Query 020702
Match_columns 322
No_of_seqs 211 out of 1436
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:28:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 5.2E-34 1.1E-38 294.9 8.8 239 28-269 220-534 (640)
2 cd05497 Bromo_Brdt_I_like Brom 100.0 9.6E-30 2.1E-34 207.4 11.0 105 28-135 3-107 (107)
3 cd05495 Bromo_cbp_like Bromodo 100.0 8.5E-29 1.8E-33 202.2 11.4 104 29-135 2-106 (108)
4 cd05496 Bromo_WDR9_II Bromodom 100.0 1.4E-28 3.1E-33 204.0 10.6 106 29-139 4-110 (119)
5 cd05505 Bromo_WSTF_like Bromod 99.9 7.3E-28 1.6E-32 193.0 9.7 94 33-131 3-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 7E-28 1.5E-32 193.5 9.5 99 31-132 1-99 (99)
7 cd05502 Bromo_tif1_like Bromod 99.9 3E-27 6.6E-32 193.3 11.3 103 30-138 4-109 (109)
8 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.7E-27 3.7E-32 190.9 9.4 95 33-132 3-97 (97)
9 cd05498 Bromo_Brdt_II_like Bro 99.9 2.1E-27 4.7E-32 191.7 9.9 98 32-132 2-102 (102)
10 cd05508 Bromo_RACK7 Bromodomai 99.9 3.5E-27 7.7E-32 189.7 10.0 97 29-131 2-98 (99)
11 cd05504 Bromo_Acf1_like Bromod 99.9 6.7E-27 1.5E-31 193.0 10.9 101 30-135 12-112 (115)
12 cd05507 Bromo_brd8_like Bromod 99.9 6.8E-27 1.5E-31 189.7 10.4 100 30-134 3-102 (104)
13 cd05500 Bromo_BDF1_2_I Bromodo 99.9 6.6E-27 1.4E-31 189.4 10.1 100 29-131 3-102 (103)
14 cd05499 Bromo_BDF1_2_II Bromod 99.9 5.9E-27 1.3E-31 189.3 9.8 97 33-132 3-102 (102)
15 cd05509 Bromo_gcn5_like Bromod 99.9 1.4E-26 2.9E-31 186.8 10.3 99 31-134 2-100 (101)
16 cd05501 Bromo_SP100C_like Brom 99.9 2.9E-26 6.3E-31 184.8 11.0 96 33-136 5-100 (102)
17 cd05510 Bromo_SPT7_like Bromod 99.9 2.9E-26 6.4E-31 188.3 11.2 103 28-135 5-109 (112)
18 cd05528 Bromo_AAA Bromodomain; 99.9 3.9E-26 8.5E-31 187.6 11.2 105 29-138 2-110 (112)
19 cd05513 Bromo_brd7_like Bromod 99.9 9.3E-26 2E-30 181.1 9.5 92 31-127 2-93 (98)
20 cd05511 Bromo_TFIID Bromodomai 99.9 9.2E-26 2E-30 185.5 9.7 100 31-135 1-100 (112)
21 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.3E-25 2.8E-30 183.2 9.3 100 31-135 2-107 (107)
22 cd05512 Bromo_brd1_like Bromod 99.9 2.5E-25 5.4E-30 178.7 9.6 91 32-127 3-93 (98)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 6.3E-25 1.4E-29 177.8 8.7 97 31-132 1-103 (103)
24 smart00297 BROMO bromo domain. 99.9 8.4E-24 1.8E-28 171.0 10.8 102 28-134 5-106 (107)
25 cd05515 Bromo_polybromo_V Brom 99.9 7E-24 1.5E-28 172.4 9.6 96 32-132 2-103 (105)
26 cd05517 Bromo_polybromo_II Bro 99.9 4.4E-24 9.5E-29 173.0 8.3 95 31-130 1-101 (103)
27 cd05524 Bromo_polybromo_I Brom 99.9 8.6E-24 1.9E-28 174.0 9.6 100 32-136 4-109 (113)
28 cd05529 Bromo_WDR9_I_like Brom 99.9 1.5E-23 3.2E-28 176.2 11.0 102 28-133 22-126 (128)
29 cd05520 Bromo_polybromo_III Br 99.9 1.2E-23 2.7E-28 170.3 8.8 91 36-131 6-102 (103)
30 cd05525 Bromo_ASH1 Bromodomain 99.9 2.6E-23 5.6E-28 169.3 9.6 96 31-131 3-104 (106)
31 cd05518 Bromo_polybromo_IV Bro 99.9 3.3E-23 7.2E-28 167.8 8.9 94 33-131 3-102 (103)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2.6E-22 5.7E-27 162.9 9.1 94 33-131 4-103 (104)
33 cd04369 Bromodomain Bromodomai 99.9 3.2E-22 6.8E-27 157.4 8.5 96 32-132 2-99 (99)
34 PF00439 Bromodomain: Bromodom 99.9 2.5E-22 5.4E-27 155.5 7.6 84 35-123 1-84 (84)
35 cd05492 Bromo_ZMYND11 Bromodom 99.9 1.7E-21 3.7E-26 159.1 10.0 99 34-135 4-106 (109)
36 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 1.3E-21 2.9E-26 159.2 9.3 95 31-132 2-102 (106)
37 KOG1245 Chromatin remodeling c 99.7 4.9E-18 1.1E-22 186.9 7.3 98 35-138 1306-1403(1404)
38 cd05526 Bromo_polybromo_VI Bro 99.7 2.5E-17 5.3E-22 134.5 8.9 99 30-135 3-107 (110)
39 COG5076 Transcription factor i 99.7 5.6E-17 1.2E-21 158.7 9.9 110 25-139 137-252 (371)
40 KOG1472 Histone acetyltransfer 99.4 9E-14 2E-18 143.4 6.4 101 30-135 606-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 3.1E-13 6.8E-18 111.4 4.5 81 33-113 6-90 (114)
42 cd05491 Bromo_TBP7_like Bromod 99.0 2.8E-10 6.1E-15 93.6 3.3 41 71-114 63-103 (119)
43 KOG0955 PHD finger protein BR1 99.0 7.1E-10 1.5E-14 119.2 6.9 100 31-135 566-665 (1051)
44 KOG0008 Transcription initiati 99.0 8.1E-10 1.8E-14 118.9 6.4 95 33-132 1385-1479(1563)
45 KOG1472 Histone acetyltransfer 98.7 1.6E-08 3.6E-13 105.0 4.5 81 44-129 300-380 (720)
46 KOG0386 Chromatin remodeling c 98.6 4.8E-08 1E-12 103.5 7.0 99 33-136 1027-1131(1157)
47 KOG1827 Chromatin remodeling c 98.6 7.7E-08 1.7E-12 98.6 6.4 101 28-133 50-156 (629)
48 KOG0008 Transcription initiati 98.6 8.8E-08 1.9E-12 103.7 6.6 99 30-133 1261-1359(1563)
49 KOG1474 Transcription initiati 98.6 1.9E-08 4.1E-13 105.1 1.3 91 42-135 4-94 (640)
50 KOG1828 IRF-2-binding protein 97.9 1.9E-06 4E-11 83.4 -0.1 87 36-127 25-111 (418)
51 KOG1828 IRF-2-binding protein 97.7 3.1E-05 6.8E-10 75.1 3.9 82 39-126 217-298 (418)
52 cd05493 Bromo_ALL-1 Bromodomai 96.8 0.0013 2.7E-08 55.5 3.7 67 72-141 59-125 (131)
53 COG5076 Transcription factor i 96.8 0.00044 9.5E-09 68.0 0.9 90 39-133 272-361 (371)
54 KOG0644 Uncharacterized conser 90.7 0.23 4.9E-06 53.2 3.5 61 68-131 1049-1109(1113)
55 KOG0732 AAA+-type ATPase conta 89.7 0.23 5.1E-06 54.7 2.8 66 46-114 531-601 (1080)
56 PF14372 DUF4413: Domain of un 74.5 9.2 0.0002 30.5 5.6 49 87-135 3-51 (101)
57 KOG0644 Uncharacterized conser 67.6 2.7 6E-05 45.3 1.4 62 53-119 88-179 (1113)
58 KOG1827 Chromatin remodeling c 52.7 2.3 5E-05 44.7 -2.2 75 48-127 213-287 (629)
59 KOG0995 Centromere-associated 47.6 79 0.0017 33.1 7.9 74 23-107 63-137 (581)
60 PF14933 CEP19: CEP19-like pro 42.6 88 0.0019 27.3 6.4 37 238-274 106-142 (159)
61 PF11116 DUF2624: Protein of u 42.2 39 0.00084 26.5 3.7 71 190-260 8-82 (85)
62 PF04472 DUF552: Protein of un 31.0 1.6E+02 0.0035 21.7 5.5 42 215-264 10-51 (73)
63 TIGR02606 antidote_CC2985 puta 27.4 87 0.0019 23.3 3.4 26 76-104 12-37 (69)
64 PF10078 DUF2316: Uncharacteri 23.0 54 0.0012 25.9 1.7 37 212-267 35-71 (89)
65 PRK08898 coproporphyrinogen II 22.3 1.7E+02 0.0036 29.0 5.4 45 211-255 86-130 (394)
66 PF03874 RNA_pol_Rpb4: RNA pol 21.1 96 0.0021 24.9 2.9 34 194-227 82-116 (117)
67 PRK09057 coproporphyrinogen II 20.0 2E+02 0.0043 28.3 5.3 46 211-256 68-113 (380)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=5.2e-34 Score=294.90 Aligned_cols=239 Identities=33% Similarity=0.486 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 020702 28 ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na 107 (322)
...+-+.|..||..|+.|+++|||..|||++.||+||||+||++||||+||+.||+++. |.++.+|+.||||||.||
T Consensus 220 ~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~---Y~~~~eF~~DVRL~F~Nc 296 (640)
T KOG1474|consen 220 TVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGE---YKSAEEFAADVRLTFDNC 296 (640)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccc---cCCHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhhCcCchhHHHhhhHHHH---------------------H--Hhhh--hhhhHH
Q 020702 108 MKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEEEKRQEEEEA---------------------K--AQLD--MQLTQE 162 (322)
Q Consensus 108 ~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ee~~~~~ee~---------------------~--~~~~--~~~~~e 162 (322)
++||++|++||.||..|++.|+.+|+.+.............+.. . ...+ ...-..
