 (203)
28 TIGR00779 cad cadmium resistan 81.2 2.6 5.7E-05 39.1 4.8 55 150-215 21-75 (193)
29 PRK10621 hypothetical protein; 79.1 39 0.00085 31.6 12.0 50 156-215 75-124 (266)
30 COG1280 RhtB Putative threonin 78.8 52 0.0011 30.0 13.0 64 144-216 27-94 (208)
31 PF01925 TauE: Sulfite exporte 74.8 11 0.00025 33.6 6.9 46 161-216 66-111 (240)
32 PRK10520 rhtB homoserine/homos 69.4 74 0.0016 28.3 10.8 65 144-216 27-94 (205)
33 PRK11111 hypothetical protein; 68.0 12 0.00026 34.9 5.5 53 154-215 44-96 (214)
34 TIGR00427 membrane protein, Ma 66.7 12 0.00026 34.4 5.3 53 154-215 41-93 (201)
35 PRK10958 leucine export protei 66.7 1E+02 0.0022 28.0 12.3 65 144-217 31-99 (212)
36 COG4280 Predicted membrane pro 64.7 7.6 0.00016 37.0 3.6 67 249-320 3-71 (236)
37 KOG1397 Ca2+/H+ antiporter VCX 63.1 25 0.00054 36.5 7.1 53 158-212 194-256 (441)
38 PF03741 TerC: Integral membra 58.1 23 0.00051 32.1 5.5 57 146-215 127-183 (183)
39 TIGR03716 R_switched_YkoY inte 55.2 32 0.00069 32.3 6.0 59 146-217 117-175 (215)
40 PRK10599 calcium/sodium:proton 53.5 1.3E+02 0.0028 30.6 10.3 36 271-306 273-312 (366)
41 COG0861 TerC Membrane protein 53.4 41 0.0009 32.4 6.5 59 146-217 155-213 (254)
42 COG1283 NptA Na+/phosphate sym 52.1 81 0.0018 33.7 8.9 95 196-302 7-106 (533)
43 COG2095 MarC Multiple antibiot 51.3 40 0.00086 31.4 5.9 56 154-218 41-96 (203)
44 PF12270 Cyt_c_ox_IV: Cytochro 51.0 24 0.00053 31.3 4.2 33 199-231 42-74 (137)
45 PRK10229 threonine efflux syst 46.9 61 0.0013 28.9 6.2 73 135-217 19-94 (206)
46 COG2814 AraJ Arabinose efflux 46.7 2.6E+02 0.0057 28.6 11.3 24 290-313 250-273 (394)
47 TIGR03717 R_switched_YjbE inte 45.6 66 0.0014 29.1 6.3 55 148-215 121-175 (176)
48 PRK10739 putative antibiotic t 41.2 75 0.0016 29.3 6.0 53 154-215 38-90 (197)
49 PF04474 DUF554: Protein of un 40.9 3.3E+02 0.0072 26.0 11.8 53 265-319 126-187 (226)
50 TIGR00704 NaPi_cotrn_rel Na/Pi 40.7 73 0.0016 31.4 6.2 103 196-309 129-236 (307)
51 COG2215 ABC-type uncharacteriz 40.6 3.9E+02 0.0085 26.8 11.7 80 133-218 70-154 (303)
52 COG1971 Predicted membrane pro 39.7 48 0.001 31.0 4.5 43 164-217 146-188 (190)
53 PF04306 DUF456: Protein of un 38.9 2.1E+02 0.0045 25.0 8.1 53 101-157 12-66 (140)
54 TIGR00704 NaPi_cotrn_rel Na/Pi 38.4 1.2E+02 0.0026 29.9 7.3 94 196-301 4-102 (307)
55 PF02659 DUF204: Domain of unk 36.6 80 0.0017 23.5 4.6 35 164-209 33-67 (67)
56 KOG2325 Predicted transporter/ 35.9 5.6E+02 0.012 27.2 14.4 41 250-290 266-307 (488)
57 PRK11469 hypothetical protein; 35.4 53 0.0011 30.0 4.0 49 158-217 138-186 (188)
58 TIGR03718 R_switched_Alx integ 34.0 86 0.0019 31.1 5.5 59 145-216 212-270 (302)
59 PF01914 MarC: MarC family int 30.4 1.1E+02 0.0024 28.1 5.3 68 144-218 130-200 (203)
60 PF02411 MerT: MerT mercuric t 30.2 2.9E+02 0.0064 23.7 7.5 19 197-215 53-71 (116)
61 PRK13499 rhamnose-proton sympo 28.8 1.7E+02 0.0037 29.4 6.7 60 158-220 97-158 (345)
62 PF01810 LysE: LysE type trans 28.3 1.1E+02 0.0023 26.7 4.6 21 196-216 171-191 (191)
63 PF11139 DUF2910: Protein of u 25.4 5.1E+02 0.011 23.4 15.4 59 154-216 32-90 (214)
64 PRK11111 hypothetical protein; 25.4 1.1E+02 0.0023 28.6 4.4 70 144-217 136-205 (214)
65 TIGR00807 malonate_madL malona 25.3 4E+02 0.0088 23.5 7.5 46 163-217 8-55 (125)
66 TIGR02230 ATPase_gene1 F0F1-AT 25.0 1.8E+02 0.0039 24.5 5.2 23 163-188 51-73 (100)
67 PF03817 MadL: Malonate transp 23.5 5.2E+02 0.011 22.9 8.0 22 272-293 75-96 (125)
68 PF03239 FTR1: Iron permease F 23.3 3.2E+02 0.007 26.5 7.4 53 153-216 165-217 (306)
69 COG2095 MarC Multiple antibiot 22.5 1.9E+02 0.0041 27.0 5.3 71 140-218 125-197 (203)
70 TIGR00997 ispZ intracellular s 21.5 2E+02 0.0043 26.4 5.2 44 160-215 25-68 (178)
71 PRK10323 cysteine/O-acetylseri 21.2 5.9E+02 0.013 22.7 15.3 65 144-216 27-94 (195)
72 PF02535 Zip: ZIP Zinc transpo 20.7 6.8E+02 0.015 23.2 13.2 66 146-215 222-287 (317)
73 PF02535 Zip: ZIP Zinc transpo 20.3 3E+02 0.0066 25.5 6.3 57 155-215 2-59 (317)
74 COG1279 Lysine efflux permease 20.2 7.5E+02 0.016 23.5 9.0 25 195-219 70-94 (202)
75 COG1238 Predicted membrane pro 20.1 1.6E+02 0.0035 26.6 4.3 64 249-313 20-83 (161)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.7e-46 Score=350.36 Aligned_cols=189 Identities=36% Similarity=0.564 Sum_probs=159.0
Q ss_pred hHHHHhhhhhHHhhccCchHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHH
Q 020701 120 VDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDI 199 (322)
Q Consensus 120 s~F~~~~~~iifLAELGDKkTf~aa~lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~ 199 (322)
.+|+.++..| |++||||| |||++++|||||+|..||.|++.||++||++|+++|+. .++++|++| +++
T Consensus 67 ~~f~~SiSmI-~vsEiGDK-TFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~a---ap~lipr~~-------T~~ 134 (294)
T KOG2881|consen 67 QGFTASISMI-FVSEIGDK-TFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWA---APNLIPRKY-------TYY 134 (294)
T ss_pred HHHHHhhhee-eeeeccch-HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHh---hhhhchHHH-------HHH
Confidence 6777777665 99999996 99999999999999999999999999999999999986 458899998 899
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCchh--HHHHHHHhhhhcc----------CCCcch---------hhhH-HHHHHHHH
Q 020701 200 AAVCLLVYFGVSTLLDAASTDGLKSED--EQKEAELAVSEFS----------GNGAGI---------IAAA-STIISTFT 257 (322)
Q Consensus 200 ~A~~LFl~FGl~~L~~a~~~~~~~~ed--E~~eaE~~v~~~~----------~~~~g~---------~~~~-~~fl~aF~ 257 (322)
++++||++||+|||+|+|++.+.+++| ||.|+|++-++.+ ++..+. ...+ +.|+++|.
