BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020702
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 47 WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106
+AWPF PVD LGLHDY+++I+ PMD ST+K KM+ +D YR+ +E ADVRL+F N
Sbjct: 27 YAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRD---YRDAQEFAADVRLMFSN 83
Query: 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
KYN DV MA+ L + FE ++ ++
Sbjct: 84 CYKYNPPDHDVVAMARKLQDVFEFRYAKM 112
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 66/97 (68%), Gaps = 4/97 (4%)
Query: 41 FITQHK-WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 99
F +H +AWPF PVDVE LGLHDY ++I+ PMD STIK+K++ ++ YR+ +E AD
Sbjct: 14 FAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEARE---YRDAQEFGAD 70
Query: 100 VRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 136
VRL+F N KYN +V MA+ L + FE ++ ++L
Sbjct: 71 VRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKML 107
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 47 WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106
+AWPF PVD LGLHDY+++I+ PMD ST+K KM+ +D YR+ +E ADVRL+F N
Sbjct: 25 YAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRD---YRDAQEFAADVRLMFSN 81
Query: 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
KYN DV MA+ L + FE ++ ++
Sbjct: 82 CYKYNPPDHDVVAMARKLQDVFEFRYAKM 110
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 47 WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106
+AWPF PVD LGLHDY+++I+ PMD ST+K KM+ +D YR+ +E ADVRL+F N
Sbjct: 21 YAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRD---YRDAQEFAADVRLMFSN 77
Query: 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
KYN DV MA+ L + FE ++ ++
Sbjct: 78 CYKYNPPDHDVVAMARKLQDVFEFRYAKM 106
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 4/96 (4%)
Query: 41 FITQHK-WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 99
F +H +AWPF PVDVE LGLHDY ++I+ PMD STIK+K++ ++ YR+ +E AD
Sbjct: 35 FAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEARE---YRDAQEFGAD 91
Query: 100 VRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
VRL+F N KYN +V MA+ L + FE ++ ++
Sbjct: 92 VRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 127
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 4/96 (4%)
Query: 41 FITQHK-WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 99
F +H +AWPF PVDVE LGLHDY ++I+ PMD STIK+K++ ++ YR+ +E AD
Sbjct: 33 FAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEARE---YRDAQEFGAD 89
Query: 100 VRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
VRL+F N KYN +V MA+ L + FE ++ ++
Sbjct: 90 VRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 125
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 4/96 (4%)
Query: 41 FITQHK-WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 99
F +H +AWPF PVDVE LGLHDY ++I+ PMD STIK+K++ ++ YR+ +E AD
Sbjct: 22 FAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESRE---YRDAQEFGAD 78
Query: 100 VRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
VRL+F N KYN +V MA+ L + FE ++ ++
Sbjct: 79 VRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 114
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 3/83 (3%)
Query: 47 WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106
+AWPF +PVD + LGLH+YY+V++ PMD TIK KMD ++ Y++ E ADVRL+F N
Sbjct: 34 YAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQE---YKDAYEFAADVRLMFMN 90
Query: 107 AMKYNDERDDVHVMAKSLLEKFE 129
KYN +V MA++L + FE
Sbjct: 91 CYKYNPPDHEVVAMARTLQDVFE 113
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 47 WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106
+AWPF PVD E L LHDY+++I+ PMD ST+K KMDG++ Y + + ADVRL+F N
Sbjct: 27 YAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGRE---YPDAQGFAADVRLMFSN 83
Query: 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
KYN +V MA+ L + FE ++ ++
Sbjct: 84 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 112
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 47 WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106
+AWPF PVD E L LHDY+++I+ PMD ST+K KMDG++ Y + + ADVRL+F N
Sbjct: 32 YAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGRE---YPDAQGFAADVRLMFSN 88