T Consensus 297 m~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (640)
T KOG1474|consen 297 MTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPSSELMSE 376 (640)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCcccccccH
Confidence 99999999999999999999999999975443322111000000 0 0000 000000
Q ss_pred HhhHHHHHHHhhHHHHHHHhHHHHHH-----------------------------------HHhhhhccCCHHHHHHHHH
Q 020702 163 AVQTNKAKELRSELNEVDMQLENLRE-----------------------------------TVIQKCRKMSTEEKKNLGT 207 (322)
Q Consensus 163 ~~~~~~~~~~~~e~~~l~~~l~~~~~-----------------------------------~~~~k~r~mt~eEK~~L~~ 207 (322)
.........+......+..++..... ......+.||..|+..|..
T Consensus 377 ~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l~~ 456 (640)
T KOG1474|consen 377 EERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKLKE 456 (640)
T ss_pred HhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhccccccccccccccccccccchh
Confidence 00000011111111111111111000 0011246799999999999
Q ss_pred HhcCC-ChhhHHHHHHHH--HhcCCCCCCCCCeEEEeCCCCC-------------HHHHHHHHHHHHHHHHhcccCCC
Q 020702 208 ALTRL-SPEDLCKALEIV--AENNPSFHATAQEVDLDMDAQS-------------ELTLWRLKVFVQESLKAASRSSG 269 (322)
Q Consensus 208 ~i~~L-~~e~l~~vi~II--~~~~P~~~~~~~evElDid~L~-------------~~TL~~L~~yV~~~L~~~~~~~~ 269 (322)
.+..| ++..+..+++|+ ....+.+....+++++|++.++ ..|+|++..++...-....+...
T Consensus 457 ~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~ 534 (640)
T KOG1474|consen 457 LLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPSSNPLEIETIRETLKLSTERELELSKASS 534 (640)
T ss_pred hccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCCcccchhhhhhccccchhhHHHHHHHHhh
Confidence 99995 999999999999 5566778788999999999999 99999999888776554444444
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=9.6e-30 Score=207.43 Aligned_cols=105 Identities=36% Similarity=0.643 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 020702 28 ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na 107 (322)
+.+++.++..||..|++|+.|+||..|||+..+++||||++|++||||+||++||+++. |.++.+|.+||+|||.||
T Consensus 3 ~~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~---Y~s~~ef~~D~~li~~Na 79 (107)
T cd05497 3 TNQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNY---YWSASECIQDFNTMFTNC 79 (107)
T ss_pred cHHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999998889999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 108 MKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 108 ~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
..||+++|+++.+|..|.+.|++++.++
T Consensus 80 ~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 80 YIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998753
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=8.5e-29 Score=202.19 Aligned_cols=104 Identities=31% Similarity=0.496 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 020702 29 SLLQFFVRQARSFITQH-KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107 (322)
Q Consensus 29 ~~lq~~c~~il~~L~~~-~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na 107 (322)
++|++.|..+++.|+++ +.|++|..||++..+++|+||++|++||||+||++||+++. |.++.+|.+||+|||.||
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~---Y~s~~ef~~D~~li~~Na 78 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQ---YQDPWQYVDDVWLMFDNA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHH
Confidence 57899999999999999 99999999999998889999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 108 MKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 108 ~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
+.||+++|.++.+|..|++.|++.+..+
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 79 WLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
No 4
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.4e-28 Score=203.96 Aligned_cols=106 Identities=28% Similarity=0.454 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccc
Q 020702 29 SLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 108 (322)
Q Consensus 29 ~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~ 108 (322)
...+..|..||+.|++|+.++||..||++.. +|+||++|++||||+||++||.++. |.++.+|.+||+|||.||+
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~---Y~~~~ef~~D~~lif~Na~ 78 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGN---YDDPMEFAKDVRLIFSNSK 78 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999876 9999999999999999999999999 9999999999999999999
Q ss_pred ccCCC-CCHHHHHHHHHHHHHHHHHHhhCcCc
Q 020702 109 KYNDE-RDDVHVMAKSLLEKFEEKWLQLLPKV 139 (322)
Q Consensus 109 ~yN~~-~s~v~~~A~~L~~~Fe~~~~~i~~~~ 139 (322)
.||++ +|.|+.+|..|+..|++++.++.+.+
T Consensus 79 ~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 79 SYTPNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 99999999999999999999985544
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=7.3e-28 Score=193.05 Aligned_cols=94 Identities=30% Similarity=0.479 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCC
Q 020702 33 FFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYND 112 (322)
Q Consensus 33 ~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~ 112 (322)
++|..|++.|++++.++||..||++.. +|+||++|++||||+||++||+++. |.|+.+|.+||+|||.||.+||+
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~yN~ 77 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGS---YSSVQEFLDDMKLVFSNAEKYYE 77 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHCC
Confidence 579999999999999999999999876 9999999999999999999999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 020702 113 ERDDVHVMAKSLLEKFEEK 131 (322)
Q Consensus 113 ~~s~v~~~A~~L~~~Fe~~ 131 (322)
++|.|+.+|..|++.|.+.
T Consensus 78 ~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 78 NGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=7e-28 Score=193.51 Aligned_cols=99 Identities=46% Similarity=0.843 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccccc
Q 020702 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 110 (322)
Q Consensus 31 lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~y 110 (322)
+++.|..||+.|++++.+++|..||++...++|+|+++|++||||+||++||+++. |.++.+|.+||++||.||+.|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~---Y~s~~ef~~D~~li~~Na~~y 77 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGE---YSSPEEFAADVRLTFANAMRY 77 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999987779999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 020702 111 NDERDDVHVMAKSLLEKFEEKW 132 (322)
Q Consensus 111 N~~~s~v~~~A~~L~~~Fe~~~ 132 (322)
|+++|.++.+|..|.+.|+++|
T Consensus 78 n~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 78 NPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987
No 7
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3e-27 Score=193.27 Aligned_cols=103 Identities=36% Similarity=0.572 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCC---CCCCCCCHHHHHHHHHHHHhc
Q 020702 30 LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGK---DGTGYRNVREIYADVRLVFKN 106 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~---~~~~Y~s~~ef~~DvrLIf~N 106 (322)
..++.|..|+..|++|+.++||..||++ . +|+|+++|++||||+||++||+++ . |.++.+|.+||+|||+|
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~---Y~s~~~f~~D~~li~~N 77 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQH---YSSPEEFVADVRLMFKN 77 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHH
Confidence 5677899999999999999999999998 3 999999999999999999999984 6 99999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHhhCcC
Q 020702 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQLLPK 138 (322)
Q Consensus 107 a~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 138 (322)
|..||+++|.++.+|..|.+.|++.|..++|.