T Consensus 135 ~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFs 214 (294)
T KOG2881|consen 135 LATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFS 214 (294)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHH
Confidence 999999999999999999865543333 3444544432111 001110 0111 47999999
Q ss_pred HHHHhhcCchhHHHHHHHHhhcCCceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHhhhcC
Q 020701 258 LVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL 320 (322)
Q Consensus 258 liFLAE~GDKTQLaTiaLAAr~~p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~~~aG 320 (322)
++|++||||||||+|++|||+.||++|++|+++||.+||++||++|++++++|++|+|.+++|
T Consensus 215 ltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~gg 277 (294)
T KOG2881|consen 215 LTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGG 277 (294)
T ss_pred HHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecc
Confidence 999999999999999999999999999999999999999999999999999999999998877
No 2
>COG2119 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.8e-43 Score=315.18 Aligned_cols=169 Identities=33% Similarity=0.463 Sum_probs=147.7
Q ss_pred hHHHHhhhhhHHhhccCchHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHH
Q 020701 120 VDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDI 199 (322)
Q Consensus 120 s~F~~~~~~iifLAELGDKkTf~aa~lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~ 199 (322)
++|+.++..+ +++|+||||| +++++||+||+|++||.|+.+|++.||.+|+++|++ .+..+|+++ .++
T Consensus 2 ~~~~~s~~~v-~laEiGDKT~-lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~---~~~~~~~~~-------~~~ 69 (190)
T COG2119 2 EALLVSLLMV-ALAEIGDKTQ-LIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHA---AASLLPERP-------LAW 69 (190)
T ss_pred hhHHHHHHHH-HHHHhccHHH-HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH---HhccCchhH-------HHH
Confidence 5677777666 8999999855 667999999999999999999999999999999997 667889998 899
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHhhc
Q 020701 200 AAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAAS 279 (322)
Q Consensus 200 ~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaTiaLAAr~ 279 (322)
..+++|++||+|+++|+-+ ++|+.+. ..++++|.++|+++|++||||||||+|++||++|
T Consensus 70 ~~~~~Flafav~~l~edk~------~~~e~~~--------------~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~ 129 (190)
T COG2119 70 ASGVLFLAFAVWMLIEDKE------DDEEAQA--------------ASPRGVFVTTFITFFLAELGDKTQIATIALAADY 129 (190)
T ss_pred HHHHHHHHHHHHHhccccc------ccccccc--------------cccccHHHHHHHHHHHHHhccHHHHHHHHHhhcC
Confidence 9999999999999999322 1221110 1234689999999999999999999999999997
Q ss_pred C-CceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHhhhcC
Q 020701 280 S-PLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL 320 (322)
Q Consensus 280 ~-p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~~~aG 320 (322)
+ |+.|++|+++||++|++++|++|+++++|+|+|+++.++|
T Consensus 130 ~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aa 171 (190)
T COG2119 130 HSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAA 171 (190)
T ss_pred CCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 5 5999999999999999999999999999999999999876
No 3
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.84 E-value=1.3e-21 Score=154.09 Aligned_cols=69 Identities=41% Similarity=0.503 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHhhc--CCceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHhhhcC
Q 020701 252 IISTFTLVFVAEWGDKSFFSTIALAAAS--SPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL 320 (322)
Q Consensus 252 fl~aF~liFLAE~GDKTQLaTiaLAAr~--~p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~~~aG 320 (322)
|+++|.++|+||||||||++|++||+|| +|+.|++|+.+|++++++++|++|+++.+++|++++++++|
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~ 71 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAG 71 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 5789999999999999999999999999 89999999999999999999999999999999999999986
No 4
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.80 E-value=6e-20 Score=144.68 Aligned_cols=76 Identities=37% Similarity=0.524 Sum_probs=68.7
Q ss_pred HHHhhhhhHHhhccCchHHHHHHHHHHccC--CcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHH
Q 020701 122 FASGLQSFPFLGDLGDISRGFASALLAARN--SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDI 199 (322)
Q Consensus 122 F~~~~~~iifLAELGDKkTf~aa~lLAar~--~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~ 199 (322)
|++++..+ |++|+||||| ++++.||+|| +|+.|++|+++|++++|+++|++|++ +.+++|+++ +++
T Consensus 1 F~~sf~~i-flaE~GDKTQ-l~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~---l~~~ip~~~-------i~~ 68 (78)
T PF01169_consen 1 FLTSFLLI-FLAELGDKTQ-LATIALAARYPRNPWPVFAGATLALALATGLAVLLGSW---LASRIPERY-------IKW 68 (78)
T ss_pred CHHHHHHH-HHHHhCcHHH-HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHH-------HHH
Confidence 55667666 9999999866 6789999999 79999999999999999999999987 678999998 999
Q ss_pred HHHHHHHHHH
Q 020701 200 AAVCLLVYFG 209 (322)
Q Consensus 200 ~A~~LFl~FG 209 (322)
+++++|+.||
T Consensus 69 ~~~~lFl~fG 78 (78)
T PF01169_consen 69 VAGALFLLFG 78 (78)
T ss_pred HHHHHHHHHC
Confidence 9999999997
No 5
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.79 E-value=2.9e-19 Score=161.27 Aligned_cols=106 Identities=28% Similarity=0.408 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhcCCcc-------hhhhhHHHHhhhhhHHhhccCchHHHHHHHHHHccCCc-chhhHHHHHHHHHHHHH
Q 020701 99 IKFVMFFGLLTLQGSQT-------AVAAVDFASGLQSFPFLGDLGDISRGFASALLAARNSA-ATVFAGTFGALAAMTVI 170 (322)
Q Consensus 99 ~~~~l~fg~~tl~~~~~-------~~~~s~F~~~~~~iifLAELGDKkTf~aa~lLAar~~~-~~Vf~Gs~~AL~lmt~L 170 (322)
-..|++||+|+++++.. +.....|..+|..+ |++|+||||| ++|+.||++|+. |.||+|+.+|+++++++
T Consensus 72 ~~~Flafav~~l~edk~~~~e~~~~~~~~~f~~tfi~~-FlaE~GDKTQ-iATIaLaA~~~~~~~V~~Gt~lg~~l~s~l 149 (190)
T COG2119 72 GVLFLAFAVWMLIEDKEDDEEAQAASPRGVFVTTFITF-FLAELGDKTQ-IATIALAADYHSPWAVFAGTTLGMILASVL 149 (190)
T ss_pred HHHHHHHHHHHhcccccccccccccccccHHHHHHHHH-HHHHhccHHH-HHHHHHhhcCCCceeeehhhHHHHHHHHHH
Confidence 45799999999999864 23345899988887 9999999866 899999999985 99999999999999999
Q ss_pred HHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701 171 SVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 171 SV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a 216 (322)
+|++|++ +++.+|.+. ++.+++++|++||+..+|+.
T Consensus 150 aVl~G~~---ia~ki~~r~-------l~~~aallFl~fal~~~~~~ 185 (190)
T COG2119 150 AVLLGKL---IAGKLPERL-------LRFIAALLFLIFALVLLWQV 185 (190)
T ss_pred HHHHHHH---HHccCCHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 9999997 679999997 99999999999999999984
No 6
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.31 E-value=9.1e-13 Score=125.03 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=73.0
Q ss_pred HhhhhhHHhhccCchHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHH
Q 020701 124 SGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVC 203 (322)
Q Consensus 124 ~~~~~iifLAELGDKkTf~aa~lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~ 203 (322)
=+|.+ +|++|||||+| ++++.||++-+++.|++|..+++.++|++||+.|+. +++.|+.|. +.+..++
T Consensus 211 kaFsl-tF~aEwGDRSQ-laTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~---lAskIS~rt-------Vt~~ggi 278 (294)
T KOG2881|consen 211 KAFSL-TFLAEWGDRSQ-LATIALAADENPLGVAIGAIIGHALCTGLAVIGGKY---LASKISVRT-------VTLIGGI 278 (294)
T ss_pred HHHHH-HHHHHhccHHH-HHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHH---HhhhheeEE-------EEEecch
Confidence 34544 59999999988 789999999999999999999999999999999985 789999885 7789999
Q ss_pred HHHHHHHHHhhcc
Q 020701 204 LLVYFGVSTLLDA 216 (322)
Q Consensus 204 LFl~FGl~~L~~a 216 (322)
+|++||+..++.+
T Consensus 279 ~Fi~Fgl~~i~~~ 291 (294)
T KOG2881|consen 279 LFIIFGLVYIFQG 291 (294)
T ss_pred hHHHHHHHHHhcC
Confidence 9999999999874
No 7
>COG4280 Predicted membrane protein [Function unknown]
Probab=97.95 E-value=3.8e-05 Score=71.51 Aligned_cols=178 Identities=24% Similarity=0.266 Sum_probs=112.6
Q ss_pred hHHHHhhhhh-HHhhccCchHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHH
Q 020701 120 VDFASGLQSF-PFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDD 198 (322)
Q Consensus 120 s~F~~~~~~i-ifLAELGDKkTf~aa~lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~ 198 (322)
|-|++++.+- +=+-|.+- +++.-..-|++..-+.|+.+++++.-.++.++|..+ .++|-.+ .+
T Consensus 4 si~lAAl~sSlvElvEa~a-----Ia~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L----~lvPln~-------lq 67 (236)
T COG4280 4 SIFLAALGSSLVELVEAGA-----IAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL----YLVPLNY-------LQ 67 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce----eeeechH-------HH
Confidence 4566666543 12344443 234556667899999999999999999999999964 6789887 99
Q ss_pred HHHHHHHHHHHHHHhhccccC-CCC-CchhHHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 020701 199 IAAVCLLVYFGVSTLLDAAST-DGL-KSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALA 276 (322)
Q Consensus 199 ~~A~~LFl~FGl~~L~~a~~~-~~~-~~edE~~eaE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaTiaLA 276 (322)
++++++.++||.+-++.+.+. .+. +..+|++-+|-.+.+-+.+ | . .+-.++.+|-.+.+= |=---++.++|.
T Consensus 68 iv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~leE~~~ldq~e~--g-~-~~la~l~~fk~v~Le--glEv~~iVialg 141 (236)
T COG4280 68 IVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEKLEEGIVLDQEEE--G-F-SKLALLVVFKVVALE--GLEVSLIVIALG 141 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhccCchhhHhhhhhcccccc--c-c-hhhhHHHHhHHHHHh--hheeeeeeeeec
Confidence 999999999999999887431 110 1111222112222222212 2 1 122344444333221 223345566666
Q ss_pred hhc-CCceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHhhhcC
Q 020701 277 AAS-SPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL 320 (322)
Q Consensus 277 Ar~-~p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~~~aG 320 (322)
+.+ .+..-..|+..|.++.-.++...-..++ ++|+..+|+.+|
T Consensus 142 aa~sqwleAi~gagfA~vlvlvl~~~lh~pla-rvpe~~lKfvag 185 (236)
T COG4280 142 AASSQWLEAIMGAGFASVLVLVLTAILHSPLA-RVPEPHLKFVAG 185 (236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHh-hCCchhHHHHHH
Confidence 665 4556777777777777777777777775 589999998876
No 8
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=97.38 E-value=0.0018 Score=59.35 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=50.7
Q ss_pred HHHHHHHHHccCCc--chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701 140 RGFASALLAARNSA--ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 140 Tf~aa~lLAar~~~--~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
.|-+.+...++.-+ +..-+-......+|+.++..+|+. +.+++|.++ .++++++++++.|+||++|++
T Consensus 14 af~vgi~~G~~~~~~~~~~~l~ig~~~~~~~~lg~~~G~~---~~~~i~~~~-------~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 14 SFGVGIAYGLRKIKIPFLSNLIIAVISGLFIFISMLLGKF---LAKFLPPKV-------TEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhchhh-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444445544322 222233333445899999999986 668898876 799999999999999999998
Q ss_pred cCCC
Q 020701 218 STDG 221 (322)
Q Consensus 218 ~~~~ 221 (322)
+.++
T Consensus 84 ~~~~ 87 (206)
T TIGR02840 84 RPKK 87 (206)
T ss_pred hhhc
Confidence 7443
No 9
>PRK11469 hypothetical protein; Provisional
Probab=96.96 E-value=0.0021 Score=58.32 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCC
Q 020701 165 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTD 220 (322)
Q Consensus 165 ~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~ 220 (322)
.+|+.++-.+|++ +.+++|. + .+|++..++++.|+||++|+++.+
T Consensus 48 ~~m~~~g~~~G~~---l~~~i~~-~-------~~~i~~~lL~~lG~~mi~e~~~~~ 92 (188)
T PRK11469 48 TLTPLIGWGMGML---ASRFVLE-W-------NHWIAFVLLIFLGGRMIIEGFRGA 92 (188)
T ss_pred HHHHHHHHHHHHH---HHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788888899986 4566665 4 789999999999999999998744
No 10
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=95.45 E-value=0.66 Score=40.48 Aligned_cols=70 Identities=16% Similarity=0.088 Sum_probs=46.6
Q ss_pred HHHHHHccCCc---chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccC
Q 020701 143 ASALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAST 219 (322)
Q Consensus 143 aa~lLAar~~~---~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~ 219 (322)
..+--++++++ ..+.+|...+-.+...+++..-.. +.+..|.- ..++++++++.++++|.++++...+.