Query: 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
KYN +V MA+ L + FE ++ ++
Sbjct: 89 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 117
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 41 FITQHK-WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 99
F +H +AWPF PVDVE LGLHDY ++I+ P D STIK+K++ ++ YR+ +E AD
Sbjct: 20 FAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESRE---YRDAQEFGAD 76
Query: 100 VRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKW 132
VRL F N KYN +V A+ L + FE ++
Sbjct: 77 VRLXFSNCYKYNPPDHEVVAXARKLQDVFEXRF 109
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ +R + +H++AWPF PVD L L DYY++I+ PMD TIK ++ + Y
Sbjct: 26 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRL---ENNYY 82
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
N +E D +F N YN DD+ +MA++L + F +K
Sbjct: 83 WNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 123
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ +R + +H++AWPF PVD L L DYY++I+ PMD TIK ++ + Y
Sbjct: 22 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRL---ENNYY 78
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
N +E D +F N YN DD+ +MA++L + F +K
Sbjct: 79 WNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 119
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ +R + +H++AWPF PVD L L DYY++I+ PMD TIK ++ + Y
Sbjct: 22 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRL---ENNYY 78
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
N +E D +F N YN DD+ +MA++L + F +K
Sbjct: 79 WNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 119
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ +R + +H++AWPF PVD L L DYY++I+ PMD TIK ++ + Y
Sbjct: 42 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRL---ENNYY 98
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
N +E D +F N YN DD+ +MA++L + F +K
Sbjct: 99 WNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 139
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQF R + +H ++WPF PVD L L DYY +I+ PMD +TIK +++ K Y
Sbjct: 15 LQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENK---YY 71
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
E D +F N YN DD+ VMA++L + F +K Q+
Sbjct: 72 EKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQM 116
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ + + +H++AWPF PVD LGL DY+++I++PMD TIK ++ + Y
Sbjct: 33 LQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRL---ENNYY 89
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
E D +F N YN DD+ +MA++L + F +K
Sbjct: 90 WAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQK 130
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ + + +H++AWPF PVD LGL DY+++I++PMD TIK ++ + Y
Sbjct: 33 LQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRL---ENNYY 89
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
E D +F N YN DD+ +MA++L + F +K
Sbjct: 90 WAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQK 130
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ + + +H ++WPF PVD L L DYY +I+ PMD +TIK +++ K Y
Sbjct: 14 LQYLQKVVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENK---YY 70
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
E D +F N YN DD+ +MA++L + F +K Q+
Sbjct: 71 AKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQM 115
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ + +H++AWPF PVD L L DY+++I+ PMD TIK ++ + Y
Sbjct: 22 LQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRL---ENNYY 78
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
+ E D +F N YN DD+ +MA++L + F +K Q+
Sbjct: 79 WSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQM 123
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ + +H++AWPF PVD L L DY+++I+ PMD TIK ++ + Y
Sbjct: 20 LQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRL---ENNYY 76
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
+ E D +F N YN DD+ +MA++L + F +K Q+
Sbjct: 77 WSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQM 121
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ + +H++AWPF PVD L L DY+++I+ PMD TIK ++ + Y
Sbjct: 18 LQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRL---ENNYY 74
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135