T Consensus 78 a~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 78 CYKFNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999873
No 8
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.7e-27 Score=190.92 Aligned_cols=95 Identities=34% Similarity=0.695 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCC
Q 020702 33 FFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYND 112 (322)
Q Consensus 33 ~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~ 112 (322)
.+|..||+.|++|+.+++|+.||++.. +|+|+++|++||||+||++||+++. |.|+.+|..||+|||.||+.||+
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~yN~ 77 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQ---YKTLEEFAEDVRLVFDNCETFNE 77 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHHHHCC
Confidence 479999999999999999999999886 9999999999999999999999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 020702 113 ERDDVHVMAKSLLEKFEEKW 132 (322)
Q Consensus 113 ~~s~v~~~A~~L~~~Fe~~~ 132 (322)
++|.++.+|..|++.|+++|
T Consensus 78 ~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 78 DDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999987
No 9
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.1e-27 Score=191.75 Aligned_cols=98 Identities=46% Similarity=0.850 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccc
Q 020702 32 QFFVRQARSFITQH---KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 108 (322)
Q Consensus 32 q~~c~~il~~L~~~---~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~ 108 (322)
+++|..||+.|+++ +.+++|+.||++...++|+||++|++||||+||++||.++. |.++.+|..||+|||.||+
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~---Y~s~~ef~~D~~li~~Na~ 78 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNRE---YADAQEFAADVRLMFSNCY 78 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHH
Confidence 46899999999999 89999999999987789999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHH
Q 020702 109 KYNDERDDVHVMAKSLLEKFEEKW 132 (322)
Q Consensus 109 ~yN~~~s~v~~~A~~L~~~Fe~~~ 132 (322)
.||+++|.++.+|..|++.|+++|
T Consensus 79 ~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 79 KYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999987
No 10
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3.5e-27 Score=189.68 Aligned_cols=97 Identities=29% Similarity=0.480 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccc
Q 020702 29 SLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 108 (322)
Q Consensus 29 ~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~ 108 (322)
.+|+..++.++..+. |+.++||..||++.. +||||.+|++||||+||++||+++. |.++++|.+||+|||.||.
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv~LI~~Na~ 75 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKA---YGSTDAFLADAKWILHNAI 75 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence 478899999999999 999999999999976 9999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHH
Q 020702 109 KYNDERDDVHVMAKSLLEKFEEK 131 (322)
Q Consensus 109 ~yN~~~s~v~~~A~~L~~~Fe~~ 131 (322)
.||+++|.++.+|..|.+.|+..
T Consensus 76 ~YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 76 IYNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred HHCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999998764
No 11
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6.7e-27 Score=193.04 Aligned_cols=101 Identities=36% Similarity=0.585 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 30 LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
.....|..|++.|+.++.+++|..||+... +|+||++|++||||+||++||.++. |.|+.+|.+||+|||.||+.
T Consensus 12 ~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~---Y~s~~~f~~Dv~LI~~Na~~ 86 (115)
T cd05504 12 LNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGE---YKLAEEFLSDIQLVFSNCFL 86 (115)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHHH
Confidence 455679999999999999999999999876 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
||+++|.++.+|..|++.|++++.++
T Consensus 87 yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 87 YNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999886
No 12
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6.8e-27 Score=189.75 Aligned_cols=100 Identities=29% Similarity=0.429 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 30 LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
-++..|..|+..|++|+.++||..||++.. +|+|+++|++||||+||++||+++. |.++.+|.+||+|||.||..
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~ 77 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGT---IRSTAEFQRDVLLMFQNAIM 77 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999865 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHh
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQ 134 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~ 134 (322)
||+++|.|+.+|..|++.|.+.+..
T Consensus 78 yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 78 YNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999888764
No 13
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6.6e-27 Score=189.44 Aligned_cols=100 Identities=32% Similarity=0.492 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccc
Q 020702 29 SLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 108 (322)
Q Consensus 29 ~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~ 108 (322)
....++|..|++.|++++.+++|..||++...++|+|+++|++||||+||++||.++. |.++.+|.+||++||.||+
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNV---YTSVEEFTADFNLMVDNCL 79 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999988889999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHH
Q 020702 109 KYNDERDDVHVMAKSLLEKFEEK 131 (322)
Q Consensus 109 ~yN~~~s~v~~~A~~L~~~Fe~~ 131 (322)
.||+++|.++.+|..|++.|++.
T Consensus 80 ~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 80 TFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999975
No 14
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=5.9e-27 Score=189.32 Aligned_cols=97 Identities=37% Similarity=0.760 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHc---CCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 33 FFVRQARSFITQ---HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 33 ~~c~~il~~L~~---~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
+.|..||+.|++ ++.++||+.||++...++|+||++|++||||++|++||+++. |.++.+|.+||+|||.||+.
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~---Y~s~~ef~~D~~li~~N~~~ 79 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQ---YQSAKEFERDVRLIFKNCYT 79 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHH
Confidence 579999999999 467999999999986669999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKW 132 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~ 132 (322)
||+++|.++.+|..|++.|+++|
T Consensus 80 yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 80 FNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999987
No 15
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.4e-26 Score=186.76 Aligned_cols=99 Identities=36% Similarity=0.607 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccccc
Q 020702 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 110 (322)
Q Consensus 31 lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~y 110 (322)
++.+|..|++.|++|+.+++|..||++.. +|+|+++|++||||+||++||.++. |.|+.+|..||+|||.||+.|
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv~li~~Na~~y 76 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGY---YVTLEEFVADLKLIFDNCRLY 76 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999987 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 020702 111 NDERDDVHVMAKSLLEKFEEKWLQ 134 (322)
Q Consensus 111 N~~~s~v~~~A~~L~~~Fe~~~~~ 134 (322)
|+++|.++.+|..|++.|++.+++
T Consensus 77 N~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 77 NGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998875
No 16
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.9e-26 Score=184.77 Aligned_cols=96 Identities=20% Similarity=0.316 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCC
Q 020702 33 FFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYND 112 (322)
Q Consensus 33 ~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~ 112 (322)
+.|+.|+..|.+++.+++|..++ . ++||||++|++||||+||++||.++. |.++.+|.+||+|||.||+.||+
T Consensus 5 ~~ce~il~~l~~~~~s~~f~~~p--~--~~pdY~~iIk~PMDL~tI~~kL~~~~---Y~s~~ef~~D~~Lif~N~~~yN~ 77 (102)
T cd05501 5 LKCEFLLLKVYCMSKSGFFISKP--Y--YIRDYCQGIKEPMWLNKVKERLNERV---YHTVEGFVRDMRLIFHNHKLFYK 77 (102)
T ss_pred HHHHHHHHHHHhCcccccccCCC--C--CCCchHHHcCCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHcC
Confidence 45999999999999999997632 3 38999999999999999999999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 113 ERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 113 ~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
++ .++.+|..|++.|+++|..++
T Consensus 78 ~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 78 DD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHh
Confidence 99 999999999999999999875
No 17
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.9e-26 Score=188.30 Aligned_cols=103 Identities=23% Similarity=0.391 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 020702 28 ASLLQFFVRQARSFITQH-KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~-~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~N 106 (322)
...++..|..|+..|++| +.+++|..||++.. +|+||++|++||||+||++||.++. |.++.+|.+||+|||.|
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~Li~~N 79 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQ---YKSKAEFVDDLNLIWKN 79 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHH
Confidence 467889999999999999 89999999999986 9999999999999999999999999 99999999999999999
Q ss_pred ccccCCCCC-HHHHHHHHHHHHHHHHHHhh
Q 020702 107 AMKYNDERD-DVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 107 a~~yN~~~s-~v~~~A~~L~~~Fe~~~~~i 135 (322)
|+.||+++| .++.+|..|++.|+..+..+
T Consensus 80 ~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 80 CLLYNSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 999999866 67899999999999998876
No 18
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.93 E-value=3.9e-26 Score=187.59 Aligned_cols=105 Identities=30% Similarity=0.491 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccc
Q 020702 29 SLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 108 (322)
Q Consensus 29 ~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~ 108 (322)
++|+.+|..|++.|+.|+.+++|..||++.. +|+||++|++||||+||++||+++. |.|+.+|.+||+|||.||.
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~---Y~s~~ef~~Dv~li~~Na~ 76 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQ---YLTAKDFLKDIDLIVTNAL 76 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCC---cCCHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999987 9999999999999999999999999 9999999999999999999
Q ss_pred ccCCC----CCHHHHHHHHHHHHHHHHHHhhCcC
Q 020702 109 KYNDE----RDDVHVMAKSLLEKFEEKWLQLLPK 138 (322)
Q Consensus 109 ~yN~~----~s~v~~~A~~L~~~Fe~~~~~i~~~ 138 (322)
.||++ ||.++.+|..|++.|.+++.+..|.