T Consensus 13 ~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~---l~~~~~~~-----~~~l~~~G~~~L~~lg~~~~~~~~~~ 84 (191)
T PF01810_consen 13 LVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSA---LLKSSPWL-----FMILKLLGALYLLYLGYKLLRSKFSS 84 (191)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChHH-----HHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 34566677764 466677777777776666555443 32333433 24689999999999999999986554
Q ss_pred C
Q 020701 220 D 220 (322)
Q Consensus 220 ~ 220 (322)
+
T Consensus 85 ~ 85 (191)
T PF01810_consen 85 K 85 (191)
T ss_pred c
Confidence 3
No 11
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=95.16 E-value=0.18 Score=45.70 Aligned_cols=132 Identities=18% Similarity=0.279 Sum_probs=80.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHH
Q 020701 151 NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKE 230 (322)
Q Consensus 151 ~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~e 230 (322)
++++..+.|..+|+++=.++-......+ +.. . .++++.|+..++-|++++++..+.|. +++..+
T Consensus 29 ~r~kal~~Gi~~A~~lR~~~i~~~~~ll----~~~--~-------~i~~igG~~Ll~~a~k~~~~~~~~d~---~~~~~~ 92 (183)
T PF03741_consen 29 QRRKALFWGIIGAIVLRIIFIFLASWLL----SIF--P-------WILLIGGLFLLYIAIKLLHEERDEDP---ENAEVE 92 (183)
T ss_pred HhhhhHHHhHHHHHHHHHHHHHHHHHHH----HHH--H-------HHHHHHHHHHHHHHHHHHHhcccccc---chhhhh
Confidence 3578999999999966555544444332 222 2 37888888889999999988441111 111111
Q ss_pred HHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhc--CchhHHHHHHHHhhcCCceEeeHHHHHHHHHHHHHHHHHHHhhh
Q 020701 231 AELAVSEFSGNGAGIIAAASTIISTFTLVFVAEW--GDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGT 308 (322)
Q Consensus 231 aE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~--GDKTQLaTiaLAAr~~p~~V~~Ga~la~~l~t~LAVl~G~~La~ 308 (322)
.+ ++... .....++.+...+-++-+ -=-+=++.++++ .+++.++.|.+.+....-..+-.+.+++.+
T Consensus 93 ~~---~~~~~------~~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~~ 161 (183)
T PF03741_consen 93 EE---KKFFP------VSKSSLWLAVIQIELADLVFSLDSVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLER 161 (183)
T ss_pred hh---hcccc------chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 01100 111345555544433311 112445666666 788999999999999999999999998876
Q ss_pred c
Q 020701 309 F 309 (322)
Q Consensus 309 ~ 309 (322)
+
T Consensus 162 ~ 162 (183)
T PF03741_consen 162 F 162 (183)
T ss_pred H
Confidence 5
No 12
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=95.12 E-value=0.074 Score=48.89 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=42.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
++.|++|=.++..+.-++|.+.+..+ .++|++| +--+-|.+=+++|+|.++.
T Consensus 25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l----~~ip~~w-------iLGlLGliPI~lGi~~l~~ 76 (191)
T PF03596_consen 25 RRQIVIGQYLGFTILVLASLLGAFGL----LFIPPEW-------ILGLLGLIPIYLGIKALFS 76 (191)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH----HhCCHHH-------HHHHHHHHHHHHHHHHHHc
Confidence 78999999999999999999888753 5789887 4334555678999998876
No 13
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=94.96 E-value=1.3 Score=43.63 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHhcCCcchhhhhHHHHhhhhhHHhhccCchHHHHHHHHHHc-----cCCcchhhHHHHHHHHHHHHH
Q 020701 96 SGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASALLAA-----RNSAATVFAGTFGALAAMTVI 170 (322)
Q Consensus 96 ~~~~~~~l~fg~~tl~~~~~~~~~s~F~~~~~~iifLAELGDKkTf~aa~lLAa-----r~~~~~Vf~Gs~~AL~lmt~L 170 (322)
.......++||.+.+.-. .......|+++...=..|| +|. =+..+++.+. +++++..+.|..+|+++ =++
T Consensus 40 ~~~v~la~~F~~~i~~~~-g~~~~~~f~tg~llE~~LS--vDN-~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvl-R~i 114 (302)
T TIGR03718 40 AFWVSLALLFGGGVWFYL-GGEAALEFLTGYLIEKSLS--VDN-LFVFLLIFSYFAVPREYQHRVLFWGILGALVL-RAI 114 (302)
T ss_pred HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH--hHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHH
Confidence 445566788887666532 1334456776554322222 685 5545555554 35578999999999865 445
Q ss_pred HHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 171 SVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 171 SV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
-+.+|.++ + +.+| + +.++.|+..++-|++++++
T Consensus 115 ~i~~g~~L--i-~~f~--w-------i~~ifG~fLi~~a~k~~~~ 147 (302)
T TIGR03718 115 FIALGAAL--I-EQFH--W-------VLYIFGAFLLYTGIKMLFE 147 (302)
T ss_pred HHHHHHHH--H-HHhH--H-------HHHHHHHHHHHHHHHHHhh
Confidence 56666552 2 2222 2 6777777778888888876
No 14
>COG1971 Predicted membrane protein [Function unknown]
Probab=93.61 E-value=0.26 Score=45.62 Aligned_cols=46 Identities=15% Similarity=0.405 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCCC
Q 020701 165 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDG 221 (322)
Q Consensus 165 ~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~~ 221 (322)
++|.++.-+.|..+ ++++ ..+ .+|++++++.+.|+||+++++++++
T Consensus 48 ~i~pliG~~~g~~~---s~~i-~~~-------~~wigf~lL~~lG~~mI~e~f~~~~ 93 (190)
T COG1971 48 AIMPLIGWFIGKFL---STFI-AEW-------AHWIGFVLLIILGLKMIIEGFKNEE 93 (190)
T ss_pred HHHHHHHHHHHHHH---HHHH-HHH-------HHHHHHHHHHHHHHHHHHHHhchhh
Confidence 45566666666543 2222 344 7899999999999999999998654
No 15
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=91.79 E-value=1.9 Score=41.83 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=39.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701 153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a 216 (322)
+.+|+.|+.+|+++.-++++++-..+..++.-..+++ -.-+..++|+++..++++||...+
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el---~eg~~~lvAv~~l~~m~~Wm~~~~ 98 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKEL---LEGIFGVIAVVMLSYMGLWMLRMQ 98 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999998887777776654321111110110 012366788889999999999653
No 16
>TIGR00948 2a75 L-lysine exporter.
Probab=90.65 E-value=4.4 Score=35.33 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=43.5
Q ss_pred HHHHHccCCc-chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701 144 SALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 144 a~lLAar~~~-~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
.+-.++++++ ..+-+|...|..+...++++.-.. +-+..|.-+ ..+++++++..+++|..+++.+.
T Consensus 12 vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~---ll~~~p~~~-----~~l~~~Ga~YLlylg~~~~r~~~ 78 (177)
T TIGR00948 12 VLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAA---LLAASPILL-----AVLTWGGALFLLWYGFLAAKTAW 78 (177)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666654 467788888887777665554433 223345443 35788888888999999998754
No 17
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=90.27 E-value=1.7 Score=39.26 Aligned_cols=117 Identities=17% Similarity=0.237 Sum_probs=73.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHHHH
Q 020701 153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAE 232 (322)
Q Consensus 153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE 232 (322)
++..+.|...|+++.-+........+ + +| ..++++|++.++.|+.|+.+ +.++++. ++
T Consensus 33 ~~~~~~G~~~A~vlr~if~~~G~~ll----~-~~---------~~~iaGGllLl~ia~~ml~~----~~~~~~~---~~- 90 (176)
T TIGR03717 33 KKAIFWGTAGAIVLRILLTAVAVYLL----A-IP---------FLKLIGGLLLLWIGWKLLLE----EEEEQGG---DV- 90 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----H-hH---------HHHHHHHHHHHHHHHHHHhc----ccccccc---cc-
Confidence 57899999999998877766665443 2 22 37899999999999999876 2111110 00
Q ss_pred HhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhH-----HHHHHHHhhcCCceEeeHHHHHHHHHHHHHHHHHHHhh
Q 020701 233 LAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSF-----FSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLG 307 (322)
Q Consensus 233 ~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQ-----LaTiaLAAr~~p~~V~~Ga~la~~l~t~LAVl~G~~La 307 (322)
+ +...++.+...+- +=|-.+ ++.++.+ +.+.+.++.|.+++..+.-..+-++.+++.