+ E D +F N YN DD+ +MA++L + F +K Q+
Sbjct: 75 WSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQM 119
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 21 GGCKNLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKN 80
G + LQ+ + + +H++AWPF PVD LGL DY+++I++P D TIK
Sbjct: 3 SGSSGRVTNQLQYLHKVVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKR 62
Query: 81 KMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
++ + Y E D F N YN DD+ + A++L + F +K
Sbjct: 63 RL---ENNYYWAASECXQDFNTXFTNCYIYNKPTDDIVLXAQTLEKIFLQK 110
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
LQ+ + + +H++AWPF PVD LGL DY+++I++P D TIK ++ + Y
Sbjct: 7 LQYLHKVVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRL---ENNYY 63
Query: 91 RNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
E D F N YN DD+ + A++L + F +K
Sbjct: 64 WAASECXQDFNTXFTNCYIYNKPTDDIVLXAQTLEKIFLQK 104
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 45 HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104
H+ AWPF+ PV+++ + Y +VI+KPMDFSTI+ K+ Y N+ DVRLVF
Sbjct: 28 HEDAWPFLLPVNLKLVP--GYKKVIKKPMDFSTIREKLSSGQ---YPNLETFALDVRLVF 82
Query: 105 KNAMKYNDERDDVHVMAKSLLEKFEEKW 132
N +N++ D+ ++ + FE+KW
Sbjct: 83 DNCETFNEDDSDIGRAGHNMRKYFEKKW 110
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 45 HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104
H+ AWPF+ PV+++ + Y +VI+KPMDFSTI+ K+ Y N+ DVRLVF
Sbjct: 25 HEDAWPFLLPVNLKLVP--GYKKVIKKPMDFSTIREKLSSGQ---YPNLETFALDVRLVF 79
Query: 105 KNAMKYNDERDDVHVMAKSLLEKFEEKW 132
N +N++ D+ ++ + FE+KW
Sbjct: 80 DNCETFNEDDSDIGRAGHNMRKYFEKKW 107
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 50 PFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTG-YRNVREIYADVRLVFKNAM 108
PF PVD + LG+ DY+++++ PMD STIK K+D TG Y+ + DV L+F NA
Sbjct: 32 PFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLD----TGQYQEPWQYVDDVWLMFNNAW 87
Query: 109 KYNDERDDVHVMAKSLLEKFEEK 131
YN + V+ L E FE++
Sbjct: 88 LYNRKTSRVYKFCSKLAEVFEQE 110
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 50 PFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTG-YRNVREIYADVRLVFKNAM 108
PF PVD + LG+ DY+++++ PMD STIK K+D TG Y+ + DV L+F NA
Sbjct: 34 PFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLD----TGQYQEPWQYVDDVWLMFNNAW 89
Query: 109 KYNDERDDVHVMAKSLLEKFEEK 131
YN + V+ L E FE++
Sbjct: 90 LYNRKTSRVYKFCSKLAEVFEQE 112
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 50 PFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTG-YRNVREIYADVRLVFKNAM 108
PF PVD + LG+ DY+++++ PMD STIK K+D TG Y+ + D+ L+F NA
Sbjct: 37 PFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLD----TGQYQEPWQYVDDIWLMFNNAW 92
Query: 109 KYNDERDDVHVMAKSLLEKFEEK 131
YN + V+ L E FE++
Sbjct: 93 LYNRKTSRVYKYCSKLSEVFEQE 115
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 42 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 101
+ H AWPF+ PV+ E + DYY+ I++PMD ST++ K++ Y+ + + D R
Sbjct: 25 LQNHAAAWPFLQPVNKEEVP--DYYDFIKEPMDLSTMEIKLES---NKYQKMEDFIYDAR 79
Query: 102 LVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPK 138
LVF N YN E + A LEKF ++ +P+
Sbjct: 80 LVFNNCRMYNGENTSYYKYANR-LEKFFNNKVKEIPE 115
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 14 IGKKLLEGGCKNLSAS-----------LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGL 62
IGK +E C NL S + Q + ++ H+ + F PV +
Sbjct: 54 IGKPEVEYDCDNLQHSKKGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SI 110
Query: 63 HDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAK 122
+YY++I+KPMD ST+K K+ K Y+ + ADVRL+FKN ++N+ V V A
Sbjct: 111 PNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYAD 170
Query: 123 S 123
+
Sbjct: 171 T 171
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 41 FITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADV 100
F+ H+ + F PV L + DYY++I+ PMD STIK ++ +D + Y + AD
Sbjct: 31 FLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQ-EDYSMYSKPEDFVADF 86
Query: 101 RLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPK 138
RL+F+N ++N+ +V L FEE L P+
Sbjct: 87 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPE 124
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 41 FITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADV 100