T Consensus 77 ~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 77 EYNPDRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred HHCCCCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999 4799999999999999999988664
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=9.3e-26 Score=181.14 Aligned_cols=92 Identities=34% Similarity=0.422 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccccc
Q 020702 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 110 (322)
Q Consensus 31 lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~y 110 (322)
|...|..|++.|+.++.+++|..||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+|||.||++|
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~y 76 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNND---YQSIEEFKDDFKLMCENAMKY 76 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999876 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 020702 111 NDERDDVHVMAKSLLEK 127 (322)
Q Consensus 111 N~~~s~v~~~A~~L~~~ 127 (322)
|+++|.++.+|..|...
T Consensus 77 N~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 77 NKPDTIYYKAAKKLLHS 93 (98)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998654
No 20
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=9.2e-26 Score=185.45 Aligned_cols=100 Identities=30% Similarity=0.553 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccccc
Q 020702 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 110 (322)
Q Consensus 31 lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~y 110 (322)
|+..++.|++.|++++.+++|..||++.. +|+||++|++||||+||++||.++. |+++.+|.+||+|||.||..|
T Consensus 1 ~~~~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~---Y~s~~ef~~Dv~li~~Na~~y 75 (112)
T cd05511 1 LSFILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHK---YQSREEFLEDIELIVDNSVLY 75 (112)
T ss_pred CHHHHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999987 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 111 NDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 111 N~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|+++|.++.+|..|...|+..+..+
T Consensus 76 N~~~s~i~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 76 NGPDSVYTKKAKEMLELAEELLAER 100 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887
No 21
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.3e-25 Score=183.17 Aligned_cols=100 Identities=26% Similarity=0.382 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 31 LQFFVRQARSFITQHKW------AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 31 lq~~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
|++.|..|++.|..+.. ++||..||+... +|+||++|++||||+||++||.++. |.++.+|..||+|||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~---Y~s~~ef~~D~~li~ 76 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHK---YRSLEDLEKDVMLLC 76 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCC---CCCHHHHHHHHHHHH
Confidence 67889999999998876 899999998876 9999999999999999999999999 999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 105 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 105 ~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
.||+.||++||.|+.+|..|++.|++.+.++
T Consensus 77 ~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 77 QNAQTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988753
No 22
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.5e-25 Score=178.73 Aligned_cols=91 Identities=29% Similarity=0.525 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccC
Q 020702 32 QFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 111 (322)
Q Consensus 32 q~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN 111 (322)
.-.|+.+++.|+.|+.+++|..||+... +|+|+++|++||||+||++||.++. |.++.+|..||+|||.||+.||
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~yN 77 (98)
T cd05512 3 EVLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQR---YRTLEDFEADFNLIINNCLAYN 77 (98)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999887 9999999999999999999999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 020702 112 DERDDVHVMAKSLLEK 127 (322)
Q Consensus 112 ~~~s~v~~~A~~L~~~ 127 (322)
+++|.+|.+|..|++.
T Consensus 78 ~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 78 AKDTIFYRAAVRLRDQ 93 (98)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=6.3e-25 Score=177.83 Aligned_cols=97 Identities=26% Similarity=0.452 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHH------cCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 31 LQFFVRQARSFIT------QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 31 lq~~c~~il~~L~------~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
|++.|..|++.|+ .++.+++|..||+... +|+||++|++||||+||++||+++. |.|+.+|..||+|||
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~---Y~s~~~f~~D~~li~ 75 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRA---YKSLEEFLEDFHLMF 75 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHH
Confidence 5788999999999 4566999999998877 9999999999999999999999999 999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHH
Q 020702 105 KNAMKYNDERDDVHVMAKSLLEKFEEKW 132 (322)
Q Consensus 105 ~Na~~yN~~~s~v~~~A~~L~~~Fe~~~ 132 (322)
.||..||+++|.++.+|..|++.|++++
T Consensus 76 ~Na~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 76 ANARTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998763
No 24
>smart00297 BROMO bromo domain.
Probab=99.90 E-value=8.4e-24 Score=171.02 Aligned_cols=102 Identities=40% Similarity=0.680 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 020702 28 ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na 107 (322)
...++..|..|+..+.+|+.+++|..||+... +|+|+++|++||||++|++||+++. |.++.+|.+||++||.||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~---Y~s~~ef~~D~~li~~Na 79 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGK---YSSVEEFVADVQLMFSNA 79 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999887 8999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHh
Q 020702 108 MKYNDERDDVHVMAKSLLEKFEEKWLQ 134 (322)
Q Consensus 108 ~~yN~~~s~v~~~A~~L~~~Fe~~~~~ 134 (322)
+.||+++|.++.+|..|.+.|++.|.+
T Consensus 80 ~~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 80 KTYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999875
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=7e-24 Score=172.36 Aligned_cols=96 Identities=27% Similarity=0.469 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHc------CCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 020702 32 QFFVRQARSFITQ------HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 105 (322)
Q Consensus 32 q~~c~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~ 105 (322)
++.|..|++.|.. ++.+++|..||+... +|+||++|++||||+||++||.++. |.++.+|..||+|||.
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~l~~~ 76 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQ---YQSLDDMVSDFVLMFD 76 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHH
Confidence 4568888888876 466899999998877 9999999999999999999999999 9999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHH
Q 020702 106 NAMKYNDERDDVHVMAKSLLEKFEEKW 132 (322)
Q Consensus 106 Na~~yN~~~s~v~~~A~~L~~~Fe~~~ 132 (322)
||..||+++|.++.+|..|++.|.+..
T Consensus 77 Na~~yN~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 77 NACKYNEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 26
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=4.4e-24 Score=172.97 Aligned_cols=95 Identities=23% Similarity=0.359 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 31 LQFFVRQARSFITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 31 lq~~c~~il~~L~~~------~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
+|++|..|++.|+.+ +.+++|..+++... +|+||++|++||||+||++||.++. |.++.+|..||+|||
T Consensus 1 ~~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~lm~ 75 (103)
T cd05517 1 LKQILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGY---YKSIEDMEKDLDLMV 75 (103)
T ss_pred ChHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCC---CCCHHHHHHHHHHHH
Confidence 367899999999885 45799999988877 9999999999999999999999999 999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHH
Q 020702 105 KNAMKYNDERDDVHVMAKSLLEKFEE 130 (322)
Q Consensus 105 ~Na~~yN~~~s~v~~~A~~L~~~Fe~ 130 (322)
.||..||+++|.++.+|..|++.|+.
T Consensus 76 ~Na~~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 76 KNAKTFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999975
No 27
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=8.6e-24 Score=173.99 Aligned_cols=100 Identities=24% Similarity=0.351 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 020702 32 QFFVRQARSFITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 105 (322)
Q Consensus 32 q~~c~~il~~L~~~------~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~ 105 (322)
.+.|..|++.|+++ +.+.+|..+++... +|+||++|++||||+||++||.++. |.++.+|.+||+|||.
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~---Y~s~~~f~~D~~lm~~ 78 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEE---YDDVDDLTADFELLIN 78 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCC---CCCHHHHHHHHHHHHH
Confidence 46799999999964 45678999888665 9999999999999999999999999 9999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 106 NAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 106 Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
||..||+++|.++.+|..|++.|++.+.++.
T Consensus 79 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 79 NAKAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988874
No 28
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.5e-23 Score=176.23 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHH---cCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 28 ASLLQFFVRQARSFIT---QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~---~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
...++..|..++..|+ +++++++|..||++.. ++|+||++|++||||+||++||.++. |+++++|..||+|||
T Consensus 22 ~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv~Li~ 97 (128)
T cd05529 22 RDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRY---YRSLEALRHDVRLIL 97 (128)
T ss_pred CHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Confidence 5567778889999999 9999999999999882 39999999999999999999999999 999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHH
Q 020702 105 KNAMKYNDERDDVHVMAKSLLEKFEEKWL 133 (322)
Q Consensus 105 ~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~ 133 (322)
.||+.||+++|.++.+|..|.+.|+..+.
T Consensus 98 ~Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 98 SNAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 29
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=1.2e-23 Score=170.34 Aligned_cols=91 Identities=27% Similarity=0.450 Sum_probs=83.0
Q ss_pred HHHHHHHHcC------CCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 36 RQARSFITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 36 ~~il~~L~~~------~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
..|++.|+.+ +.++||+.||+... +|+||++|++||||+||++||+++. |.++.+|.+||+|||.||+.