T Consensus 91 ----~----------~~~~~~~~v~~I~---~~D~~fS~DsV~a~~~~~-~~~~~li~~g~~i~i~~m~~~s~~~~~~~~ 152 (176)
T TIGR03717 91 ----K----------GSTTLWAAIKTIV---IADAVMSLDNVLAVAGAA-HGHLGLLIFGLLLSIPIIVWGSTLILKLMD 152 (176)
T ss_pred ----c----------ccCcHHHHHHHHH---HHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0123455544433 334332 3333332 347788888888888888888887777776
Q ss_pred hc
Q 020701 308 TF 309 (322)
Q Consensus 308 ~~ 309 (322)
++
T Consensus 153 ~~ 154 (176)
T TIGR03717 153 RF 154 (176)
T ss_pred HH
Confidence 54
No 18
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=89.52 E-value=1.6 Score=40.90 Aligned_cols=122 Identities=21% Similarity=0.244 Sum_probs=73.9
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHH
Q 020701 151 NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKE 230 (322)
Q Consensus 151 ~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~e 230 (322)
++++..+.|..+|+++=-++.......+ + +| + ++++.|++.++-|.+++++ +++++++++
T Consensus 26 ~r~~al~~Gi~gAivlR~i~i~~~~~Ll----~-~~--~-------l~~iGG~~Ll~~~~k~l~~----~~~~~~~~~-- 85 (215)
T TIGR03716 26 QRKKALFYGLIGAYVFRFIALFLASFLI----K-FW--W-------IKAIGALYLLYLAIKHFRK----KKKGKEDEE-- 85 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HH--H-------HHHHHHHHHHHHHHHHHHh----ccccccccc--
Confidence 3468899999999887665554444322 2 23 3 6788888888888888876 221111111
Q ss_pred HHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCch-----hHHHHHHHHhhcCCceEeeHHHHHHHHHHHHHHHHHHH
Q 020701 231 AELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDK-----SFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSL 305 (322)
Q Consensus 231 aE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDK-----TQLaTiaLAAr~~p~~V~~Ga~la~~l~t~LAVl~G~~ 305 (322)
.+ . +++ + ..|+.+...+ |.=|- +=++.++++ .+++.++.|.+.+....-..+-++.++
T Consensus 86 ~~----~-~~~--~-----~~f~~av~~I---~~~DlvFSlDSV~A~~git--~~~~ii~~g~~~sIl~lr~~s~~l~~l 148 (215)
T TIGR03716 86 AE----K-KKA--H-----SGFWRTVLKV---ELMDIAFSVDSILAAVALS--GQFWVVFLGGIIGILIMRFAATIFVKL 148 (215)
T ss_pred cc----c-ccc--c-----chHHHHHHHH---HHHHHHHHhhhHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 000 1 2345444333 33343 334555553 788999999999998888888888887
Q ss_pred hhhc
Q 020701 306 LGTF 309 (322)
Q Consensus 306 La~~ 309 (322)
+.++
T Consensus 149 i~r~ 152 (215)
T TIGR03716 149 LERF 152 (215)
T ss_pred HHHH
Confidence 7654
No 19
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=88.68 E-value=2.9 Score=40.41 Aligned_cols=155 Identities=22% Similarity=0.163 Sum_probs=87.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCc----hhHHHHHHHHHHHHHHHHhhccccCCCCCchhHH
Q 020701 153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDL----PIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQ 228 (322)
Q Consensus 153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~----~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~ 228 (322)
..+|+.|+..|+++.-.+++++-... ..++..+....- -.+..++.++-...++||.+.+.+..++ -|+
T Consensus 35 ~~~V~~G~~~g~~~s~~~~~~~~~~~----~~~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~~~~~~~---~~~ 107 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASLVIGAVFAVIF----YTLSGDYWGISEELFEGAISLIAVALITWMVFWMRRHGRKMKGE---WED 107 (306)
T ss_pred hheeeecHhHHHHHHHHHHHHHHHHH----HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh---HHH
Confidence 48999999999998888887777643 334421100000 1245667777888999999864332221 111
Q ss_pred HHHHHhhhhc------cCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHhhcC--CceEeeHHHHHHHHHHHHHH
Q 020701 229 KEAELAVSEF------SGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASS--PLGVIGGALAGHVVATLLAV 300 (322)
Q Consensus 229 ~eaE~~v~~~------~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaTiaLAAr~~--p~~V~~Ga~la~~l~t~LAV 300 (322)
+ .+..+++. ..+.++....+..++.+|+.+ +=| |=-|=+...++.+..+ ...+..|+.+|.++..+++.
T Consensus 108 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~ 184 (306)
T PF03239_consen 108 K-LAKALSSGSEDARASQKDEGGGSKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGW 184 (306)
T ss_pred H-HHHHHhhccchhhhhhhccccchhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 1 00111100 001111122345566666432 222 5556666666666643 57788888888888888888
Q ss_pred HHHHHhhhcCCHHHHhhh
Q 020701 301 LGGSLLGTFLSEKVYSNF 318 (322)
Q Consensus 301 l~G~~La~~lp~r~I~~~ 318 (322)
++-+.. .++|.+..-.+
T Consensus 185 ~~~~~~-~~i~~~~~f~~ 201 (306)
T PF03239_consen 185 LLYRGL-IRISLRSFFII 201 (306)
T ss_pred HHHHHH-HhcChHHHHHH
Confidence 876654 45777655443
No 20
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=87.70 E-value=13 Score=35.70 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=85.6
Q ss_pred CchHHHHHHHHHHccC----CcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHH
Q 020701 136 GDISRGFASALLAARN----SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 211 (322)
Q Consensus 136 GDKkTf~aa~lLAar~----~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~ 211 (322)
+|. =+++ ++++.+. +++..+.|..+|+++=.+ -...|.|+ -+ ++.. .-++.+..+++-++.
T Consensus 32 iDN-~ivi-ai~~~~Lp~~qr~ral~~Gl~~A~v~R~~-ll~~~s~L---l~-l~~~--------l~~~fg~~L~~~~~~ 96 (254)
T COG0861 32 IDN-AIVI-AILASKLPPKQRKKALFIGLAGALVLRII-LLASISWL---LT-LTQP--------LLYIFGLYLLWRDIK 96 (254)
T ss_pred hhH-HHHH-HHHHhhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HH-hhHH--------HHHHHHHHHHHHHHH
Confidence 685 4443 3555554 367899999999876544 44555553 12 1211 223456667788888
Q ss_pred HhhccccCCCCCchhHHHHHHHhhhhccCCC---cchhhhHHHHHHHHHHHHHhhc--CchhHHHHHHHHhhcCCceEee
Q 020701 212 TLLDAASTDGLKSEDEQKEAELAVSEFSGNG---AGIIAAASTIISTFTLVFVAEW--GDKSFFSTIALAAASSPLGVIG 286 (322)
Q Consensus 212 ~L~~a~~~~~~~~edE~~eaE~~v~~~~~~~---~g~~~~~~~fl~aF~liFLAE~--GDKTQLaTiaLAAr~~p~~V~~ 286 (322)
+++++... +.++..+...+.+++. .+......+|+.+...|-++-. .=-|-++.++++ .+++.+++
T Consensus 97 ll~~~~~~-------~~k~~~~~~~~~~~~~~~~~~~~~~~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~--~~~~im~~ 167 (254)
T COG0861 97 LLLGGLFL-------LFKATKELHERLEGEEFFVNGKLKKATPFWGAIIQIELADLVFSLDSVIAAVGMA--GHPFVMVT 167 (254)
T ss_pred HHhcchhH-------HHHHHHHHhhhhccccccccccccccCcHHHHHHHHHHHHHHHhhhHHHHHHHHh--cCchHHHH
Confidence 88774221 1111111101111111 0000023457777766555532 234556666666 77899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 020701 287 GALAGHVVATLLAVLGGSLLGTFL 310 (322)
Q Consensus 287 Ga~la~~l~t~LAVl~G~~La~~l 310 (322)
|.+.|..++=..+=.+.+++.++-
T Consensus 168 a~i~aI~~m~~aa~~l~~ll~r~p 191 (254)
T COG0861 168 AVIFAILVMRFAAFLLARLLERHP 191 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHch
Confidence 999999999888888888886653
No 21
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=87.51 E-value=7 Score=34.04 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=41.6
Q ss_pred HHHHccCC---cchhhHHHHHHHHHHHHHHHH-HhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701 145 ALLAARNS---AATVFAGTFGALAAMTVISVI-LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 145 ~lLAar~~---~~~Vf~Gs~~AL~lmt~LSV~-lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a 216 (322)
+--+++++ .+.+.+|..+|..+...+++. ++.. -+..|.-. .++++++++..+++|+.++++.
T Consensus 10 ~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l----~~~~~~~~-----~~l~~~Ga~yLl~lg~~~~~~~ 76 (185)
T TIGR00949 10 MQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVL----ISKSVILF-----TVIKWLGGAYLIYLGIKMLRKK 76 (185)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHH-----HHHHHHHHHHHHHHHHHHHHcc
Confidence 44555554 356778888888887776665 3333 23345322 3578888888899999999864
No 22
>PRK09304 arginine exporter protein; Provisional
Probab=86.27 E-value=18 Score=32.54 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=44.7
Q ss_pred hhccCchHHHHHHHHHHccCC-cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHH
Q 020701 132 LGDLGDISRGFASALLAARNS-AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGV 210 (322)
Q Consensus 132 LAELGDKkTf~aa~lLAar~~-~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl 210 (322)
..=-|- ..+..+--+.+++ ......|...+..+...+++..-.. +-+..|.-. .++++++++-.+++|.
T Consensus 16 ~~tPGP--~~~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~---Ll~~~p~~~-----~~l~~~Ga~YLlyLg~ 85 (207)
T PRK09304 16 ILPLGP--QNAFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSA---LLMQSPWLL-----ALVTWGGVAFLLWYGF 85 (207)
T ss_pred HhccCh--HHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 345555 3344455566654 3466667777666665554433322 223335433 4578888888899999
Q ss_pred HHhhcc
Q 020701 211 STLLDA 216 (322)
Q Consensus 211 ~~L~~a 216 (322)
.+++..
T Consensus 86 ~~~rs~ 91 (207)
T PRK09304 86 GAFKTA 91 (207)
T ss_pred HHHHHh
Confidence 999874
No 23
>PRK10995 inner membrane protein; Provisional
Probab=85.76 E-value=2.5 Score=39.08 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhccc
Q 020701 194 LPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 194 ~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
.+-.+++++++.+++|+.|+++..
T Consensus 73 ~~a~rIaGGilL~~igi~ml~~~~ 96 (221)
T PRK10995 73 IPGLRIAGGLIVAFIGFRMLFPQQ 96 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345899999999999999997643
No 24
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=83.99 E-value=10 Score=36.93 Aligned_cols=81 Identities=10% Similarity=0.125 Sum_probs=49.8
Q ss_pred hccCchHHHHHHHHHHcc-CC-cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHH
Q 020701 133 GDLGDISRGFASALLAAR-NS-AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGV 210 (322)
Q Consensus 133 AELGDKkTf~aa~lLAar-~~-~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl 210 (322)
.|=|--|..+++ -++++ -+ +..+.+|...++.= ++...+++.+.-++.+.+|.. ...++...+.+++.+.+|+
T Consensus 29 lgPGHGKavi~s-Ylv~~~~~~~~a~~lgl~~~l~h-ta~~lv~~~~~~~l~~~~~~~---~~~~~le~~S~~lii~lGl 103 (279)
T PRK10019 29 LEPGHSKTMMAA-FIIAIKGTIKQAVMLGLAATISH-TAVVWLIAFGGMYLSRRFTAQ---SAEPWLQLISAVIIISTAF 103 (279)
T ss_pred cCCCcchHHHhh-hhhcCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHH
Confidence 476776676655 55554 34 56788887776654 333333332211234455521 1236688999999999999
Q ss_pred HHhhcccc
Q 020701 211 STLLDAAS 218 (322)
Q Consensus 211 ~~L~~a~~ 218 (322)
|++|..++
T Consensus 104 ~ll~r~~r 111 (279)
T PRK10019 104 WMFWRTWR 111 (279)
T ss_pred HHHHHHHH
Confidence 99998764
No 25
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=83.51 E-value=2.2 Score=39.80 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=41.3
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcccc
Q 020701 152 SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 218 (322)
Q Consensus 152 ~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~ 218 (322)
+.+.+++|=.++....-..|..+.. +.+++|++| +--+-+..=++.|+|.++.+.+
T Consensus 35 ~~~~I~~GQyLGs~~lilaSL~~a~----v~~fvp~e~-------I~glLGLIPi~LGik~l~~~d~ 90 (205)
T COG4300 35 DILHIYLGQYLGSVILILASLLFAF----VLNFVPEEW-------ILGLLGLIPIYLGIKVLILGDD 90 (205)
T ss_pred cEEEEeHHHHHhHHHHHHHHHHHHH----HHhhCcHHH-------HHHHHhHHHHHHhhHHhhcccC
Confidence 3688999988887777666665553 457889998 4445566678999999988544
No 26
>COG0730 Predicted permeases [General function prediction only]
Probab=82.85 E-value=8.9 Score=35.33 Aligned_cols=155 Identities=19% Similarity=0.056 Sum_probs=76.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHHHH
Q 020701 153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAE 232 (322)
Q Consensus 153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE 232 (322)
+..|-.-...-+....++.+.+|.+ +...+|.++ .+..-+++.++.++++++.......+ +++++....
