Query 020701
Match_columns 322
No_of_seqs 198 out of 1204
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 06:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020701.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020701hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zuea1 g.9.1.1 (A:1-42) Defen 8.7 39 0.0029 21.6 0.3 11 70-80 31-41 (42)
2 d1kf6c_ f.21.2.2 (C:) Fumarate 6.8 2.6E+02 0.019 21.6 4.5 77 98-174 37-126 (130)
3 d1pv7a_ f.38.1.2 (A:) Lactose 6.0 4.8E+02 0.035 19.6 5.8 8 306-313 282-289 (417)
4 d2yvxa3 f.57.1.1 (A:276-448) M 5.4 5.2E+02 0.038 20.1 5.8 55 157-213 112-170 (173)
5 d2bl8a1 a.29.8.2 (A:4-103) Ent 5.1 39 0.0028 25.6 -1.5 17 124-141 84-100 (100)
6 d2mrba_ g.46.1.1 (A:) Metallot 4.9 1.4E+02 0.01 17.7 1.3 24 62-85 5-28 (31)
7 d1q90m_ f.23.25.1 (M:) PetM su 4.7 2.9E+02 0.021 16.5 2.8 22 156-177 4-25 (34)
8 d1z1ba1 d.10.1.4 (A:11-59) lam 4.2 1.1E+02 0.0082 20.2 0.6 19 34-56 2-20 (49)
9 d1dnva_ b.121.5.3 (A:) Densovi 4.1 75 0.0055 29.2 -0.5 34 31-67 69-102 (415)
10 d1p7aa_ g.37.1.1 (A:) Kruppel- 3.9 2.3E+02 0.017 16.7 1.9 20 10-29 2-21 (37)
No 1
>d1zuea1 g.9.1.1 (A:1-42) Defensin-like peptide, DLP {Duckbilled platypus (Ornithorhynchus anatinus), DLP-2 [TaxId: 9258]}
Probab=8.67 E-value=39 Score=21.63 Aligned_cols=11 Identities=55% Similarity=1.035 Sum_probs=8.4
Q ss_pred cccccCCcccc
Q 020701 70 SCENRNDVDCK 80 (322)
Q Consensus 70 ~~~~~~~~~~~ 80 (322)
-|||+|.+-|+
T Consensus 31 ycen~nq~cc~ 41 (42)
T d1zuea1 31 YCENRNQKCCE 41 (42)
T ss_dssp BCSSTTEEEEC
T ss_pred eecCCCccccc
Confidence 47999987774
No 2
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=6.84 E-value=2.6e+02 Score=21.64 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCcch------hhhhHHHHhhhhhHHhhccCchHHHHHHHHHHcc-------CCcchhhHHHHHHH
Q 020701 98 LIKFVMFFGLLTLQGSQTA------VAAVDFASGLQSFPFLGDLGDISRGFASALLAAR-------NSAATVFAGTFGAL 164 (322)
Q Consensus 98 ~~~~~l~fg~~tl~~~~~~------~~~s~F~~~~~~iifLAELGDKkTf~aa~lLAar-------~~~~~Vf~Gs~~AL 164 (322)
.....|++|++.|-++..+ .-.++....+-.+.+.+-+-.-+|+|..+=-+|. -++..+..|-.++.
T Consensus 37 ~f~lvLl~Gl~~L~~g~~aw~~fv~flqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk~m~i~v~~~~~~~~~iv~~~wa~~ 116 (130)
T d1kf6c_ 37 WFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVT 116 (130)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcCccCChHHHHHHHHHHH
Confidence 3456788899988766432 2224444444455555666665677765433333 24677888888888
Q ss_pred HHHHHHHHHH
Q 020701 165 AAMTVISVIL 174 (322)
Q Consensus 165 ~lmt~LSV~l 174 (322)
++.+++..++
T Consensus 117 ~~vsvv~L~v 126 (130)
T d1kf6c_ 117 VVATIVILFV 126 (130)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766554
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.97 E-value=4.8e+02 Score=19.60 Aligned_cols=8 Identities=13% Similarity=0.052 Sum_probs=3.2
Q ss_pred hhhcCCHH
Q 020701 306 LGTFLSEK 313 (322)
Q Consensus 306 La~~lp~r 313 (322)
+.+|...+
T Consensus 282 l~~r~~~~ 289 (417)
T d1pv7a_ 282 IINRIGGK 289 (417)
T ss_dssp HHHHHCHH
T ss_pred hhcccccc
Confidence 33444443
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.40 E-value=5.2e+02 Score=20.06 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchh----HHHHHHHHHHHHHHHHh
Q 020701 157 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI----DDIAAVCLLVYFGVSTL 213 (322)
Q Consensus 157 f~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i----~~~~A~~LFl~FGl~~L 213 (322)
-.-+..++.+...+|.++|..++.+-+.+-.+-...+-|. .++.+ +++|||+-.+