T Consensus 6 ~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05520 6 WQLYDTIRNARNNQGQLLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGE---YETLEELEADLNLMFENAKR 80 (103)
T ss_pred HHHHHHHHhhcCCCCCCccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHHH
Confidence 4455555553 57999999999876 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 020702 110 YNDERDDVHVMAKSLLEKFEEK 131 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~ 131 (322)
||+++|.++.+|..|++.|+++
T Consensus 81 yN~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 81 YNVPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.6e-23 Score=169.29 Aligned_cols=96 Identities=25% Similarity=0.354 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 31 LQFFVRQARSFITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 31 lq~~c~~il~~L~~~------~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
|...|..|++.|... +.++||+.+++... +|+||++|++||||+||++||.++. |.++.+|..||.|||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~---Y~s~~ef~~D~~l~f 77 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGY---YKTPEAFDSDMLKVF 77 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCC---CCCHHHHHHHHHHHH
Confidence 455667777777663 45799999988876 9999999999999999999999999 999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHH
Q 020702 105 KNAMKYNDERDDVHVMAKSLLEKFEEK 131 (322)
Q Consensus 105 ~Na~~yN~~~s~v~~~A~~L~~~Fe~~ 131 (322)
.||..||+++|.++.+|..|++.|++.
T Consensus 78 ~Na~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 78 RNAEKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999864
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.3e-23 Score=167.84 Aligned_cols=94 Identities=27% Similarity=0.436 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHc------CCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 020702 33 FFVRQARSFITQ------HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106 (322)
Q Consensus 33 ~~c~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~N 106 (322)
+.|..|++.|.. ++.+.+|+.||+... +||||++|++||||+||+.||.++. |.++.+|.+||+|||.|
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~---Y~s~~ef~~D~~li~~N 77 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDK---YATEEELMDDFKLMFRN 77 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCC---CCCHHHHHHHHHHHHHH
Confidence 345666666665 467899999999877 9999999999999999999999999 99999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHH
Q 020702 107 AMKYNDERDDVHVMAKSLLEKFEEK 131 (322)
Q Consensus 107 a~~yN~~~s~v~~~A~~L~~~Fe~~ 131 (322)
|..||+++|.|+.+|..|++.|+++
T Consensus 78 a~~yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 78 ARHYNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999864
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.6e-22 Score=162.87 Aligned_cols=94 Identities=20% Similarity=0.302 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHc------CCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 020702 33 FFVRQARSFITQ------HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106 (322)
Q Consensus 33 ~~c~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~N 106 (322)
..+..|++.|++ ++.+++|+.+|+... +|+||++|++||||+||++||..+. |.++.+|..||+|||.|
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~---Y~s~~~f~~D~~li~~N 78 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRK---YKSFDQFLNDLNLMFEN 78 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHHH
Confidence 345667777766 578999999998876 9999999999999999999999999 99999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHH
Q 020702 107 AMKYNDERDDVHVMAKSLLEKFEEK 131 (322)
Q Consensus 107 a~~yN~~~s~v~~~A~~L~~~Fe~~ 131 (322)
|..||+++|.++.+|..|++.|+..
T Consensus 79 a~~yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 79 AKLYNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999863
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.87 E-value=3.2e-22 Score=157.42 Aligned_cols=96 Identities=39% Similarity=0.589 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 32 QFFVRQARSFITQH--KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 32 q~~c~~il~~L~~~--~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
...|..|++.|..+ +.+++|..||++.. +|+|+++|++||||++|+.||.++. |.++.+|..||++||.||+.
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~---Y~s~~~f~~D~~li~~Na~~ 76 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGE---YKSLEEFEADVRLIFSNAKT 76 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 45789999999999 99999999999866 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKW 132 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~ 132 (322)
||+++|.++.+|..|...|++.|
T Consensus 77 ~n~~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 77 YNGPGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred HCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998764
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.87 E-value=2.5e-22 Score=155.51 Aligned_cols=84 Identities=38% Similarity=0.679 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCC
Q 020702 35 VRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDER 114 (322)
Q Consensus 35 c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~ 114 (322)
|..|++.|++|+.+++|..||++.. +|+|+++|+.||||++|+.||+++. |.++.+|..||++||.||+.||+++
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~---Y~s~~~f~~Dv~~i~~Na~~yn~~~ 75 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGK---YKSIEEFEADVRLIFQNARRYNPPD 75 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTS---SSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccc---hhhHHHHHHHHHHHHHHHHHHCCCc
Confidence 8999999999999999999997776 9999999999999999999999999 9999999999999999999999999
Q ss_pred CHHHHHHHH
Q 020702 115 DDVHVMAKS 123 (322)
Q Consensus 115 s~v~~~A~~ 123 (322)
|.++.+|.+
T Consensus 76 s~~~~~A~~ 84 (84)
T PF00439_consen 76 SPIYKAAEK 84 (84)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHhcC
Confidence 999999964
No 35
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.7e-21 Score=159.06 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=87.7
Q ss_pred HHHHHHHHHHc-CCCCCCCCCCCCc---ccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 34 FVRQARSFITQ-HKWAWPFMHPVDV---EGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 34 ~c~~il~~L~~-~~~a~~F~~PVd~---~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
.+..++..+.+ -|.++||..||.+ ...++|+|+++|++||||+||++||+++. |++++||.+||+|||+||..
T Consensus 4 ~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv~LI~~N~~~ 80 (109)
T cd05492 4 LLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEK---YTSLEEFKADALLLLHNTAI 80 (109)
T ss_pred hHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 45677788877 6778999999974 33359999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
||+++|.++.+|..|.+.....+..+
T Consensus 81 yNg~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 81 FHGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777666554
No 36
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.3e-21 Score=159.18 Aligned_cols=95 Identities=21% Similarity=0.222 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 31 LQFFVRQARSFITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 31 lq~~c~~il~~L~~~------~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
|.+.|..|++.|+.. +.+.+|..+++... +|+||++|++||||+||++||.+ |.++.+|.+||+|||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~-----Y~s~~ef~~D~~li~ 74 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH-----YTNAQEFVNDLAQIP 74 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 567788899988874 44679998877766 99999999999999999999985 999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHH
Q 020702 105 KNAMKYNDERDDVHVMAKSLLEKFEEKW 132 (322)
Q Consensus 105 ~Na~~yN~~~s~v~~~A~~L~~~Fe~~~ 132 (322)
.||..||+++|.++.+|..|++.|.+++
T Consensus 75 ~Na~~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 75 WNARLYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999875
No 37
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.72 E-value=4.9e-18 Score=186.87 Aligned_cols=98 Identities=34% Similarity=0.674 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCC
Q 020702 35 VRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDER 114 (322)
Q Consensus 35 c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~ 114 (322)
|..|+..|+.|..||||++||++.. +|+||+||++||||+||+.|+..+. |.++.+|..||.|||+||..||.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~---Y~~~eef~~Di~lvf~Nc~~yN~~- 1379 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGI---YPSPEEFATDIELVFDNCETYNED- 1379 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhccc---CCCHHHHHHHHHHHHHHHHHhccc-
Confidence 8999999999999999999999998 9999999999999999999999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCcC
Q 020702 115 DDVHVMAKSLLEKFEEKWLQLLPK 138 (322)
Q Consensus 115 s~v~~~A~~L~~~Fe~~~~~i~~~ 138 (322)
|.|+.++..|..+|++.|...+|.
T Consensus 1380 s~i~~ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1380 SEIGRAGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred hhhhhhcchHHHHHHHHHHhhcCC
Confidence 999999999999999999887653
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.71 E-value=2.5e-17 Score=134.46 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 020702 30 LLQFFVRQARSFITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 103 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLI 103 (322)
.+|..+..|+..++.|. ++.+|.+.+. . .|+|+.+|+.||||++|++||.+|. |.++++|..||.+|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~--~~~~~~~ik~Pi~l~~Ik~ki~~~~---Y~~ld~~~~D~~lm 75 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--L--AVDGVGPKKIPLTLDIIKRNVDKGR---YRRLDKFQEDMFEV 75 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--c--ccCchhhhcCCccHHHHHHHHHcCC---cCcHHHHHHHHHHH
Confidence 57788899999999875 4788888665 2 5788999999999999999999999 99999999999999
Q ss_pred HhcccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 104 FKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 104 f~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|.||.+||.+||.+|.+|..|+..|...-.++
T Consensus 76 f~NAr~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 76 LERARRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHHHHHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876654
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.69 E-value=5.6e-17 Score=158.71 Aligned_cols=110 Identities=27% Similarity=0.384 Sum_probs=93.5
Q ss_pred cccHHHHHHHHHHHHHHHHc------CCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHH
Q 020702 25 NLSASLLQFFVRQARSFITQ------HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYA 98 (322)
Q Consensus 25 ~~~~~~lq~~c~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~ 98 (322)
......+.+.|..++..+.. +..+++|..+|+... +|+||.+|+.||||++|+++|.++. |+++++|..