F+ H+ + F PV L + DYY++I+ PMD STIK ++ +D + Y + AD
Sbjct: 92 FLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQ-EDYSMYSKPEDFVADF 147
Query: 101 RLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 137
RL+F+N ++N+ +V L FEE L P
Sbjct: 148 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 184
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
L+ F+R + K F PVD+E + DY EVI++PMD ST+ K+D Y
Sbjct: 13 LRLFLRDVTKRLATDKRFNIFSKPVDIEEVS--DYLEVIKEPMDLSTVITKIDKH---NY 67
Query: 91 RNVREIYADVRLVFKNAMKYNDERD 115
++ D+ L+ NA++YN ++D
Sbjct: 68 LTAKDFLKDIDLICSNALEYNPDKD 92
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 40 SFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 99
+ I Q + + PF PVD+ + DY ++I+ PMDF T++ +D + Y + E D
Sbjct: 20 NLIFQCEDSEPFRQPVDL--VEYPDYRDIIDTPMDFGTVRETLDAGN---YDSPLEFCKD 74
Query: 100 VRLVFKNAMKYN-DERDDVHVMAKSLLEKFEEK 131
+RL+F NA Y ++R ++ M L FEEK
Sbjct: 75 IRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEK 107
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 42 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 101
+ HK +WPF+ PVD +YY++I+ PMD S+++ K+ +G Y E D++
Sbjct: 28 VKAHKDSWPFLEPVDESYAP--NYYQIIKAPMDISSMEKKL---NGGLYCTKEEFVNDMK 82
Query: 102 LVFKNAMKYNDERDDVHVMAKSL 124
+F+N KYN E + M+ +L
Sbjct: 83 TMFRNCRKYNGESSEYTKMSDNL 105
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 45 HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104
HK AWPF+ PVD DYY VI++PMD +T++ ++ + Y + E AD+ +F
Sbjct: 87 HKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRR---YYEKLTEFVADMTKIF 141
Query: 105 KNAMKYNDERDDVHVMAKSLLEKFEEK 131
N YN + A+ L F +K
Sbjct: 142 DNCRYYNPSDSPFYQCAEVLESFFVQK 168
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 45 HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104
HK AWPF+ PVD DYY VI++PMD +T++ ++ + Y + E AD+ +F
Sbjct: 35 HKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRR---YYEKLTEFVADMTKIF 89
Query: 105 KNAMKYNDERDDVHVMAKSLLEKFEEK 131
N YN + A+ L F +K
Sbjct: 90 DNCRYYNPSDSPFYQCAEVLESFFVQK 116
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 42 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 101
+ HK AWPF+ PVD DYY VI++PMD +T++ ++ + Y + E AD+
Sbjct: 25 LQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRR---YYEKLTEFVADMT 79
Query: 102 LVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
+F N YN + A+ L F +K
Sbjct: 80 AIFDNCRYYNPSDSPFYQCAEVLESFFVQK 109
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 45 HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104
HK AWPF+ PVD DYY VI++PMD +T++ ++ + Y + E AD+ +F
Sbjct: 87 HKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRR---YYEKLTEFVADMTKIF 141
Query: 105 KNAMKYNDERDDVHVMAKSLLEKFEEK 131
N YN + A+ L F +K
Sbjct: 142 DNCRYYNPSDSPFYQCAEVLESFFVQK 168
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 29 SLLQFFVRQARSFITQHKWAWPFMHPVD-VEGLGLHDYYEVIEKPMDFSTIKNKMDGKDG 87
S L+ ++Q +S H+ AWPFM PV E G YYEVI PMD T+ ++ +
Sbjct: 18 STLKSILQQVKS----HQSAWPFMEPVKRTEAPG---YYEVIRFPMDLKTMSERLKNR-- 68
Query: 88 TGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKF 128
Y + + AD++ VF N +YN + + A ++LEKF
Sbjct: 69 -YYVSKKLFMADLQRVFTNCKEYNPPESEYYKCA-NILEKF 107
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 42 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 101
+ HK AWPF+ PVD DYY VI++PMD +T++ ++ + Y + E AD+
Sbjct: 25 LQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRR---YYEKLTEFVADMT 79
Query: 102 LVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
+F N YN + A+ L F +K
Sbjct: 80 KIFDNCRYYNPSDSPFYQCAEVLESFFVQK 109
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 29 SLLQFFVRQARSFITQHKWAWPFMHPVD-VEGLGLHDYYEVIEKPMDFSTIKNKMDGKDG 87
S L+ ++Q +S H+ AWPFM PV E G YYEVI PMD T+ ++ +
Sbjct: 16 STLKSILQQVKS----HQSAWPFMEPVKRTEAPG---YYEVIRFPMDLKTMSERLKNR-- 66
Query: 88 TGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKF 128
Y + + AD++ VF N +YN + + A ++LEKF
Sbjct: 67 -YYVSKKLFMADLQRVFTNCKEYNPPESEYYKCA-NILEKF 105
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 40 SFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 99
+ I Q + + PF PVD+ L DY ++I+ PMDF+T++ + + Y + E+ D
Sbjct: 31 NLIFQCEDSEPFRQPVDL--LEYPDYRDIIDTPMDFATVRETL---EAGNYESPMELCKD 85