T Consensus 68 ~~~v~~~~~~~l~~~~~~G~~lG~~---l~~~~~~~~-------l~~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~ 136 (258)
T COG0730 68 RGNVDWKLALILLLGALIGAFLGAL---LALLLPAEL-------LKLLFGLLLLLLALYMLLGPRLAKAE-DRAARLRPL 136 (258)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHH---HHHhCCHHH-------HHHHHHHHHHHHHHHHHHhccccccc-ccccccCcc
Confidence 3344445555555666888888854 557788876 67667778889999999884320110 000000000
Q ss_pred Hhhh-hccCCCcchhh----hHHHHHHHHHHHHHhhcCchhHHHHHHH---------HhhcC--CceEeeHHHHHHHHHH
Q 020701 233 LAVS-EFSGNGAGIIA----AASTIISTFTLVFVAEWGDKSFFSTIAL---------AAASS--PLGVIGGALAGHVVAT 296 (322)
Q Consensus 233 ~~v~-~~~~~~~g~~~----~~~~fl~aF~liFLAE~GDKTQLaTiaL---------AAr~~--p~~V~~Ga~la~~l~t 296 (322)
.... -.-+-..|..+ .-..+...-.+..+....+|--.+|-.. ++-|- .-.+-......+.+.+
T Consensus 137 ~~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~ 216 (258)
T COG0730 137 LFALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGS 216 (258)
T ss_pred hhHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 0000 00000001000 0011222333334444443332222111 11111 1112122222788899
Q ss_pred HHHHHHHHHhhhcCCHHHHhhh
Q 020701 297 LLAVLGGSLLGTFLSEKVYSNF 318 (322)
Q Consensus 297 ~LAVl~G~~La~~lp~r~I~~~ 318 (322)
.++..+|.++.+++|++.++++
T Consensus 217 ~~G~~lG~~l~~~~~~~~lr~~ 238 (258)
T COG0730 217 ILGAYLGARLARRLSPKVLRRL 238 (258)
T ss_pred HHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999998875
No 27
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=82.10 E-value=5.9 Score=36.37 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=58.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHH
Q 020701 193 DLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFST 272 (322)
Q Consensus 193 ~~~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaT 272 (322)
+++-.++++|++++..|+.|+....+.++. .++|.+|+++. .+. .+ .|. . + =.+ -|.-|--++
T Consensus 68 sl~af~IaGGiiL~~ia~~ml~~~~~~~~~-~~~~~~~~~~~-~~~-----ai-~PL---a--~--Pll--aGPG~It~v 130 (203)
T PF01914_consen 68 SLPAFRIAGGIILFLIALEMLFGSPSSEKS-SPDEKEEAKDA-EDI-----AI-VPL---A--I--PLL--AGPGTITTV 130 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCccccc-ccchhhhhccc-ccc-----ee-ccc---c--h--hhc--cChHHHHHH
Confidence 456689999999999999999874433111 11121111110 010 00 000 0 0 001 244444455
Q ss_pred HHHHhhcCC---ceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHh
Q 020701 273 IALAAASSP---LGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYS 316 (322)
Q Consensus 273 iaLAAr~~p---~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~ 316 (322)
+.++++++. ..+.+++.+...+.+.+.-..++++.+++.+..++
T Consensus 131 i~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~ 177 (203)
T PF01914_consen 131 IVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQ 177 (203)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence 556666543 34555666666777777777788888877766444
No 28
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=81.17 E-value=2.6 Score=39.09 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=41.9
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 150 RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 150 r~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
+++++.|.+|=.++..+.-+.|++.+.. ...+|++| +--+-|.+=+++|+|-+++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~g----l~~iP~~w-------IlGlLGliPI~lGi~~l~~ 75 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFG----VNLIPEKW-------VLGLLGLIPIYLGIKVAIK 75 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHH----HHhCCHHH-------HHhHHhHHHHHHHHHHHhc
Confidence 5678999999999999888888886643 25789887 4233444458999998887
No 29
>PRK10621 hypothetical protein; Provisional
Probab=79.06 E-value=39 Score=31.55 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 156 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 156 Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
|=.-...-+.+..++.+.+|.+ +..++|++. .+.+.+++.++.+++++..
T Consensus 75 v~~~~~~~l~~~~l~Ga~~G~~---l~~~l~~~~-------l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 75 VNLADQKLNIAMTFVGSMSGAL---LVQYVQADI-------LRQILPILVIGIGLYFLLM 124 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---HHHhCCHHH-------HHHHHHHHHHHHHHHHHHC
Confidence 3344455566677888888876 457788875 7777777778888888765
No 30
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=78.77 E-value=52 Score=29.97 Aligned_cols=64 Identities=13% Similarity=0.124 Sum_probs=42.8
Q ss_pred HHHHHccCCc---chhhHHHHHHHHHHHHHHHHH-hcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701 144 SALLAARNSA---ATVFAGTFGALAAMTVISVIL-GRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 144 a~lLAar~~~---~~Vf~Gs~~AL~lmt~LSV~l-G~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a 216 (322)
.+.-++++++ ..+-+|...+..+...+++.. +..+ ..-|.-+ .+++++.++-.+++|+++++..
T Consensus 27 v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all----~~~~~~f-----~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 27 VLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALL----ATSPALF-----TVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHH-----HHHHHHHHHHHHHHHHHHHhcc
Confidence 4577888864 466677777777666655542 3332 2224333 3588999999999999999885
No 31
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=74.82 E-value=11 Score=33.59 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701 161 FGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 161 ~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a 216 (322)
..-+.+-.++.+.+|.+ +...+|+++ .+...+++.+++++++++..
T Consensus 66 ~~~~~~~~~~g~~iG~~---l~~~l~~~~-------l~~~~~~~ll~~~~~~~~~~ 111 (240)
T PF01925_consen 66 VLPLIIGALIGVVIGAW---LLSLLPDDI-------LKLIFGLFLLLLAIYMLLKK 111 (240)
T ss_pred hhhhhhHhHHHHHHHHh---hhcchhHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 34455666777888876 445788765 78888888899999998863
No 32
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=69.40 E-value=74 Score=28.35 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=42.9
Q ss_pred HHHHHccCCc---chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701 144 SALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 144 a~lLAar~~~---~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a 216 (322)
.+--++++++ ....+|...|..+...+++..-.. +-...|.-+ .++++++++-.+++|+++++..
T Consensus 27 v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~---l~~~~p~~~-----~~lk~~Ga~YL~~lg~~~~~s~ 94 (205)
T PRK10520 27 TMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGA---LFSQSLLAF-----EVLKWAGAAYLIWLGIQQWRAA 94 (205)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHH-----HHHHHHHHHHHHHHHHHHHhCC
Confidence 3566666653 456678888888776666444332 223345443 3588888888899999999874
No 33
>PRK11111 hypothetical protein; Provisional
Probab=67.95 E-value=12 Score=34.90 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=35.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 154 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 154 ~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
...+-.+..+++++. +..++|.+ +-+++- =++|-.++++|++.+.+|+.|+..
T Consensus 44 ~ia~~a~l~a~~ill-~f~~~G~~---iL~~fG-----Isl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 44 KTNLTANLSVAIILL-ISLFLGDF---ILNLFG-----ISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHH---HHHHhC-----CCHHHHHHHHHHHHHHHHHHHhCC
Confidence 344555555555555 55777775 223442 245668999999999999999954
No 34
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=66.75 E-value=12 Score=34.39 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 154 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 154 ~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
...+-.+..+++++- +..+.|.++ -+.+ +-+++-.++++|++.+..|+.|+..
T Consensus 41 ~ia~~~~l~a~~ill-~f~~~G~~i---L~~f-----gIsl~afrIaGGiiL~~ia~~ml~~ 93 (201)
T TIGR00427 41 KIAKKANISSFIILL-IFLVFGDTI---LKLF-----GISIDAFRIAGGILLFTIAMDMLSG 93 (201)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH---HHHh-----CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 344455555555554 455566542 2333 2345668999999999999999965
No 35
>PRK10958 leucine export protein LeuE; Provisional
Probab=66.70 E-value=1e+02 Score=28.00 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=41.9
Q ss_pred HHHHHccCCc---chhhHHHHHHHHHHHHHHHH-HhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701 144 SALLAARNSA---ATVFAGTFGALAAMTVISVI-LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 144 a~lLAar~~~---~~Vf~Gs~~AL~lmt~LSV~-lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
.+--+.++++ ....+|..+|..+...+++. +|.++ +..|.-+ .++++++++..+++|+++++++.