T Consensus 112 ~~vi~~sl~~~~~ia~~~G~~lPlll~klg~DPA~aS~P~itti~Di~g--~~iyf~iA~~ 170 (173)
T d2yvxa3 112 LPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTG--LLIYLSVARL 170 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGSCSTTHHHHHHHHH--HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHH--HHHHHHHHHH
Confidence 3445678888899999999887766666633322234443 34444 4566666543
No 5
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im {Enterococcus faecium [TaxId: 1352]}
Probab=5.06 E-value=39 Score=25.61 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=12.6
Q ss_pred HhhhhhHHhhccCchHHH
Q 020701 124 SGLQSFPFLGDLGDISRG 141 (322)
Q Consensus 124 ~~~~~iifLAELGDKkTf 141 (322)
+++-.+ .+|.++||+||
T Consensus 84 agLN~v-Y~s~~~dksQF 100 (100)
T d2bl8a1 84 AGINGL-YRADYGDKSQF 100 (100)
T ss_dssp TTTSSC-CSSSTTCGGGC
T ss_pred cCCcee-eecCCchhccC
Confidence 455555 78999999885
No 6
>d2mrba_ g.46.1.1 (A:) Metallothionein {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.90 E-value=1.4e+02 Score=17.74 Aligned_cols=24 Identities=42% Similarity=0.809 Sum_probs=16.5
Q ss_pred hhhcCCCCcccccCCccccccccc
Q 020701 62 ELCRDPGASCENRNDVDCKNCKMT 85 (322)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~ 85 (322)
+++.--|+||.-.++-.|+.+|-+
T Consensus 5 cscaaagdsc~ca~sctck~ckct 28 (31)
T d2mrba_ 5 CSCAAAGDSCTCANSCTCKACKCT 28 (31)
T ss_dssp CCCCCSSSCCCCSSCCCCSSCCCT
T ss_pred ccccccCCcccccCceeecceeee
Confidence 455666788877777677776654
No 7
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.69 E-value=2.9e+02 Score=16.54 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcc
Q 020701 156 VFAGTFGALAAMTVISVILGRT 177 (322)
Q Consensus 156 Vf~Gs~~AL~lmt~LSV~lG~~ 177 (322)
.++|+..-++-||.+...+|.+
T Consensus 4 fiagta~tmig~tl~glaigfv 25 (34)
T d1q90m_ 4 FIAGTALTMVGMTLVGLAIGFV 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHHHHHHHh
Confidence 3567888888888888888865
No 8
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=4.19 E-value=1.1e+02 Score=20.16 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=13.1
Q ss_pred ccCCccccccCCCcccccccCCc
Q 020701 34 FPFNSLCKNQTSTSKKLSLRNPY 56 (322)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~ 56 (322)
+|+|-.||.. .-+.+|||.
T Consensus 2 LPpNLY~k~~----~y~~yr~P~ 20 (49)
T d1z1ba1 2 LPPNLYIRNN----GYYCYRDPR 20 (49)
T ss_dssp CCTTEEEETT----TEEEEECTT
T ss_pred CCccceeccC----CeEEeecCC
Confidence 5778888754 356778875
No 9
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]}
Probab=4.14 E-value=75 Score=29.22 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=28.0
Q ss_pred cccccCCccccccCCCcccccccCCcchhhhhhhcCC
Q 020701 31 SKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDP 67 (322)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (322)
+.++|+-++|++- +.|.-.||||+.|.--+....
T Consensus 69 F~lLP~Gs~v~e~---~vkvv~rn~RiAFeTnSS~T~ 102 (415)
T d1dnva_ 69 FDLLPPGSRVVEC---NVKVIFRTNRIAFETSSTVTK 102 (415)
T ss_dssp HHTCCTTCBCCCE---EEEEEEEEEEECCCCSCTTSC
T ss_pred HhhcCCCceEEEE---EEEEEEecCeeEEEecCcccc
Confidence 4489999999988 899999999999976665433
No 10
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.91 E-value=2.3e+02 Score=16.67 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=15.7
Q ss_pred ccccccCCCCCCCCCCCCCC
Q 020701 10 GLKAHSLPSSASYPKASKSC 29 (322)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (322)
+.|.|+--.||+|+.=.|++
T Consensus 2 h~R~HTgeKPy~C~~C~k~F 21 (37)
T d1p7aa_ 2 STRGSTGIKPFQCPDCDRSF 21 (37)
T ss_dssp CSSTTCCSSSBCCTTTCCCB
T ss_pred CCCccCCccCeEeCCCCCEe
Confidence 46889999999998766644
Done!