T Consensus 137 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~---Y~s~eef~~ 211 (371)
T COG5076 137 KIEDELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGR---YKSFEEFVS 211 (371)
T ss_pred cccchhHHHHHHHHHHHHHHhhcccccccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhh---hhhHHHHHH
Confidence 33344444444544444433 467899999998887 9999999999999999999999999 999999999
Q ss_pred HHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHhhCcCc
Q 020702 99 DVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKV 139 (322)
Q Consensus 99 DvrLIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~ 139 (322)
|+.|||.||..||+++|.|+.+|..|+..|...+..+.+..
T Consensus 212 D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~ 252 (371)
T COG5076 212 DLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEM 252 (371)
T ss_pred HHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999885443
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.44 E-value=9e-14 Score=143.45 Aligned_cols=101 Identities=33% Similarity=0.521 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 30 LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
.+......++..|..|..+|||..||+... +|+||.+|++||||.|++.+|..+. |..+..|..|+..||.||+.
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdyy~~I~~pmDl~tM~~~l~~~~---y~~~~~f~ad~~~vf~ncr~ 680 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDYYDVIKHPMDLRTMQNRLKDNQ---YTEVELFMADVVRVFANCRM 680 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCcccccc--CCcHHHHhcccccHHHHhhhccccc---hhhHHHHHHHHHHHHhhhhc
Confidence 455677899999999999999999999988 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
||++++..+..|-.|...|-.++...
T Consensus 681 yn~~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 681 YNGSDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred cCCccchheecccchhhhhcchhhhh
Confidence 99999999999999999998887765
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.38 E-value=3.1e-13 Score=111.41 Aligned_cols=81 Identities=22% Similarity=0.177 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHhccc
Q 020702 33 FFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKD----GTGYRNVREIYADVRLVFKNAM 108 (322)
Q Consensus 33 ~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~----~~~Y~s~~ef~~DvrLIf~Na~ 108 (322)
..|..++..++.++.+|||..||++...++|+|+++|++||||+||+++|.+.. +..|..-..+..++..+|.||.
T Consensus 6 ~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (114)
T cd05494 6 ERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRS 85 (114)
T ss_pred HHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccC
Confidence 346677778888889999999999977789999999999999999999999862 1225555667777777888877
Q ss_pred ccCCC
Q 020702 109 KYNDE 113 (322)
Q Consensus 109 ~yN~~ 113 (322)
.++..
T Consensus 86 ~~~~~ 90 (114)
T cd05494 86 PSNIY 90 (114)
T ss_pred ccccc
Confidence 77653
No 42
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.98 E-value=2.8e-10 Score=93.65 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=39.3
Q ss_pred CCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCC
Q 020702 71 KPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDER 114 (322)
Q Consensus 71 ~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~ 114 (322)
.||||+||++||.+|. |.++.+|.+||+|||.||..||+++
T Consensus 63 y~MDL~tIe~RL~ng~---Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGY---YATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 5899999999999999 9999999999999999999999874
No 43
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.97 E-value=7.1e-10 Score=119.19 Aligned_cols=100 Identities=27% Similarity=0.424 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccccc
Q 020702 31 LQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 110 (322)
Q Consensus 31 lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~y 110 (322)
....++.++..+....-...|..|||..+ +|||.++|++||||.|++.+++++. |.++++|.+|+.+|..||+.|
T Consensus 566 ~~kLl~~~l~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~---y~tle~ieed~~l~~~nc~~y 640 (1051)
T KOG0955|consen 566 FKKLLQKSLDKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGA---YSTLEPIEEDVNLIVSNCMEY 640 (1051)
T ss_pred HHHHHHHHHHHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccc---hhhhhHHHHhHhHhHhHHHHh
Confidence 45567788999999999999999999998 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 111 NDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 111 N~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|..+...|..|..+++.-...+.+.
T Consensus 641 n~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 641 NAKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred hccCeehHhhhHHHHhhhhhHHHhc
Confidence 9999999999999999988877766
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.95 E-value=8.1e-10 Score=118.94 Aligned_cols=95 Identities=27% Similarity=0.492 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCC
Q 020702 33 FFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYND 112 (322)
Q Consensus 33 ~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~ 112 (322)
..+-.|+.+++.-+.+|+|..||+... .|+||.+|++||||.+|.+++..+. |.+.++|..||++|+.||..||+
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~---y~s~~e~l~dv~~i~~n~~~~ng 1459 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHK---YDSRSEFLDDVNLIYVNSVEYNG 1459 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccc---cccHHHHhhhhHhhcccceeecC
Confidence 455677788888899999999999998 9999999999999999999999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 020702 113 ERDDVHVMAKSLLEKFEEKW 132 (322)
Q Consensus 113 ~~s~v~~~A~~L~~~Fe~~~ 132 (322)
+.+....-|+.+-+.-...+
T Consensus 1460 ~e~~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1460 AESAYTKKARKIGEVGLANL 1479 (1563)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999888886655544443
No 45
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.66 E-value=1.6e-08 Score=104.96 Aligned_cols=81 Identities=27% Similarity=0.481 Sum_probs=70.5
Q ss_pred cCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHH
Q 020702 44 QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 123 (322)
Q Consensus 44 ~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s~v~~~A~~ 123 (322)
.+..+++|..||+... .|+||.+|+.||||+|+.+++..+. |.+.++|+.|+.+||.||.+||.+.+.....-..
T Consensus 300 ~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~---y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~v 374 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGP---YCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAV 374 (720)
T ss_pred ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhcccc---ccchhHHHHHHHHHHhcchhhccccchhhhhhhh
Confidence 3788999999999988 9999999999999999999999999 9999999999999999999999976655554444
Q ss_pred HHHHHH
Q 020702 124 LLEKFE 129 (322)
Q Consensus 124 L~~~Fe 129 (322)
+.+.+-
T Consensus 375 v~~~~s 380 (720)
T KOG1472|consen 375 IMNSKS 380 (720)
T ss_pred hhccCc
Confidence 444443
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.63 E-value=4.8e-08 Score=103.50 Aligned_cols=99 Identities=25% Similarity=0.384 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHc------CCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 020702 33 FFVRQARSFITQ------HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106 (322)
Q Consensus 33 ~~c~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~N 106 (322)
..|..|+..... ++.+..|...+.... +|+||.+|+.|+++..|.+++.++. |.+..+...|+.++|.|
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~n 1101 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHK---YNSLKELEKDFMLLFNN 1101 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccc---cchHHHHHHHHHhhcch
Confidence 456777777764 445788998877777 9999999999999999999999999 99999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 107 a~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
|..||..||.||..|..|+..|......+.
T Consensus 1102 a~~~~~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1102 ARTYNEEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred hhhhccCCceechhHHHHHHHHhhhHHHHh
Confidence 999999999999999999999998887773
No 47
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.58 E-value=7.7e-08 Score=98.63 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHcCC------CCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 020702 28 ASLLQFFVRQARSFITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 101 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dvr 101 (322)
+..++..+..||..+..+. ....|.+-.+... .|+||.+|..||.|..|++|+..+. |.+.+.|..|+.
T Consensus 50 ~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~---y~~~~~f~~D~~ 124 (629)
T KOG1827|consen 50 DPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGR---YKRLSFFQLDFL 124 (629)
T ss_pred ChHHHHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcc---cccHHHHHHHHH
Confidence 3445555677777776643 4677888878777 8999999999999999999999999 999999999999
Q ss_pred HHHhcccccCCCCCHHHHHHHHHHHHHHHHHH
Q 020702 102 LVFKNAMKYNDERDDVHVMAKSLLEKFEEKWL 133 (322)
Q Consensus 102 LIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~ 133 (322)
+|+.||..||.++|.++.++..|...|.....