Query: 100 VRLVFKNAMKYN-DERDDVHVMAKSLLEKFEE 130
VRL+F N+ Y +R ++ M+ L FEE
Sbjct: 86 VRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEE 117
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 42 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIY-ADV 100
I H AWPFM PV DYYEVI P+D T+ ++ + Y R+++ AD+
Sbjct: 15 IKSHPSAWPFMEPVKKSEAP--DYYEVIRFPIDLKTMTERLRSR----YYVTRKLFVADL 68
Query: 101 RLVFKNAMKYNDERDDVHVMAKSLLEKF 128
+ V N +YN D + S LEKF
Sbjct: 69 QRVIANCREYNPP-DSEYCRCASALEKF 95
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 42 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIY-ADV 100
I H AWPFM PV + DYYEVI P+D T+ ++ + Y R+++ AD+
Sbjct: 19 IKSHPSAWPFMEPV--KKSEAPDYYEVIRFPIDLKTMTERLRSR----YYVTRKLFVADL 72
Query: 101 RLVFKNAMKYNDERDDVHVMAKSLLEKF 128
+ V N +YN D + S LEKF
Sbjct: 73 QRVIANCREYNPP-DSEYCRCASALEKF 99
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 45 HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104
HK AWPF+ PVD DYY VI++P D +T + ++ + Y + E AD +F
Sbjct: 87 HKXAWPFLEPVDPNDAP--DYYGVIKEPXDLATXEERVQRR---YYEKLTEFVADXTKIF 141
Query: 105 KNAMKYNDERDDVHVMAKSLLEKFEEK 131
N YN + A+ L F +K
Sbjct: 142 DNCRYYNPSDSPFYQCAEVLESFFVQK 168
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 48 AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107
+WPF HPV+ + + DYY+VI PMD TI+ + Y++ DV L+ N+
Sbjct: 188 SWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKH---KYQSRESFLDDVNLILANS 242
Query: 108 MKYN 111
+KYN
Sbjct: 243 VKYN 246
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 28 ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDG 87
+S+L+ + R +PF PV+ + + DYY++I +PMD T++ + +
Sbjct: 49 SSILESIINDMRDLPN----TYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKR-- 100
Query: 88 TGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
Y + E + L+ KN+ YN + + +++S+L+ +EK
Sbjct: 101 -LYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEK 143
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 48 AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107
+WPF HPV+ + + DYY+VI PMD TI+ + Y++ DV L+ N+
Sbjct: 155 SWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKH---KYQSRESFLDDVNLILANS 209
Query: 108 MKYN 111
+KYN
Sbjct: 210 VKYN 213
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 28 ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDG 87
+S+L+ + R +PF PV+ + + DYY++I +PMD T++ + +
Sbjct: 16 SSILESIINDMRDLPN----TYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKR-- 67
Query: 88 TGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
Y + E + L+ KN+ YN + + +++S+L+ +EK
Sbjct: 68 -LYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEK 110
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 48 AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107
+WPF HPV+ + + DYY+VI PMD TI+ + Y++ DV L+ N+
Sbjct: 167 SWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKH---KYQSRESFLDDVNLILANS 221
Query: 108 MKYN 111
+KYN
Sbjct: 222 VKYN 225
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 28 ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDG 87
+S+L+ + R +PF PV+ + + DYY++I +PMD T++ + +
Sbjct: 28 SSILESIINDMRDLPN----TYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKR-- 79
Query: 88 TGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131
Y + E + L+ KN+ YN + + +++S+L+ +EK
Sbjct: 80 -LYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEK 122
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 48 AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107
+WPF HPV+ + + DYY+VI PMD TI+ + Y++ DV L+ N+
Sbjct: 48 SWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKH---KYQSRESFLDDVNLILANS 102
Query: 108 MKYN 111
+KYN
Sbjct: 103 VKYN 106
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
L+ F+R + K F PV DY EVI++PMD ST+ K+D + Y
Sbjct: 13 LRLFLRDVTKRLATDKRFNIFSKPV-------SDYLEVIKEPMDLSTVITKIDKHN---Y 62
Query: 91 RNVREIYADVRLVFKNAMKYNDERD 115
++ D+ L+ NA++YN ++D
Sbjct: 63 LTAKDFLKDIDLICSNALEYNPDKD 87
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY 90
L+ F+R + K F PVD + + DY VI++PMD S++ +K+D Y
Sbjct: 11 LRIFLRNVTHRLAIDKRFRVFTKPVDPDEVP--DYVTVIKQPMDLSSVISKIDLH---KY 65
