Query 020701
Match_columns 322
No_of_seqs 198 out of 1204
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 22.4 80 0.0027 20.5 3.0 16 199-214 12-27 (32)
2 2i68_A Protein EMRE; transmemb 21.2 1.7E+02 0.0058 24.1 5.7 16 200-215 88-103 (137)
3 3v5u_A Uncharacterized membran 14.6 7.1E+02 0.024 23.0 10.1 49 118-170 35-83 (320)
4 3o7q_A L-fucose-proton symport 14.2 6.2E+02 0.021 22.1 12.4 23 294-316 306-328 (438)
5 1p7a_A BF3, BKLF, kruppel-like 12.4 1.3E+02 0.0043 17.2 2.1 21 9-29 1-21 (37)
6 2epx_A Zinc finger protein 28 9.9 1.8E+02 0.006 17.5 2.2 20 8-27 1-20 (47)
7 2zy9_A Mg2+ transporter MGTE; 7.5 9E+02 0.031 23.2 7.2 56 155-213 408-468 (473)
8 2eoh_A Zinc finger protein 28 7.0 3E+02 0.01 16.5 2.4 19 9-27 2-20 (46)
9 1q90_G Cytochrome B6F complex 6.9 4.9E+02 0.017 17.6 3.4 25 285-309 6-30 (37)
10 2ytr_A Zinc finger protein 347 6.9 3.3E+02 0.011 16.2 2.6 19 9-27 2-20 (46)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=22.41 E-value=80 Score=20.46 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 020701 199 IAAVCLLVYFGVSTLL 214 (322)
Q Consensus 199 ~~A~~LFl~FGl~~L~ 214 (322)
.++..-|+.||.|+..
T Consensus 12 lvalltflafgfwlfk 27 (32)
T 2lx0_A 12 LVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455569999999864
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=21.17 E-value=1.7e+02 Score=24.14 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhc
Q 020701 200 AAVCLLVYFGVSTLLD 215 (322)
Q Consensus 200 ~A~~LFl~FGl~~L~~ 215 (322)
+.++.+++.|+..+..
T Consensus 88 ~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 88 IIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5556679999998864
No 3
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=14.62 E-value=7.1e+02 Score=23.05 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=26.9
Q ss_pred hhhHHHHhhhhhHHhhccCchHHHHHHHHHHccCCcchhhHHHHHHHHHHHHH
Q 020701 118 AAVDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVI 170 (322)
Q Consensus 118 ~~s~F~~~~~~iifLAELGDKkTf~aa~lLAar~~~~~Vf~Gs~~AL~lmt~L 170 (322)
..++...++..+.+-..+.|- ++.+.|++.+...+-+|.+.+--+.+.+
T Consensus 35 gis~~viGltiva~GTSlPEl----~vsi~A~~~g~~diaiGnivGSni~nil 83 (320)
T 3v5u_A 35 NVSNFVIGATVMAIGTSLPEI----LTSAYASYMHAPGISIGNAIGSCICNIG 83 (320)
T ss_dssp TBCHHHHHHTHHHHHHHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcccHHH----HHHHHHHhCCCCceeeeeecchHHHHHH
Confidence 335666666665555667773 3345566656555555655554444433
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=14.19 E-value=6.2e+02 Score=22.12 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHh
Q 020701 294 VATLLAVLGGSLLGTFLSEKVYS 316 (322)
Q Consensus 294 l~t~LAVl~G~~La~~lp~r~I~ 316 (322)
++..++.+++.++.+|+..|.+-
T Consensus 306 ~~~~~~~~~~g~l~~r~~~~~~~ 328 (438)
T 3o7q_A 306 VCFFIGRFTGTWLISRFAPHKVL 328 (438)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHH
Confidence 44455566666667777776543
No 5
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=12.43 E-value=1.3e+02 Score=17.21 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=14.7