T Consensus 125 lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 125 LMTENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 99999999999999999999999999987553
No 48
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.56 E-value=8.8e-08 Score=103.67 Aligned_cols=99 Identities=25% Similarity=0.390 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 30 LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
.++-.+..|+.++...+...+|..||+... +++||.||+.||||.++++.+.... |.+-++|..|+.+|++|..+
T Consensus 1261 ~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~---y~~r~~fle~~~~~~~ns~~ 1335 (1563)
T KOG0008|consen 1261 SLSSILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRL---YESREHFLEELPLIVSNSTK 1335 (1563)
T ss_pred ecccchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHH---HHHHHHHHHHhHHHhhchhh
Confidence 345567889999999999999999999988 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWL 133 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~ 133 (322)
||++.+.+...+..+....-..|.
T Consensus 1336 yng~~~~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1336 YNGPLASLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred hcCchHHHHHHHHHHHHHHHHhhc
Confidence 999999999888876665444443
No 49
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.55 E-value=1.9e-08 Score=105.10 Aligned_cols=91 Identities=40% Similarity=0.698 Sum_probs=84.5
Q ss_pred HHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHH
Q 020702 42 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMA 121 (322)
Q Consensus 42 L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s~v~~~A 121 (322)
+-.|..+|+|..||+.+.+++|+||.+|++|||++||..+++++. |.+..+..+|+..+|.||..||.++.+|..++
T Consensus 4 ~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~---~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~ 80 (640)
T KOG1474|consen 4 ARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNY---YFSASECIADFKTKFSNCYLFNDSGDDVVRMK 80 (640)
T ss_pred cccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCc---cccHhhhhhhccccccchhcccCCccchhhcc
Confidence 346889999999999999999999999999999999999999866 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 020702 122 KSLLEKFEEKWLQL 135 (322)
Q Consensus 122 ~~L~~~Fe~~~~~i 135 (322)
..+...|.+.....
T Consensus 81 ~~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 81 QSLEKLFPKKLRSM 94 (640)
T ss_pred ccchhhcccccccc
Confidence 99999997665554
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.93 E-value=1.9e-06 Score=83.45 Aligned_cols=87 Identities=25% Similarity=0.251 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCC
Q 020702 36 RQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERD 115 (322)
Q Consensus 36 ~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s 115 (322)
..++..+-+...-..|.-||.+.. .|+|.++|+.|||+.|++.+++-+. |.+..+|.-|.+++..||..||...+
T Consensus 25 ehhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~---yl~L~~m~~d~kl~~~na~~yn~~~T 99 (418)
T KOG1828|consen 25 EHHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTR---YLVLSQMEFDRKLPDGNATLYNLHPT 99 (418)
T ss_pred HHHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCcc---ceechhhhhhhcccccchhhhhcCCc
Confidence 445555555666677778888877 8999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 020702 116 DVHVMAKSLLEK 127 (322)
Q Consensus 116 ~v~~~A~~L~~~ 127 (322)
.++..|+.|..+
T Consensus 100 v~~~aaKrL~~v 111 (418)
T KOG1828|consen 100 VPIVAAKRLCPV 111 (418)
T ss_pred cccccccccchh
Confidence 999999988765
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.69 E-value=3.1e-05 Score=75.09 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=71.5
Q ss_pred HHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCHHH
Q 020702 39 RSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVH 118 (322)
Q Consensus 39 l~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s~v~ 118 (322)
..++........|..|+-... .|.|.-+|++|+|++|.+.+..++. |.| .+|..|..+|+.||++||.+....|
T Consensus 217 ~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~and---y~S-~~f~~D~kl~~l~amT~gehsk~yy 290 (418)
T KOG1828|consen 217 EDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSAND---YES-LSFTQDRKLIALKAVTNGEHSKSYY 290 (418)
T ss_pred HHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhh---hhh-hhhhcccchhhHHHHhcCCcchHHH
Confidence 334444556677777877766 8999999999999999999999999 999 9999999999999999999999999
Q ss_pred HHHHHHHH
Q 020702 119 VMAKSLLE 126 (322)
Q Consensus 119 ~~A~~L~~ 126 (322)
.+|..+.-
T Consensus 291 elank~lh 298 (418)
T KOG1828|consen 291 ELANKQLH 298 (418)
T ss_pred HHHHhhhh
Confidence 99987655
No 52
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.81 E-value=0.0013 Score=55.52 Aligned_cols=67 Identities=13% Similarity=0.257 Sum_probs=58.7
Q ss_pred CCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHhhCcCchh
Q 020702 72 PMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVME 141 (322)
Q Consensus 72 PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ 141 (322)
|.||..|++||+.|. |+++.+|..||-.|+.-++.-.+....+......+..+|-+.+..++++...
T Consensus 59 p~dL~~V~kkl~~G~---Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~ 125 (131)
T cd05493 59 PLDLEAVGKKLEAGF---YTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNS 125 (131)
T ss_pred cccHHHHHHHHhccc---eehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccccc
Confidence 899999999999999 9999999999999999998887766666666777778899999999887643
No 53
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.78 E-value=0.00044 Score=68.02 Aligned_cols=90 Identities=34% Similarity=0.485 Sum_probs=80.0
Q ss_pred HHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCHHH
Q 020702 39 RSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVH 118 (322)
Q Consensus 39 l~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s~v~ 118 (322)
+.....+..+|+|..|+.... .|+|++.|..+|+++|.+.++..+. |....+|..|.++++.||..||+.....+
T Consensus 272 i~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (371)
T COG5076 272 ITNSQAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNY---YRPEETFVRDAKLFFDNCVMYNGEVTDYY 346 (371)
T ss_pred ccccccccccccccccCCccc--ccchhhhhhcccccccchhhhhccc---CCCccccccccchhhhcccccchhhhhhh
Confidence 333455677999999999888 9999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020702 119 VMAKSLLEKFEEKWL 133 (322)
Q Consensus 119 ~~A~~L~~~Fe~~~~ 133 (322)
..+..+...|.....
T Consensus 347 ~~~~~~~~~~~~~~~ 361 (371)
T COG5076 347 KNANVLEDFVIKKTR 361 (371)
T ss_pred hhccchhhhHhhhhh
Confidence 888888777766544
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=90.68 E-value=0.23 Score=53.18 Aligned_cols=61 Identities=18% Similarity=0.377 Sum_probs=52.7
Q ss_pred ccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHH
Q 020702 68 VIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 131 (322)
Q Consensus 68 iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~ 131 (322)
--.-|..|+.|+.+|++.. |++.+.|..||-.|.+||.+|.+-+..+...+..|...|..-
T Consensus 1049 ~fpvpls~evi~~rlEn~y---Yrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1049 RFPVPLSLEVIRSRLENNY---YRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCCcccHHHHHHHHHhhh---hhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 3556899999999999999 999999999999999999999998887777777777666543
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=89.72 E-value=0.23 Score=54.67 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCccc---CCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHH--HHHHHHhcccccCCCC
Q 020702 46 KWAWPFMHPVDVEG---LGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYA--DVRLVFKNAMKYNDER 114 (322)
Q Consensus 46 ~~a~~F~~PVd~~~---~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~--DvrLIf~Na~~yN~~~ 114 (322)
..+..|..|+++.. +++++|-.+|++|||+...-.+++.+. |.++.+|.. +++|||.+++.||+..
T Consensus 531 R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~---~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 531 RSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHL---KLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHh---HHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 34677888887432 225689999999999999999999999 999999999 9999999999999975
No 56
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=74.47 E-value=9.2 Score=30.52 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 87 GTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 87 ~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|+.|.|..-|...|..|-.....++..+..+..||..+.+.|++-|..+
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4459999999888888877777777778999999999999999999865
No 57
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=67.65 E-value=2.7 Score=45.32 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=49.2
Q ss_pred CCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCC--------------C----------CHHH------HHHHHHH
Q 020702 53 HPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY--------------R----------NVRE------IYADVRL 102 (322)
Q Consensus 53 ~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y--------------~----------s~~e------f~~DvrL 102 (322)
-++|... .|.|..+...|.+|+|++..|.+.. | . ++.+ ..+-+++
T Consensus 88 ~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~---k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~ 162 (1113)
T KOG0644|consen 88 PMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRA---KDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPS 162 (1113)
T ss_pred cCcCCCC--CcceeeeecccchhcchhHHHHhhh---hhcccccccccccccccccCcccccceeccCCcchhhhhcCcc
Confidence 3555554 7889999999999999999999876 5 2 3333 6678889
Q ss_pred HHhcccccCCCCCHHHH
Q 020702 103 VFKNAMKYNDERDDVHV 119 (322)
Q Consensus 103 If~Na~~yN~~~s~v~~ 119 (322)
|-.||+.++.|++-|..