Query: 91 RNVREIYADVRLVFKNAMKYNDERD 115
V++ D+ L+ NA++YN +RD
Sbjct: 66 LTVKDYLRDIDLICSNALEYNPDRD 90
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 51 FMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 110
F PV ++ + DY + I+ PMDF+T++ +++ + GY+N+ E D L+ N MKY
Sbjct: 34 FAQPVSLKEVP--DYLDHIKHPMDFATMRKRLEAQ---GYKNLHEFEEDFDLIIDNCMKY 88
Query: 111 NDERDDVHVMA 121
N RD V A
Sbjct: 89 N-ARDTVFYRA 98
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 30 LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTG 89
LL+ F+RQ + +A+P D G Y +I+ PMDF T+K+K+ +
Sbjct: 17 LLEHFLRQLQRKDPHGFFAFPV---TDAIAPG---YSMIIKHPMDFGTMKDKIVANE--- 67
Query: 90 YRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLE 126
Y++V E AD +L+ NAM YN + +AK +L
Sbjct: 68 YKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILH 104
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 48 AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107
+WPF HPV+ + + DYY++I P+D TI+ + Y++ DV L+ N+
Sbjct: 45 SWPFHHPVNKKFVP--DYYKMIVNPVDLETIRKNISKH---KYQSRESFLDDVNLILANS 99
Query: 108 MKYN 111
+KYN
Sbjct: 100 VKYN 103
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 42 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 101
+++++ F VD + DYY+VI+ P FS IK K+ K G Y E DV+
Sbjct: 33 LSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKL--KKGQ-YAYPSEFVKDVQ 89
Query: 102 LVFKNAMKYNDERDDVHVMAKSLLEKF 128
L+F N YN V + K++ F
Sbjct: 90 LIFDNCSLYNTSNSVVAITGKNIETYF 116
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 11 MHFIGKKLLEGGCKNLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIE 70
+H++ K L++ K ++ +LL ++ + K + PFM VD + L +YYE++
Sbjct: 197 LHYLNK-LVDATEKKINQALLG--ASSPKNLDDKVKLSEPFMELVDKDELP--EYYEIVH 251
Query: 71 KPMDFSTIKNKMD-GKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKF 128
PM S +K ++ G+ Y + + D+ LVF+NA +ND ++ A +L F
Sbjct: 252 SPMALSIVKQNLEIGQ----YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 306
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 11 MHFIGKKLLEGGCKNLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIE 70
+H++ K L++ K ++ +LL ++ + K + PFM VD + L +YYE++
Sbjct: 182 LHYLNK-LVDATEKKINQALLG--ASSPKNLDDKVKLSEPFMELVDKDELP--EYYEIVH 236
Query: 71 KPMDFSTIKNKMD-GKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKF 128
PM S +K ++ G+ Y + + D+ LVF+NA +ND ++ A +L F
Sbjct: 237 SPMALSIVKQNLEIGQ----YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 291
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 65 YYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSL 124
Y +I+ PMDFST+K K+ D Y+++ E+ + +L+ NAM YN + AK L
Sbjct: 41 YSMIIKHPMDFSTMKEKIKNND---YQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKL 97
Query: 125 L 125
L
Sbjct: 98 L 98
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 64 DYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDE----RDDVHV 119
DYY++I +PMD I++ + G + E D++L+F+NA YN+E +D H+
Sbjct: 63 DYYKIILEPMDLKIIEHNIRNDKYAGEEGMIE---DMKLMFRNARHYNEEGSQVYNDAHI 119
Query: 120 MAKSLLEKFEE 130
+ K L EK +E
Sbjct: 120 LEKLLKEKRKE 130
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 64 DYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 123
DYY +I++P+D TI ++ ++G+ Y+++ + D+ L+ KNA YN+ V A S
Sbjct: 47 DYYAIIKEPIDLKTIAQRI--QNGS-YKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 103
Query: 124 LLEKF 128
+ + F
Sbjct: 104 IKKIF 108
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 64 DYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 123
DYY +I++P+D TI ++ ++G+ Y+++ + D+ L+ KNA YN+ V A S
Sbjct: 46 DYYAIIKEPIDLKTIAQRI--QNGS-YKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 102
Query: 124 LLEKF 128
+ + F
Sbjct: 103 IKKIF 107
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4
Et Domain
Length = 90
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 193 KCRKMSTEEKKNLGTALTRLSPEDLCKALEIVAENNPSF-HATAQEVDLDMDAQSELTLW 251
KC+ MS EEK+ L + +L E L + + I+ PS ++ E+++D + TL
Sbjct: 14 KCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLR 73
Query: 252 RLKVFVQESLK 262
L+ +V L+
Sbjct: 74 ELERYVTSCLR 84
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 64 DYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 123