T Consensus 31 v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~----~~~p~~~-----~~l~~~G~~yL~~la~~~~~~~~ 99 (212)
T PRK10958 31 VLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLL----KATPLLF-----NVVKYLGAAYLLYLGVKMLRAAL 99 (212)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHH-----HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466666663 45566777777766655553 33332 2334332 45888888888999999998864
No 36
>COG4280 Predicted membrane protein [Function unknown]
Probab=64.72 E-value=7.6 Score=36.96 Aligned_cols=67 Identities=19% Similarity=0.125 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHhh--cCCceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHhhhcC
Q 020701 249 ASTIISTFTLVFVAEWGDKSFFSTIALAAA--SSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL 320 (322)
Q Consensus 249 ~~~fl~aF~liFLAE~GDKTQLaTiaLAAr--~~p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~~~aG 320 (322)
+++|+.+|...++ | -+-..+++.+-. +++..-++|+.+|.++.-.++...|+.+ ..+|..++++++|
T Consensus 3 wsi~lAAl~sSlv-E---lvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~g 71 (236)
T COG4280 3 WSIFLAALGSSLV-E---LVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSG 71 (236)
T ss_pred HHHHHHHHHHHHH-H---HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHH
Confidence 3455555543322 2 344556666665 5788899999999999999999999998 5789999998876
No 37
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=63.11 E-value=25 Score=36.46 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCC----c------hhHHHHHHHHHHHHHHHH
Q 020701 158 AGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTD----L------PIDDIAAVCLLVYFGVST 212 (322)
Q Consensus 158 ~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~----~------~i~~~~A~~LFl~FGl~~ 212 (322)
+|+..+|.++..+..++=..+||.-. +++....+ + .++-.++=+.|++|=+|+
T Consensus 194 A~v~s~lLl~a~l~~l~P~~l~~~~~--~~~~~~~~~~~~l~lSr~~SivmliaYi~~L~FqL~t 256 (441)
T KOG1397|consen 194 AGVNSALLLLAVLGILLPTVLHYTYG--GEVHDCSSGGAILPLSRGCSIVMLIAYIAYLWFQLKT 256 (441)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcC--ccccccCCccceeeehhccHHHHHHHHHHHHHHhhhc
Confidence 44555666677777666666665322 12221111 1 233445555566676666
No 38
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=58.13 E-value=23 Score=32.11 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=46.2
Q ss_pred HHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 146 LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 146 lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
+.+.-.+++.++.|.+.|...|-..+-.+.++. +..| ..+++++.+..+.|++|+.|
T Consensus 127 ~~~it~~~~iv~~g~i~si~~m~~~~~~~~~~l----~~~p---------~l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 127 AVGITDDFFIVITGNIISILLMRFLSFLLAKLL----ERFP---------YLKYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHHHHHHHhhC
Confidence 344447799999999999999999999999863 3344 47889999999999998864
No 39
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=55.24 E-value=32 Score=32.34 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=48.8
Q ss_pred HHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701 146 LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 146 lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
+.|...+++.++.|.+.+...|-..+-.+.++. +..| ..++++.....+.|++|+.++.
T Consensus 117 ~~git~~~~ii~~g~~~sIl~lr~~s~~l~~li----~r~p---------~L~~~~~~iL~~ig~kLil~~~ 175 (215)
T TIGR03716 117 AVALSGQFWVVFLGGIIGILIMRFAATIFVKLL----ERFP---------ELETAAFLLIGWIGVKLLLETL 175 (215)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 556667899999999999999999999988753 3334 4788999999999999999863
No 40
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=53.46 E-value=1.3e+02 Score=30.61 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=24.6
Q ss_pred HHHHHHhhcC----CceEeeHHHHHHHHHHHHHHHHHHHh
Q 020701 271 STIALAAASS----PLGVIGGALAGHVVATLLAVLGGSLL 306 (322)
Q Consensus 271 aTiaLAAr~~----p~~V~~Ga~la~~l~t~LAVl~G~~L 306 (322)
.+..-||+.| ...+.+|+.++.+.-+.+++++=.|+
T Consensus 273 ~tAV~aA~kNkmq~slnialGSsLq~illtvP~lvlig~~ 312 (366)
T PRK10599 273 LGALKAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAFL 312 (366)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444533 36789999999999999887665544
No 41
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=53.41 E-value=41 Score=32.36 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=48.2
Q ss_pred HHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701 146 LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 146 lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
+.|+-.+++.|++|.+.|...|-..+=.+.+++ +..| .+.+++.+..++.|++|+.++.
T Consensus 155 a~g~~~~~~im~~a~i~aI~~m~~aa~~l~~ll----~r~p---------~l~~~~~~iL~~IG~kli~~~~ 213 (254)
T COG0861 155 AVGMAGHPFVMVTAVIFAILVMRFAAFLLARLL----ERHP---------TLKYLALVILLFIGVKLILEGL 213 (254)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH----HHch---------HHHHHHHHHHHHHHHHHHHhhh
Confidence 444447799999999999999999999999864 3334 3778999889999999999953
No 42
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=52.06 E-value=81 Score=33.68 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 020701 196 IDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIAL 275 (322)
Q Consensus 196 i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaTiaL 275 (322)
+.+.+.++..+.||+.++.+|.+.-. .|. -+....+.. ..|+..++..+++.-+----+-|-++|+.+
T Consensus 7 ~l~l~g~v~l~L~g~~~m~~Gv~~~~----G~~--lr~~L~~~t------~np~~gvl~Gi~~T~llQSStatt~lt~gf 74 (533)
T COG1283 7 LLNLLGAVALLLFGIKMVGDGVQRAA----GDR--LRKILARFT------SNPILGVLAGIVATALLQSSTATTVLTIGF 74 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----HHH--HHHHHHHhc------CCcHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 47888999999999999999865322 111 111122222 135677888888888888889999999999
Q ss_pred Hhhc-----CCceEeeHHHHHHHHHHHHHHHH
Q 020701 276 AAAS-----SPLGVIGGALAGHVVATLLAVLG 302 (322)
Q Consensus 276 AAr~-----~p~~V~~Ga~la~~l~t~LAVl~ 302 (322)
.++. ...+|++|+-+|..+.+-+..+-
T Consensus 75 V~aGl~sl~~Ai~vilGANIGTt~Ta~iva~~ 106 (533)
T COG1283 75 VAAGLLSLKQAIGVILGANIGTTVTAWIVALD 106 (533)
T ss_pred HhccccchhhhhhheeccchhHHHHHHHHHHh
Confidence 8882 35789999999988877655443
No 43
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=51.31 E-value=40 Score=31.41 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcccc
Q 020701 154 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 218 (322)
Q Consensus 154 ~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~ 218 (322)
..++-.+..|+.++-+. .++|+. +-+++ +-+.+-.+++++++.+..|+.|+.+..+
T Consensus 41 ~v~~ra~i~a~~ill~f-~~~G~~---il~~f-----gIsi~a~rIAGGilLf~ia~~ml~~~~~ 96 (203)
T COG2095 41 RVALRASIIALLILLVF-LLLGEG---ILRFF-----GISIDAFRIAGGILLFLIALRMLFGPTS 96 (203)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH---HHHHh-----CCchhHHHHhhhHHHHHHHHHHhcCCcC
Confidence 44555555565555443 445543 22222 2234458899999999999999988544
No 44
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=51.03 E-value=24 Score=31.30 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCchhHHHHH
Q 020701 199 IAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEA 231 (322)
Q Consensus 199 ~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~ea 231 (322)
.+++.|-+..|.++..-+.+.+..+||+|+.|.
T Consensus 42 ~ls~~l~~mig~yl~~~~rr~~~rPED~~daEI 74 (137)
T PF12270_consen 42 VLSGGLALMIGFYLRFTARRIGPRPEDREDAEI 74 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcccccccc
Confidence 455556667777777777776666566555443
No 45
>PRK10229 threonine efflux system; Provisional
Probab=46.87 E-value=61 Score=28.86 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=44.7
Q ss_pred cCchHHHHHHHHHHccCCc---chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHH
Q 020701 135 LGDISRGFASALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 211 (322)
Q Consensus 135 LGDKkTf~aa~lLAar~~~---~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~ 211 (322)
-|- +.+..+--+.++++ ....+|...|..+..++++..-.. +-...|.-. .++++++++..+++|..
T Consensus 19 PGP--~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~---ll~~~p~~~-----~~l~~~Ga~yLlylg~~ 88 (206)
T PRK10229 19 PGP--DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHL---ILEKMAWLH-----TIIMVGGGLYLCWMGYQ 88 (206)
T ss_pred CCc--hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHH-----HHHHHHHHHHHHHHHHH
Confidence 355 44445667777763 345567777777665554443322 223334332 35788888888999999
Q ss_pred Hhhccc
Q 020701 212 TLLDAA 217 (322)
Q Consensus 212 ~L~~a~ 217 (322)
++++..