T Consensus 163 i~~at~~~akPgtmvqk 179 (1113)
T KOG0644|consen 163 IGCATFSIAKPGTMVQK 179 (1113)
T ss_pred cccceeeecCcHHHHHH
Confidence 99999999999994443
No 58
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=52.68 E-value=2.3 Score=44.65 Aligned_cols=75 Identities=8% Similarity=-0.082 Sum_probs=66.4
Q ss_pred CCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHH
Q 020702 48 AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEK 127 (322)
Q Consensus 48 a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s~v~~~A~~L~~~ 127 (322)
...|+.-++... +|.|+.+++-||.++-+.+++..+. |.....|..|..+.|.|+-.|+.....++..+..+.+.
T Consensus 213 Ier~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~E---vfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQE---VFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCccccc--ccceeEeeCCccCccccccchhccc---ceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 455666666555 8999999999999999999999999 99999999999999999999999999999888877664
No 59
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.59 E-value=79 Score=33.05 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=53.9
Q ss_pred ccccc-HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 020702 23 CKNLS-ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 101 (322)
Q Consensus 23 ~k~~~-~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dvr 101 (322)
.+..+ ....+.+..+|+..|.++.++ +||.-..+-.|. +| ||..|=+=|-...++.|..+.-|..||-
T Consensus 63 pRpl~dk~~~s~c~~~I~~fL~engf~----~~iS~k~l~~PS----~K---dF~~iFkfLY~~Ldp~y~f~~r~EeEV~ 131 (581)
T KOG0995|consen 63 PRPLSDKRYRSQCIRQIYNFLVENGFS----HPISIKLLMKPS----VK---DFIAIFKFLYGFLDPDYEFPERIEEEVV 131 (581)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHcCCC----CChhhhhcCCCc----cc---cHHHHHHHHHhccCCCcccchhHHHHHH
Confidence 33444 334666778899999888765 566655433443 33 7788888887777778999999999999
Q ss_pred HHHhcc
Q 020702 102 LVFKNA 107 (322)
Q Consensus 102 LIf~Na 107 (322)
.||.|-
T Consensus 132 ~ilK~L 137 (581)
T KOG0995|consen 132 QILKNL 137 (581)
T ss_pred HHHHhC
Confidence 999884
No 60
>PF14933 CEP19: CEP19-like protein
Probab=42.56 E-value=88 Score=27.30 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=31.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 020702 238 VDLDMDAQSELTLWRLKVFVQESLKAASRSSGDMGGN 274 (322)
Q Consensus 238 vElDid~L~~~TL~~L~~yV~~~L~~~~~~~~~~~~~ 274 (322)
-+.|++.|++.+|.+.+.-+...++....+.|..|=.
T Consensus 106 ~~~dlNk~~~~eL~~~K~~Md~~F~~N~~~p~D~~f~ 142 (159)
T PF14933_consen 106 PEEDLNKLDDEELAKVKEIMDELFEKNRIKPGDPGFV 142 (159)
T ss_pred CccccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCCe
Confidence 5789999999999999999999998888777655433
No 61
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=42.22 E-value=39 Score=26.51 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=49.9
Q ss_pred HhhhhccCCHHHHHHHHHHhc-CCChhhHHHHHHHHHhcCCCCCCCCC--eEEEeCCCC-CHHHHHHHHHHHHHH
Q 020702 190 VIQKCRKMSTEEKKNLGTALT-RLSPEDLCKALEIVAENNPSFHATAQ--EVDLDMDAQ-SELTLWRLKVFVQES 260 (322)
Q Consensus 190 ~~~k~r~mt~eEK~~L~~~i~-~L~~e~l~~vi~II~~~~P~~~~~~~--evElDid~L-~~~TL~~L~~yV~~~ 260 (322)
+-.+-+-+|.+|-.+++...+ .+++++...|+.|++....++..+++ .+-..|... +|.|...+...+...
T Consensus 8 Vn~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 8 VNQKLNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred HHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445567899999999999885 57999999999999998766543222 222334444 677777776666554
No 62
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=31.02 E-value=1.6e+02 Score=21.74 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHhc
Q 020702 215 EDLCKALEIVAENNPSFHATAQEVDLDMDAQSELTLWRLKVFVQESLKAA 264 (322)
Q Consensus 215 e~l~~vi~II~~~~P~~~~~~~evElDid~L~~~TL~~L~~yV~~~L~~~ 264 (322)
++...+++.+.+ +.-|-+|++.|+.+..+++-.|+....-..
T Consensus 10 ~D~~~i~~~l~~--------g~~Vivnl~~l~~~~~~Ri~Dfl~G~~~al 51 (73)
T PF04472_consen 10 EDAREIVDALRE--------GKIVIVNLENLDDEEAQRILDFLSGAVYAL 51 (73)
T ss_dssp GGHHHHHHHHHT--------T--EEEE-TTS-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc--------CCEEEEECCCCCHHHHHHHHHHHhchheee
Confidence 456667777766 466889999999999999999999875443
No 63
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=27.44 E-value=87 Score=23.25 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 76 STIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 76 ~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
.-|+..+.+|. |.|.+++++|.-.+|
T Consensus 12 ~~i~~~V~sG~---Y~s~SEVir~aLR~l 37 (69)
T TIGR02606 12 SFIRSQVQSGR---YGSASEVVRAALRLL 37 (69)
T ss_pred HHHHHHHHCCC---CCCHHHHHHHHHHHH
Confidence 46889999999 999999988876544
No 64
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.05 E-value=54 Score=25.90 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=26.5
Q ss_pred CChhhHHHHHHHHHhcCCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHhcccC
Q 020702 212 LSPEDLCKALEIVAENNPSFHATAQEVDLDMDAQSELTLWRLKVFVQESLKAASRS 267 (322)
Q Consensus 212 L~~e~l~~vi~II~~~~P~~~~~~~evElDid~L~~~TL~~L~~yV~~~L~~~~~~ 267 (322)
++++++.+|+++= .-.+.-.|.|+.|+.+.++.+|+-
T Consensus 35 ~s~~~le~vL~l~-------------------~~~~~~vW~lRdyL~~~i~~~G~e 71 (89)
T PF10078_consen 35 TSPEHLEQVLNLK-------------------QPFPEDVWILRDYLNDKIKEQGKE 71 (89)
T ss_pred CCHHHHHHHHcCC-------------------CCCcccchHHHHHHHHHHHHcCCC
Confidence 5677777777652 222233499999999999999964
No 65
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=22.30 E-value=1.7e+02 Score=28.97 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=27.7
Q ss_pred CCChhhHHHHHHHHHhcCCCCCCCCCeEEEeCCCCCHHHHHHHHH
Q 020702 211 RLSPEDLCKALEIVAENNPSFHATAQEVDLDMDAQSELTLWRLKV 255 (322)
Q Consensus 211 ~L~~e~l~~vi~II~~~~P~~~~~~~evElDid~L~~~TL~~L~~ 255 (322)
.|++++|.++++.|.+..|-.....=.+|.+.+.++.+-|..|+.
T Consensus 86 ~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~ 130 (394)
T PRK08898 86 LLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRA 130 (394)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 467888888888888876643323344455556676655544443
No 66
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=21.15 E-value=96 Score=24.91 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=26.5
Q ss_pred hccCCHHHHHHHHHHhc-CCChhhHHHHHHHHHhc
Q 020702 194 CRKMSTEEKKNLGTALT-RLSPEDLCKALEIVAEN 227 (322)
Q Consensus 194 ~r~mt~eEK~~L~~~i~-~L~~e~l~~vi~II~~~ 227 (322)
-+|-|.+|-..|...+. +++++++..++++|.+.
T Consensus 82 l~P~~~~El~~ii~~~~~r~~ee~l~~iL~~v~~~ 116 (117)
T PF03874_consen 82 LRPTTAVELRAIIESLESRFSEEDLEEILDLVSKY 116 (117)
T ss_dssp H--SSHHHHHHHSTTGTTTSTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 37778888888888887 58889999999998764
No 67
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.05 E-value=2e+02 Score=28.28 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=30.8
Q ss_pred CCChhhHHHHHHHHHhcCCCCCCCCCeEEEeCCCCCHHHHHHHHHH
Q 020702 211 RLSPEDLCKALEIVAENNPSFHATAQEVDLDMDAQSELTLWRLKVF 256 (322)
Q Consensus 211 ~L~~e~l~~vi~II~~~~P~~~~~~~evElDid~L~~~TL~~L~~y 256 (322)
-|++++|.++++.|.+..|-.....=.+|.+.+.++.+.|..|+.+
T Consensus 68 ~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~ 113 (380)
T PRK09057 68 LMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAA 113 (380)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHc
Confidence 4678888888888888655432223357777777877777666543
Done!