DYY +I++P+D TI ++ ++G+ Y+++ + D+ L+ KNA YN+ V A S
Sbjct: 44 DYYAIIKEPIDLKTIAQRI--QNGS-YKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 100
Query: 124 LLEKF 128
+ + F
Sbjct: 101 IKKIF 105
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 62 LHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 111
L +YYE+I KP+DF IK ++ YR++ ++ DV L+ +NA +N
Sbjct: 48 LPEYYELIRKPVDFKKIKERIRNH---KYRSLNDLEKDVMLLCQNAQTFN 94
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 62 LHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDE 113
L +YYE+I KP+DF IK ++ YR++ ++ DV L+ +NA +N E
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNH---KYRSLNDLEKDVMLLCQNAQTFNLE 97
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 62 LHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDE 113
L +YYE+I KP+DF IK ++ YR++ ++ DV L+ +NA +N E
Sbjct: 44 LPEYYELIRKPVDFKKIKERIRNH---KYRSLNDLEKDVMLLCQNAQTFNLE 92
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 62 LHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVH 118
L +YYE+I KP+DF IK ++ YR++ ++ DV L+ NA +N E ++
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHK---YRSLGDLEKDVMLLCHNAQTFNLEGSQIY 102
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 62 LHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERD----DV 117
L DYY I+KPMD I++ M Y+++ + D ++F NA YN+ D
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHM---MANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDA 107
Query: 118 HVMAKSLLE 126
V+ K LLE
Sbjct: 108 LVLHKVLLE 116
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 62 LHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERD----DV 117
L DYY I+KPMD I++ M Y+++ + D ++F NA YN+ D
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHM---MANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDA 107
Query: 118 HVMAKSLLE 126
V+ K LLE
Sbjct: 108 LVLHKVLLE 116
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 11 MHFIGKKLLEGGCKNLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIE 70
+H++ K L++ K ++ +LL ++ + K + PF VD + L +YYE++
Sbjct: 141 LHYLNK-LVDATEKKINQALLG--ASSPKNLDDKVKLSEPFXELVDKDELP--EYYEIVH 195
Query: 71 KPMDFSTIKNKMD-GKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKF 128
P S +K ++ G+ Y + + D LVF+NA +ND ++ A +L F
Sbjct: 196 SPXALSIVKQNLEIGQ----YSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTLTNYF 250
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 11 MHFIGKKLLEGGCKNLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIE 70
+H++ K L++ K ++ +LL ++ + K + PF VD + L +YYE++
Sbjct: 147 LHYLNK-LVDATEKKINQALLG--ASSPKNLDDKVKLSEPFXELVDKDELP--EYYEIVH 201
Query: 71 KPMDFSTIKNKMD-GKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKF 128
P S +K ++ G+ Y + + D LVF+NA +ND ++ A +L F
Sbjct: 202 SPXALSIVKQNLEIGQ----YSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTLTNYF 256
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 22 GCKNLSASLLQFF--VRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIK 79
G +NL +Q + VR R+ Q A PF H + DYY+ I+ P+ I+
Sbjct: 14 GTENLYFQSMQLYDTVRSCRNNQGQL-IAEPFYHLPSKKKYP--DYYQQIKMPISLQQIR 70
Query: 80 NKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 111
K+ ++ Y + + D+ L+F+NA +YN
Sbjct: 71 TKLKNQE---YETLDHLECDLNLMFENAKRYN 99
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 64 DYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 111
DY + I+KPMDF T+K ++ Y N + D L+ N +KYN
Sbjct: 39 DYLDHIKKPMDFFTMKQNLEAYR---YLNFDDFEEDFNLIVSNCLKYN 83
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 64 DYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 110
DYYEV+ +P+D I+ K+ ++ Y +V + AD +L+F NA Y
Sbjct: 43 DYYEVVSQPIDLMKIQQKLKMEE---YDDVNLLTADFQLLFNNAKSY 86
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 64 DYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIY-ADVRLVFKNAMKYNDERDDV 117
DYYE I P+D TI+ ++ TGY E + AD+ VF+NA KY + V
Sbjct: 47 DYYEKISDPLDLITIEKQI----LTGYYKTVEAFDADMLKVFRNAEKYYGRKSPV 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,607,450
Number of Sequences: 62578
Number of extensions: 266167
Number of successful extensions: 797
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 92
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)