Q ss_pred cccccccCCCCCCCCCCCCCC
Q 020701 9 SGLKAHSLPSSASYPKASKSC 29 (322)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (322)
++.+.|+-..|+.||.-.|.+
T Consensus 1 ~H~~~h~~~k~~~C~~C~k~f 21 (37)
T 1p7a_A 1 GSTRGSTGIKPFQCPDCDRSF 21 (37)
T ss_dssp CCSSTTCCSSSBCCTTTCCCB
T ss_pred CCCCcCCCCCCccCCCCCccc
Confidence 356778888888888765533
No 6
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=9.86 E-value=1.8e+02 Score=17.55 Aligned_cols=20 Identities=10% Similarity=-0.144 Sum_probs=15.3
Q ss_pred ccccccccCCCCCCCCCCCC
Q 020701 8 WSGLKAHSLPSSASYPKASK 27 (322)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (322)
+++.+.|+-..|+.|+.=.|
T Consensus 1 ~~H~~~H~~~k~~~C~~C~k 20 (47)
T 2epx_A 1 GSSGSSGTGKKPYECIECGK 20 (47)
T ss_dssp CCCCCCCCCCCSBCCSSSCC
T ss_pred CccccccCCCCCEECCccCc
Confidence 56788898888888876544
No 7
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=7.55 E-value=9e+02 Score=23.18 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcchhhhcccC---CcccCCCCchhHHHHH--HHHHHHHHHHHh
Q 020701 155 TVFAGTFGALAAMTVISVILGRTFHYVDEIL---PFRFGQTDLPIDDIAA--VCLLVYFGVSTL 213 (322)
Q Consensus 155 ~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~L---P~~~~~~~~~i~~~~A--~~LFl~FGl~~L 213 (322)
.+-+-+.+|++++..+|.++|..++++...+ |... +-|++.-+. ..+|+|||+-.+
T Consensus 408 ~~~~~v~~a~~~~~~~a~~~g~~~p~~~~~~~~DPa~~---s~p~itt~~D~~g~~~~~~~a~~ 468 (473)
T 2zy9_A 408 LLLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALV---SNPLVATLSDVTGLLIYLSVARL 468 (473)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTCCGGGS---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc---ccchHHHHHHHHHHHHHHHHHHH
Confidence 3444455667777788888888765554444 3322 334333222 124667776544
No 8
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=7.03 E-value=3e+02 Score=16.52 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=14.3
Q ss_pred cccccccCCCCCCCCCCCC
Q 020701 9 SGLKAHSLPSSASYPKASK 27 (322)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (322)
++.+.|+-..|+.|+.=.|
T Consensus 2 ~H~~~H~~~k~~~C~~C~k 20 (46)
T 2eoh_A 2 SSGSSGSGKKPYECKECRK 20 (46)
T ss_dssp CCCCSCCCSCSCCCSSSCC
T ss_pred CCCCCcCCCCCcCCCCcCc
Confidence 5778888888888876444
No 9
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=6.94 E-value=4.9e+02 Score=17.61 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.8
Q ss_pred eeHHHHHHHHHHHHHHHHHHHhhhc
Q 020701 285 IGGALAGHVVATLLAVLGGSLLGTF 309 (322)
Q Consensus 285 ~~Ga~la~~l~t~LAVl~G~~La~~ 309 (322)
..|.++|++-+|+.+..+-+++..+
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 4689999999999988888887654
No 10
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=6.91 E-value=3.3e+02 Score=16.15 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=14.6
Q ss_pred cccccccCCCCCCCCCCCC
Q 020701 9 SGLKAHSLPSSASYPKASK 27 (322)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (322)
++.+.|+-..|+.|+.=.|
T Consensus 2 ~H~~~H~~~k~~~C~~C~k 20 (46)
T 2ytr_A 2 SSGSSGTGEKPYKCNECGK 20 (46)
T ss_dssp CSSCCCSSCCTTCCTTTCC
T ss_pred CCCcCCCCCcCcCCCCCCC
Confidence 5678888888888876555
Done!