T Consensus 89 ~~~~~~ 94 (206)
T PRK10229 89 MLRGAL 94 (206)
T ss_pred HHHhcc
Confidence 998753
No 46
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=46.74 E-value=2.6e+02 Score=28.65 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCHH
Q 020701 290 AGHVVATLLAVLGGSLLGTFLSEK 313 (322)
Q Consensus 290 la~~l~t~LAVl~G~~La~~lp~r 313 (322)
-..++.-+++..+|.++..|+.+|
T Consensus 250 s~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 250 SLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Confidence 334444555555555555555444
No 47
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=45.56 E-value=66 Score=29.09 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=44.3
Q ss_pred HccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 148 AARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 148 Aar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
+++.+.+.+++|.+.+..+|-..|-.+.++. +..| ..++++.....+.|++|+.+
T Consensus 121 ~~~~~~~li~~g~~i~i~~m~~~s~~~~~~~----~~~p---------~l~~~~~~~L~~ig~kl~~~ 175 (176)
T TIGR03717 121 AAHGHLGLLIFGLLLSIPIIVWGSTLILKLM----DRFP---------WIIYIGAALLGYVAGEMIVT 175 (176)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHHHHHHHhcC
Confidence 3455789999999999999999998888753 3333 47889998899999999875
No 48
>PRK10739 putative antibiotic transporter; Provisional
Probab=41.25 E-value=75 Score=29.33 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 154 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 154 ~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
+..+-.+..+++++- +..++|.. +-+.+ +-++|-.+++++++.+.+|+.|+.+
T Consensus 38 ~ia~~a~~~a~~ill-~f~~~G~~---iL~~f-----GIsl~afrIAGGilL~~ial~ml~~ 90 (197)
T PRK10739 38 AIMIRELLIALLVML-VFLFAGEK---ILAFL-----NLRTETVSISGGIILFLIAIKMIFP 90 (197)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHH---HHHHh-----CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455555555544 55566654 22333 2345668999999999999999966
No 49
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=40.92 E-value=3.3e+02 Score=26.01 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=33.7
Q ss_pred CchhHHH---------HHHHHhhcCCceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHhhhc
Q 020701 265 GDKSFFS---------TIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFN 319 (322)
Q Consensus 265 GDKTQLa---------TiaLAAr~~p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~~~a 319 (322)
||-|.|. ++.+|+.+. ++|..-+.--.+.-..+. +.+.+++.++++..+.-++
T Consensus 126 gd~siL~~KsiLDg~taiifaaslG-~gV~~saipv~iyQg~l~-llA~~l~~~ls~~~i~~~s 187 (226)
T PF04474_consen 126 GDPSILLTKSILDGFTAIIFAASLG-IGVAFSAIPVFIYQGSLT-LLAGFLAPLLSPAMINEIS 187 (226)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHH
Confidence 8988764 577888876 344444444444444444 5667777888888776443
No 50
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=40.65 E-value=73 Score=31.41 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 020701 196 IDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIAL 275 (322)
Q Consensus 196 i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaTiaL 275 (322)
+.+.+.+..++++|+.++.++.++-.+.+ ...+- .....+ +++..++..+++..+.-----+-..+++|
T Consensus 129 ~G~~l~G~gllf~gl~~m~~~~~pl~~~~--~~~~~---~~~l~~------~~~~~~l~G~~lT~ivQSSsA~i~i~~~l 197 (307)
T TIGR00704 129 LGRSGIGLGLIFLALELISQLVTPLTQAN--GVQVI---FASLTG------SILLDLLIGAVLTIISHSSSAAVLITATL 197 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCh--hHHHH---HHHhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788889999999988765332211 11110 111111 23344445555555443333333444455
Q ss_pred Hhhc-----CCceEeeHHHHHHHHHHHHHHHHHHHhhhc
Q 020701 276 AAAS-----SPLGVIGGALAGHVVATLLAVLGGSLLGTF 309 (322)
Q Consensus 276 AAr~-----~p~~V~~Ga~la~~l~t~LAVl~G~~La~~ 309 (322)
++.. ...++.+|+-+|..+...++...+..-++|
T Consensus 198 a~~G~i~~~~a~~lvlGaNiGT~~ta~las~g~~~~arr 236 (307)
T TIGR00704 198 TAAGIIGFPVALCLVLGSNLGSGILAMLAASAANAAARR 236 (307)
T ss_pred HHCCCCCHHHHHHHHHhcchhHHHHHHHHHccCchhHHH
Confidence 5542 235566677666666666666555444443
No 51
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=40.64 E-value=3.9e+02 Score=26.80 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=44.0
Q ss_pred hccCchHHHHHHHHHHccCC-cchhhHHHHHHHHH----HHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHH
Q 020701 133 GDLGDISRGFASALLAARNS-AATVFAGTFGALAA----MTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVY 207 (322)
Q Consensus 133 AELGDKkTf~aa~lLAar~~-~~~Vf~Gs~~AL~l----mt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~ 207 (322)
.|=|--|+.+++-+.+.+-+ +..++++..+++.= ...+..+.|.+ . .+..+-+.+-|..+.++.++.+.
T Consensus 70 lgPGHgKaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~-----~-~~s~~~~~s~~~lE~~S~~Ll~~ 143 (303)
T COG2215 70 LGPGHGKAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVL-----R-LSSITFALSEPWLELISFLLLIL 143 (303)
T ss_pred cCCCcchHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----H-hhhhHHhhhhHHHHHHHHHHHHH
Confidence 45666666665544444444 55666665554431 11111111211 1 11111123445689999999999
Q ss_pred HHHHHhhcccc
Q 020701 208 FGVSTLLDAAS 218 (322)
Q Consensus 208 FGl~~L~~a~~ 218 (322)
+|+|++|..++
T Consensus 144 ~G~w~~~r~lr 154 (303)
T COG2215 144 LGLWLLWRTLR 154 (303)
T ss_pred HHHHHHHHHHH
Confidence 99999998855
No 52
>COG1971 Predicted membrane protein [Function unknown]
Probab=39.65 E-value=48 Score=30.97 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701 164 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 164 L~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
...++.++..+|+- +..+++.+ ..++.++.++.+|++.|++.+
T Consensus 146 T~il~~~G~~IG~~---~g~~~g~~--------ae~lgGiiLI~~G~~iL~~~~ 188 (190)
T COG1971 146 TLILSALGAIIGRK---LGKFLGKY--------AEILGGIILIGIGVKILLEHL 188 (190)
T ss_pred HHHHHHHHHHHHHH---HHHHHhhH--------HHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777753 56777755 689999999999999999854
No 53
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=38.86 E-value=2.1e+02 Score=24.98 Aligned_cols=53 Identities=19% Similarity=0.128 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCcchhhhhHHHHhhhhhHHhhccCchHHHHHHHHHHccCC--cchhh
Q 020701 101 FVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASALLAARNS--AATVF 157 (322)
Q Consensus 101 ~~l~fg~~tl~~~~~~~~~s~F~~~~~~iifLAELGDKkTf~aa~lLAar~~--~~~Vf 157 (322)
..+..-+|.+-.+....+ -.|+.....+..++|.-|- ++...-+.||+ ++.++
T Consensus 12 ~~~g~l~~~~~~g~~~~~-~~~l~~~~~l~~l~~~~d~---~~~~~~ak~~G~s~~~~~ 66 (140)
T PF04306_consen 12 IWLGILLYAFFTGFSEFG-WWFLAILAVLALLGEVLDY---LAGAYGAKRFGASRWGIW 66 (140)
T ss_pred HHHHHHHHHHHcCCCccc-HHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCHHHHH
Confidence 334444555555544344 4445455555678999994 66767777776 44444
No 54
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=38.41 E-value=1.2e+02 Score=29.93 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 020701 196 IDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIAL 275 (322)
Q Consensus 196 i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaTiaL 275 (322)
+.+.++++.++++|+.++.++.+.-.. +. -+.-..+..+ +++..++..+++..+---.--+-.+++.|
T Consensus 4 ~~~llgGlgl~l~Gl~~~~~~l~~~~g---~~---~~~~l~~~t~------~~~~a~l~G~~~Tal~QSSsa~t~i~i~l 71 (307)
T TIGR00704 4 LLHLLSAVAFLLWGMHIVRTGVMRVFG---AR---LRTVLSRSTE------KKPLAFLAGIGVTAIVQSSNATTVLVISF 71 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hH---HHHHHHHHcC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999998653211 11 1111122211 23455555565556655555566667777
Q ss_pred Hhhc-----CCceEeeHHHHHHHHHHHHHHH
Q 020701 276 AAAS-----SPLGVIGGALAGHVVATLLAVL 301 (322)
Q Consensus 276 AAr~-----~p~~V~~Ga~la~~l~t~LAVl 301 (322)
+... ...+|.+|+-+|..+...++.+
T Consensus 72 v~~G~l~~~~al~iilGANiGTt~t~~l~s~ 102 (307)
T TIGR00704 72 VAAGVLSLAPAIVIILGANVGTTLTARILAF 102 (307)
T ss_pred HHCCCCCHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 7663 2366778887777766666544
No 55
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=36.57 E-value=80 Score=23.54 Aligned_cols=35 Identities=17% Similarity=0.499 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHH
Q 020701 164 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 209 (322)
Q Consensus 164 L~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FG 209 (322)
-.+|+.++..+|+. +.+.++ ++ .+++++++++++|
T Consensus 33 ~~~~~~~G~~~G~~---~~~~~~-~~-------~~~igg~iLi~iG 67 (67)
T PF02659_consen 33 QFIMPLLGLLLGRR---LGRFIG-SY-------AEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHH---HHHHHH-HH-------HHHHHHHHHHHHC
Confidence 46788888999986 445554 43 7889988887765
No 56
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=35.93 E-value=5.6e+02 Score=27.18 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhc-CchhHHHHHHHHhhcCCceEeeHHHH
Q 020701 250 STIISTFTLVFVAEW-GDKSFFSTIALAAASSPLGVIGGALA 290 (322)
Q Consensus 250 ~~fl~aF~liFLAE~-GDKTQLaTiaLAAr~~p~~V~~Ga~l 290 (322)
--+...++..|.++- ++-.|..++.+-.-.+-..|+-++..
T Consensus 266 vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~ 307 (488)
T KOG2325|consen 266 VCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGIT 307 (488)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhH
Confidence 345677777787777 89899998887766443444444433
No 57
>PRK11469 hypothetical protein; Provisional
Probab=35.36 E-value=53 Score=29.96 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701 158 AGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 158 ~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
+-+.+.-++++...+.+|+. +++.+. ++ .+++.+++++..|+++|.+..
T Consensus 138 ~~ig~~s~~~~~~G~~lG~~---~g~~~g-~~-------a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 138 LAIGCATLIMSTLGMMVGRF---IGSIIG-KK-------AEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHc
Confidence 33334445666667777764 334443 23 678999999999999998753
No 58
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=33.98 E-value=86 Score=31.11 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=46.5
Q ss_pred HHHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701 145 ALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 145 ~lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a 216 (322)
++.|...+++.|+.|.+.|...+-.+.-++.++. +..| ..++.+++...+.|++|+.++
T Consensus 212 Ai~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll----~rf~---------~L~~~~a~iL~fIGvkmll~~ 270 (302)
T TIGR03718 212 AIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLL----ERFH---------YLKYGLAVILVFIGVKMLLHA 270 (302)
T ss_pred HHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHH----HHhH---------HHHHHHHHHHHHHHHHHHHhh
Confidence 4778888899999999988887777666666642 3333 478999999999999999974
No 59
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=30.41 E-value=1.1e+02 Score=28.14 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=41.4
Q ss_pred HHHHHccCCcc---hhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcccc
Q 020701 144 SALLAARNSAA---TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 218 (322)
Q Consensus 144 a~lLAar~~~~---~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~ 218 (322)
.++++.+++.+ .+.++++....+.+.+.-..+. .+-++.|++-..++..+.+.+....|+.++.+|.+
T Consensus 130 vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~-------~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~Gl~ 200 (203)
T PF01914_consen 130 VIVLSAEAGSLQSLLIVLIAILLVALITYLILRFAD-------KIMRRLGKTGLQVITRIMGLILAAIAVQMILSGLR 200 (203)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777753 3333333333333444443443 33444455667788889999999999999988653
No 60
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=30.22 E-value=2.9e+02 Score=23.66 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 020701 197 DDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 197 ~~~~A~~LFl~FGl~~L~~ 215 (322)
.-+..+++++.+|.|.++.
T Consensus 53 ~fi~~tl~~lg~a~~~~yr 71 (116)
T PF02411_consen 53 YFIALTLLFLGYAFWRLYR 71 (116)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3456666788999998875
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=28.77 E-value=1.7e+02 Score=29.44 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhcccCCcccC--CCCchhHHHHHHHHHHHHHHHHhhccccCC
Q 020701 158 AGTFGALAAMTVISVILGRTFHYVDEILPFRFG--QTDLPIDDIAAVCLLVYFGVSTLLDAASTD 220 (322)
Q Consensus 158 ~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~--~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~ 220 (322)
+|...++-+.+++..++|..+ +.++-.+|+ -++....-.+.+++.++.|+.+.--|..++
T Consensus 97 iGvS~~~pIs~Gl~lv~gtL~---~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 97 LGMSLGIGIAIGITLIVGTLM---PPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred hhhhhhhhHHHHHHHHHHHHH---HHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 566666666666655555432 212211110 011112335666677888988776655433
No 62
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=28.26 E-value=1.1e+02 Score=26.65 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcc
Q 020701 196 IDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 196 i~~~~A~~LFl~FGl~~L~~a 216 (322)
++..+.+++|+++|+++++++
T Consensus 171 ~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 171 WINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 478899999999999999874
No 63
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=25.42 E-value=5.1e+02 Score=23.40 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=36.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701 154 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 154 ~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a 216 (322)
+.-++|.+.+.++..++.....+. +.+..+.. .++...+++++.+++++.+|++..+..
T Consensus 32 ~af~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 32 LAFLAGWFLGYLAVGLVLLFGLDA---LPSGSSSA-PSPVVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hccccccC-CccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344456666666655555555543 33222111 244566788999999999999998774
No 64
>PRK11111 hypothetical protein; Provisional
Probab=25.40 E-value=1.1e+02 Score=28.61 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701 144 SALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 144 a~lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
.++++.+++.+.-.++..++.+++.++..+.=+ .++.+-+..|++-..++..+.+.+...+|+-++.++.
T Consensus 136 vI~l~~~~~~~~~~~~~~~ai~~~~~~~~l~l~----~s~~i~r~LG~~G~~vi~RimGliL~aiaVq~i~~Gi 205 (214)
T PRK11111 136 TIVWGTRYHSWSNLLGFSVAIALFALCCWLLFR----MAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGI 205 (214)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666665444444444444444333332211 1233444445666777888999999999999998864
No 65
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=25.34 E-value=4e+02 Score=23.54 Aligned_cols=46 Identities=22% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcchhhhcccC--CcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701 163 ALAAMTVISVILGRTFHYVDEIL--PFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 163 AL~lmt~LSV~lG~~~~~i~~~L--P~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
-|.+++.+.+++|.++ +..+ |.+.| .--+|-+|.++...|+-+.++
T Consensus 8 lLa~C~L~G~~lGdlL---G~llGV~aNVG------GVGiAMlLLi~~~~~l~k~G~ 55 (125)
T TIGR00807 8 LLAVCHLLGVYLGNIL---GMALGVKANVG------GVGIAMILLIISKELLAKRGH 55 (125)
T ss_pred HHHHHHHHHHHHHHHH---HHHhCCCcccc------hHHHHHHHHHHHHHHHHHcCC
Confidence 4667888888888763 3444 55553 223344444555555555543
No 66
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.00 E-value=1.8e+02 Score=24.52 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhcchhhhcccCCcc
Q 020701 163 ALAAMTVISVILGRTFHYVDEILPFR 188 (322)
Q Consensus 163 AL~lmt~LSV~lG~~~~~i~~~LP~~ 188 (322)
.+++-+++.+++|+| +++..|..
T Consensus 51 ~~v~pil~G~~lG~W---LD~~~~t~ 73 (100)
T TIGR02230 51 SVAIPTLLGVAVGIW---LDRHYPSP 73 (100)
T ss_pred HHHHHHHHHHHHHHH---HHhhcCCC
Confidence 456667788888887 67777754
No 67
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=23.48 E-value=5.2e+02 Score=22.87 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=14.9
Q ss_pred HHHHHhhcCCceEeeHHHHHHH
Q 020701 272 TIALAAASSPLGVIGGALAGHV 293 (322)
Q Consensus 272 TiaLAAr~~p~~V~~Ga~la~~ 293 (322)
.+++||++|...-+-|...|.+
T Consensus 75 VVAMAA~QNVv~Al~gG~~All 96 (125)
T PF03817_consen 75 VVAMAAQQNVVAALSGGPVALL 96 (125)
T ss_pred HHHHhhhhhhHHhhcCCcchHH
Confidence 4678888887666666665544
No 68
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=23.34 E-value=3.2e+02 Score=26.48 Aligned_cols=53 Identities=25% Similarity=0.222 Sum_probs=28.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701 153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a 216 (322)
...+..|+.++.++..+++.++-+.. ..+|.+. .-...+++.++.+.-++..+
T Consensus 165 ~~~~~~g~~~G~~~a~~~~~~~~~~~----~~i~~~~-------~f~~~~~~ll~~aa~L~~~~ 217 (306)
T PF03239_consen 165 AASILLGAILGIAAAVVLGWLLYRGL----IRISLRS-------FFIITGVLLLLIAAGLLGVG 217 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HhcChHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777666776665532 3355543 33444444444444444443
No 69
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=22.52 E-value=1.9e+02 Score=27.02 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHHHHHHHccCC--cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701 140 RGFASALLAARNS--AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 217 (322)
Q Consensus 140 Tf~aa~lLAar~~--~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~ 217 (322)
+.-+.+.++.+++ .+.+.++..++ .+.+.+.-.... .+-+..|+|.+.++..+.+++...+|+-++.+|.
T Consensus 125 ~Ist~i~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~s~-------~i~r~lG~~G~~~~~RimGllL~al~vq~i~~Gl 196 (203)
T COG2095 125 TIATVIVLSSQYGNSKLAVVLAILLA-SLLTYLILLSSS-------RIMRLLGKTGLNALTRIMGLLLAALGVQMILDGL 196 (203)
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHH-HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567888877 34444444443 334443333332 2233345566777888899999999999998865
Q ss_pred c
Q 020701 218 S 218 (322)
Q Consensus 218 ~ 218 (322)
+
T Consensus 197 ~ 197 (203)
T COG2095 197 R 197 (203)
T ss_pred H
Confidence 4
No 70
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=21.50 E-value=2e+02 Score=26.42 Aligned_cols=44 Identities=25% Similarity=0.166 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 160 TFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 160 s~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
++.++.+.+++++....+ ..+.+|. .+++..++-++||..+++-
T Consensus 25 AT~~~~vat~~~~~~~~~---~~~~v~~---------m~~is~~lv~vFGglTl~~ 68 (178)
T TIGR00997 25 ATIALLVATIIAIGLSYV---KYKKVEK---------MQWISFVLIVVFGGLTLIF 68 (178)
T ss_pred HHHHHHHHHHHHHHHHHH---HhCCccH---------HHHHHHHHHHHHHHHHHHh
Confidence 445667778888888775 3345543 6788888889999998887
No 71
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=21.16 E-value=5.9e+02 Score=22.66 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=43.3
Q ss_pred HHHHHccCCc---chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701 144 SALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 216 (322)
Q Consensus 144 a~lLAar~~~---~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a 216 (322)
.+.-++++++ +...+|...|..+...+++..... +-+..|.-+ .++++++++-.++.|.++++.+
T Consensus 27 v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~---l~~~~p~~~-----~vlk~~Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 27 ALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFS---LAVIDPAAV-----HLLSWAGAAYIVWLAWKIATSP 94 (195)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcc
Confidence 3566777763 567889999998876666533322 223335433 3578888887889999999863
No 72
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.72 E-value=6.8e+02 Score=23.19 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=40.3
Q ss_pred HHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 146 LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 146 lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
+.....+++..++ ......+++-+++++|.++ ..............+..-+++..|+|.++.-+..
T Consensus 222 l~~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~---~~~~~~~~~~~~~~~~~a~aaG~~lyv~~~ell~ 287 (317)
T PF02535_consen 222 LVKAGFSKRKALL-LLLLFSLSTPIGALIGIAI---SNSGSSSSSDIVSGILLAFAAGTFLYVAFVELLP 287 (317)
T ss_pred hhhhccccchhhH-HHHHHHHHHHHHHHHHHHh---cccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666 8888899999999999864 0111111111112345666667788888875554
No 73
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.34 E-value=3e+02 Score=25.53 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcchhhhcccCCc-ccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701 155 TVFAGTFGALAAMTVISVILGRTFHYVDEILPF-RFGQTDLPIDDIAAVCLLVYFGVSTLLD 215 (322)
Q Consensus 155 ~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~-~~~~~~~~i~~~~A~~LFl~FGl~~L~~ 215 (322)
.+++++++++++.+++++++-..+ ...+. +..++-+.+..-+++..|+.-+++-|.+
T Consensus 2 ~~ki~~~~~i~~~s~lg~~~P~~~----~~~~~~~~~~~~l~~~~~fa~GvlL~~a~~hLLP 59 (317)
T PF02535_consen 2 GLKIVAILAIFIVSLLGGLLPLLI----RKFSKNRLNKRILSLLNAFAAGVLLGTAFLHLLP 59 (317)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHH----HHhhccccchHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 356677777777777777666543 22222 2223334556666777788888876665
No 74
>COG1279 Lysine efflux permease [General function prediction only]
Probab=20.20 E-value=7.5e+02 Score=23.46 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccC
Q 020701 195 PIDDIAAVCLLVYFGVSTLLDAAST 219 (322)
Q Consensus 195 ~i~~~~A~~LFl~FGl~~L~~a~~~ 219 (322)
+++.+..++..+++|...+++++++
T Consensus 70 ~i~~~~G~~FLl~yg~~a~~~a~~~ 94 (202)
T COG1279 70 LIVRWGGAAFLLYYGLLALKSAPRG 94 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4677888888899999999998875
No 75
>COG1238 Predicted membrane protein [Function unknown]
Probab=20.11 E-value=1.6e+02 Score=26.56 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHhhcCCceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHH
Q 020701 249 ASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEK 313 (322)
Q Consensus 249 ~~~fl~aF~liFLAE~GDKTQLaTiaLAAr~~p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r 313 (322)
+..|+.+|+--.+-=+..--.++.+.++- ++++.+.+=+++|..+.+...-++|+++.+.+..+
T Consensus 20 ~~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~ 83 (161)
T COG1238 20 AGLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFLPEFIARR 83 (161)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH
Confidence 46677777777777777778888888887 89988888888888888887777777776665554
Done!